Citrus Sinensis ID: 018782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvefgikpsiYDLDQLLHALCKRKHVKVAHQFfdnakheftptvKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMrsigaepdafsySIFIHAFCEANDIHSVFRVLDSmkrynlvpnvftYNCIIRKLCKNEKVEEAYQLLDEMIerganpdewsYNAILAYHCDRAEVNMALRLITRMtkenvmpdrhTYNMVLKLLVRVGRFDRATEVWESmekrgfypsvstYSVMVHGLCKKKGKLEEACKYFEMMvdegippyssTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAmrgktgfrksrseetelesd
Flexible Loop (DISEMBL)
mvefgikpsiYDLDQLLHALCKRKHVKVAHQFfdnakheftptvKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMtkenvmpdrhtYNMVLKLLVRVGRFDRATEVwesmekrgfypsvstySVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQelanamrgktgfrksrseetelesd
Low Complexity Region (SEG)
MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD
Disordered region (IsUnstruct)
***FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI**************************
Disordered Region (DISOPRED)
***FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELE**
Disordered Region (DISEMBL)
MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRG*****************
Disordered Region (DISPRO)
****GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELES*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9SSR6	523	Pentatricopeptide repeat-	yes	no	0.988	0.661	0.634	1e-136
Q9FVX2	517	Pentatricopeptide repeat-	no	no	0.897	0.607	0.338	2e-52
P0C8A0	638	Pentatricopeptide repeat-	no	no	0.857	0.470	0.315	9e-44
Q9FH87	637	Putative pentatricopeptid	no	no	0.982	0.540	0.296	2e-43
Q9LZP3	599	Pentatricopeptide repeat-	no	no	0.814	0.475	0.318	3e-43
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.877	0.495	0.322	4e-43
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.86	0.5	0.310	6e-43
Q3EAF8	599	Pentatricopeptide repeat-	no	no	0.814	0.475	0.311	4e-42
Q9LEQ7	598	Pentatricopeptide repeat-	no	no	0.814	0.476	0.311	4e-42
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.825	0.483	0.283	1e-41

>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 220/347 (63%), Positives = 288/347 (82%), Gaps = 1/347 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGE 59
           MVEFGIKP + DLDQLLH+LC +KHV  A +FF  AK     P+ KTYSILVRG   + +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223

Query: 60  LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
            S ARK+FDEMLER C VD+LA+N+LL+A+CK+G++D  + M +EM ++G +PDA+S++I
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283

Query: 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
           FIHA+C+A D+HS ++VLD MKRY+LVPNV+T+N II+ LCKNEKV++AY LLDEMI++G
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343

Query: 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
           ANPD W+YN+I+AYHCD  EVN A +L++RM +   +PDRHTYNMVLKLL+R+GRFDRAT
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRAT 403

Query: 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
           E+WE M +R FYP+V+TY+VM+HGL +KKGKLEEAC+YFEMM+DEGIPPYS+TVEMLRNR
Sbjct: 404 EIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNR 463

Query: 300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETE 346
           LVG G +D++++LA KMERS+SC++Q++A  MRGK      RSE +E
Sbjct: 464 LVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLGRRSENSE 510

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 180/316 (56%), Gaps = 2/316 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M ++ + P++   + LL ALCK K+V+ A + F+N +  FTP  KTYSIL+ G G    L
Sbjct: 194 MEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNL 253

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            +AR++F EM++  C  DI+ ++ +++ +CKAG +DEA G++R M     +P  F YS+ 
Sbjct: 254 PKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVL 313

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           +H +   N +         M+R  +  +V  +N +I   CK  +++  Y++L EM  +G 
Sbjct: 314 VHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 373

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            P+  S N IL +  +R E + A  +  +M K    PD  TY MV+K+       + A +
Sbjct: 374 TPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADK 432

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VW+ M K+G +PS+ T+SV+++GLC+++   ++AC   E M++ GI P   T   LR  L
Sbjct: 433 VWKYMRKKGVFPSMHTFSVLINGLCEERTT-QKACVLLEEMIEMGIRPSGVTFGRLRQLL 491

Query: 301 VGLGFLDIIEILADKM 316
           +     D+++ L +KM
Sbjct: 492 IKEEREDVLKFLNEKM 507

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1

 Score =  177 bits (450), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 160/304 (52%), Gaps = 4/304 (1%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M ++G++P  Y    LL ALCK   VK A + F++ + +F P ++ ++ L+ G    G+L
Sbjct: 193 MPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKL 252

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EA+++  +M E     DI+   +LL     AG + +A+ ++ +MR  G EP+   Y++ 
Sbjct: 253 MEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVL 312

Query: 121 IHAFCEAND-IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
           I A C     +    RV   M+RY    ++ TY  +I   CK   +++ Y +LD+M ++G
Sbjct: 313 IQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG 372

Query: 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
             P + +Y  I+  H  + +    L LI +M +    PD   YN+V++L  ++G    A 
Sbjct: 373 VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAV 432

Query: 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI--PPYSSTVEMLR 297
            +W  ME  G  P V T+ +M++G    +G L EAC +F+ MV  GI   P   T++ L 
Sbjct: 433 RLWNEMEANGLSPGVDTFVIMINGF-TSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLL 491

Query: 298 NRLV 301
           N LV
Sbjct: 492 NNLV 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 181/347 (52%), Gaps = 3/347 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M +FG +P  Y    LL ALCK   VK A + F++ +  F   ++ ++ L+ G   VG++
Sbjct: 209 MPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKM 268

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EA+ +  +M E     DI+ + +LL     AG + +A+ +LR+MR  G EP+A  Y++ 
Sbjct: 269 MEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVL 328

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I A C+ + +    +V   M+RY    +V TY  ++   CK  K+++ Y +LD+MI++G 
Sbjct: 329 IQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGL 388

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            P E +Y  I+  H  +      L L+ +M +    PD   YN+V++L  ++G    A  
Sbjct: 389 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 448

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS--STVEMLRN 298
           +W  ME+ G  P V T+ +M++GL   +G L EA  +F+ MV  G+   S   T+++L N
Sbjct: 449 LWNEMEENGLSPGVDTFVIMINGLA-SQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLN 507

Query: 299 RLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEET 345
            ++    L++ + +   +    +C +  L+  +     F K   +E 
Sbjct: 508 TVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEA 554

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 156/286 (54%), Gaps = 1/286 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 314

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EA +++++M+++    DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct: 315 IEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIM 374

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct: 375 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 434

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD  +YNA++    ++     A R+  +M +  + P  HT+NM++K       ++    
Sbjct: 435 PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRA 494

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
           VWE M K+G  P  ++Y+V++ GL   +GK  EAC+Y E M+D+G+
Sbjct: 495 VWEEMIKKGICPDDNSYTVLIRGLI-GEGKSREACRYLEEMLDKGM 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 157/310 (50%), Gaps = 3/310 (0%)

Query: 5   GIKPSIYDLDQLLHALCKR-KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEA 63
           GIK  +     L+  LC   K    A    +       P V T+S L+      G+L EA
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334

Query: 64  RKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123
           ++L++EM+ R    D + +NSL++  CK   + EA+ M   M S G EPD  +YSI I++
Sbjct: 335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394

Query: 124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD 183
           +C+A  +    R+   +    L+PN  TYN ++   C++ K+  A +L  EM+ RG  P 
Sbjct: 395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 454

Query: 184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE 243
             +Y  +L   CD  E+N AL +  +M K  +      YN+++  +    + D A  ++ 
Sbjct: 455 VVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC 514

Query: 244 SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML-RNRLVG 302
           S+  +G  P V TY+VM+ GLC KKG L EA   F  M ++G  P   T  +L R  L G
Sbjct: 515 SLSDKGVKPDVVTYNVMIGGLC-KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGG 573

Query: 303 LGFLDIIEIL 312
            G +  +E++
Sbjct: 574 SGLISSVELI 583

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score =  175 bits (443), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 5/306 (1%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFT-PTVKTYSILVRGLGDVGE 59
           M+  G+KP ++  + ++  +CK   V  A +   N + +   P V +Y+IL+R L + G+
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query: 60  LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
             E  KL  +M   KC  +++ ++ L+  +C+ G I+EA  +L+ M+  G  PDA+SY  
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
            I AFC    +      L++M     +P++  YN ++  LCKN K ++A ++  ++ E G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
            +P+  SYN + +      +   AL +I  M    + PD  TYN ++  L R G  D A 
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493

Query: 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
           E+   M    F+PSV TY++++ G CK   ++E+A    E MV  G  P  +T  +L   
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAH-RIEDAINVLESMVGNGCRPNETTYTVL--- 549

Query: 300 LVGLGF 305
           + G+GF
Sbjct: 550 IEGIGF 555

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 154/286 (53%), Gaps = 1/286 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 314

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EA +++++M++     DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct: 315 IEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIM 374

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct: 375 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 434

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD  +YNA++    ++       R+  +M +  + P  HT+NM++K       ++    
Sbjct: 435 PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRA 494

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
           VW+ M K+G  P  ++Y+V++ GL   +GK  EAC+Y E M+D+G+
Sbjct: 495 VWDEMIKKGICPDDNSYTVLIRGLI-SEGKSREACRYLEEMLDKGM 539

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 154/286 (53%), Gaps = 1/286 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct: 254 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 313

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EA +++++M++     DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct: 314 IEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIM 373

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct: 374 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 433

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD  +YNA++    ++       R+  +M +  + P  HT+NM++K       ++    
Sbjct: 434 PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRA 493

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
           VW+ M K+G  P  ++Y+V++ GL   +GK  EAC+Y E M+D+G+
Sbjct: 494 VWDEMIKKGICPDDNSYTVLIRGLI-SEGKSREACRYLEEMLDKGM 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 154/296 (52%), Gaps = 7/296 (2%)

Query: 5   GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEAR 64
           G  P +   + ++   CK   +  A    D  +   +P V TY+ ++R L D G+L +A 
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLD--RMSVSPDVVTYNTILRSLCDSGKLKQAM 224

Query: 65  KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAF 124
           ++ D ML+R C  D++ +  L+EA C+   +  A  +L EMR  G  PD  +Y++ ++  
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query: 125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE 184
           C+   +    + L+ M      PNV T+N I+R +C   +  +A +LL +M+ +G +P  
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query: 185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244
            ++N ++ + C +  +  A+ ++ +M +    P+  +YN +L    +  + DRA E  E 
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP----YSSTVEML 296
           M  RG YP + TY+ M+  LC K GK+E+A +    +  +G  P    Y++ ++ L
Sbjct: 405 MVSRGCYPDIVTYNTMLTALC-KDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224077524	523	predicted protein [Populus trichocarpa]	0.9	0.602	0.722	1e-152
225443015	624	PREDICTED: pentatricopeptide repeat-cont	0.894	0.501	0.702	1e-148
297743427	517	unnamed protein product [Vitis vinifera]	0.894	0.605	0.702	1e-148
255580124	519	pentatricopeptide repeat-containing prot	0.931	0.628	0.735	1e-147
356495741	523	PREDICTED: pentatricopeptide repeat-cont	1.0	0.669	0.669	1e-140
449469288	529	PREDICTED: pentatricopeptide repeat-cont	0.994	0.657	0.667	1e-139
449484422	529	PREDICTED: pentatricopeptide repeat-cont	0.994	0.657	0.667	1e-139
356540361	523	PREDICTED: pentatricopeptide repeat-cont	1.0	0.669	0.663	1e-138
15219049	523	pentatricopeptide repeat-containing prot	0.988	0.661	0.634	1e-134
297853022	525	pentatricopeptide repeat-containing prot	0.988	0.659	0.631	1e-134

>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa] gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 253/350 (72%), Positives = 296/350 (84%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M EFG++PS+ DLD+LL+ LCK KHVK A QFFD  KH+F    KTYSILVRG GD+GE 
Sbjct: 174 MAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKHKFEAKAKTYSILVRGWGDIGEA 233

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            EARK+FDEM  R C +D+LA+NSLLEA+CK GN+DEA+ M RE+ S G EPDA SY+IF
Sbjct: 234 VEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIF 293

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I A+CEAN+IHSVF VLD MKRY+LVPNVFTYNCII+KLCKN KVE+AYQLL EM+ERG 
Sbjct: 294 IRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGV 353

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
           +PD WSYN ILAYHC+ +EVN A +LI+ M K+N +PDRH+YNM+LKLLVRVGRFDRATE
Sbjct: 354 SPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATE 413

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           +WESM +RGFYPSVSTYSVM+HGLCKKKGKLEEAC+YFE M+DEGIPPY+ST+EMLRNRL
Sbjct: 414 IWESMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRNRL 473

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD 350
           +G G LD IEILA KMER TSC+IQELA  MRG     +SR+EETELES+
Sbjct: 474 IGFGLLDHIEILACKMERGTSCSIQELAKEMRGNKACVRSRNEETELESE 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/350 (70%), Positives = 291/350 (83%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M +FG+K  + D+DQLL+ LCKRKHVK A +FFD    E  P  KTYSIL+RG GDVG+ 
Sbjct: 176 MGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDS 235

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
           SEARKLF+EM ER C VD++A+NSLLEA+CK GN+DEA+ + REM S G  PDA SYSIF
Sbjct: 236 SEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIF 295

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I A+CE NDIHS F+VLD M+RYNLVPNVFTYNCI++KLCK+EKV+EAYQLLDEMIERG 
Sbjct: 296 IRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV 355

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
           +PD WSYNAI A+HCD  EVN ALRLI+RM KEN MPDRHTYNMVLK+L+RVGRFDR T+
Sbjct: 356 SPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTD 415

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VW  ME+RGFYP+ STY+VMVHG CKKKGKLEEACKYFEMM+D+GIPPYS TVE+LRNR+
Sbjct: 416 VWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRV 475

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD 350
           +GLGF + I++LA KMERSTSC IQEL++ MRG+    + RSEE  L S+
Sbjct: 476 IGLGFSEQIDVLAGKMERSTSCVIQELSSVMRGEKASGRLRSEEQNLPSE 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/350 (70%), Positives = 291/350 (83%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M +FG+K  + D+DQLL+ LCKRKHVK A +FFD    E  P  KTYSIL+RG GDVG+ 
Sbjct: 149 MGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDS 208

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
           SEARKLF+EM ER C VD++A+NSLLEA+CK GN+DEA+ + REM S G  PDA SYSIF
Sbjct: 209 SEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIF 268

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I A+CE NDIHS F+VLD M+RYNLVPNVFTYNCI++KLCK+EKV+EAYQLLDEMIERG 
Sbjct: 269 IRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV 328

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
           +PD WSYNAI A+HCD  EVN ALRLI+RM KEN MPDRHTYNMVLK+L+RVGRFDR T+
Sbjct: 329 SPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTD 388

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VW  ME+RGFYP+ STY+VMVHG CKKKGKLEEACKYFEMM+D+GIPPYS TVE+LRNR+
Sbjct: 389 VWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRV 448

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD 350
           +GLGF + I++LA KMERSTSC IQEL++ MRG+    + RSEE  L S+
Sbjct: 449 IGLGFSEQIDVLAGKMERSTSCVIQELSSVMRGEKASGRLRSEEQNLPSE 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/333 (73%), Positives = 283/333 (84%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           MVEFG+KP+I DLDQLL+ LCKRKH K A Q FD  KH+F    KTYSILVRG GD+GE 
Sbjct: 170 MVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKHQFQTRAKTYSILVRGWGDIGES 229

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
             A K+FDEM E++C VD+LA+NSLLEA CK G + EA+ M REM S G +PDA ++SIF
Sbjct: 230 VSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIF 289

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I A+CEANDIH  +RVLD MKRY+LVPNVFTYNC+I+KLCK EKVEEAYQLL+E+IER  
Sbjct: 290 IRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSG 349

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD WSYNAILAYHC+ +EVN A RLI+RM K+N +PD+H+YNM+LKLL+RVGRFDRA E
Sbjct: 350 QPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIE 409

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VWESM ++GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM+DEGIPPYSSTVE+LRNRL
Sbjct: 410 VWESMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPPYSSTVEILRNRL 469

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRG 333
           +GLG LD IEILA KME ST+C+IQELA AMRG
Sbjct: 470 IGLGLLDYIEILAGKMEHSTACSIQELAIAMRG 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Glycine max]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/351 (66%), Positives = 283/351 (80%), Gaps = 1/351 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M EFG+KP+I+DLD+LL  LCKRKHVK A Q F  AK+ F+ T KTYSIL+ G G++G+ 
Sbjct: 173 MDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYSILISGWGEIGDS 232

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            +A  LF  MLE+ CPVD+LA+N+LL+A+CK G +DEA  +  +M S   EPDAF+YSIF
Sbjct: 233 EKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIF 292

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           IH++C+A+D+ S FRVLD M+RYNL+PNVFTYNCII++LCKNE VEEAYQLLDEMI RG 
Sbjct: 293 IHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGV 352

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD WSYNAI AYHCD  EVN ALRL+ RM K+  +PDRHTYNMVLKLL+R+GRFD+ TE
Sbjct: 353 KPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTE 412

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VWE+M  + FYPSVSTYSVM+HG CKKKGKLEEACKYFEMM+DEGIPPY +TVEMLRNRL
Sbjct: 413 VWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLRNRL 472

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRG-KTGFRKSRSEETELESD 350
           +GLGF+D IEILA KM +STS  IQELAN M G +T       +E ++ESD
Sbjct: 473 LGLGFIDHIEILAAKMRQSTSYAIQELANIMIGNRTAHNTLGRDEMDIESD 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Cucumis sativus]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 285/355 (80%), Gaps = 7/355 (1%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M EFGI+  + DLD+LL+ LCKRKHV  A QFFD  K  F P+VKTYSIL RG G VG+ 
Sbjct: 177 MGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDS 236

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
           + A+K+FDEM ER C +D+LA+NSLLEA+CK G  DEA+ M  EM S G +PDA +YSIF
Sbjct: 237 NNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIF 296

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I + C+ ND+H+V+RVL+  KR NL+PNVFTYNC+I+KLCK++ VEEAYQ+LDEMIERG 
Sbjct: 297 IRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGV 356

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD WSYNAI AYHCD +EVN AL L+ RM ++  +PD+HTYNMVLKLLVRVGRFDRA E
Sbjct: 357 TPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANE 416

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VWESM KRGFYPSVSTY+VM+HG CKKK KLEEACKYFEMM+DEGIPPY +TVE+LR+RL
Sbjct: 417 VWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRL 476

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKS-----RSEETELESD 350
           +G+GF D + IL DKM+RSTSC+IQELAN M G  G R+      ++EETE ESD
Sbjct: 477 LGIGFKDQVAILGDKMKRSTSCSIQELANLMSG--GKRREAQSMLKNEETEHESD 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Cucumis sativus]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/355 (66%), Positives = 285/355 (80%), Gaps = 7/355 (1%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M EFGI+  + DLD+LL+ LCKRKHV  A QFFD  K  F P+VKTYSIL RG G VG+ 
Sbjct: 177 MGEFGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDS 236

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
           + A+K+FDEM ER C +D+LA+NSLLEA+CK G  DEA+ M  EM S G +PDA +YSIF
Sbjct: 237 NNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIF 296

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           I + C+ ND+H+V+RVL+  KR NL+PNVFTYNC+I+KLCK++ VEEAYQ+LDEMIERG 
Sbjct: 297 IRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGV 356

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD WSYNAI AYHCD +EVN AL L+ RM ++  +PD+HTYNMVLKLLVRVGRFDRA E
Sbjct: 357 TPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANE 416

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VWESM KRGFYPSVSTY+VM+HG CKKK KLEEACKYFEMM+DEGIPPY +TVE+LR+RL
Sbjct: 417 VWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRL 476

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKS-----RSEETELESD 350
           +G+GF D + IL DKM+RSTSC+IQELAN M G  G R+      ++EETE ESD
Sbjct: 477 LGIGFKDQVAILGDKMKRSTSCSIQELANLMSG--GKRREAQSMLKNEETEHESD 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial-like [Glycine max]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/351 (66%), Positives = 281/351 (80%), Gaps = 1/351 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
           M EFGIKP+I D D+LL  LCK KHVK A QFFD AK+ F  T KTYSIL+ G GD+G+ 
Sbjct: 173 MDEFGIKPTINDFDKLLFILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILISGWGDIGDS 232

Query: 61  SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
            +A +LF  MLE+ CPVD+LA+N+LL+A+CK G +DEA  +  +M S   EPDAF+YSIF
Sbjct: 233 EKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIF 292

Query: 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
           IH++C+A+D+ S  RVLD M+RYN++PNVFTYNCII++LCKNE VEEAY LLDEMI RG 
Sbjct: 293 IHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGV 352

Query: 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
            PD WSYNAI AYHCD  EVN A+RL+ RM K+N +PDRHTYNMVLKLL+R+GRFD+ T+
Sbjct: 353 RPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTK 412

Query: 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
           VW +M  + FYPSVSTYSVM+HG CKKKGKLEEACKYFEMM+DEGIPPY +TVEMLRN+L
Sbjct: 413 VWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLRNQL 472

Query: 301 VGLGFLDIIEILADKMERSTSCTIQELANAMRG-KTGFRKSRSEETELESD 350
           +GLGFLD IEILA KM +STS  IQELAN M G +T     R +E ++ESD
Sbjct: 473 LGLGFLDHIEILAAKMRQSTSYAIQELANIMIGNRTTHNTLRRDEMDIESD 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52640, mitochondrial; Flags: Precursor gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana] gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana] gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana] gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/347 (63%), Positives = 288/347 (82%), Gaps = 1/347 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGE 59
           MVEFGIKP + DLDQLLH+LC +KHV  A +FF  AK     P+ KTYSILVRG   + +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223

Query: 60  LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
            S ARK+FDEMLER C VD+LA+N+LL+A+CK+G++D  + M +EM ++G +PDA+S++I
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283

Query: 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
           FIHA+C+A D+HS ++VLD MKRY+LVPNV+T+N II+ LCKNEKV++AY LLDEMI++G
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343

Query: 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
           ANPD W+YN+I+AYHCD  EVN A +L++RM +   +PDRHTYNMVLKLL+R+GRFDRAT
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRAT 403

Query: 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
           E+WE M +R FYP+V+TY+VM+HGL +KKGKLEEAC+YFEMM+DEGIPPYS+TVEMLRNR
Sbjct: 404 EIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNR 463

Query: 300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETE 346
           LVG G +D++++LA KMERS+SC++Q++A  MRGK      RSE +E
Sbjct: 464 LVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLGRRSENSE 510

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 219/347 (63%), Positives = 289/347 (83%), Gaps = 1/347 (0%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGE 59
           MVEFGIKP + DLDQLLH+LC RKHV  A +FFD AK     P+ KTYSILVRG   + +
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIVPSAKTYSILVRGWARIRD 223

Query: 60  LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
            S ARK+FDEMLE  C VD+LA+N+LL+A+CK+G++D A+ M +EM ++G +PDA+S++I
Sbjct: 224 ASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAI 283

Query: 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
           FIH++C+A+D+HS ++VLD MKRY+LVPNV+T+N II+ LCKNEKV++AY LLDEMI++G
Sbjct: 284 FIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343

Query: 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
           ANPD W+YN+I+AYHCD  EVN A +L++RM +   +PDRHTYNMVLKLL+R+GRFDR T
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVT 403

Query: 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
           E+WE M +R FYP+V+TY+VM+HGL +KKGKLEEAC+YFEMM+DEGIPPYS+TVEMLRNR
Sbjct: 404 EIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNR 463

Query: 300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETE 346
           LVG G +D++++LA KMERS+SC+++++A  MRGK      RSE +E
Sbjct: 464 LVGWGQMDVVDVLAGKMERSSSCSVRDMAVEMRGKRRRLGRRSEGSE 510

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2035206	523	AT1G52640 [Arabidopsis thalian	1.0	0.669	0.629	4.8e-126
TAIR|locus:2097395	638	AT3G49730 [Arabidopsis thalian	0.922	0.506	0.301	7.3e-43
TAIR|locus:2156213	637	AT5G65820 [Arabidopsis thalian	0.857	0.470	0.320	5.2e-42
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.86	0.5	0.310	6.6e-42
TAIR|locus:2096099	599	AT3G62470 "AT3G62470" [Arabido	0.814	0.475	0.318	1.1e-41
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.882	0.499	0.320	1.4e-41
TAIR|locus:2185455	598	AT5G14820 "AT5G14820" [Arabido	0.814	0.476	0.311	9.6e-41
TAIR|locus:2096074	599	AT3G62540 "AT3G62540" [Arabido	0.814	0.475	0.311	9.6e-41
TAIR|locus:2026207	548	AT1G62680 [Arabidopsis thalian	0.928	0.593	0.302	3.3e-40
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.848	0.496	0.283	3.7e-39

TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 221/351 (62%), Positives = 290/351 (82%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGE 59
             MVEFGIKP + DLDQLLH+LC +KHV  A +FF  AK     P+ KTYSILVRG   + +
Sbjct:   164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223

Query:    60 LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
              S ARK+FDEMLER C VD+LA+N+LL+A+CK+G++D  + M +EM ++G +PDA+S++I
Sbjct:   224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283

Query:   120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
             FIHA+C+A D+HS ++VLD MKRY+LVPNV+T+N II+ LCKNEKV++AY LLDEMI++G
Sbjct:   284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343

Query:   180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
             ANPD W+YN+I+AYHCD  EVN A +L++RM +   +PDRHTYNMVLKLL+R+GRFDRAT
Sbjct:   344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRAT 403

Query:   240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
             E+WE M +R FYP+V+TY+VM+HGL +KKGKLEEAC+YFEMM+DEGIPPYS+TVEMLRNR
Sbjct:   404 EIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNR 463

Query:   300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSRSEETELESD 350
             LVG G +D++++LA KMERS+SC++Q++A  MRGK      RSE +E + D
Sbjct:   464 LVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLGRRSENSEDDDD 514

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 99/328 (30%), Positives = 172/328 (52%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
             M ++G++P  Y    LL ALCK   VK A + F++ + +F P ++ ++ L+ G    G+L
Sbjct:   193 MPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKL 252

Query:    61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
              EA+++  +M E     DI+   +LL     AG + +A+ ++ +MR  G EP+   Y++ 
Sbjct:   253 MEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVL 312

Query:   121 IHAFCEAND-IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
             I A C     +    RV   M+RY    ++ TY  +I   CK   +++ Y +LD+M ++G
Sbjct:   313 IQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG 372

Query:   180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
               P + +Y  I+  H  + +    L LI +M +    PD   YN+V++L  ++G    A 
Sbjct:   373 VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAV 432

Query:   240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI--PPYSSTVEMLR 297
              +W  ME  G  P V T+ +M++G   + G L EAC +F+ MV  GI   P   T++ L 
Sbjct:   433 RLWNEMEANGLSPGVDTFVIMINGFTSQ-GFLIEACNHFKEMVSRGIFSAPQYGTLKSLL 491

Query:   298 NRLVGLGFLDII-EILADKMERSTSCTI 324
             N LV    L++  ++ +    +++SC +
Sbjct:   492 NNLVRDDKLEMAKDVWSCISNKTSSCEL 519

GO:0005739 "mitochondrion" evidence=ISM

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 97/303 (32%), Positives = 165/303 (54%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
             M +FG +P  Y    LL ALCK   VK A + F++ +  F   ++ ++ L+ G   VG++
Sbjct:   209 MPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKM 268

Query:    61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
              EA+ +  +M E     DI+ + +LL     AG + +A+ +LR+MR  G EP+A  Y++ 
Sbjct:   269 MEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVL 328

Query:   121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
             I A C+ + +    +V   M+RY    +V TY  ++   CK  K+++ Y +LD+MI++G 
Sbjct:   329 IQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGL 388

Query:   181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
              P E +Y  I+  H  +      L L+ +M +    PD   YN+V++L  ++G    A  
Sbjct:   389 MPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVR 448

Query:   241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS--TVEMLRN 298
             +W  ME+ G  P V T+ +M++GL  + G L EA  +F+ MV  G+   S   T+++L N
Sbjct:   449 LWNEMEENGLSPGVDTFVIMINGLASQ-GCLLEASDHFKEMVTRGLFSVSQYGTLKLLLN 507

Query:   299 RLV 301
              ++
Sbjct:   508 TVL 510

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 95/306 (31%), Positives = 161/306 (52%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGE 59
             M+  G+KP ++  + ++  +CK   V  A +   N + +   P V +Y+IL+R L + G+
Sbjct:   254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query:    60 LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
               E  KL  +M   KC  +++ ++ L+  +C+ G I+EA  +L+ M+  G  PDA+SY  
Sbjct:   314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query:   120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
              I AFC    +      L++M     +P++  YN ++  LCKN K ++A ++  ++ E G
Sbjct:   374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query:   180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
              +P+  SYN + +      +   AL +I  M    + PD  TYN ++  L R G  D A 
Sbjct:   434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493

Query:   240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
             E+   M    F+PSV TY++++ G CK   ++E+A    E MV  G  P  +T  +L   
Sbjct:   494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAH-RIEDAINVLESMVGNGCRPNETTYTVL--- 549

Query:   300 LVGLGF 305
             + G+GF
Sbjct:   550 IEGIGF 555

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 91/286 (31%), Positives = 156/286 (54%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
             M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct:   255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 314

Query:    61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
              EA +++++M+++    DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct:   315 IEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIM 374

Query:   121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
             I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct:   375 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 434

Query:   181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
              PD  +YNA++    ++     A R+  +M +  + P  HT+NM++K       ++    
Sbjct:   435 PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRA 494

Query:   241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
             VWE M K+G  P  ++Y+V++ GL  + GK  EAC+Y E M+D+G+
Sbjct:   495 VWEEMIKKGICPDDNSYTVLIRGLIGE-GKSREACRYLEEMLDKGM 539

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 100/312 (32%), Positives = 158/312 (50%)

Query:     5 GIKPSIYDLDQLLHALCKR-KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEA 63
             GIK  +     L+  LC   K    A    +       P V T+S L+      G+L EA
Sbjct:   275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334

Query:    64 RKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123
             ++L++EM+ R    D + +NSL++  CK   + EA+ M   M S G EPD  +YSI I++
Sbjct:   335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394

Query:   124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD 183
             +C+A  +    R+   +    L+PN  TYN ++   C++ K+  A +L  EM+ RG  P 
Sbjct:   395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 454

Query:   184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE 243
               +Y  +L   CD  E+N AL +  +M K  +      YN+++  +    + D A  ++ 
Sbjct:   455 VVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFC 514

Query:   244 SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML-RNRLVG 302
             S+  +G  P V TY+VM+ GLCKK G L EA   F  M ++G  P   T  +L R  L G
Sbjct:   515 SLSDKGVKPDVVTYNVMIGGLCKK-GSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGG 573

Query:   303 LGFLDIIEILAD 314
              G +  +E++ +
Sbjct:   574 SGLISSVELIEE 585

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 89/286 (31%), Positives = 154/286 (53%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
             M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct:   254 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 313

Query:    61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
              EA +++++M++     DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct:   314 IEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIM 373

Query:   121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
             I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct:   374 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 433

Query:   181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
              PD  +YNA++    ++       R+  +M +  + P  HT+NM++K       ++    
Sbjct:   434 PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRA 493

Query:   241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
             VW+ M K+G  P  ++Y+V++ GL  + GK  EAC+Y E M+D+G+
Sbjct:   494 VWDEMIKKGICPDDNSYTVLIRGLISE-GKSREACRYLEEMLDKGM 538

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 89/286 (31%), Positives = 154/286 (53%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL 60
             M ++  K  +  ++ LL +L + K  K A   FD  K  FTP + TY++L+ G   V  L
Sbjct:   255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNL 314

Query:    61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120
              EA +++++M++     DI+AHN +LE + ++    +A  +   M+S G  P+  SY+I 
Sbjct:   315 IEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIM 374

Query:   121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180
             I  FC+ + + +     D M    L P+   Y C+I      +K++  Y+LL EM E+G 
Sbjct:   375 IRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH 434

Query:   181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240
              PD  +YNA++    ++       R+  +M +  + P  HT+NM++K       ++    
Sbjct:   435 PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRA 494

Query:   241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
             VW+ M K+G  P  ++Y+V++ GL  + GK  EAC+Y E M+D+G+
Sbjct:   495 VWDEMIKKGICPDDNSYTVLIRGLISE-GKSREACRYLEEMLDKGM 539

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 100/331 (30%), Positives = 171/331 (51%)

Query:     1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGE 59
             MVE G KP I   + ++ +LCK K V  A  FF   + +   P V TY+ LV GL +   
Sbjct:   181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query:    60 LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119
              S+A +L  +M+++K   +++ +++LL+A  K G + EA  +  EM  +  +PD  +YS 
Sbjct:   241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300

Query:   120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
              I+  C  + I    ++ D M     + +V +YN +I   CK ++VE+  +L  EM +RG
Sbjct:   301 LINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG 360

Query:   180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239
                +  +YN ++       +V+ A    ++M    + PD  TYN++L  L   G  ++A 
Sbjct:   361 LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKAL 420

Query:   240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299
              ++E M+KR     + TY+ ++ G+CK  GK+EEA   F  +  +G+ P   T   + + 
Sbjct:   421 VIFEDMQKREMDLDIVTYTTVIRGMCKT-GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479

Query:   300 LVGLGFLDIIEILADKMERS----TSCTIQE 326
             L   G L  +E L  KM++       CT+ +
Sbjct:   480 LCTKGLLHEVEALYTKMKQEGLMKNDCTLSD 510

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 85/300 (28%), Positives = 153/300 (51%)

Query:     5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEAR 64
             G  P +   + ++   CK   +  A    D  +   +P V TY+ ++R L D G+L +A 
Sbjct:   167 GAVPDVITYNVMISGYCKAGEINNALSVLD--RMSVSPDVVTYNTILRSLCDSGKLKQAM 224

Query:    65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAF 124
             ++ D ML+R C  D++ +  L+EA C+   +  A  +L EMR  G  PD  +Y++ ++  
Sbjct:   225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284

Query:   125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE 184
             C+   +    + L+ M      PNV T+N I+R +C   +  +A +LL +M+ +G +P  
Sbjct:   285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344

Query:   185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244
              ++N ++ + C +  +  A+ ++ +M +    P+  +YN +L    +  + DRA E  E 
Sbjct:   345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query:   245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLG 304
             M  RG YP + TY+ M+  LCK  GK+E+A +    +  +G  P   T   + + L   G
Sbjct:   405 MVSRGCYPDIVTYNTMLTALCKD-GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSR6	PPR78_ARATH	No assigned EC number	0.6340	0.9885	0.6615	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-19
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	6e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
pfam01535	31	pfam01535, PPR, PPR repeat	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 59/238 (24%), Positives = 113/238 (47%), Gaps = 11/238 (4%)

Query: 6   IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEF----TPTVKTYSILVRGLGDVGELS 61
           I P    +  L+ A      V  A + +    HE+    TP V  Y+I V      G+  
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIKGTPEV--YTIAVNSCSQKGDWD 631

Query: 62  EARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121
            A  ++D+M ++    D +  ++L++    AG++D+A  +L++ R  G +    SYS  +
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

Query: 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN 181
            A   A +      + + +K   L P V T N +I  LC+  ++ +A ++L EM   G  
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

Query: 182 PDEWSYNAILAYHCDR-AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA 238
           P+  +Y +IL    +R  + ++ L L+++  ++ + P+      +  L +R  RF++A
Sbjct: 752 PNTITY-SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 88.4 bits (219), Expect = 5e-19
 Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 83  NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR 142
           N L+     + +ID A  +LR ++  G + D   Y+  I    ++  + ++F V   M  
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500

Query: 143 YNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA-EVN 201
             +  NV T+  +I    +  +V +A+     M  +   PD   +NA+++  C ++  V+
Sbjct: 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS-ACGQSGAVD 559

Query: 202 MALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSV 259
            A  ++  M  E   + PD  T   ++K     G+ DRA EV++ + +     +   Y++
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619

Query: 260 MVHGLCKKKGKLEEACKYFEMMVDEGIPP 288
            V+  C +KG  + A   ++ M  +G+ P
Sbjct: 620 AVNS-CSQKGDWDFALSIYDDMKKKGVKP 647

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 78.4 bits (193), Expect = 8e-16
 Identities = 61/302 (20%), Positives = 118/302 (39%), Gaps = 47/302 (15%)

Query: 27  KVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86
           +V H+   NA  E    V T+  L+ G    G++++A   +  M  +    D +  N+L+
Sbjct: 493 EVFHEM-VNAGVE--ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549

Query: 87  EAMCKAGNIDEAHGMLREMRSIGAE-----PDAFSYSIFIHAFCEANDIHSVFRVLDSMK 141
            A  ++G +D A  +L EM+   AE     PD  +    + A   A  +     V   + 
Sbjct: 550 SACGQSGAVDRAFDVLAEMK---AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606

Query: 142 RYNL--VPNVFT-------------YNCIIRKLCKNE--------------------KVE 166
            YN+   P V+T             +   I    K +                     ++
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666

Query: 167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL 226
           +A+++L +  ++G      SY++++    +      AL L   +    + P   T N ++
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726

Query: 227 KLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
             L    +  +A EV   M++ G  P+  TYS+++    ++K   +          ++GI
Sbjct: 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADVGLDLLSQAKEDGI 785

Query: 287 PP 288
            P
Sbjct: 786 KP 787

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 6e-15
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 147 PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196
           P+V TYN +I   CK  KVEEA +L +EM +RG  P+ ++Y+ ++   C 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.1 bits (160), Expect = 5e-14
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 217 PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK 266
           PD  TYN ++    + G+ + A +++  M+KRG  P+V TYS+++ GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 2e-13
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161
           PD  +Y+  I  +C+   +    ++ + MK+  + PNV+TY+ +I  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 16/239 (6%)

Query: 58  GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY 117
           G++ +AR +FD M E+      +A NS+L      G  +EA  +  EMR  G   D F++
Sbjct: 273 GDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328

Query: 118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177
           SI I  F     +    +    + R     ++     ++    K  ++E+A  + D M  
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388

Query: 178 RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237
           +       S+NA++A + +      A+ +  RM  E V P+  T+  VL      G  ++
Sbjct: 389 KNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444

Query: 238 ATEVWESM-EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEM 295
             E+++SM E     P    Y+ M+  L  ++G L+EA   + M+      P+  TV M
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIE-LLGREGLLDEA---YAMIRR---APFKPTVNM 496

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 62.4 bits (153), Expect = 5e-13
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 78  DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125
           D++ +N+L++  CK G ++EA  +  EM+  G +P+ ++YSI I   C
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.9 bits (131), Expect = 5e-10
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91
          P V TY+ L+ G    G++ EA KLF+EM +R    ++  ++ L++ +CK
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 144 NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175
            L P+V TYN +I  LC+  +V+EA +LLDEM
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 252 PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288
           P V TY+ ++ G CKK GK+EEA K F  M   GI P
Sbjct: 1   PDVVTYNTLIDGYCKK-GKVEEALKLFNEMKKRGIKP 36

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 57/267 (21%), Positives = 114/267 (42%), Gaps = 17/267 (6%)

Query: 46  TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREM 105
           ++++LV G    G   EA  L+  ML      D+     +L   C  G  D A G  RE+
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C-GGIPDLARG--REV 209

Query: 106 RS----IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161
            +     G E D    +  I  + +  D+ S   V D M R + +    ++N +I    +
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFE 265

Query: 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT 221
           N +  E  +L   M E   +PD  +  ++++      +  +   +   + K     D   
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325

Query: 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM 281
            N ++++ + +G +  A +V+  ME +       +++ M+ G  +K G  ++A + + +M
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISG-YEKNGLPDKALETYALM 380

Query: 282 VDEGIPPYSSTVEMLRNRLVGLGFLDI 308
             + + P   T+  + +    LG LD+
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDV 407

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 64/314 (20%), Positives = 125/314 (39%), Gaps = 42/314 (13%)

Query: 1   MVEFGIKPSIYDLDQLLH--------ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVR 52
           M+  G++P +Y    +L         A  +  H  V        +  F   V   + L+ 
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-------RFGFELDVDVVNALIT 230

Query: 53  GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP 112
                G++  AR +FD M  R    D ++ N+++    + G   E   +   MR +  +P
Sbjct: 231 MYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286

Query: 113 DAFSYSIFIHAFCE-------ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165
           D  + +  I A CE         ++H        + +     +V   N +I+        
Sbjct: 287 DLMTITSVISA-CELLGDERLGREMHGY------VVKTGFAVDVSVCNSLIQMYLSLGSW 339

Query: 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMV 225
            EA ++   M  +    D  S+ A+++ +      + AL     M ++NV PD  T   V
Sbjct: 340 GEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395

Query: 226 LKLLVRVGRFDRATEVWESMEKRGF--YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283
           L     +G  D   ++ E  E++G   Y  V+   + ++  CK    +++A + F  + +
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---CIDKALEVFHNIPE 452

Query: 284 EGIPPYSSTVEMLR 297
           + +  ++S +  LR
Sbjct: 453 KDVISWTSIIAGLR 466

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE 184
            TYN +I  LCK  +VEEA +L  EM ERG  PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 248 RGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMV 282
           +G  P V TY+ ++ GLC + G+++EA +  + M 
Sbjct: 1   KGLKPDVVTYNTLIDGLC-RAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTK 212
           N  +R LC + ++E+A +LL+ M E     DE +Y A+      +  V    R+ +R   
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 213 ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLE 272
            +        N +L + VR G    A  V+  M +R  +    +++V+V G   K G  +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGY-AKAGYFD 169

Query: 273 EA-CKYFEMM 281
           EA C Y  M+
Sbjct: 170 EALCLYHRML 179

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 16 LLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGL 54
          L+   CK+  V+ A + F+   K    P V TYSIL+ GL
Sbjct: 9  LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179
            TYN +I   CK  K+EEA +L  EM E+G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 109 GAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK 141
           G +PD  +Y+  I   C A  +     +LD M+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV 254
            TYN ++  L + GR + A E+++ M++RG  P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDI 79
          TY+ L+ GL   G + EA +LF EM ER    D+
Sbjct: 2  TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 57/295 (19%), Positives = 109/295 (36%), Gaps = 30/295 (10%)

Query: 13  LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVK-TYSILVRGLG------------DVGE 59
           LD++  +L   + +    +F    +   TP    + S + +GL             +V E
Sbjct: 13  LDEIRDSLSNPRLLHSPRKFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKPEPIRIEVSE 72

Query: 60  LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPDAFSYS 118
             +AR   D+   RK  V + +    +E +   G   EA  +   + +       A +Y 
Sbjct: 73  SKDAR--LDDTQIRKSGVSLCSQ---IEKLVACGRHREALELFEILEAGCPFTLPASTYD 127

Query: 119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178
             + A      I  V  V   ++     P+ +  N ++    K   + +A +L DEM ER
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187

Query: 179 GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA 238
               +  S+  I+    D      A  L   M ++    +  T+ ++L+    +G     
Sbjct: 188 ----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243

Query: 239 TEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTV 293
            ++   + K G          ++  +  K G +E+A   F+ M      P  +TV
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALID-MYSKCGDIEDARCVFDGM------PEKTTV 291

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 183 DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVW 242
           D  S+N +L  +    + +MA+ L  RM +  V PD  T+  +L    R G   +  E +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612

Query: 243 ESME-KRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM 281
            SME K    P++  Y+ +V  L  + GKL EA  +   M
Sbjct: 613 HSMEEKYSITPNLKHYACVVD-LLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 40.0 bits (95), Expect = 4e-05
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEM 70
            P V TY+ L+ GL   G + EA +L DEM
Sbjct: 3  LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 44/242 (18%)

Query: 46  TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA------- 98
           T+SI++R    +  L  A++    ++    P+DI+A+ +L++   K G +++A       
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386

Query: 99  -----------------HG-------MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF 134
                            HG       M   M + G  P+  ++   + A   +      +
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446

Query: 135 RVLDSMKR-YNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAY 193
            +  SM   + + P    Y C+I  L +   ++EAY     MI R       +  A L  
Sbjct: 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA----MIRRAPFKPTVNMWAALLT 502

Query: 194 HCDRAEVNMALRLITRMTKENVM---PDR-HTYNMVLKLLVRVGRFDRATEVWESMEKRG 249
            C R   N+ L    R+  E +    P++ + Y ++L L    GR   A +V E+++++G
Sbjct: 503 AC-RIHKNLEL---GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558

Query: 250 FY 251
             
Sbjct: 559 LS 560

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 8e-05
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 73  RKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR 106
           +    D++ +N+L++ +C+AG +DEA  +L EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV 149
            +Y+  I   C+A  +     +   MK   + P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288
           TY+ ++ GLCK  G++EEA + F+ M + GI P
Sbjct: 2   TYNTLIDGLCKA-GRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252
            TYN +L  L + G  D A  V E M+  G  P
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286
            TY+ ++ G CK  GKLEEA + F+ M ++G+
Sbjct: 1   VTYNSLISGYCKA-GKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 1   MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEF--TPTVKTYSILVRGLGDVG 58
           MVE G+ P       LL A  +   V    ++F + + ++  TP +K Y+ +V  LG  G
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639

Query: 59  ELSEARKLFDEM 70
           +L+EA    ++M
Sbjct: 640 KLTEAYNFINKM 651

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 46 TYSILVRGLGDVGELSEARKLFDEMLERKC 75
          TY+ L+ G    G+L EA +LF EM E+  
Sbjct: 2  TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP 147
             +Y+  + A  +A D      VL+ MK   L P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 15/178 (8%)

Query: 78  DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVL 137
           D+++ N LL      G    A  +   M   G  PD  ++   + A   +  +       
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612

Query: 138 DSMK-RYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA---- 192
            SM+ +Y++ PN+  Y C++  L +  K+ EAY  +++M      PD   + A+L     
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRI 669

Query: 193 -YHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG 249
             H +  E  +A + I  +   +V      Y ++  L    G++D    V ++M + G
Sbjct: 670 HRHVELGE--LAAQHIFELDPNSV----GYYILLCNLYADAGKWDEVARVRKTMRENG 721

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 81  AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA 114
            +N+L++ +CKAG ++EA  + +EM+  G EPD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 156 IRKLCKNEKVEEAYQLLDEMIERGA--NPDEWSYNAILAYHCDRAEVNMALRLITRMTKE 213
           I KL    +  EA +L  E++E G        +Y+A++        +     +   +   
Sbjct: 94  IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152

Query: 214 NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 273
              PD++  N VL + V+ G    A  +++ M +R       ++  ++ GL    G   E
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDA-GNYRE 207

Query: 274 ACKYFEMMVDEG-IPPYSSTVEMLR 297
           A   F  M ++G      + V MLR
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLR 232

Length = 697

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.4 bits (80), Expect = 0.003
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 83  NSLLEAMCKAGNIDEAHGMLREMRSIG 109
           NSL+   CKAG ++EA  + +EM+  G
Sbjct: 4   NSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
KOG1126	638	consensus DNA-binding cell division cycle control	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.69
KOG2076	895	consensus RNA polymerase III transcription factor	99.68
KOG1126	638	consensus DNA-binding cell division cycle control	99.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.63
PRK12370	553	invasion protein regulator; Provisional	99.61
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.61
PRK12370	553	invasion protein regulator; Provisional	99.6
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.59
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.57
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.56
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.53
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
PF13041	50	PPR_2: PPR repeat family	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.4
PF13041	50	PPR_2: PPR repeat family	99.4
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.39
KOG2003	840	consensus TPR repeat-containing protein [General f	99.38
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.38
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.38
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.37
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.34
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.28
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.26
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.25
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.23
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.21
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.18
KOG1125	579	consensus TPR repeat-containing protein [General f	99.14
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.12
PLN02789	320	farnesyltranstransferase	99.12
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.06
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.05
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.04
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.03
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.02
PLN02789	320	farnesyltranstransferase	99.01
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.01
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.0
KOG1125	579	consensus TPR repeat-containing protein [General f	98.97
PRK04841	903	transcriptional regulator MalT; Provisional	98.95
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.93
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.93
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
PF12854	34	PPR_1: PPR repeat	98.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
PRK15359	144	type III secretion system chaperone protein SscB;	98.83
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.81
PRK15359	144	type III secretion system chaperone protein SscB;	98.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.81
PRK04841	903	transcriptional regulator MalT; Provisional	98.79
PF12854	34	PPR_1: PPR repeat	98.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.71
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.67
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.6
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.58
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.57
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.57
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.46
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.4
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.39
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.37
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.37
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.35
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.34
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.32
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.3
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.29
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.24
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.23
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.23
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.22
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.2
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.19
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.16
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.14
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.09
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.06
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.0
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.99
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.98
KOG0553	304	consensus TPR repeat-containing protein [General f	97.97
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.97
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.95
KOG0553	304	consensus TPR repeat-containing protein [General f	97.93
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.92
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.9
PF12688	120	TPR_5: Tetratrico peptide repeat	97.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
PF12688	120	TPR_5: Tetratrico peptide repeat	97.8
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.73
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.68
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.67
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.65
PRK10803	263	tol-pal system protein YbgF; Provisional	97.63
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.62
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.59
PRK10803	263	tol-pal system protein YbgF; Provisional	97.52
PRK15331	165	chaperone protein SicA; Provisional	97.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.47
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.46
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.41
PF13371	73	TPR_9: Tetratricopeptide repeat	97.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.41
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.35
PF13371	73	TPR_9: Tetratricopeptide repeat	97.3
PRK15331	165	chaperone protein SicA; Provisional	97.3
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.19
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.13
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.08
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.03
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.98
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.98
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.94
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.91
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.8
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.75
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.67
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.59
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.52
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.51
PF13428	44	TPR_14: Tetratricopeptide repeat	96.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.45
KOG4555	175	consensus TPR repeat-containing protein [Function	96.42
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.3
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.25
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.23
PF13428	44	TPR_14: Tetratricopeptide repeat	96.23
KOG3941	406	consensus Intermediate in Toll signal transduction	96.23
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.22
PF13512	142	TPR_18: Tetratricopeptide repeat	96.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.09
PF13512	142	TPR_18: Tetratricopeptide repeat	96.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.08
KOG3941	406	consensus Intermediate in Toll signal transduction	96.06
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.05
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.99
KOG4555	175	consensus TPR repeat-containing protein [Function	95.95
PRK11906	458	transcriptional regulator; Provisional	95.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.82
KOG1585	308	consensus Protein required for fusion of vesicles	95.75
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.71
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.63
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.61
PRK11906	458	transcriptional regulator; Provisional	95.44
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.29
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.14
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.14
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.12
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.99
KOG1258	577	consensus mRNA processing protein [RNA processing	94.97
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.86
PF13431	34	TPR_17: Tetratricopeptide repeat	94.82
KOG1585	308	consensus Protein required for fusion of vesicles	94.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.66
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.57
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.47
PF13431	34	TPR_17: Tetratricopeptide repeat	94.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.41
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.29
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.01
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.67
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.39
KOG4234	271	consensus TPR repeat-containing protein [General f	93.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.01
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.91
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.85
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.67
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.63
PF13929	292	mRNA_stabil: mRNA stabilisation	92.6
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.58
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	92.47
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.32
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.0
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.88
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.88
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.73
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.71
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.59
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.57
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.55
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.33
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.11
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	91.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.7
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.47
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.38
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.29
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.23
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.08
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.06
KOG4234	271	consensus TPR repeat-containing protein [General f	89.77
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.54
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.43
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.34
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.23
COG5159	421	RPN6 26S proteasome regulatory complex component [	89.07
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.98
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.47
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	88.33
PF13929	292	mRNA_stabil: mRNA stabilisation	88.19
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	88.12
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.75
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.61
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.27
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.5
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.43
COG3947	361	Response regulator containing CheY-like receiver a	86.12
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.97
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	85.57
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.42
PRK09687	280	putative lyase; Provisional	85.02
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	84.53
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.86
PF13762	145	MNE1: Mitochondrial splicing apparatus component	83.78
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	83.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.21
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	83.11
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.07
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	82.69
PRK09687	280	putative lyase; Provisional	82.31
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	82.24
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.21
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	82.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	81.85
KOG3364	149	consensus Membrane protein involved in organellar	81.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.04
KOG1258	577	consensus mRNA processing protein [RNA processing	80.36
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	80.01

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-56  Score=407.30  Aligned_cols=333  Identities=19%  Similarity=0.307  Sum_probs=306.5

Q ss_pred             CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782            1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI   79 (350)
Q Consensus         1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   79 (350)
                      |++.|+.||..+|+.+|.+|++.|+++.|.++|+.|.. +..||..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus       463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~  542 (1060)
T PLN03218        463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR  542 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence            56789999999999999999999999999999999876 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRS--IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      .+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            9999999999999999999999999976  57889999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  237 (350)
                      +|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus       623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee  702 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK  702 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      |.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|...|+.||..+|..++.+|.+.|++++|.+++++|.
T Consensus       703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~  781 (1060)
T PLN03218        703 ALELYEDIKSIKLRPTVSTMNALITALCEG-NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK  781 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999889999999999999999877 9999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHhccc
Q 018782          318 RSTSCTIQELANAMRGK  334 (350)
Q Consensus       318 ~~~~~~~~~~~~~l~~~  334 (350)
                      +.+..++..+++.++..
T Consensus       782 k~Gi~pd~~tynsLIgl  798 (1060)
T PLN03218        782 EDGIKPNLVMCRCITGL  798 (1060)
T ss_pred             HcCCCCCHHHHHHHHHH
Confidence            98888888888777644

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.9e-56  Score=402.98  Aligned_cols=339  Identities=18%  Similarity=0.293  Sum_probs=329.3

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      ||..+|+.++.+|++.|+++.|.++|+.|.. +..|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI  514 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI  514 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            8999999999999999999999999999987 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCCCccHHHHHHHHHHHHccCC
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR--YNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      .+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|+
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999976  6789999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      +++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus       595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e  674 (1060)
T PLN03218        595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       245 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      |.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...+..|+
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~-G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNA-KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999987 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccccccchhhc
Q 018782          325 QELANAMRGKTGFRKSRSEETEL  347 (350)
Q Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~  347 (350)
                      ...++.++..+...+...++.++
T Consensus       754 ~~Ty~sLL~a~~k~G~le~A~~l  776 (1060)
T PLN03218        754 TITYSILLVASERKDDADVGLDL  776 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999988877776654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-51  Score=371.70  Aligned_cols=335  Identities=19%  Similarity=0.268  Sum_probs=246.9

Q ss_pred             CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782            1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL   80 (350)
Q Consensus         1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   80 (350)
                      |++.|+.||..+|+.++..|++.|+++.|.++|+.|..   |+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus       149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~  225 (697)
T PLN03081        149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR  225 (697)
T ss_pred             HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence            45667888888888888888888888888888888763   677888888888888888888888888888777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC  160 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (350)
                      +|+.++.+|...|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+.|..    +|..+|+.++.+|+
T Consensus       226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~  301 (697)
T PLN03081        226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA  301 (697)
T ss_pred             hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence            77666666666666666666666666666666666777777777777777777777777753    56777777777777


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782          161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE  240 (350)
Q Consensus       161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  240 (350)
                      +.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.+
T Consensus       302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~  381 (697)
T PLN03081        302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN  381 (697)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc-c
Q 018782          241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER-S  319 (350)
Q Consensus       241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~  319 (350)
                      +|++|.+    ||..+|+.+|.+|++. |+.++|.++|++|.+.|+.||..||..++.+|.+.|+.++|.++|+.|.+ .
T Consensus       382 vf~~m~~----~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~  456 (697)
T PLN03081        382 VFDRMPR----KNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH  456 (697)
T ss_pred             HHHhCCC----CCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence            7777653    5667777777777765 77777777777777777777777777777777777777777777777754 3


Q ss_pred             CCCcHHHHHHHhcccccccccccchhhc
Q 018782          320 TSCTIQELANAMRGKTGFRKSRSEETEL  347 (350)
Q Consensus       320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (350)
                      +..|....++.++..+++.+..+++.++
T Consensus       457 g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        457 RIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            5555555666666666666665555443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.2e-50  Score=368.44  Aligned_cols=339  Identities=17%  Similarity=0.228  Sum_probs=269.5

Q ss_pred             CCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782            2 VEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA   81 (350)
Q Consensus         2 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   81 (350)
                      ++.|+.||..+++.++.+|++.|+++.|.++|+.|.   .++..+|+.++.+|++.|++++|+++|++|.+.|+.||..+
T Consensus       214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t  290 (857)
T PLN03077        214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT  290 (857)
T ss_pred             HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence            456777888888888888999999999999999886   36788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                      |+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|..    ||..+|+.++.+|++
T Consensus       291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~  366 (857)
T PLN03077        291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK  366 (857)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence            9999999888888888888888888888888888888888888888888888888888753    577778888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      .|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v  446 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV  446 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888888888877777887777777777777777777777777777777777766666666666666666666666


Q ss_pred             HHHHHhc------------------------------CC-----------------------------------------
Q 018782          242 WESMEKR------------------------------GF-----------------------------------------  250 (350)
Q Consensus       242 ~~~~~~~------------------------------~~-----------------------------------------  250 (350)
                      |++|.+.                              ++                                         
T Consensus       447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~  526 (857)
T PLN03077        447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL  526 (857)
T ss_pred             HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence            6554321                              12                                         


Q ss_pred             ------------------------CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782          251 ------------------------YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       251 ------------------------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  306 (350)
                                              .||..+|+.+|.+|+.. |+.++|.++|++|.+.|+.||..||..++.+|.+.|++
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV  605 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence                                    34455666777777766 88888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHhh-ccCCCcHHHHHHHhcccccccccccchhhcc
Q 018782          307 DIIEILADKME-RSTSCTIQELANAMRGKTGFRKSRSEETELE  348 (350)
Q Consensus       307 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (350)
                      ++|.++|+.|. +.+..|....++.++..+.+.+..+++.++-
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~  648 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI  648 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence            88888888887 5666777777788888888777777766553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.5e-49  Score=354.18  Aligned_cols=330  Identities=18%  Similarity=0.241  Sum_probs=309.8

Q ss_pred             CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018782            5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHN   83 (350)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   83 (350)
                      ++.||..+|+.++.+|++.++++.+.+++..+.. +..|+..+|+.++.+|++.|+++.|.++|++|.+    ||..+|+
T Consensus       118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n  193 (697)
T PLN03081        118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG  193 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence            4789999999999999999999999999999876 8889999999999999999999999999999964    6889999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782           84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE  163 (350)
Q Consensus        84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  163 (350)
                      .++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|
T Consensus       194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g  273 (697)
T PLN03081        194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG  273 (697)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782          164 KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE  243 (350)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  243 (350)
                      ++++|.++|++|..    +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus       274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~  349 (697)
T PLN03081        274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA  349 (697)
T ss_pred             CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999999864    58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          244 SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       244 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      .|.+.|+.||..+++.++.+|++. |++++|.++|++|.    .||..+|+.++.+|++.|+.++|.++|++|.+.+..|
T Consensus       350 ~m~~~g~~~d~~~~~~Li~~y~k~-G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P  424 (697)
T PLN03081        350 GLIRTGFPLDIVANTALVDLYSKW-GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP  424 (697)
T ss_pred             HHHHhCCCCCeeehHHHHHHHHHC-CCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999986 99999999999995    4788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccccccccchhhc
Q 018782          324 IQELANAMRGKTGFRKSRSEETEL  347 (350)
Q Consensus       324 ~~~~~~~l~~~~~~~~~~~~~~~~  347 (350)
                      +...++.++.++...+..+++.++
T Consensus       425 d~~T~~~ll~a~~~~g~~~~a~~~  448 (697)
T PLN03081        425 NHVTFLAVLSACRYSGLSEQGWEI  448 (697)
T ss_pred             CHHHHHHHHHHHhcCCcHHHHHHH
Confidence            999999999999988887776654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.3e-48  Score=357.80  Aligned_cols=334  Identities=17%  Similarity=0.242  Sum_probs=221.2

Q ss_pred             CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782            1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI   79 (350)
Q Consensus         1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   79 (350)
                      |.+.|++||..||+.++.+|++.|+++.|.+++..+.+ +..|+..+|+.++.+|++.|++++|.++|++|..    ||.
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~  354 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA  354 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence            34455566666666666665555555555555555544 5555555555555555555555555555555542    355


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL  159 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (350)
                      .+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+|+.|+.+|
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HccCCHHHHHHHHHHHHHc------------------------------CCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782          160 CKNEKVEEAYQLLDEMIER------------------------------GANPDEWSYNAILAYHCDRAEVNMALRLITR  209 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  209 (350)
                      ++.|++++|.++|++|.+.                              ++.||..||+.++.+|++.|+.+.+.+++..
T Consensus       435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            5555555555555444321                              2445555555554444444444444443333


Q ss_pred             HHhCCC------------------------------CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHH
Q 018782          210 MTKENV------------------------------MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSV  259 (350)
Q Consensus       210 ~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  259 (350)
                      +.+.|+                              .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus       515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~  594 (857)
T PLN03077        515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS  594 (857)
T ss_pred             HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence            333322                              45667788999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccccccc
Q 018782          260 MVHGLCKKKGKLEEACKYFEMMV-DEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFR  338 (350)
Q Consensus       260 ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  338 (350)
                      ++.+|+.. |++++|.++|+.|. +.|+.|+..+|..++.++.+.|++++|.+++++|.   ..|+..+++.++.++...
T Consensus       595 ll~a~~~~-g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~  670 (857)
T PLN03077        595 LLCACSRS-GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIH  670 (857)
T ss_pred             HHHHHhhc-ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Confidence            99998866 99999999999999 78999999999999999999999999999999995   334455666666666554


Q ss_pred             cccc
Q 018782          339 KSRS  342 (350)
Q Consensus       339 ~~~~  342 (350)
                      +..+
T Consensus       671 ~~~e  674 (857)
T PLN03077        671 RHVE  674 (857)
T ss_pred             CChH
Confidence            4443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=1.6e-23  Score=178.29  Aligned_cols=301  Identities=13%  Similarity=0.098  Sum_probs=248.9

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAMCKAG   93 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~   93 (350)
                      ...+...|++++|...|+++....|.+..++..+...+...|++++|..+++.+...+..++   ...+..++..+...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            34556789999999999999887788888999999999999999999999999987632222   356788899999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHccCCHHHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKLCKNEKVEEAY  169 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~  169 (350)
                      ++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|.
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999998763 45677899999999999999999999999987653222    224566778889999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782          170 QLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG  249 (350)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  249 (350)
                      ..++++.+.... +...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+. 
T Consensus       201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  278 (389)
T PRK11788        201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-  278 (389)
T ss_pred             HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            999999887533 566788888999999999999999999987643333567888999999999999999999999886 


Q ss_pred             CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHhhccCCCcH
Q 018782          250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG---LGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                       .|+...+..+...+... |++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.+....+.
T Consensus       279 -~p~~~~~~~la~~~~~~-g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        279 -YPGADLLLALAQLLEEQ-EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             -CCCchHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence             56766777777777766 9999999999999886  4788888887777664   5589999999999887544433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=4.2e-23  Score=194.45  Aligned_cols=328  Identities=14%  Similarity=0.108  Sum_probs=228.6

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+...|++++|..+++.+....+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus       566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  644 (899)
T TIGR02917       566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA  644 (899)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            344455566666666666666666666666556666667777777777777777777777766553 2355666666667


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                      +...|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence            777777777777777766642 3345566667777777777777777777776654 44566677777777777888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ...++.+...+  |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.
T Consensus       723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            88887777664  344566667777778888888888888777754 346677777888888888888888888888775


Q ss_pred             CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782          249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA  328 (350)
Q Consensus       249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  328 (350)
                      . +++...+..+...+... |+ .+|+.+++++.... +.++.++..+..++...|++++|.++++++.+.++..+ .+.
T Consensus       800 ~-p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~  874 (899)
T TIGR02917       800 A-PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA-AIR  874 (899)
T ss_pred             C-CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHH
Confidence            3 34566677777766655 77 77888888887764 56677778888888899999999999999988877644 445


Q ss_pred             HHhcccccccccccchhhc
Q 018782          329 NAMRGKTGFRKSRSEETEL  347 (350)
Q Consensus       329 ~~l~~~~~~~~~~~~~~~~  347 (350)
                      ..+...+...+...++.++
T Consensus       875 ~~l~~~~~~~g~~~~A~~~  893 (899)
T TIGR02917       875 YHLALALLATGRKAEARKE  893 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            5555556656666655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=2.3e-22  Score=189.50  Aligned_cols=312  Identities=13%  Similarity=0.089  Sum_probs=178.1

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      ++++.++..+...+...|++++|.+.|+++....|.+...+..++..+...|++++|.+.|+++.+.+. .+..++..+.
T Consensus       462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~  540 (899)
T TIGR02917       462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALA  540 (899)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence            445555666666666666666666666665554455555555555555555555555555555554422 2444444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC---------------------------------CCCCHhhHHHHHHHHHhcCCHhHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIG---------------------------------AEPDAFSYSIFIHAFCEANDIHSV  133 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a  133 (350)
                      ..+.+.|+.++|...++++.+.+                                 .+.+..+|..+..++...|++++|
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  620 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA  620 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            44444444444444444443322                                 123344555555555555555555


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782          134 FRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE  213 (350)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  213 (350)
                      ...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.... +..++..+...+...|++++|.++++.+...
T Consensus       621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55555554432 233444555555555555555555555555544322 3445555555555555666666655555554


Q ss_pred             CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 018782          214 NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTV  293 (350)
Q Consensus       214 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  293 (350)
                      + +.+...+..+...+...|++++|...|+.+...  .|+..++..+...+... |++++|.+.++++.+.. +.+...+
T Consensus       699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~-~~~~~~~  773 (899)
T TIGR02917       699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTH-PNDAVLR  773 (899)
T ss_pred             C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            3 234455666666666777777777777776654  34445555555555544 77777777777777664 5667777


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          294 EMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       294 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      ..+...|...|++++|..+++++.+..+..+..
T Consensus       774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  806 (899)
T TIGR02917       774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV  806 (899)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence            777777777788888888887777766655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=6.1e-22  Score=168.66  Aligned_cols=287  Identities=14%  Similarity=0.116  Sum_probs=237.2

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP----TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHN   83 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   83 (350)
                      .+..++..+...+...|++++|..+++.+......    ....+..++..+...|++++|..+|+++.+.. +.+..+++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~  145 (389)
T PRK11788         67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ  145 (389)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence            34567888899999999999999999998763211    13568889999999999999999999999863 44788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782           84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL  159 (350)
Q Consensus        84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (350)
                      .++..+...|++++|.+.++.+.+.+..+..    ..+..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  224 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence            9999999999999999999999886533321    245567778889999999999999998764 34567888889999


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782          160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  239 (350)
                      .+.|++++|.+.++++.+.+......++..+..+|...|++++|...++.+.+..  |+...+..++..+.+.|++++|.
T Consensus       225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999987544335678889999999999999999999998863  56667788999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782          240 EVWESMEKRGFYPSVSTYSVMVHGLCKK--KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  306 (350)
                      .+++++.+.  .|+...+..++..++..  .|+.++++.+++++.+.++.|++.      ..|..+|..
T Consensus       303 ~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~  363 (389)
T PRK11788        303 ALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT  363 (389)
T ss_pred             HHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence            999999875  68999999888776642  358999999999999888777776      335555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=4.7e-20  Score=164.82  Aligned_cols=306  Identities=10%  Similarity=0.029  Sum_probs=217.1

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ++..+..++.+....|+++.|...|+++....|.+...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus        75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~  153 (656)
T PRK15174         75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT  153 (656)
T ss_pred             chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            344555566666778888888888888877777778888888888888888888888888887763 3366777778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                      +...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|
T Consensus       154 l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA  231 (656)
T PRK15174        154 LVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA  231 (656)
T ss_pred             HHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence            88888888888888877665322 22333333 34677788888888888876654223444445556777788888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH----HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM----ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      ...++++.+.... +...+..+...+...|++++    |...++.+....+ .+...+..+...+...|++++|...+++
T Consensus       232 ~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        232 IQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888876533 56677777788888888775    7888888877543 3566777888888888888888888888


Q ss_pred             HHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          245 MEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       245 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      ..+.  .|+ ...+..+...+... |++++|...++++...+ +.+...+..+..++...|+.++|...+++..+..+..
T Consensus       310 al~l--~P~~~~a~~~La~~l~~~-G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        310 SLAT--HPDLPYVRAMYARALRQV-GQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            8875  344 33444445555444 88888888888887764 3333444455677888888888888888877665443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=8.3e-20  Score=163.26  Aligned_cols=303  Identities=9%  Similarity=0.041  Sum_probs=253.2

Q ss_pred             HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782           14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG   93 (350)
Q Consensus        14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (350)
                      ..++..+.+.|+++.|..+++.+....|.+...+..++.+....|+++.|...++++....+ .+...+..+...+...|
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence            34567788899999999999999988888899999999999999999999999999998743 37788999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      ++++|...++++.+.. +.+...+..+...+...|+.++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus       125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            9999999999999863 3456788889999999999999999999887654 2333444333 34788999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH----HHHHHHHHHhcC
Q 018782          174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR----ATEVWESMEKRG  249 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~  249 (350)
                      .+.+....++...+..+..++...|++++|...++.+..... .+...+..+...+...|++++    |...|+++.+. 
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-  279 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-  279 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence            988775444555556667788899999999999999998753 467778889999999999986    89999999876 


Q ss_pred             CCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          250 FYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       250 ~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                       .|+ ...+..+...+... |++++|...++++.... |.+...+..+..++.+.|++++|...++++...++....
T Consensus       280 -~P~~~~a~~~lg~~l~~~-g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        280 -NSDNVRIVTLYADALIRT-GQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             -CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence             344 55666666666655 99999999999999886 667888899999999999999999999999987776643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=5.7e-18  Score=151.83  Aligned_cols=309  Identities=15%  Similarity=0.041  Sum_probs=201.7

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH---------------
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEM---------------   70 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------   70 (350)
                      +.|++..|..+..++...|++++|+..++......|.+...+..+..++...|++++|+..|..+               
T Consensus       156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~  235 (615)
T TIGR00990       156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV  235 (615)
T ss_pred             cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            45677777778888888888888888888877766777777777777777777777776543322               


Q ss_pred             --------------------------------------------------------------------------------
Q 018782           71 --------------------------------------------------------------------------------   70 (350)
Q Consensus        71 --------------------------------------------------------------------------------   70 (350)
                                                                                                      
T Consensus       236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~  315 (615)
T TIGR00990       236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR  315 (615)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence                                                                                            


Q ss_pred             -----HhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782           71 -----LERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus        71 -----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                           .+.+  .+.....|+.+..++...|++++|+..|++..+.. +.....|..+...+...|++++|...|++..+.
T Consensus       316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                 1111  01122334445555556677777777777766642 223446666666777777777777777777665


Q ss_pred             CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782          144 NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN  223 (350)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  223 (350)
                      . +.+..+|..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..++...... +.+...++
T Consensus       395 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~  471 (615)
T TIGR00990       395 N-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYN  471 (615)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence            3 345666777777777777777777777777766432 45556666677777777777777777776643 23456777


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH------HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782          224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSVS------TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLR  297 (350)
Q Consensus       224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  297 (350)
                      .+..++...|++++|...|++........+..      .++.... +....|++++|..++++....+ +.+...+..+.
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~-~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la  549 (615)
T TIGR00990       472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA-LFQWKQDFIEAENLCEKALIID-PECDIAVATMA  549 (615)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            77777778888888888887777542111111      1111111 2222378888888888877665 44556677788


Q ss_pred             HHHHcCCChhHHHHHHHHhhccC
Q 018782          298 NRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       298 ~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      +.+.+.|++++|.++|++..+..
T Consensus       550 ~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       550 QLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHh
Confidence            88888888888888888776553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=2.2e-17  Score=148.03  Aligned_cols=302  Identities=15%  Similarity=0.044  Sum_probs=237.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      +......+.+.|+++.|+..|++.... .|++..|..+..+|...|++++|++.++..++... .+...|..+..++...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence            445667888999999999999998764 35688899999999999999999999999998743 3678899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCC-----------------------------CCCHhhHHHHHH---------------------
Q 018782           93 GNIDEAHGMLREMRSIGA-----------------------------EPDAFSYSIFIH---------------------  122 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~---------------------  122 (350)
                      |++++|+..|..+...+.                             +++...+..+..                     
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD  287 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence            999999876654432110                             000000000000                     


Q ss_pred             ---------HH------HhcCCHhHHHHHHHHHhhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 018782          123 ---------AF------CEANDIHSVFRVLDSMKRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEW  185 (350)
Q Consensus       123 ---------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  185 (350)
                               ..      ...+++++|...|+...+.+  .+.....+..+...+...|++++|...+++..+..+. ...
T Consensus       288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~  366 (615)
T TIGR00990       288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ  366 (615)
T ss_pred             cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence                     00      11257888999999988754  2334567888888999999999999999999987433 466


Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018782          186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGL  264 (350)
Q Consensus       186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~  264 (350)
                      .|..+...+...|++++|...++.+.+... .+...|..+...+...|++++|...|++..+.  .|+ ...+..+...+
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~  443 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence            788888889999999999999999988643 46788999999999999999999999999986  444 44555555555


Q ss_pred             hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782          265 CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      ... |++++|+..|++..... |.++..+..+..++...|++++|.+.|++.....+.
T Consensus       444 ~~~-g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       444 YKE-GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHC-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence            544 99999999999998875 667899999999999999999999999998876554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=6e-17  Score=154.51  Aligned_cols=98  Identities=9%  Similarity=0.028  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782          220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR  299 (350)
Q Consensus       220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  299 (350)
                      ..+..+...+.+.|++++|...|+++.+... .+...+..+...+... |++++|...++.+.+.. +.+..++..+..+
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~  680 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQ-GDLAAARAQLAKLPATA-NDSLNTQRRVALA  680 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccC-CCChHHHHHHHHH
Confidence            3444555666677777777777777776421 2455556666666555 77777777777766553 4455666667777


Q ss_pred             HHcCCChhHHHHHHHHhhccC
Q 018782          300 LVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       300 ~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      +...|++++|.++++++....
T Consensus       681 ~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhhC
Confidence            777777777777777776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=8.7e-18  Score=139.66  Aligned_cols=304  Identities=13%  Similarity=0.069  Sum_probs=243.7

Q ss_pred             HHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018782           20 LCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   99 (350)
                      +...|++.+|..-|.+....-|.-...|..|...+-..|+...|++.|++..+..+. -...|..|...|...+.++.|+
T Consensus       194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHH
Confidence            334566666666666665544555667778888888888888888888888876322 4677888888999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      ..|.+..... +.....+..+...|...|+++.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.|.+.....
T Consensus       273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            9998888753 2345577778888888999999999999998764 3346789999999999999999999999998875


Q ss_pred             CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHH
Q 018782          180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV-STYS  258 (350)
Q Consensus       180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~  258 (350)
                      .. .....+.|...+...|.++.|..+|....+-.. --...++.|...|-+.|++++|...|++...  +.|+. ..++
T Consensus       351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~  426 (966)
T KOG4626|consen  351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS  426 (966)
T ss_pred             Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence            43 567788899999999999999999999887532 2245788899999999999999999999887  46764 4566


Q ss_pred             HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhc
Q 018782          259 VMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMR  332 (350)
Q Consensus       259 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  332 (350)
                      .+-..|-.. |+.+.|+..+.+.+..+ |.-...+..|...|...|+..+|+.-+++..+..|..++...|.+.
T Consensus       427 NmGnt~ke~-g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh  498 (966)
T KOG4626|consen  427 NMGNTYKEM-GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH  498 (966)
T ss_pred             hcchHHHHh-hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence            666666545 99999999999999876 5567889999999999999999999999999998988888776643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.83  E-value=2.2e-16  Score=150.71  Aligned_cols=304  Identities=13%  Similarity=0.078  Sum_probs=213.6

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CHHHH------------H
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-DILAH------------N   83 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~   83 (350)
                      ...+...|++++|+..|++.....|.+...+..+..++.+.|++++|+..|++..+..... ....|            .
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            4556778999999999999888778889999999999999999999999999988764332 11112            1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH--------
Q 018782           84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI--------  155 (350)
Q Consensus        84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------  155 (350)
                      .....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+        
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            22456778899999999999999864 3456677788899999999999999999987753 2233333322        


Q ss_pred             ----------------------------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782          156 ----------------------------------IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN  201 (350)
Q Consensus       156 ----------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  201 (350)
                                                        ...+...|++++|...+++..+..+. +...+..+...+.+.|+++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence                                              23344568888888888888876543 5666777788888888888


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc---------------------------------
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR---------------------------------  248 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------  248 (350)
                      +|...++.+.+... .+...+..+...+...++.++|...++.+...                                 
T Consensus       513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            88888888776432 23333333333333444444444443332110                                 


Q ss_pred             ------CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782          249 ------GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       249 ------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                            ...++...+..+...+... |++++|+..|+++.+.. |.+...+..++..+...|++++|.+.++.+.+..+.
T Consensus       592 A~~~l~~~p~~~~~~~~La~~~~~~-g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~  669 (1157)
T PRK11447        592 AEALLRQQPPSTRIDLTLADWAQQR-GDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND  669 (1157)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence                  0122333344444444444 89999999999988876 677888889999999999999999999988876655


Q ss_pred             cHHH
Q 018782          323 TIQE  326 (350)
Q Consensus       323 ~~~~  326 (350)
                      ....
T Consensus       670 ~~~~  673 (1157)
T PRK11447        670 SLNT  673 (1157)
T ss_pred             ChHH
Confidence            5443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=3.1e-16  Score=143.36  Aligned_cols=315  Identities=11%  Similarity=0.026  Sum_probs=217.5

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      .+...+..+..++...|++++|.++|+.+....|.++..+..++.++...|++++|+..++++.+.. +.+.. +..+..
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~  124 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY  124 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence            3444578888888999999999999999887778888888888889999999999999999988873 33566 888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH--------------------------------
Q 018782           88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR--------------------------------  135 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--------------------------------  135 (350)
                      ++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+.                                
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            8889999999999999998863 2244444555555555555544443                                


Q ss_pred             --------------HHHHHhhC-CCCccHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 018782          136 --------------VLDSMKRY-NLVPNVF-TY----NCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYH  194 (350)
Q Consensus       136 --------------~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~  194 (350)
                                    .++.+.+. ...|+.. .+    ...+.++...|++++|...|+.+.+.+.. |+. .-..+..++
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y  282 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY  282 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence                          33333321 1112111 11    11123445668888899999888876532 322 222246678


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-----------CCCH---HHH
Q 018782          195 CDRAEVNMALRLITRMTKENVMP---DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-----------YPSV---STY  257 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~  257 (350)
                      ...|++++|+..|+.+.......   .......+..++...|++++|..+++.+.+...           .|+.   ..+
T Consensus       283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~  362 (765)
T PRK10049        283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ  362 (765)
T ss_pred             HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence            88889999999988877643211   123455666677888999999999888876421           1231   122


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA  328 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  328 (350)
                      ..+...+... |++++|++.++++.... |.+...+..+...+...|++++|++.+++.....|.......
T Consensus       363 ~~~a~~l~~~-g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~  431 (765)
T PRK10049        363 SLLSQVAKYS-NDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV  431 (765)
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence            3333444444 88999999998888775 777888888888888889999999999888887777655433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-17  Score=136.89  Aligned_cols=324  Identities=14%  Similarity=0.140  Sum_probs=222.9

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA-HNSLLE   87 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~   87 (350)
                      -.++|..+...+...|+++.|+.+++.+....|.....|..+..++...|+.+.|.+.|.+.++.+  |+... ...+..
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn  192 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence            457788899999999999999999999988778889999999999999999999999998887753  33222 222333


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC--------------------------------CCCC-HhhHHHHHHHHHhcCCHhHHH
Q 018782           88 AMCKAGNIDEAHGMLREMRSIG--------------------------------AEPD-AFSYSIFIHAFCEANDIHSVF  134 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~  134 (350)
                      ..-..|+..+|...|.+.++..                                +.|+ ...|-.|...|...+.++.|.
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence            3333455555555544444321                                1122 224444555555555555555


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      ..|.+..... +....++..+...|...|..+-|+..|++.++..+. =...|+.+..++-..|++.+|.+.+.+.+...
T Consensus       273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            5555544432 223445555555566667777777777777765322 25678888888888888888888888888753


Q ss_pred             CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782          215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE  294 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  294 (350)
                      . ......+.|...+...|.++.|.++|....+.  .|....-..-+....++.|++++|+..+++.++-. |.-...|.
T Consensus       351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~  426 (966)
T KOG4626|consen  351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALS  426 (966)
T ss_pred             C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHH
Confidence            2 34567788888899999999999999888764  56554433333344556699999999999988764 44467899


Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcccccccccc
Q 018782          295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSR  341 (350)
Q Consensus       295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  341 (350)
                      .+...|...|+.+.|...+.+...-+|...+...| |...+...+.-
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN-Lasi~kDsGni  472 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN-LASIYKDSGNI  472 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh-HHHHhhccCCc
Confidence            99999999999999999999998877766555433 33334444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=1.5e-15  Score=138.96  Aligned_cols=315  Identities=11%  Similarity=0.041  Sum_probs=234.6

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      +.++..+..+...+...|++++|+..++++....|.+.. +..+..++...|+.++|+..++++.+..+. +...+..+.
T Consensus        80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la  157 (765)
T PRK10049         80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYV  157 (765)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            345666778888899999999999999999887788888 999999999999999999999999987443 666666677


Q ss_pred             HHHHhcCCHHHHHHHH----------------------------------------------HHHHhC-CCCCCHh-hHH
Q 018782           87 EAMCKAGNIDEAHGML----------------------------------------------REMRSI-GAEPDAF-SYS  118 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~-~~~  118 (350)
                      .++...+..+.|+..+                                              +.+.+. ...|+.. .+.
T Consensus       158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~  237 (765)
T PRK10049        158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ  237 (765)
T ss_pred             HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence            7666666655444433                                              344322 1112211 111


Q ss_pred             ----HHHHHHHhcCCHhHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 018782          119 ----IFIHAFCEANDIHSVFRVLDSMKRYNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP---DEWSYNAI  190 (350)
Q Consensus       119 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l  190 (350)
                          ..+..+...|+.++|+..|+.+.+.+.+ |+ .....+..+|...|++++|...|+++.+.....   .......+
T Consensus       238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L  316 (765)
T PRK10049        238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL  316 (765)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence                1133445778999999999999887522 22 222335778999999999999999988754221   13456667


Q ss_pred             HHHHhcccCHHHHHHHHHHHHhCCC-----------CCC---hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH
Q 018782          191 LAYHCDRAEVNMALRLITRMTKENV-----------MPD---RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVST  256 (350)
Q Consensus       191 l~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  256 (350)
                      ..++...+++++|...++.+....+           .|+   ...+..+...+...|++++|+++++++.... +.+...
T Consensus       317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l  395 (765)
T PRK10049        317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL  395 (765)
T ss_pred             HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            7788999999999999999887532           123   1245667788999999999999999998762 234555


Q ss_pred             HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782          257 YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL  327 (350)
Q Consensus       257 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  327 (350)
                      +..+...+... |++++|++.+++..... |.+...+...+..+.+.|++++|..+++++.+..|..+...
T Consensus       396 ~~~lA~l~~~~-g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        396 RIDYASVLQAR-GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            56666665555 99999999999999886 66788888899999999999999999999998877766443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.2e-14  Score=116.03  Aligned_cols=241  Identities=18%  Similarity=0.341  Sum_probs=190.2

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS   84 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   84 (350)
                      .+-+..+|..+|..+|+-...+.|.+++++... ..+....+||.+|.+-.-..    ..+++.+|......||..|+|+
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence            355788999999999999999999999999765 67788899999988764332    3789999999999999999999


Q ss_pred             HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH-HHHHHHHHhhC----CC----CccHHH
Q 018782           85 LLEAMCKAGNIDE----AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHS-VFRVLDSMKRY----NL----VPNVFT  151 (350)
Q Consensus        85 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~  151 (350)
                      ++.+..+.|+++.    |.+++.+|++.|++|...+|..++..+.+.++..+ +..++.++...    .+    +.+...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            9999999998754    56778889999999999999999999998887644 45555554321    11    235566


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIER----GANPD---EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNM  224 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  224 (350)
                      |...+..|.+..+.+-|.++..-+...    -+.|+   ..-|..+....++....+.....++.++..-+-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            778888888888888888887665532    12222   23366677777888888889999999988877788888888


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKRGF  250 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~~~  250 (350)
                      ++++....|.++-..++|..++..|.
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhh
Confidence            88988888988888888888876653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.77  E-value=9.7e-15  Score=123.61  Aligned_cols=283  Identities=10%  Similarity=0.042  Sum_probs=211.1

Q ss_pred             cCChHHHHHHHHHhhhcCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFTPTVKTY-SILVRGLGDVGELSEARKLFDEMLERKCPVDILAH--NSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~   99 (350)
                      .|+++.|.+......... +++..+ .....+..+.|+++.|.+.+.++.+.  .|+....  ......+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            699999998888765432 233443 33455558899999999999999875  3444332  24467888999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-------HHHHHHHHHHHccCCHHHHHHHH
Q 018782          100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-------FTYNCIIRKLCKNEKVEEAYQLL  172 (350)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~  172 (350)
                      ..++++.+.. +-+......+...|.+.|+++++..++..+.+.+..++.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999998875 446778888999999999999999999999887644322       13333444444455566677777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          173 DEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      +.+.+.- +.++.....+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.  .|
T Consensus       253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P  325 (398)
T PRK10747        253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG  325 (398)
T ss_pred             HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence            7765442 347788888999999999999999999998874  4554322  333444569999999999998876  56


Q ss_pred             CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      +.......+...+...+++++|.+.|+.+.+.  .|+...+..+..++.+.|+.++|..++++-..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66555544444455559999999999999886  48899989999999999999999999997643

>TIGR00540 hemY_coli hemY protein

Probab=99.77  E-value=9.3e-15  Score=124.36  Aligned_cols=291  Identities=11%  Similarity=0.038  Sum_probs=209.7

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      ...|+++.|.+.+.+..+..+.....+-....+....|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            45899999999998876644444555666678888999999999999998776433333344446888889999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHH-HHHHHH---HccCCHHHHHHHHHHHH
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYN-CIIRKL---CKNEKVEEAYQLLDEMI  176 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~  176 (350)
                      .++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+.. +...+. .-..++   ...+..+...+.+..+.
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999875 346678889999999999999999999999988644 333332 111221   23333333344555555


Q ss_pred             HcCC---CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782          177 ERGA---NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT---YNMVLKLLVRVGRFDRATEVWESMEKRGF  250 (350)
Q Consensus       177 ~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  250 (350)
                      +...   +.+...+..+...+...|+.++|.+.+++..+..  |+...   .....-.....++.+.+.+.++...+.  
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--  328 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--  328 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence            4422   1377888889999999999999999999998864  33331   111112223457788888888888765  


Q ss_pred             CCCHH--HH-HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          251 YPSVS--TY-SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       251 ~p~~~--~~-~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .|+..  .+ .++-..+... |++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45554  33 3555555544 99999999999655555568898899999999999999999999998643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=6.2e-14  Score=129.14  Aligned_cols=303  Identities=13%  Similarity=0.049  Sum_probs=223.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCC---HHHHHHH----------------
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGE---LSEARKL----------------   66 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------   66 (350)
                      +......+.-...+.|+.++|.++|+....   ....+......++..|.+.+.   ..++..+                
T Consensus       375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  454 (987)
T PRK09782        375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL  454 (987)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence            334444444556788999999999998754   122355566677888877765   3333333                


Q ss_pred             ------HHHHHhc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782           67 ------FDEMLER-K-CPV--DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV  136 (350)
Q Consensus        67 ------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  136 (350)
                            ++..... + .++  +...|..+..++.. ++.++|+..+.+....  .|+......+...+...|++++|...
T Consensus       455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~  531 (987)
T PRK09782        455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA  531 (987)
T ss_pred             hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence                  1111111 1 234  67788888888877 7888999988888775  35554444445555789999999999


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC
Q 018782          137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM  216 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  216 (350)
                      |+++...  +|+...+..+..++.+.|++++|...++...+.... ....+..+.......|++++|...+++..+..  
T Consensus       532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--  606 (987)
T PRK09782        532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--  606 (987)
T ss_pred             HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence            9998664  355556667778889999999999999999887522 33333334444456699999999999998854  


Q ss_pred             CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 018782          217 PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVST-YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEM  295 (350)
Q Consensus       217 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  295 (350)
                      |+...+..+..++.+.|++++|...+++....  .|+... +..+-..+... |++++|+..+++..+.. |.++..+..
T Consensus       607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l~~AL~l~-P~~~~a~~n  682 (987)
T PRK09782        607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDS-GDIAQSREMLERAHKGL-PDDPALIRQ  682 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            56888999999999999999999999999986  455444 44444455544 99999999999999886 778899999


Q ss_pred             HHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          296 LRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       296 l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      +..++...|++++|...+++..+..+..
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999998776654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=1.1e-13  Score=125.06  Aligned_cols=303  Identities=12%  Similarity=0.037  Sum_probs=174.4

Q ss_pred             HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782           19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA   98 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   98 (350)
                      .+...|++++|.++|+++....|.++..+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence            4555566666666666665555555555555566666666666666666666554  23333333333333334444446


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH----------------------------------------
Q 018782           99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLD----------------------------------------  138 (350)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------  138 (350)
                      ++.++++.+.. +.+...+..+..+..+.|-...|.++.+                                        
T Consensus       189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            66666666542 2234444455555544443222222211                                        


Q ss_pred             --------HHhh-CCCCccH-H----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782          139 --------SMKR-YNLVPNV-F----TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       139 --------~~~~-~~~~~~~-~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  204 (350)
                              .+.. .+-.|.. .    ...-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~  347 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA  347 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence                    1111 0000111 1    111223455566777777777777776665545556677777888888888888


Q ss_pred             HHHHHHHhCCC-----CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC-------------CCCCHHHHHHH-HHHHh
Q 018782          205 RLITRMTKENV-----MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-------------FYPSVSTYSVM-VHGLC  265 (350)
Q Consensus       205 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~p~~~~~~~l-l~~~~  265 (350)
                      .+++.+.....     .++......|..++...+++++|..+++.+.+..             ..||-..+..+ +..+.
T Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~  427 (822)
T PRK14574        348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV  427 (822)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence            88888765431     1233334667778888888888888888887631             12233333333 33333


Q ss_pred             hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      .. |+..+|.+.++++.... |-|......+...+...|.+.+|+..++.....+|.....
T Consensus       428 ~~-gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~  486 (822)
T PRK14574        428 AL-NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL  486 (822)
T ss_pred             Hc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence            33 88888888888887665 6778888888888888888888888887776665555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=2.5e-17  Score=133.31  Aligned_cols=257  Identities=17%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782           51 VRGLGDVGELSEARKLFDEMLERK-CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND  129 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (350)
                      ...+.+.|++++|++++++..... .+.+...|..+...+...++++.|+..++++...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            444444444444444443322221 1223333333333444444444444444444443211 23333333333 34444


Q ss_pred             HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccCHHHHHHHHH
Q 018782          130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-ANPDEWSYNAILAYHCDRAEVNMALRLIT  208 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  208 (350)
                      +++|.++++...+..  ++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            444444444433221  233334444444444444444444444443221 12233344444444444444455555444


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782          209 RMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP  288 (350)
Q Consensus       209 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (350)
                      +..+..+ .|......++..+...|+.+++..++....+.. ..|...+..+..++... |+.++|+.+|++..... |.
T Consensus       171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc-ccccccccccccccccc-cc
Confidence            4444321 123344444444444444444444444444321 11222233333333322 45555555555544433 33


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782          289 YSSTVEMLRNRLVGLGFLDIIEILADK  315 (350)
Q Consensus       289 ~~~~~~~l~~~~~~~g~~~~a~~~~~~  315 (350)
                      |+.+...+..++...|+.++|.++.++
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             -HHHHHHHHHHHT--------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            444444555555555555555444444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=1.2e-17  Score=135.19  Aligned_cols=266  Identities=15%  Similarity=0.175  Sum_probs=110.5

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhh-hc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      |+...+ .+...+.+.|++++|+++++... .. .+.++..|..+.......++++.|.+.++++...+.. ++..+..+
T Consensus         7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l   84 (280)
T PF13429_consen    7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERL   84 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            443333 55788889999999999996654 43 3556667777777888899999999999999987544 66777778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCC
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~  164 (350)
                      +.. ...+++++|.+++....+.  .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+
T Consensus        85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~  161 (280)
T PF13429_consen   85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD  161 (280)
T ss_dssp             ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred             ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            877 7999999999999887664  3566778888899999999999999999976532 34677888899999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      .++|.+.+++..+..+. +......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...|++
T Consensus       162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence            99999999999998544 67788889999999999999999998887764 45667788999999999999999999999


Q ss_pred             HHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782          245 MEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVD  283 (350)
Q Consensus       245 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  283 (350)
                      ..+.  .| |......+..++... |+.++|..+.+++..
T Consensus       240 ~~~~--~p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  240 ALKL--NPDDPLWLLAYADALEQA-GRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHH--STT-HHHHHHHHHHHT------------------
T ss_pred             cccc--cccccccccccccccccc-ccccccccccccccc
Confidence            9875  34 556666666666544 999999999887653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=2.4e-13  Score=122.86  Aligned_cols=311  Identities=10%  Similarity=0.079  Sum_probs=232.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ++..+..++..+...++.++|++.++.+....+. ...+..++..+...++..+|++.++++.+.. |-+...+..+..+
T Consensus       135 n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~  212 (822)
T PRK14574        135 NPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEI  212 (822)
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4566677788899999999999999999876444 4445555556655677777999999999985 3377888888888


Q ss_pred             HHhcCCHHHHHHHHH------------------------------------------------HHHhC-CCCCCH-h---
Q 018782           89 MCKAGNIDEAHGMLR------------------------------------------------EMRSI-GAEPDA-F---  115 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~------------------------------------------------~~~~~-~~~~~~-~---  115 (350)
                      ..+.|-...|.++..                                                .+... +..|.. .   
T Consensus       213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~  292 (822)
T PRK14574        213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ  292 (822)
T ss_pred             HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence            877665444444333                                                22221 111221 1   


Q ss_pred             -hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHH
Q 018782          116 -SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-----ANPDEWSYNA  189 (350)
Q Consensus       116 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~  189 (350)
                       ...-.+-++...++..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+....     ..++......
T Consensus       293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (822)
T PRK14574        293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD  372 (822)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence             1123345667789999999999999988876677788999999999999999999999987643     1224444678


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhCCC-----------CCCh---hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          190 ILAYHCDRAEVNMALRLITRMTKENV-----------MPDR---HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       190 ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                      |.-++...+++++|..+++.+.+..+           .|+.   ..+..++..+...|++.+|++.++++.... +-|..
T Consensus       373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~  451 (822)
T PRK14574        373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQN  451 (822)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence            89999999999999999999987422           1221   234556778889999999999999998752 23555


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      ....+...+..+ |.+.+|...++...... |-+..+....+.++...|++++|..+.+.+....|...
T Consensus       452 l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        452 LRIALASIYLAR-DLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            666666665555 99999999998877775 66788889999999999999999999988877665554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=5.8e-15  Score=124.02  Aligned_cols=291  Identities=13%  Similarity=0.102  Sum_probs=229.2

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVDILAHNSLLEAMCKAGNIDEAHGM  101 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  101 (350)
                      -+..+|...|+.+......+..+...+.++|-..+++++|+++|+.+.+...  --+...|.+.+--+-+    +-++..
T Consensus       333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            3678899999997777777789999999999999999999999999987631  1256677666533221    223333


Q ss_pred             HH-HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          102 LR-EMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      +. .+.+. -+-.+.+|.++..+|.-.++.+.|++.|++..+.. +...++|+.+..-+.....+|.|...|+..+....
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            33 33333 34567899999999999999999999999999865 33788999999889999999999999999887633


Q ss_pred             CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782          181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM  260 (350)
Q Consensus       181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  260 (350)
                      . +-..|-.+.-.|.+.++++.|+-.|+.+.+-++ .+......+...+.+.|+.++|+++++++......-...-|...
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            3 344555677789999999999999999999764 46677788888999999999999999999876444233333332


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          261 VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                       ..+... +++++|+..++++.+.- |.+..++..+++.|.+.|+.+.|+.-|.-+...+|...+
T Consensus       565 -~il~~~-~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  565 -SILFSL-GRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             -HHHHhh-cchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence             223334 89999999999999874 778889999999999999999999999998887776655

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=6.8e-14  Score=128.88  Aligned_cols=272  Identities=11%  Similarity=0.023  Sum_probs=215.5

Q ss_pred             CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782           40 FTP--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY  117 (350)
Q Consensus        40 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  117 (350)
                      .|+  +...|..+..++.. +++++|...+.+.....  |+......+...+...|++++|...|+++...  +|+...+
T Consensus       471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~  545 (987)
T PRK09782        471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL  545 (987)
T ss_pred             CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence            355  78889999988887 89999999888887663  45444444555667899999999999998664  3445556


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782          118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR  197 (350)
Q Consensus       118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  197 (350)
                      ..+...+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+.  .|+...+..+..++.+.
T Consensus       546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l  622 (987)
T PRK09782        546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence            677888899999999999999998865 334444444445555679999999999999987  45678899999999999


Q ss_pred             cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHH
Q 018782          198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACK  276 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~  276 (350)
                      |++++|+..+++.....+ .+...++.+..++...|++++|...+++..+.  .| +...+..+..++... |++++|..
T Consensus       623 G~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~l-Gd~~eA~~  698 (987)
T PRK09782        623 HNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRL-DDMAATQH  698 (987)
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence            999999999999998753 46677888888999999999999999999886  34 445556666666555 99999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      .+++..+.. |-+..+.....+...+..+++.+.+-+++....++..+
T Consensus       699 ~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        699 YARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            999999876 55567777888888888889999998888877665554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=9e-14  Score=111.23  Aligned_cols=324  Identities=18%  Similarity=0.230  Sum_probs=244.4

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHh--ccCCHHHH-HHHHHHHHhc------------
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLG--DVGELSEA-RKLFDEMLER------------   73 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~------------   73 (350)
                      +++-+.|+.. ..+|.+..+--+|+.|.. +++.+...-..|++.-+  ...++--+ ++.|-.|.+.            
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            4455666654 457889999999999977 77777777666665433  22222211 2223233222            


Q ss_pred             -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 018782           74 -------KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV  146 (350)
Q Consensus        74 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  146 (350)
                             -.+-+..++..+|.+.++--..+.|.++|++......+.+..+||.+|.+-.-..+    .+++.+|....+.
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT  270 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence                   13346789999999999999999999999999988788999999999987554333    7889999999999


Q ss_pred             ccHHHHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH-HHHHHHHHHh----CCCCC
Q 018782          147 PNVFTYNCIIRKLCKNEKVEE----AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM-ALRLITRMTK----ENVMP  217 (350)
Q Consensus       147 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~  217 (350)
                      ||..|+|+++++..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.++..    +.++|
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp  350 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP  350 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence            999999999999999998765    56788899999999999999999999998888754 4444444433    22222


Q ss_pred             ----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCH---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 018782          218 ----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYPSV---STYSVMVHGLCKKKGKLEEACKYFEMMVDEGI  286 (350)
Q Consensus       218 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~  286 (350)
                          +...|...+..|.+..+.+.|.++-.-+...    -+.|+.   .-|..+....|.. ...+.....++.|.-.-+
T Consensus       351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~-es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM-ESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccee
Confidence                3455677888899999999999987766532    122332   2345555566655 789999999999998777


Q ss_pred             CCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcccccccc
Q 018782          287 PPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRK  339 (350)
Q Consensus       287 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  339 (350)
                      -|++.+...++++..-.|.++-.-++|..+...+......+...+.......+
T Consensus       430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k  482 (625)
T KOG4422|consen  430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK  482 (625)
T ss_pred             cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999887777777777666666665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2e-13  Score=105.25  Aligned_cols=299  Identities=13%  Similarity=0.106  Sum_probs=228.2

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAM   89 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~   89 (350)
                      |..-++.+ -..+.++|.+.|-.+.+..+.+..+..+|.+.|.+.|..+.|+++-+.+.++.--+.   ..+...|..-|
T Consensus        39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            43334433 356889999999999988888889999999999999999999999999987621111   23445577788


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHccCCH
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~  165 (350)
                      ...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-.+.    ...|--+...+....++
T Consensus       118 m~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            99999999999999998865 33456788899999999999999999999988764433    23455566677778899


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                      +.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+
T Consensus       197 d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~  275 (389)
T COG2956         197 DRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999987544 455555677888899999999999999999876666778899999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHhhcc
Q 018782          246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG---LGFLDIIEILADKMERS  319 (350)
Q Consensus       246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~  319 (350)
                      .+....++..  ..+-...... .-.+.|..++.+-+..  .|+...+..++.....   .|...+....++.|...
T Consensus       276 ~~~~~g~~~~--l~l~~lie~~-~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         276 METNTGADAE--LMLADLIELQ-EGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHccCCccHH--HHHHHHHHHh-hChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            8864434333  3333322233 4566677766666555  4899988888887654   34566677777777543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=3.2e-13  Score=114.41  Aligned_cols=258  Identities=16%  Similarity=0.096  Sum_probs=203.6

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVK-TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ..+..+.|+++.|.+.+.++.+..|.+.. ........+...|+++.|.+.++++.+..+. ++..+..+...|.+.|++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhH
Confidence            34557899999999999999764333322 2224477889999999999999999988644 788999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                      ++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A  282 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA  282 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999987654322       13334444444556677778888877554 255788888999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ..++++..+.  .|+....  ++.+....++.+++.+..+...+..+ -|...+..+...|.+.+++++|.+.|+.+.+.
T Consensus       283 ~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        283 QQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999885  4454322  33444566999999999999888653 46677889999999999999999999999985


Q ss_pred             CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                        .|+...+..+...+... |+.++|..++++....
T Consensus       358 --~P~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        358 --RPDAYDYAWLADALDRL-HKPEEAAAMRRDGLML  390 (398)
T ss_pred             --CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence              79999988888887665 9999999999987543

>TIGR00540 hemY_coli hemY protein

Probab=99.69  E-value=2e-13  Score=116.31  Aligned_cols=283  Identities=12%  Similarity=0.032  Sum_probs=199.9

Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 018782           55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF  134 (350)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  134 (350)
                      ...|+++.|.+.+.+..+.... ....+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            4679999999999988776322 234445557788899999999999999987532222233444578888999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---hcccCHHHHHHHHHHH
Q 018782          135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYN-AILAYH---CDRAEVNMALRLITRM  210 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~  210 (350)
                      ..++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+.+.+.+..+
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999998876 457788899999999999999999999999988654 333332 112222   2223333334455555


Q ss_pred             HhCCC---CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          211 TKENV---MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY--SVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       211 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      ....+   +.+...+..+...+...|+.++|.+++++..+.  .||....  ..+........++.+.+.+.++...+..
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            54322   137788889999999999999999999999986  4454421  1222111123378899999999888775


Q ss_pred             CCCCH--HHHHHHHHHHHcCCChhHHHHHHHH--hhccCCCcHHHHHHHhcccccccccccchh
Q 018782          286 IPPYS--STVEMLRNRLVGLGFLDIIEILADK--MERSTSCTIQELANAMRGKTGFRKSRSEET  345 (350)
Q Consensus       286 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  345 (350)
                       |-|+  ....++.+.+.+.|++++|.+.|+.  ..+..+.+.  ....+...+...+...++.
T Consensus       330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~  390 (409)
T TIGR00540       330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAA  390 (409)
T ss_pred             -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHH
Confidence             6666  7788999999999999999999995  544444333  3445555555555544443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.68  E-value=1.1e-12  Score=114.10  Aligned_cols=201  Identities=11%  Similarity=0.061  Sum_probs=148.6

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ....-.....+...|++++|.+++.++.+..|.+...|.+|...|-..|+.+++...+-.....+.. |...|..+....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence            3444444455566799999999999999988999999999999999999999999888777666444 779999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH----HHHHHHHHccCCH
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY----NCIIRKLCKNEKV  165 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~  165 (350)
                      .+.|+++.|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+..-+    ...++.+...++.
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999874 455555556677888999999999999998876422222222    2334556666777


Q ss_pred             HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          166 EEAYQLLDEMIER-GANPDEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       166 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      +.|.+.++..... +-..+...++.++..+.....++.+.........
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence            7888777776652 1222445566666666666666666666655544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5.5e-14  Score=118.25  Aligned_cols=266  Identities=15%  Similarity=0.160  Sum_probs=212.8

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCC---CCHHHHHHHHHHHhccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFT---PTVKTYSILVRGLGDVGELSEARKLF-DEMLERKCPVDILAHNSLL   86 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~   86 (350)
                      .+...+..+|...+++++|..+|+.+.+..|   .+.++|.+.+-.+-+    +-++..+ +.+.+. -+-.+.+|.++.
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G  428 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG  428 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence            4556778899999999999999999977433   567888888776643    2233333 333443 344789999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  165 (350)
                      .+|.-+++.+.|++.|++..+.  .| ...+|+.+..-+....++|.|...|+...... +-+-.+|..+.-.|.+.+++
T Consensus       429 NcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~  505 (638)
T KOG1126|consen  429 NCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKL  505 (638)
T ss_pred             chhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchh
Confidence            9999999999999999999985  44 67899999999999999999999999987642 12334555667889999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                      +.|+-.|+++.+.++. +......+...+.+.|+.++|+++++++.....+ |+-.-..-+..+...+++++|+..++++
T Consensus       506 e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeL  583 (638)
T KOG1126|consen  506 EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEEL  583 (638)
T ss_pred             hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence            9999999999988765 6777778888889999999999999999887643 4444445677788899999999999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782          246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP  288 (350)
Q Consensus       246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (350)
                      ++.  .|+..+...++.-.++..|+.+.|+.-|..+.+.+.++
T Consensus       584 k~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  584 KEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            985  78877777776666777799999999999998876333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.2e-13  Score=106.73  Aligned_cols=308  Identities=12%  Similarity=0.064  Sum_probs=224.6

Q ss_pred             HHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCC
Q 018782           18 HALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGN   94 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~   94 (350)
                      .++....+.+++.+-.+.... |++.+...-+....+.....+++.|+.+|+++.+..+-  -|..+|..++-.  +..+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence            556666688888888888766 68888887788888888889999999999999987321  256777776633  3322


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE  174 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  174 (350)
                      ..  +.++.+-...--+--+.|+..+.+.|+-.++.++|..+|+...+.+ +....+|+.+..-|....+...|.+-++.
T Consensus       313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            11  2222221111012334578888888999999999999999998876 44677888888889999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH
Q 018782          175 MIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV  254 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~  254 (350)
                      ..+.++. |-..|-.+.++|.-.+.+.=|+-.|++..... +.|...|..|.++|.+.++.++|.+.|......|-. +.
T Consensus       390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~  466 (559)
T KOG1155|consen  390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG  466 (559)
T ss_pred             HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence            9887655 88889999999999999999999999988864 357888999999999999999999999998876432 55


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMVDE----G-IPP-YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA  328 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  328 (350)
                      ..+..+...+-.. ++..+|...|.+.++.    | +.| .......|..-+.+.+++++|..........  .+.-.-.
T Consensus       467 ~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea  543 (559)
T KOG1155|consen  467 SALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA  543 (559)
T ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence            7777787776655 8888998888876542    3 222 2334445677788889999988877776654  2333334


Q ss_pred             HHhccccc
Q 018782          329 NAMRGKTG  336 (350)
Q Consensus       329 ~~l~~~~~  336 (350)
                      +.|++...
T Consensus       544 k~LlReir  551 (559)
T KOG1155|consen  544 KALLREIR  551 (559)
T ss_pred             HHHHHHHH
Confidence            44444433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=7.1e-12  Score=99.64  Aligned_cols=284  Identities=12%  Similarity=0.078  Sum_probs=216.9

Q ss_pred             cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML  102 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  102 (350)
                      .|+|..|.++..+..+..+.....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....|+...|..-+
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            68999999998887665555666777778888889999999999999888755567777777888888999999999999


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782          103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-------FTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      .++.+.+ +.++........+|.+.|++.....+...+.+.|.-.+.       .+|..+++-....+..+.-...++..
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            9998875 346677888889999999999999999999888765443       45666666666666666666667666


Q ss_pred             HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCH
Q 018782          176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSV  254 (350)
Q Consensus       176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~  254 (350)
                      ... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+   .. ..-.+.+.++...-.+..+.-.+. +.  ++
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p  328 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE--DP  328 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence            544 334667777788888899999999999999888776554   22 222455667777777777665543 23  33


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      ..+.++-..|.+. +.+.+|...|+...+.  .|+..+|..+..++.+.|+..+|.+..++..
T Consensus       329 ~L~~tLG~L~~k~-~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         329 LLLSTLGRLALKN-KLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hHHHHHHHHHHHh-hHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4555555555544 8999999999977776  4899999999999999999999999888765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=4.9e-12  Score=110.18  Aligned_cols=309  Identities=14%  Similarity=0.144  Sum_probs=244.1

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      +..+..|.+|...|-++|+.+++...+-.+.+..|.+...|..+.....+.|+++.|.-.|.+.++..+ ++...+-.-+
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers  248 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERS  248 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHH
Confidence            456778999999999999999999999998888888999999999999999999999999999999854 4666666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHhh-CCCCccHHHHHHHHHHHHc
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAF----SYSIFIHAFCEANDIHSVFRVLDSMKR-YNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~  161 (350)
                      ..|-+.|+...|...|.++.....+.|..    .-...++.+...++.+.|.+.++.... .+-..+...++.++..+.+
T Consensus       249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~  328 (895)
T KOG2076|consen  249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK  328 (895)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            88999999999999999999874333322    223346667778888999999888765 2224566778889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          162 NEKVEEAYQLLDEMIERGANP---------------------------DEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      ...++.|.............+                           +...+ .++-++.+.+..+....+.......+
T Consensus       329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n  407 (895)
T KOG2076|consen  329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDN  407 (895)
T ss_pred             hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhc
Confidence            999999998887776622222                           22221 22333445555555556666666665


Q ss_pred             --CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH
Q 018782          215 --VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSST  292 (350)
Q Consensus       215 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  292 (350)
                        +.-+...|.-+..++...|++.+|..++..+......-+...|..+..+|-.. |.+++|.+.+...+... |.+...
T Consensus       408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~-p~~~D~  485 (895)
T KOG2076|consen  408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILA-PDNLDA  485 (895)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcC-CCchhh
Confidence              33456678899999999999999999999999875555677888888877655 99999999999999886 778888


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          293 VEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       293 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      -..|...+.+.|+.++|.+.++.+.-.
T Consensus       486 Ri~Lasl~~~~g~~EkalEtL~~~~~~  512 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKALETLEQIINP  512 (895)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence            999999999999999999999997643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.4e-12  Score=100.72  Aligned_cols=270  Identities=14%  Similarity=0.139  Sum_probs=210.3

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhc--CC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHE--FT--PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS   84 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   84 (350)
                      +.++.-+|.+.|.+.|..+.|+.+.+.+...  .+  ........|..-|...|-++.|+.+|..+.+.+. .-..+...
T Consensus        68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Alqq  146 (389)
T COG2956          68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQ  146 (389)
T ss_pred             hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHH
Confidence            3344457788999999999999999998652  11  2235567788889999999999999999988643 25677888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC  160 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (350)
                      |+..|-...+|++|+++-+++.+.+..+..    ..|.-+...+....+.+.|..++++..+.+ +..+.+--.+.+...
T Consensus       147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~  225 (389)
T COG2956         147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVEL  225 (389)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHH
Confidence            999999999999999999999987654432    345566666677889999999999998765 345555566778899


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782          161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE  240 (350)
Q Consensus       161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  240 (350)
                      ..|+++.|.+.++.+.+.++..-+.+...|..+|...|+.++....+..+.+..  +....-..+.+........+.|..
T Consensus       226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~  303 (389)
T COG2956         226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQA  303 (389)
T ss_pred             hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHH
Confidence            999999999999999998766667788899999999999999999999998864  344455556665566666777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHhC
Q 018782          241 VWESMEKRGFYPSVSTYSVMVHGLCKK--KGKLEEACKYFEMMVDE  284 (350)
Q Consensus       241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~  284 (350)
                      .+.+-...  +|+...+..+|..-...  .|...+-+..++.|...
T Consensus       304 ~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         304 YLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            76665554  79999999999765443  24466677777777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=8.1e-13  Score=106.79  Aligned_cols=279  Identities=13%  Similarity=0.101  Sum_probs=213.6

Q ss_pred             HHHccCChHHHHHHHHHhhhc-CCC-CHHHHH-HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           19 ALCKRKHVKVAHQFFDNAKHE-FTP-TVKTYS-ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      .+.++|+++.|++++.-+.+. ... +...-| .+++.+..-.++..|.+.-+...... .-++.....-.......|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            467889999999999887652 222 222222 22333333457888888887776542 12344433334445568999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ++|.+.|++.+...-.-.. ....+.-.+-..|++++|+..|-++... +..+..+...+...|-...++..|++++.+.
T Consensus       507 dka~~~ykeal~ndasc~e-alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTE-ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            9999999999876432222 3333455677889999999999887543 2357788888899999999999999999887


Q ss_pred             HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                      ... ++.|+...+.|...|-+.|+..+|.+.+-.--.. ++-+..+...|...|....-++++..+|++..-  +.|+..
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~  660 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS  660 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence            765 4457888999999999999999999887665443 456888999999999999999999999999865  589999


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782          256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF  305 (350)
Q Consensus       256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  305 (350)
                      -|..++..+.++.|++++|+++++...+. +|.+...+..|++.+...|-
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            99999999999999999999999998776 68899999999999988875

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=7.4e-12  Score=101.35  Aligned_cols=163  Identities=10%  Similarity=0.058  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL  159 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (350)
                      .|...+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|+.-++...+-+ +.|-..|-.+.++|
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY  408 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence            444444555555555555555555555543 1233445555555555555555555555555543 33445555555555


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782          160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  239 (350)
                      .-.+.+.-|+-.|++.....+. |...|.+|...|.+.++.++|++.|......|- .+...+..|.+.|-+.++..+|.
T Consensus       409 eim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             HHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHH
Confidence            5555555555555555544222 455555555555555555555555555554432 23344555555555555555555


Q ss_pred             HHHHHHH
Q 018782          240 EVWESME  246 (350)
Q Consensus       240 ~~~~~~~  246 (350)
                      ..|...+
T Consensus       487 ~~yek~v  493 (559)
T KOG1155|consen  487 QYYEKYV  493 (559)
T ss_pred             HHHHHHH
Confidence            5555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.61  E-value=4.8e-12  Score=111.91  Aligned_cols=268  Identities=12%  Similarity=0.077  Sum_probs=190.6

Q ss_pred             CCCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018782           41 TPTVKTYSILVRGLGD-----VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK---------AGNIDEAHGMLREMR  106 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  106 (350)
                      +.+...|...+++...     .+.+++|...|++..+..+. +...|..+..++..         .+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            4556666666665322     24578999999999987433 56667666665542         244789999999999


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 018782          107 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS  186 (350)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  186 (350)
                      +.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...
T Consensus       332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            874 3467788888888999999999999999998875 446778888899999999999999999999988554 2333


Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH-HHh
Q 018782          187 YNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH-GLC  265 (350)
Q Consensus       187 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~  265 (350)
                      +..++..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++...  .|+.......+. .++
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence            33444556678999999999999877543224555777888899999999999999998764  455554444443 334


Q ss_pred             hccCcHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          266 KKKGKLEEACKYFEMMVDEG-IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       266 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      .. |  +.|...++.+.+.. ..+....+  +...+.-.|+.+.+..+ +++.+.+
T Consensus       487 ~~-g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        487 QN-S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cc-H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            33 4  58888888776532 12222222  34445556787777776 7777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.61  E-value=2.5e-12  Score=101.50  Aligned_cols=204  Identities=14%  Similarity=0.139  Sum_probs=163.4

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            3446778888899999999999999999988764 3367788888889999999999999999988764 3455677788


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  199 (350)
                      ...+...|++++|...+++...... +.....+..+..++...|++++|...+.+..+.... +...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence            8888999999999999999876422 223456777788889999999999999998876433 56678888888889999


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      +++|...+++.... .+.+...+..+...+...|+.++|..+++.+...
T Consensus       185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999998776 3345667777888888899999999988877653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=3.4e-12  Score=112.91  Aligned_cols=251  Identities=9%  Similarity=0.052  Sum_probs=187.1

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD---------VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN   94 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (350)
                      +++++|.+.|++.....|.+...|..+..++..         .+++++|...+++..+.++. +..++..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            457899999999988778788888877766542         34589999999999988544 78889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      +++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..  |+ ...+..++..+...|++++|...++
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            999999999999874 3456678888999999999999999999998865  33 3334444555677899999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCC
Q 018782          174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYP  252 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p  252 (350)
                      ++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...+...|  +.|...++.+.+. .-.|
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            988764332455577778888899999999999998766422 23344455556667767  4777777776642 2233


Q ss_pred             CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      ....+..++.++  . |+.+.+..+ +++.+.+
T Consensus       508 ~~~~~~~~~~~~--~-g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        508 NNPGLLPLVLVA--H-GEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cCchHHHHHHHH--H-hhhHHHHHH-HHhhccc
Confidence            333445555443  4 777777766 8887665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.59  E-value=2.5e-11  Score=104.15  Aligned_cols=295  Identities=15%  Similarity=0.155  Sum_probs=211.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA--   92 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   92 (350)
                      .....+...|++++|++.++.....+.............+.+.|+.++|..+|..++++++. +..-|..+..+..-.  
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence            34466788999999999999988888888899999999999999999999999999998643 555666666665222  


Q ss_pred             ---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           93 ---GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        93 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                         .+.+...++|+++...-  |.......+.-.+.....+ ..+..++..+...|+|+   +|+.+-..|.......-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence               35788888999887653  3333333332223222233 34556667778888653   566666666666555556


Q ss_pred             HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 018782          169 YQLLDEMIER----G----------ANPDE--WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV  232 (350)
Q Consensus       169 ~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  232 (350)
                      ..++......    +          -.|+.  +++..+...|-..|++++|+++++..+++.+ -.+..|..-.+.+-+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHC
Confidence            6666655432    1          12333  3445567778899999999999999999753 2367888899999999


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHcCC
Q 018782          233 GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSST--------VEMLRNRLVGLG  304 (350)
Q Consensus       233 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g  304 (350)
                      |++.+|.+.++...+.... |...-+.... |..++|++++|.+++......+..|....        ....+.+|.+.|
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK-y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLA-DRYINSKCAK-YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             CCHHHHHHHHHHHHhCChh-hHHHHHHHHH-HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999986433 4444444444 44556999999999999987775443222        245578999999


Q ss_pred             ChhHHHHHHHHhhc
Q 018782          305 FLDIIEILADKMER  318 (350)
Q Consensus       305 ~~~~a~~~~~~~~~  318 (350)
                      ++..|++-|..+.+
T Consensus       320 ~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  320 DYGLALKRFHAVLK  333 (517)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999987777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.59  E-value=4.7e-11  Score=95.07  Aligned_cols=267  Identities=17%  Similarity=0.142  Sum_probs=219.2

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      |-.-.++.-+.|+.+.+-.++.++.+ ...++....-+..+.....|+.+.|..-++++.+.+.. .+.......++|.+
T Consensus       121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~  199 (400)
T COG3071         121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR  199 (400)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence            44445677789999999999999876 35667788888899999999999999999999988654 78889999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      .|++..+..++..+.+.|.-.+.       .+|..++.-....+..+.-...|+..... .+.++..-.+++.-+.++|+
T Consensus       200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~  278 (400)
T COG3071         200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD  278 (400)
T ss_pred             hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence            99999999999999999865553       46788888887777888888888888654 34567777788889999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      .++|.++.++..+.+..|+    -...-.+.+.++...-++..+.-.+.. +.++..+..|...|.+.+.|.+|...|+.
T Consensus       279 ~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~lea  353 (400)
T COG3071         279 HDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEA  353 (400)
T ss_pred             hHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999877655    222334567788888888887766553 34557889999999999999999999998


Q ss_pred             HHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC
Q 018782          245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY  289 (350)
Q Consensus       245 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~  289 (350)
                      ..+.  .|+..+|+.+-.++... |+..+|.+..++....-.+|+
T Consensus       354 Al~~--~~s~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         354 ALKL--RPSASDYAELADALDQL-GEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHhc--CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCC
Confidence            8775  89999999999998876 999999999998775443443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.58  E-value=8.2e-12  Score=98.55  Aligned_cols=204  Identities=14%  Similarity=0.127  Sum_probs=155.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            3346777888888889999999999999888753 3456677788888888999999999998887764 4456677788


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR  234 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (350)
                      ...+...|++++|...+++.......+ ....+..+...+...|++++|...+........ .+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence            888889999999999999887653222 345666677788888999999999988887642 345677788888889999


Q ss_pred             HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      +++|...+++..+. ...+...+..+...+... |+.++|..+.+.+...
T Consensus       185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       185 YKDARAYLERYQQT-YNQTAESLWLGIRIARAL-GDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhh
Confidence            99999999988875 233455555555554444 8899998888877653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.57  E-value=1.6e-10  Score=97.77  Aligned_cols=309  Identities=14%  Similarity=0.084  Sum_probs=221.9

Q ss_pred             CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782            5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EF--TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA   81 (350)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   81 (350)
                      |+..+...|-.=...|-..|..-.+..+...... +.  ..--.+|..-...|.+.+.++-|..+|...++- ++-+...
T Consensus       474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~sl  552 (913)
T KOG0495|consen  474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSL  552 (913)
T ss_pred             ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHH
Confidence            4444444444444444444544444444444332 11  122345555556666666677777777776665 3346666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                      |......--..|..+....+|+++... .+-....|-...+.+-..||...|..++....+.. +.+...|-+.+.....
T Consensus       553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~e  630 (913)
T KOG0495|consen  553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFE  630 (913)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhc
Confidence            766666666677778888888887776 33345566666677777889999998888887764 4467788888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      +.+++.|..+|.+....  .|+...|.--+....-.++.++|.+++++.++. ++.-...|-.+.+.+.+.++++.|...
T Consensus       631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            89999999999887764  567777776666666778889999999888875 222345777888888899999999998


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          242 WESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       242 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      |..-.+.  .|+......++.-+-...|.+-.|..++++..-.+ |-+...|...++.-.+.|..+.|..+..+..+.-+
T Consensus       708 Y~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  708 YLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            8877654  67777777777777667689999999999998887 77889999999999999999999998888776533


Q ss_pred             C
Q 018782          322 C  322 (350)
Q Consensus       322 ~  322 (350)
                      .
T Consensus       785 ~  785 (913)
T KOG0495|consen  785 S  785 (913)
T ss_pred             c
Confidence            3

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.56  E-value=5.4e-13  Score=115.74  Aligned_cols=242  Identities=15%  Similarity=0.171  Sum_probs=149.4

Q ss_pred             CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782            1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI   79 (350)
Q Consensus         1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   79 (350)
                      |...|+.|+..||.++|..||..|+++.|- +|.-|.. ..|.+...|+.++......++.+.+.           .|.+
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a   83 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA   83 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence            356799999999999999999999999998 9988865 67788889999999999988877776           5789


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH-HH-------hCCCCCCHhhHHHH--------------HHHHHhcCCHhHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLRE-MR-------SIGAEPDAFSYSIF--------------IHAFCEANDIHSVFRVL  137 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~-~~-------~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~  137 (350)
                      .+|..|..+|...|+... ++..++ +.       ..|+......+-..              +....-.|-++.+++++
T Consensus        84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll  162 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL  162 (1088)
T ss_pred             hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999755 222222 21       12221111111111              11112223333333333


Q ss_pred             HHHhhCCC-CccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 018782          138 DSMKRYNL-VPNVFTYNCIIRKLCKN-EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV  215 (350)
Q Consensus       138 ~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  215 (350)
                      ..+..... .|...    .++-+... ..+++...+.....+   .|++.+|..++......|+.+.|..++..|.+.|+
T Consensus       163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            33321110 01111    12222222 222333333333322   46777777777777777777777777777777777


Q ss_pred             CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782          216 MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC  265 (350)
Q Consensus       216 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  265 (350)
                      +.+..-|..|+-+   .++...+..+++.|.+.|+.|+..|+...+....
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l  282 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL  282 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence            6665555555443   6667777777777777777777777776665544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.55  E-value=7.6e-11  Score=103.74  Aligned_cols=302  Identities=13%  Similarity=0.114  Sum_probs=149.3

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEF---TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      |...+.|...+.-.|++..+..+...+....   +.-...|..+.++|...|+++.|...|.+..+....-..-.+.-+.
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg  349 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG  349 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence            3344444445555555555555555443311   1222335555555555555555555554444432111122233344


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN----DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN  162 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  162 (350)
                      +.+.+.|+.+.+...|+.+.+. .+.+..+...|...|...+    ..+.|..++.+..+.- +.|...|-.+...+...
T Consensus       350 Qm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  350 QMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence            5555555555555555555543 1223334444444444432    2344444444444332 33444554444444433


Q ss_pred             CCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC---CCCCCh------hHHHHHHHHH
Q 018782          163 EKVEEAYQLLDEMI----ERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE---NVMPDR------HTYNMVLKLL  229 (350)
Q Consensus       163 g~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~  229 (350)
                      .- ..++..|..+.    ..+..+.+...|.+.......|+++.|...|......   ...++.      .+-..+..+.
T Consensus       428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence            22 22244443332    2333455566666666666666666666666665443   111111      1222345555


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 018782          230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDII  309 (350)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  309 (350)
                      ...++.+.|.+.|..+.+.  .|....-..-+.+..+..++..+|...++.....+ ..++..+..+...+.+...+..|
T Consensus       507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence            5566666777777666654  45444333333334444466777777777766654 55666666677677777777777


Q ss_pred             HHHHHHhh
Q 018782          310 EILADKME  317 (350)
Q Consensus       310 ~~~~~~~~  317 (350)
                      .+-|+.+.
T Consensus       584 ~k~f~~i~  591 (1018)
T KOG2002|consen  584 KKKFETIL  591 (1018)
T ss_pred             ccHHHHHH
Confidence            66444443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.54  E-value=1.5e-10  Score=97.95  Aligned_cols=301  Identities=11%  Similarity=0.058  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      .|.....+--..|..+....+|+++....|.....|......+-..|++..|..++....+.... +...|...+..-..
T Consensus       552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e  630 (913)
T KOG0495|consen  552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE  630 (913)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence            34444444344455555555555554444444444544444444455555555555555544222 44555555555555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      +.+++.|..+|.+....  .|+...|..-+..-.-.++.++|.+++++..+.- +--...|-.+.+.+-+.++.+.|.+.
T Consensus       631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            55555555555555442  3444444444444444455555555555544431 11122334444444455555555544


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--
Q 018782          172 LDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG--  249 (350)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--  249 (350)
                      |..-.+. ++.....|..+...--+.|++-.|..++++..-.++ -+...|...|+.-.+.|+.+.|..+..+..+.-  
T Consensus       708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            4443332 111233344444443444445555555555444432 234444445555555555555544444433320  


Q ss_pred             ---------------------------CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782          250 ---------------------------FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       250 ---------------------------~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                                                 ..-|....-.+...|... .+++.|.+.|.+....+ +.+..+|..+...+.+
T Consensus       786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e-~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~  863 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE-KKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR  863 (913)
T ss_pred             cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence                                       012333333344444434 67777777777777776 5667777777777777


Q ss_pred             CCChhHHHHHHHHhhccC
Q 018782          303 LGFLDIIEILADKMERST  320 (350)
Q Consensus       303 ~g~~~~a~~~~~~~~~~~  320 (350)
                      .|.-+.-.+++.+.....
T Consensus       864 hG~eed~kev~~~c~~~E  881 (913)
T KOG0495|consen  864 HGTEEDQKEVLKKCETAE  881 (913)
T ss_pred             hCCHHHHHHHHHHHhccC
Confidence            776666666666655443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=3.6e-12  Score=98.76  Aligned_cols=235  Identities=11%  Similarity=0.042  Sum_probs=191.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                      -+.+..+|.+.|.+.+|.+.++..++.  .|-+.||..|-+.|.+..+...|+.++.+-.+. .+.++.....+.+.+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            366889999999999999999998875  567778999999999999999999999988775 24455455567788888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      .++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ -++..|+.+.-+|...++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999998887433 667777777888889999999999999999997 4788999999999999999999999


Q ss_pred             HHHHHhcCCCCCH--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          242 WESMEKRGFYPSV--STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       242 ~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      |++....--.|+.  ..|..+-.... .-|++..|.+.|+-....+ +.+...++.|.-.-.+.|+.+.|..+++.....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            9988754333432  23444433333 3499999999999998887 678889999999999999999999999988876


Q ss_pred             CCCc
Q 018782          320 TSCT  323 (350)
Q Consensus       320 ~~~~  323 (350)
                      .|..
T Consensus       459 ~P~m  462 (478)
T KOG1129|consen  459 MPDM  462 (478)
T ss_pred             Cccc
Confidence            5543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.53  E-value=5e-11  Score=104.85  Aligned_cols=316  Identities=13%  Similarity=0.100  Sum_probs=204.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhh-----hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCC----
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAK-----HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER---KCP----   76 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~----   76 (350)
                      |...|-.+...+-.. +...++..|..+.     ++.++.+...|.+...+...|+++.|...|......   ...    
T Consensus       413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~  491 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG  491 (1018)
T ss_pred             cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence            333444444444333 3333355555542     133455666677777777777777777777666543   111    


Q ss_pred             --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHH
Q 018782           77 --VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA-FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYN  153 (350)
Q Consensus        77 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  153 (350)
                        ++..+-..+..+.-..++.+.|.+.|..+.+..  |+- ..|.-++......++..+|...++...... ..++..++
T Consensus       492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars  568 (1018)
T KOG2002|consen  492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS  568 (1018)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence              122223335555556666777777777776642  322 223333323333456677777777765543 34555666


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------ccCHHHHHHHHHHHHhCCCCCChh
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIER-GANPDEWSYNAILAYHCD------------RAEVNMALRLITRMTKENVMPDRH  220 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~  220 (350)
                      .+...+.+...+..|..-|+.+.+. ...+|..+...|.+.|.+            .+..++|+++|.++++..+ .|.+
T Consensus       569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~y  647 (1018)
T KOG2002|consen  569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMY  647 (1018)
T ss_pred             HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence            6666777777777777766665543 223466666666665542            2346788999998888754 4777


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRNR  299 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~  299 (350)
                      .-|-+.-+++..|++..|..+|.+..+... -...+|-.+.++|... |++..|+++|+...+. .-..+..+...|.++
T Consensus       648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~-~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara  725 (1018)
T KOG2002|consen  648 AANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ-GQYRLAIQMYENCLKKFYKKNRSEVLHYLARA  725 (1018)
T ss_pred             hccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            778888899999999999999999997643 1334566677777766 9999999999986644 445678899999999


Q ss_pred             HHcCCChhHHHHHHHHhhccCCCcHHHHHHHh
Q 018782          300 LVGLGFLDIIEILADKMERSTSCTIQELANAM  331 (350)
Q Consensus       300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  331 (350)
                      +.+.|.+.+|.+.+.......|..+.-..|..
T Consensus       726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            99999999999999998888777776655553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=4.6e-12  Score=98.16  Aligned_cols=232  Identities=11%  Similarity=0.041  Sum_probs=193.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE  126 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (350)
                      -+.+.++|.+.|.+.+|.+.|+..++.  .|-+.+|..|-.+|.+..++..|+.++.+-.+. .+-++....-+...+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            377899999999999999999998876  467788999999999999999999999999886 44455555667788889


Q ss_pred             cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHH
Q 018782          127 ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRL  206 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  206 (350)
                      .++.+++.++|+...+.. +.++.....+...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            999999999999998865 557777777888888999999999999999999987 888999999999999999999999


Q ss_pred             HHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          207 ITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       207 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      |++....-..|+  ..+|..+.......|++..|.+.|+-....+.. +...++.+.-. ..+.|++++|..+++...+.
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL-~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVL-AARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHH-HhhcCchHHHHHHHHHhhhh
Confidence            999877543343  456888888899999999999999998876332 45666665543 34459999999999988765


Q ss_pred             C
Q 018782          285 G  285 (350)
Q Consensus       285 ~  285 (350)
                      .
T Consensus       459 ~  459 (478)
T KOG1129|consen  459 M  459 (478)
T ss_pred             C
Confidence            3

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.3e-10  Score=96.61  Aligned_cols=287  Identities=11%  Similarity=0.068  Sum_probs=180.7

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      .-++.....-.+-|...+++.+..++++.+....|++...+..-|.++...|+..+-.-+=.++.+. .|..+.+|.++.
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg  319 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG  319 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence            3444555555566667777777777777777766777777777777777777777666666666665 344667777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE  166 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  166 (350)
                      --|...|+..+|.+.|.+....... =...|-.+...|+-.+..++|+..+....+.- +....-+--+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence            7777777777777777776653211 12356677777777777777777776664421 111111122233456677777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----C--CCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782          167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE----N--VMPDRHTYNMVLKLLVRVGRFDRATE  240 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~  240 (350)
                      .|...|.+.....+. |+...+-+.-.....+.+.+|..+|+..+..    +  ...-..+++.|.++|.+.+.+++|..
T Consensus       398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            777777777665433 5666666666666677777777777766521    0  00123456777777777777777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782          241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV  301 (350)
Q Consensus       241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  301 (350)
                      .+++..... ..+..++.++.-.+... |+++.|.+.|.+....  .|+..+...++..+.
T Consensus       477 ~~q~aL~l~-~k~~~~~asig~iy~ll-gnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  477 YYQKALLLS-PKDASTHASIGYIYHLL-GNLDKAIDHFHKALAL--KPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHcC-CCchhHHHHHHHHHHHh-cChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence            777776542 23555565555555544 7777787777776654  455555555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.6e-10  Score=94.47  Aligned_cols=196  Identities=13%  Similarity=0.158  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD  196 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  196 (350)
                      |-.+...|....+.++..+.|....+.+ +.+..+|..-...+.-.+++++|..=|++.....+. +...|.-+..+..+
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR  440 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence            3444445555556666666666665544 334555555555555666677777777766665332 34445555555557


Q ss_pred             ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-----CC--HHHHHHHHHHHhhccC
Q 018782          197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-----PS--VSTYSVMVHGLCKKKG  269 (350)
Q Consensus       197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~--~~~~~~ll~~~~~~~~  269 (350)
                      .+.++++...|++..+. ++.-+..|+.....+...+++++|.+.|+..++....     .+  ......++.  .+-.+
T Consensus       441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~--~qwk~  517 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV--LQWKE  517 (606)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh--hchhh
Confidence            77888888888887775 4455678888888888888899988888888764211     11  112222222  12237


Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      ++..|.+++.+.++.+ |-....+..|...-...|+.++|+++|++...
T Consensus       518 d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  518 DINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888999998888877 55667788888888899999999999987654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=6.6e-10  Score=89.11  Aligned_cols=312  Identities=12%  Similarity=0.032  Sum_probs=224.6

Q ss_pred             CcCHhhHHHHHHHHH--ccCChHHHHHHHHH--hhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018782            7 KPSIYDLDQLLHALC--KRKHVKVAHQFFDN--AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH   82 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   82 (350)
                      +|...+...-+.+++  ..++...|.+.+-.  ....++.|......+..++...|+..+|+..|++....++. +....
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M  269 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM  269 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence            333333333344333  34444444444443  44578899999999999999999999999999998776321 23333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782           83 NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN  162 (350)
Q Consensus        83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  162 (350)
                      ......+.+.|+.+....+...+.... .-+...|..-+.......+++.|+.+-++.++.. +.+...+-.-...+...
T Consensus       270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence            333444667888988888888887542 2344445555555567788999999999988765 34556666666788899


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH-HHcCCHhHHHH
Q 018782          163 EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL-KLL-VRVGRFDRATE  240 (350)
Q Consensus       163 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~  240 (350)
                      |++++|.-.|+......+ -+...|..|+..|...|.+.+|...-....+. .+.+..+.+.+. ..| .....-++|.+
T Consensus       348 ~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk  425 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK  425 (564)
T ss_pred             cchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence            999999999999887643 37889999999999999999998888776554 334555555542 222 23344678999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      +++.....  .|+..---..+.-++...|..+.++.++++....  .||......|.+.+...+.+++|+..|....+.+
T Consensus       426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            99887764  6775544444444555569999999999988764  5899999999999999999999999999999988


Q ss_pred             CCcHHHH
Q 018782          321 SCTIQEL  327 (350)
Q Consensus       321 ~~~~~~~  327 (350)
                      |.+....
T Consensus       502 P~~~~sl  508 (564)
T KOG1174|consen  502 PKSKRTL  508 (564)
T ss_pred             ccchHHH
Confidence            8776554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=4.6e-09  Score=85.88  Aligned_cols=162  Identities=9%  Similarity=0.077  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH----H-H---HhcccCHHHHHHHHHHHHhCCCCCChh
Q 018782          151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEW--SYNAIL----A-Y---HCDRAEVNMALRLITRMTKENVMPDRH  220 (350)
Q Consensus       151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll----~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~  220 (350)
                      +|--.++.....|+.+...++|++.+.. ++|-..  .|.-.|    + +   -....+.+.+.++++..++. ++....
T Consensus       324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF  401 (677)
T KOG1915|consen  324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF  401 (677)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence            3444444445556666666666666554 222110  111111    0 0   01334455555555544442 222222


Q ss_pred             HHHHHH----HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782          221 TYNMVL----KLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML  296 (350)
Q Consensus       221 ~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  296 (350)
                      ||.-+-    ....++.++..|.+++...+.  ..|...+|...|..=... ++++....++++.++.+ |-+..+|...
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL-~efDRcRkLYEkfle~~-Pe~c~~W~ky  477 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL-REFDRCRKLYEKFLEFS-PENCYAWSKY  477 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence            222221    122234455555555544442  345555555555443322 55555555555555554 4455555555


Q ss_pred             HHHHHcCCChhHHHHHHHHhhc
Q 018782          297 RNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       297 ~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      ...-...|+.+.|..+|+-...
T Consensus       478 aElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc
Confidence            5555555555555555554443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.45  E-value=8.3e-10  Score=94.97  Aligned_cols=262  Identities=15%  Similarity=0.194  Sum_probs=188.1

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHh-
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY-SIFIHAFCE-  126 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-  126 (350)
                      -....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+  |+...| ..+..+..- 
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence            3445667889999999999886655 44456677788899999999999999999999975  455544 444444422 


Q ss_pred             ----cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782          127 ----ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV-EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN  201 (350)
Q Consensus       127 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  201 (350)
                          ..+.+....+++++...-  |.......+.-.+..-..+ ..+...+..+..+|+++   +|+.+-..|.......
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA  160 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence                225677888898886653  4444444333333332233 34566677777887653   6666766676666666


Q ss_pred             HHHHHHHHHHhC----C----------CCCCh--hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782          202 MALRLITRMTKE----N----------VMPDR--HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC  265 (350)
Q Consensus       202 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  265 (350)
                      ....++......    +          -.|+.  +++..+...|-..|++++|.+++++.+++  .|+..-+..+-.-..
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil  238 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL  238 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence            666666665432    1          12343  35567788899999999999999999987  677555544444455


Q ss_pred             hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      ++.|++.+|.+.++..+..+ .-|...-+..+..+.+.|+.++|.+++....+.+.
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            67799999999999999988 56777778888999999999999999999887664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.44  E-value=2.1e-10  Score=93.29  Aligned_cols=96  Identities=14%  Similarity=0.043  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC  160 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (350)
                      .|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+.. +.+..++..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444444555555555555555554432 2234445555555555555555555555554432 123344444444444


Q ss_pred             ccCCHHHHHHHHHHHHHc
Q 018782          161 KNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       161 ~~g~~~~a~~~~~~~~~~  178 (350)
                      ..|++++|.+.++...+.
T Consensus       144 ~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=6.4e-10  Score=92.53  Aligned_cols=276  Identities=12%  Similarity=0.035  Sum_probs=218.3

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      ..+.........-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|-.+.+|.++
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            345566666777788889999999999999987 4567777777788999999998888888888876 45677899999


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV  200 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  200 (350)
                      .-.|...|...+|.++|.+..... +.-...|-.....|.-.|..+.|+..+...-+.-..-....+ -+.--|.+.++.
T Consensus       319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-Ylgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-YLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-HHHHHHHHhccH
Confidence            999999999999999999987654 224568888899999999999999999888775222111122 233447788999


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHhhccCcHHHH
Q 018782          201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYP----SVSTYSVMVHGLCKKKGKLEEA  274 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~ll~~~~~~~~~~~~a  274 (350)
                      +.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+.....  .+.+    -..+++.+-.++ ++.+.+++|
T Consensus       397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHHHH
Confidence            99999999988763 357778888888888889999999999887721  1111    233456666665 455999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          275 CKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      +..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.....+..
T Consensus       475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            99999999886 8899999999999999999999999999988754443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=1.6e-10  Score=98.14  Aligned_cols=241  Identities=17%  Similarity=0.149  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----KC-PVDI-LAHNSLLEAMCKAGNIDEAHGMLREMRSI-----  108 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  108 (350)
                      |.-..+...+...|...|+++.|+.+++...+.     |. .|.. ...+.+...|...+++++|..+|+++...     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            333444455555666666666666666554433     10 1122 22233455555666666666666655431     


Q ss_pred             C-CCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCC-CccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 018782          109 G-AEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNL-VPNV-FTYNCIIRKLCKNEKVEEAYQLLDEMIER-  178 (350)
Q Consensus       109 ~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-  178 (350)
                      | ..| -..+++.|...|.+.|++++|...++...+     .|. .|.+ ..++.+...+...+++++|..++....+. 
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            1 111 122455555556666666555555544321     110 1111 22344445555566666666665544321 


Q ss_pred             --CCCC----CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----C--C-CChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          179 --GANP----DEWSYNAILAYHCDRAEVNMALRLITRMTKEN----V--M-PDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       179 --~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                        -+.+    -..+++.+...|...|++++|.++++.++...    -  . -....++.+...|.+.+.+.+|.++|.+.
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence              1111    12445566666666666666666666554320    1  1 11234555566666666666666666554


Q ss_pred             Hh----cCC-CCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 018782          246 EK----RGF-YPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMV  282 (350)
Q Consensus       246 ~~----~~~-~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~  282 (350)
                      ..    .|. .|+ ..+|..|...|-.. |+++.|.++.+.+.
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~-g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQ-GNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHc-ccHHHHHHHHHHHH
Confidence            32    111 112 23455555555444 66666666665554

>PF13041 PPR_2: PPR repeat family

Probab=99.42  E-value=9.5e-13  Score=75.67  Aligned_cols=49  Identities=37%  Similarity=0.823  Sum_probs=34.5

Q ss_pred             CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782          217 PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC  265 (350)
Q Consensus       217 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  265 (350)
                      ||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.+|.+++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5666777777777777777777777777777777777777777776665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.40  E-value=1.2e-09  Score=88.80  Aligned_cols=228  Identities=14%  Similarity=0.083  Sum_probs=160.1

Q ss_pred             cCChHHHHHHHHHhhhcCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFT----PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA   98 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   98 (350)
                      .+..+.++.-+..+....+    .....|..+...+...|+.++|...|++..+..+ .+...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            3455677777777664322    2246688889999999999999999999998754 3789999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782           99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      ...|++..+.. +-+..++..+..++...|++++|.+.|+...+..  |+..........+...+++++|...+.+....
T Consensus       118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            99999999864 2346678888889999999999999999998864  44332223333345678899999999776543


Q ss_pred             CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC---CC---CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          179 GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE---NV---MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      . .|+...+ .+...  ..|+...+ ..+..+.+.   .+   +.....|..+...+.+.|++++|...|++..+.+ .|
T Consensus       195 ~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~  268 (296)
T PRK11189        195 L-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY  268 (296)
T ss_pred             C-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence            2 2333222 22222  34444333 244444321   11   1123578888999999999999999999998763 23


Q ss_pred             CHHHHHHH
Q 018782          253 SVSTYSVM  260 (350)
Q Consensus       253 ~~~~~~~l  260 (350)
                      |...+...
T Consensus       269 ~~~e~~~~  276 (296)
T PRK11189        269 NFVEHRYA  276 (296)
T ss_pred             hHHHHHHH
Confidence            55555443

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=1.3e-12  Score=75.09  Aligned_cols=49  Identities=37%  Similarity=0.861  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           77 VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                      ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=5.6e-10  Score=85.80  Aligned_cols=305  Identities=13%  Similarity=0.100  Sum_probs=221.4

Q ss_pred             CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782            1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL   80 (350)
Q Consensus         1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   80 (350)
                      |.-.|+....--+.+++..+.+..++..|++++..-....|.+......|..+|....++..|-.-++++-..  .|...
T Consensus         1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~   78 (459)
T KOG4340|consen    1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE   78 (459)
T ss_pred             CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence            4455666666678888888899999999999999887777778899999999999999999999999998875  34544


Q ss_pred             HHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH--HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           81 AHNS-LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH--AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        81 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      -|.. -...+.+.+.+..|+.+...|.+.   ++...-..-+.  .....+|+..+..++++....|   +..+.+...-
T Consensus        79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC  152 (459)
T KOG4340|consen   79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC  152 (459)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence            4443 356677889999999999998753   22222111222  2234678888888888876543   4444455555


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh------------------
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR------------------  219 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------  219 (350)
                      ...+.|+++.|.+-|....+-+.--....|+..+.. .+.++.+.|++...++++.|++..+                  
T Consensus       153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN  231 (459)
T KOG4340|consen  153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN  231 (459)
T ss_pred             eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence            567899999999999998876444456678766654 4568999999999998887653211                  


Q ss_pred             ----------hHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782          220 ----------HTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP  288 (350)
Q Consensus       220 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (350)
                                ..+|.-...+.+.|+++.|.+-+..|.-+ ....|+.|.+.+.-  ....+++.+..+-++-+...+ |-
T Consensus       232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~n-Pf  308 (459)
T KOG4340|consen  232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQN-PF  308 (459)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcC-CC
Confidence                      11233333456789999999988888632 23456666665542  234477888888888887776 56


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          289 YSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       289 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      ...||..++-.|++..-++.|..++.+=.
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence            78999999999999999999888776543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=8.8e-10  Score=89.61  Aligned_cols=266  Identities=12%  Similarity=0.024  Sum_probs=185.7

Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           53 GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM--CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      -+.+.|+++.|.+++.-+.+..-......-+.|-..+  ....++..|.++-+...... .-+....+.-.......|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            4567788888888887776653332223333332222  22345677777766665432 23333343344445567999


Q ss_pred             hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      ++|...|++.....-. -......+.-.+-..|++++|++.|-++...- ..+......+...|-...++.+|++++.+.
T Consensus       507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            9999999999876422 22333334456677899999999998876542 226677777888899999999999999887


Q ss_pred             HhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 018782          211 TKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS  290 (350)
Q Consensus       211 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  290 (350)
                      ... ++.|+.....|...|-+.|+-.+|.+.+-+--.. ++-+..+..-+. +|.....-+++++.+|++..-  +.|+.
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~-ayyidtqf~ekai~y~ekaal--iqp~~  659 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA-AYYIDTQFSEKAINYFEKAAL--IQPNQ  659 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH-HHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence            764 5567888999999999999999999887654433 333455555444 455555788999999998754  57999


Q ss_pred             HHHHHHHHHHH-cCCChhHHHHHHHHhhccCCCcHHH
Q 018782          291 STVEMLRNRLV-GLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       291 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      .-|..++..|. +.|++++|.++++.+.+.-|...+-
T Consensus       660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc  696 (840)
T KOG2003|consen  660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC  696 (840)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence            99988877665 5899999999999999886665543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=2.5e-08  Score=81.69  Aligned_cols=303  Identities=13%  Similarity=0.081  Sum_probs=179.1

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      .+.+=.+...+..|..+|++.....|.-...|...+.+--..|++..|.++|++..+-  .|+..+|++.+..=.+.+.+
T Consensus       113 Yae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykei  190 (677)
T KOG1915|consen  113 YAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEI  190 (677)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHH
Confidence            3344445555555666666555544544555555555555566666666666666553  56777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CC-CccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY-NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      +.|..+|++..-  +.|+..+|--....-.+.|+...+..+|+...+. |- ..+...+.+....-.++..++.|..+|.
T Consensus       191 eraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk  268 (677)
T KOG1915|consen  191 ERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK  268 (677)
T ss_pred             HHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777665  3467777777666667777777777777666442 10 0111222222222222333333333333


Q ss_pred             HHHHcC-------------------------------------------CCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          174 EMIERG-------------------------------------------ANPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       174 ~~~~~~-------------------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      -.+..-                                           -+.|-.+|--.+..-...|+.+...++++.+
T Consensus       269 yAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA  348 (677)
T KOG1915|consen  269 YALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA  348 (677)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            222110                                           0124445555566656667788888888877


Q ss_pred             HhCCCCCChh-------HHHH---HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH---HHhhccCcHHHHHHH
Q 018782          211 TKENVMPDRH-------TYNM---VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH---GLCKKKGKLEEACKY  277 (350)
Q Consensus       211 ~~~~~~~~~~-------~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~~a~~~  277 (350)
                      +.. ++|-..       .|.-   .+-.-....+.+.+.++|+...+. ++-...||..+--   .+...+.++..|.++
T Consensus       349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki  426 (677)
T KOG1915|consen  349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI  426 (677)
T ss_pred             Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            765 334221       1111   111123467788888888887763 2223344443322   222244788888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          278 FEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      +...+..  -|...++...+..-.+.++++...+++++....+|.+-..
T Consensus       427 LG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  427 LGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             HHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence            8877654  4888999999999999999999999999998876655443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.38  E-value=2.8e-09  Score=79.01  Aligned_cols=197  Identities=14%  Similarity=0.104  Sum_probs=97.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE  126 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (350)
                      ...|.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            344455555555555555555555554322 44455555555555555555555555555542 2233445555555555


Q ss_pred             cCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782          127 ANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR  205 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  205 (350)
                      .|.+++|...|++...... .--..+|..+.-+..+.|+++.|...|++..+.... ...+...+.......|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence            5555555555555543211 112334555555555555555555555555554332 23334444444555555555555


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          206 LITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      +++.....+. ++..+.-..|+.-...|+-+.+.+.=..+..
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5555444433 4445444455555555555555554444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.37  E-value=1.2e-09  Score=92.93  Aligned_cols=242  Identities=19%  Similarity=0.183  Sum_probs=176.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHhhC----
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----G-AEPDAFS-YSIFIHAFCEANDIHSVFRVLDSMKRY----  143 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~----  143 (350)
                      .|.-..+...+...|...|+++.|+.+++...+.     | ..|...+ .+.+...|...+++++|..+|+++...    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3334556667999999999999999999998764     2 1233333 344778889999999999999988542    


Q ss_pred             -C--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782          144 -N--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER-----GAN-PDE-WSYNAILAYHCDRAEVNMALRLITRMTKE  213 (350)
Q Consensus       144 -~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  213 (350)
                       |  .+.-..+++.|..+|.+.|++++|...++...+.     +.. |.. ..++.+...+...+++++|..+++...+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence             2  1223567788888999999999999888876542     111 222 23666777888999999999999876543


Q ss_pred             ---CCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CC--CCC-HHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782          214 ---NVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKR----GF--YPS-VSTYSVMVHGLCKKKGKLEEACKYFE  279 (350)
Q Consensus       214 ---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~  279 (350)
                         -+.++    ..+++.|...|...|++++|.+++++++..    +-  .+. ...++.+-..|... +++++|.++|.
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~~~a~~l~~  433 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKYEEAEQLFE  433 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cccchHHHHHH
Confidence               12222    357899999999999999999999998743    11  222 34566677776544 88888988887


Q ss_pred             HHHh----CC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          280 MMVD----EG--IPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       280 ~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      +...    .|  .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            7542    23  23345689999999999999999999988775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.37  E-value=2.6e-09  Score=79.20  Aligned_cols=206  Identities=13%  Similarity=0.028  Sum_probs=175.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      ...|.-.|...|+...|..-+++.....|.+..+|..+...|.+.|+.+.|.+.|++..+.... +-.+.|.....+|..
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q  116 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence            4456677899999999999999998888899999999999999999999999999999988544 788899999999999


Q ss_pred             CCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      |++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|...
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence            999999999999987532 2234589999999999999999999999998875 44566788888999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782          172 LDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN  223 (350)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  223 (350)
                      ++.....+. ++..+.-..|..-.+.|+.+.+-+.=..+...  -|...-|.
T Consensus       196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q  244 (250)
T COG3063         196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ  244 (250)
T ss_pred             HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence            999988876 78888888888888999999888877776664  35544443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7.6e-09  Score=83.21  Aligned_cols=281  Identities=11%  Similarity=0.068  Sum_probs=217.0

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      ++-+......+...+...|+.++|...|+......|.+..........+.+.|+.+....+...+.... ......|..-
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~  306 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH  306 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence            455677788899999999999999999999877666677777777777889999999999998887652 2355556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  165 (350)
                      +.......+++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|+..+... +.+...|..|+.+|...|++
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~  384 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF  384 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence            666677889999999999988753 3345566666677888999999999999988764 45789999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cccCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAIL-AYHC-DRAEVNMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVW  242 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~  242 (350)
                      .+|..+-+...+.- ..+..+.+.+. ..|. ...--++|.++++.....  .|+ ....+.+...|...|..+.+..++
T Consensus       385 kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  385 KEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             HHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            99988877766542 22555555442 2222 334457888998887764  344 345677888899999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782          243 ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML  296 (350)
Q Consensus       243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  296 (350)
                      +.....  .||....+.+-..+... +.+++|.+.|....+.+ |.+..+...+
T Consensus       462 e~~L~~--~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~d-P~~~~sl~Gl  511 (564)
T KOG1174|consen  462 EKHLII--FPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQD-PKSKRTLRGL  511 (564)
T ss_pred             HHHHhh--ccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence            998864  78988888888876655 89999999999998887 5565555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.7e-09  Score=88.57  Aligned_cols=222  Identities=15%  Similarity=0.156  Sum_probs=137.8

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .-.|+...|.+-|+......+.+...|-.+..+|+...+.++..+.|++..+.+.. ++.+|..-.+...-.+++++|..
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence            34566677777777766644444445666777777777777777777777766443 56666666666666677777777


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      =|++.+... +-+...|..+.-+..+.+.+++++..|++..+. +|..+.+|+.....+...++++.|.+.|+...+...
T Consensus       416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            777776643 223445555555555666777777777777654 455566777777777777777777777777665422


Q ss_pred             CC-----CH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          181 NP-----DE--WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       181 ~~-----~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      ..     +.  ..-..++ .+.-.+++..|..++....+..++ ....|..|...-.+.|+.++|.++|++...
T Consensus       494 ~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            10     11  1111111 112346677777777777665432 345666677777777777777777776554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.34  E-value=4.7e-08  Score=82.45  Aligned_cols=301  Identities=12%  Similarity=0.048  Sum_probs=187.0

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      .|..+...+...|+.+.+.+.+.......+++.   .........+...|++++|.+.+++..+.. |.+...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence            355555666677888888777777655434332   223333456678899999999999988873 335545442 222


Q ss_pred             HHh----cCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782           89 MCK----AGNIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE  163 (350)
Q Consensus        89 ~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  163 (350)
                      +..    .+....+.+.+...  .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence            222    44555555555541  112233 3344566678889999999999999998875 456778888899999999


Q ss_pred             CHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHH-H--HHHHHHHHcCCHh
Q 018782          164 KVEEAYQLLDEMIERGAN-PDE--WSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTY-N--MVLKLLVRVGRFD  236 (350)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~  236 (350)
                      ++++|...+++....... |+.  ..|..+...+...|++++|..+++....... .+..... +  .++.-+...|...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            999999999998876432 222  3455678888999999999999999864332 1111111 1  2233334444433


Q ss_pred             HHHHH--H-HHHHhcCC-CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHcCC
Q 018782          237 RATEV--W-ESMEKRGF-YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIP------P--YSSTVEMLRNRLVGLG  304 (350)
Q Consensus       237 ~a~~~--~-~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g  304 (350)
                      .+.+.  + ........ ............++... |+.+.|...++.+......      .  ..........++...|
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g  321 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG  321 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence            33332  1 11111100 11111112344444545 8999999999998754312      1  1222333345667899


Q ss_pred             ChhHHHHHHHHhhc
Q 018782          305 FLDIIEILADKMER  318 (350)
Q Consensus       305 ~~~~a~~~~~~~~~  318 (350)
                      ++++|.+.+.....
T Consensus       322 ~~~~A~~~L~~al~  335 (355)
T cd05804         322 NYATALELLGPVRD  335 (355)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=6.7e-10  Score=89.10  Aligned_cols=251  Identities=14%  Similarity=0.120  Sum_probs=132.7

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782           56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR  135 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  135 (350)
                      -.|++..++.-.+ ......+.+......+.+++...|+.+.++   ..+.... .|.......+...+...++-+.+..
T Consensus        13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence            3456666654444 222211122333444556666666655433   2332222 4444444444444433344444444


Q ss_pred             HHHHHhhCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          136 VLDSMKRYNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       136 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      -+++....... .+..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.+
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~  161 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID  161 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            44443332222 22222223334556667777777766542      255566666777777777777777777776532


Q ss_pred             CCCChhHHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 018782          215 VMPDRHTYNMVLKLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS  290 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  290 (350)
                        .| .+...+..++..    .+.+.+|..+|+++.+. ..++..+.+.+..+.... |++++|.+++.+....+ +-++
T Consensus       162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~-~~~~  235 (290)
T PF04733_consen  162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKD-PNDP  235 (290)
T ss_dssp             --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC--CCHH
T ss_pred             --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc-cCCH
Confidence              23 344445544432    22577777777776654 445666666666665544 77777777777776655 5566


Q ss_pred             HHHHHHHHHHHcCCCh-hHHHHHHHHhhccCCCc
Q 018782          291 STVEMLRNRLVGLGFL-DIIEILADKMERSTSCT  323 (350)
Q Consensus       291 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~  323 (350)
                      .++..++-+....|+. +.+.+.+.++....|..
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            7777777776667766 55667777777655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.28  E-value=3.7e-08  Score=83.06  Aligned_cols=265  Identities=11%  Similarity=0.038  Sum_probs=166.2

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHH---HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSI---LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN   94 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (350)
                      ..+...|++++|..+++.+....|.+...+..   ........+..+.+.+.++.. ....+........+...+...|+
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence            34567899999999999988777777766653   222222345566666666552 12223334455567788899999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccH--HHHHHHHHHHHccCCHHHHHHH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNV--FTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      +++|...+++..+.. +.+...+..+...+...|++++|..++++...... .++.  ..|..+...+...|++++|..+
T Consensus       130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999874 44566788889999999999999999999876431 1232  3455788899999999999999


Q ss_pred             HHHHHHcCC-CCCHHHH-H--HHHHHHhcccCHHHHHHH--H-HHHHhCCC-CCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782          172 LDEMIERGA-NPDEWSY-N--AILAYHCDRAEVNMALRL--I-TRMTKENV-MPDRHTYNMVLKLLVRVGRFDRATEVWE  243 (350)
Q Consensus       172 ~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  243 (350)
                      +++...... .+..... +  .++.-+...|....+.++  + ........ ............++...|+.+.|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            999864432 1122111 1  222223333433333222  2 11111100 1111222356677788999999999999


Q ss_pred             HHHhcCCC-------CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          244 SMEKRGFY-------PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       244 ~~~~~~~~-------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      .+......       ........+........|+.++|.+.+......
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98753211       111111122211222449999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.26  E-value=6.6e-10  Score=97.11  Aligned_cols=246  Identities=18%  Similarity=0.187  Sum_probs=177.4

Q ss_pred             cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782           39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS  118 (350)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  118 (350)
                      +..|+..+|..+|.-||..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+.           .|...||+
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt   87 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT   87 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence            78899999999999999999999999 9999998888889999999999999999887766           67888999


Q ss_pred             HHHHHHHhcCCHhHH---HHHHHHH----hhCCCCccHHHH--------------HHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          119 IFIHAFCEANDIHSV---FRVLDSM----KRYNLVPNVFTY--------------NCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a---~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      .|..+|...||+..-   .+.+..+    ...|+-.....+              ...+......|.++.+..++..+..
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv  167 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV  167 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            999999999997652   2212111    223322111111              1122222333444444444444332


Q ss_pred             cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782          178 RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY  257 (350)
Q Consensus       178 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  257 (350)
                      .... .  .+..+++-+.....+  ..++........-.|++.+|..++++-..+|+.+.|..++.+|.+.|+..+..-|
T Consensus       168 sa~~-~--p~~vfLrqnv~~ntp--vekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF  242 (1088)
T KOG4318|consen  168 SAWN-A--PFQVFLRQNVVDNTP--VEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF  242 (1088)
T ss_pred             cccc-c--hHHHHHHHhccCCch--HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence            2111 1  111134444433322  2333333222222589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF  305 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  305 (350)
                      +.++-+   . ++..-+..+++-|...|+.|+..|+...+-.+.+.|.
T Consensus       243 wpLl~g---~-~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  243 WPLLLG---I-NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             hhhhhc---C-ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999865   3 8889999999999999999999999999998888665

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.25  E-value=1.5e-07  Score=80.03  Aligned_cols=172  Identities=17%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      |+.+.-.+....++++|++.|..+....+.|...+.-+.-.-++.++++.....-.++.+.. +.....|..++.++.-.
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL  156 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence            33333333334444444444444433333344444444444444444444443333333331 11233344444444444


Q ss_pred             CCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHH------HhcCCHhHHHHHHHHHhhCCCCccHHH-HHHHHHHHHccCC
Q 018782           93 GNIDEAHGMLREMRSIG-AEPDAFSYSIFIHAF------CEANDIHSVFRVLDSMKRYNLVPNVFT-YNCIIRKLCKNEK  164 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~  164 (350)
                      |+...|..+++...+.. ..|+...+.......      .+.|..+.|.+.+..-... + .|... -..-...+.+.++
T Consensus       157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~  234 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQ  234 (700)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhh
Confidence            55555555555544332 123333333222211      1233333333333322211 0 11111 1122344556677


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHH
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNA  189 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~  189 (350)
                      +++|..++..++..  .||...|..
T Consensus       235 lEeA~~~y~~Ll~r--nPdn~~Yy~  257 (700)
T KOG1156|consen  235 LEEAVKVYRRLLER--NPDNLDYYE  257 (700)
T ss_pred             HHhHHHHHHHHHhh--CchhHHHHH
Confidence            77777777777766  344444433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.25  E-value=1.7e-07  Score=81.34  Aligned_cols=310  Identities=15%  Similarity=0.086  Sum_probs=176.2

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-DILAHNS   84 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~   84 (350)
                      +.-|+..|..+.-++...|+++.+.+.|++.....-...+.|+.+...+...|.-..|..+++.-......| +...+-.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            345778888888888899999999999998876555566777777777777777777777776654443222 2233222


Q ss_pred             HHHHHHh-cCCH--------------------------------------------------HHHHHHHHHHHhCCCCCC
Q 018782           85 LLEAMCK-AGNI--------------------------------------------------DEAHGMLREMRSIGAEPD  113 (350)
Q Consensus        85 l~~~~~~-~~~~--------------------------------------------------~~a~~~~~~~~~~~~~~~  113 (350)
                      .-..|.+ .+..                                                  .++++.+++..+.+. -|
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d  477 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD  477 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence            2222222 2223                                                  344444444444321 22


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----------
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-P----------  182 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----------  182 (350)
                      +.....+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....-.. .          
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence            33333344556677788888888888877654567777777777777777777777776655432100 0          


Q ss_pred             --------CHHH--------------------------------------------------------------------
Q 018782          183 --------DEWS--------------------------------------------------------------------  186 (350)
Q Consensus       183 --------~~~~--------------------------------------------------------------------  186 (350)
                              -..|                                                                    
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence                    0001                                                                    


Q ss_pred             ---------------HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782          187 ---------------YNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY  251 (350)
Q Consensus       187 ---------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  251 (350)
                                     |......+.+.++.++|...+.+..... +.....|......+...|.+.+|.+.|......  .
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--d  714 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--D  714 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--C
Confidence                           1111122222233333333333322221 122333444444555556666666666666543  3


Q ss_pred             CC-HHHHHHHHHHHhhccCcHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          252 PS-VSTYSVMVHGLCKKKGKLEEACK--YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       252 p~-~~~~~~ll~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      |+ +....++...+... |+..-|..  ++..+.+.+ +.++..|..+...+.+.|+.+.|.+.|....+...
T Consensus       715 P~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  715 PDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            33 33444444444443 66666655  777777776 66777777777777777777777777776655433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.23  E-value=2e-07  Score=73.46  Aligned_cols=307  Identities=11%  Similarity=0.051  Sum_probs=221.9

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH-NSLLEA   88 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~   88 (350)
                      +.-.--+...+...|++..|+.-|.....+.|.+-.++..-...|...|+-.-|+.-+++.++.  +||-..- ..-...
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence            3334456677778889999999998888776766666666777888899999999999888876  4553221 122356


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCC------------Hh--hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPD------------AF--SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +.++|.++.|..=|+.+++.....+            ..  .....+..+...||...|+.....+.+-. +-+...|..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~  194 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA  194 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence            7889999999999999988643211            11  12233455667889999999999998865 558888888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHH----HH---H--
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTY----NM---V--  225 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~---l--  225 (350)
                      -..+|...|++..|+.=++...+.... +..++-.+-..+...|+.+.++...++-++.  .||....    ..   +  
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence            899999999999999988888776544 5556666677778889999999888888774  4554321    11   1  


Q ss_pred             ----HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782          226 ----LKLLVRVGRFDRATEVWESMEKRGFYPSVST---YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN  298 (350)
Q Consensus       226 ----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  298 (350)
                          +......++|.++.+-.+...+.........   +..+-.++ +..|++.+|+....+..+.. +.|..++..-..
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~-~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe  349 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY-REDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE  349 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc-cccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence                1233456778888888888776532212222   33344443 44589999999999998876 566889999999


Q ss_pred             HHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          299 RLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       299 ~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      +|.-...++.|+.-|+...+.+.++.
T Consensus       350 A~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  350 AYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            99999999999999998887765554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.21  E-value=3.5e-07  Score=77.93  Aligned_cols=331  Identities=16%  Similarity=0.154  Sum_probs=173.9

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      +|-..++..-+.-|...+++...++..+.+..+.|....+.....-.+...|+-++|......-....+. +.++|..+.
T Consensus         4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g   82 (700)
T KOG1156|consen    4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG   82 (700)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHH
Confidence            3333333333333445566666666666666666666666666666666666666666666665554333 556666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----------------------------------HHHHHHHHhcCCHhH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSY----------------------------------SIFIHAFCEANDIHS  132 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------~~l~~~~~~~~~~~~  132 (350)
                      -.+....++++|++.|......+ +-|...+                                  ..+..++.-.|+...
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666543 2233333                                  333444444555555


Q ss_pred             HHHHHHHHhhCC-CCccHHHHHHHH------HHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccCHHHHH
Q 018782          133 VFRVLDSMKRYN-LVPNVFTYNCII------RKLCKNEKVEEAYQLLDEMIERGANPDEWS-YNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       133 a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~  204 (350)
                      |..+.+...+.. -.|+...+....      ....+.|.++.|.+.+..-... +. |... -..-...+.+.+++++|.
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~  239 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAV  239 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHH
Confidence            555555554332 124444433222      1223345555555544443322 11 1111 122234556778888888


Q ss_pred             HHHHHHHhCCCCCChhHHHHHH-HHHHHcCCHhHHH-HHHH----------------------------------HHHhc
Q 018782          205 RLITRMTKENVMPDRHTYNMVL-KLLVRVGRFDRAT-EVWE----------------------------------SMEKR  248 (350)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~----------------------------------~~~~~  248 (350)
                      .++..+...+  ||..-|.... .++.+-.+.-++. .+|.                                  .+.+.
T Consensus       240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            8888888754  5544443322 2222111111111 1111                                  11122


Q ss_pred             CC----------------------------------------------CCCHHHHH--HHHHHHhhccCcHHHHHHHHHH
Q 018782          249 GF----------------------------------------------YPSVSTYS--VMVHGLCKKKGKLEEACKYFEM  280 (350)
Q Consensus       249 ~~----------------------------------------------~p~~~~~~--~ll~~~~~~~~~~~~a~~~~~~  280 (350)
                      |+                                              .|....|.  .+...+-.. |+++.|..+++.
T Consensus       318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~  396 (700)
T KOG1156|consen  318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDL  396 (700)
T ss_pred             CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHH
Confidence            21                                              12332222  344444444 888888888888


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHH-Hhcccccccccccchhhc
Q 018782          281 MVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELAN-AMRGKTGFRKSRSEETEL  347 (350)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~  347 (350)
                      .+++- |.-...|..=.+.+...|++++|..++++..+.+  .++..+| -..++..+....+++.++
T Consensus       397 AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~  461 (700)
T KOG1156|consen  397 AIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEV  461 (700)
T ss_pred             HhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHH
Confidence            87774 4445666666788888888888888888887753  4444444 444444444444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.4e-07  Score=74.63  Aligned_cols=97  Identities=11%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 018782          224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL  303 (350)
Q Consensus       224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  303 (350)
                      .+.++.+..|++.+|+++|-.+....++ |..+|.+++..+..+++.++.|++++-++...+  .....+..+.+-|.++
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--e~fsLLqlIAn~CYk~  474 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--ERFSLLQLIANDCYKA  474 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--hHHHHHHHHHHHHHHH
Confidence            4667778888999999999888765444 666777766655566688888887765543221  1233455667788889


Q ss_pred             CChhHHHHHHHHhhccCCCc
Q 018782          304 GFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       304 g~~~~a~~~~~~~~~~~~~~  323 (350)
                      +++=-|-+.|+.+...+|.|
T Consensus       475 ~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  475 NEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             HHHHHHHHhhhHHHccCCCc
Confidence            98888888888887766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=3.9e-08  Score=82.47  Aligned_cols=85  Identities=16%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .+.|++.+|.-.|+...+..|.+...|..|.......++-..|+..+++..+.... +..+...|.-.|...|.-..|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHH
Confidence            44555555555555555544555555555555555555555555555555554222 44445555555555555555555


Q ss_pred             HHHHHH
Q 018782          101 MLREMR  106 (350)
Q Consensus       101 ~~~~~~  106 (350)
                      .++.-+
T Consensus       375 ~L~~Wi  380 (579)
T KOG1125|consen  375 MLDKWI  380 (579)
T ss_pred             HHHHHH
Confidence            555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.12  E-value=2.3e-06  Score=73.12  Aligned_cols=308  Identities=15%  Similarity=0.169  Sum_probs=187.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFT--PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      |-..+..+..+|++......|+......|  ....+|...+......+-++.+..++++.++.    ++..-+-.+..++
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~  180 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA  180 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence            44455666778888899999988766433  45567888888888888899999999988876    4455667777788


Q ss_pred             hcCCHHHHHHHHHHHHhCC------CCCCH--------------------------------------hhHHHHHHHHHh
Q 018782           91 KAGNIDEAHGMLREMRSIG------AEPDA--------------------------------------FSYSIFIHAFCE  126 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~------~~~~~--------------------------------------~~~~~l~~~~~~  126 (350)
                      +.+++++|-+.+.......      -+.+.                                      ..|+.|...|.+
T Consensus       181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr  260 (835)
T KOG2047|consen  181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR  260 (835)
T ss_pred             hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence            8888888887777664321      01111                                      245666666667


Q ss_pred             cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHHHcCC----
Q 018782          127 ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------------------VEEAYQLLDEMIERGA----  180 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~----  180 (350)
                      .|.+++|.++|++....  ..+...|..+.++|+.-..                      ++-.+.-|+.+.....    
T Consensus       261 ~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN  338 (835)
T KOG2047|consen  261 SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN  338 (835)
T ss_pred             hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence            77777777777666553  2344455555555543211                      1111222222221100    


Q ss_pred             -------CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC------hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          181 -------NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD------RHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       181 -------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                             ..++..|..-+.  +..|+..+-...+.++.+. +.|.      ...|..+.+.|...|+++.|..+|++..+
T Consensus       339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~  415 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK  415 (835)
T ss_pred             HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence                   001222222221  2234455555666665543 2221      24577888889999999999999999887


Q ss_pred             cCCCCC---HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----------CC------CHHHHHHHHHHHHcCCChh
Q 018782          248 RGFYPS---VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-----------PP------YSSTVEMLRNRLVGLGFLD  307 (350)
Q Consensus       248 ~~~~p~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~  307 (350)
                      ...+--   ..+|......=.++ .+++.|+++.+.....--           ++      +...|..+++.-...|-++
T Consensus       416 V~y~~v~dLa~vw~~waemElrh-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  416 VPYKTVEDLAEVWCAWAEMELRH-ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             CCccchHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            533211   12233333322334 788888888887643211           11      3345666666666778888


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHH
Q 018782          308 IIEILADKMERSTSCTIQELANA  330 (350)
Q Consensus       308 ~a~~~~~~~~~~~~~~~~~~~~~  330 (350)
                      ....+++++......+|+.+.|.
T Consensus       495 stk~vYdriidLriaTPqii~Ny  517 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIATPQIIINY  517 (835)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHH
Confidence            89999999998888888877765

>PLN02789 farnesyltranstransferase

Probab=99.12  E-value=3.9e-07  Score=74.31  Aligned_cols=213  Identities=9%  Similarity=0.049  Sum_probs=137.1

Q ss_pred             HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      ..+-..+...++.++|+.+.+.+....|.+..+|+....++...| .+++++..++++.+.+.+ +..+|+.-...+.+.
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l  119 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL  119 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence            344445566778888888888887766777777777777777666 578888888888877544 566677665555556


Q ss_pred             CCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc---CCH--
Q 018782           93 GNI--DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN---EKV--  165 (350)
Q Consensus        93 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~--  165 (350)
                      |..  ++++.+++.+.+.. +-+..+|+...-++...|+++++++.++++++.+ +.+..+|+....++.+.   |..  
T Consensus       120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~  197 (320)
T PLN02789        120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA  197 (320)
T ss_pred             CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence            653  56777777777654 3466677777777777788888888888887765 33556666655554443   222  


Q ss_pred             --HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782          166 --EEAYQLLDEMIERGANPDEWSYNAILAYHCDR----AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR  231 (350)
Q Consensus       166 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  231 (350)
                        ++......+++...+. +...|+-+...+...    +...+|.+.+.+....++ .+......|+..|+.
T Consensus       198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence              3556666666665443 566666666666552    233456666666555432 345556666666654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=6.7e-09  Score=83.40  Aligned_cols=240  Identities=15%  Similarity=0.161  Sum_probs=158.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  165 (350)
                      ++.+.-.|++..++.-.+ ......+.+......+.+++...|+.+.++   ..+.... .|.......+...+...++.
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            344556788888887666 332222223445667788899999877544   4443433 57777776666555544555


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNA-ILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      +.+..-+++.......++..++.. ....+...|+++.|++++...      .+.......+.++.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            566555555443332322333333 334566789999999887542      4567778889999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHhh---ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          245 MEKRGFYPSVSTYSVMVHGLCK---KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       245 ~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      |.+.  ..|... ..+..++..   ..+.+.+|..+|+++.+. .++++.+...+..++...|++++|.+++.+....++
T Consensus       157 ~~~~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  157 MQQI--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HHCC--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             HHhc--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            9875  445443 333333332   214689999999998766 478999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhccccccccc
Q 018782          322 CTIQELANAMRGKTGFRKS  340 (350)
Q Consensus       322 ~~~~~~~~~l~~~~~~~~~  340 (350)
                      ..++.+.|.+.......+.
T Consensus       233 ~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-T
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            9988888876655554444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.07  E-value=4.2e-07  Score=83.89  Aligned_cols=229  Identities=13%  Similarity=0.090  Sum_probs=137.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      +...|-..|.-....++.++|.++.++++.. +.+.     ...|.++++.-...|.-+...++|+++.+..  -.-.+|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence            5556666666666777777777777776643 2111     2345666666666666666777777776643  234566


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHH
Q 018782          153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PDRHTYNMVLKLLVR  231 (350)
Q Consensus       153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~  231 (350)
                      ..|...|.+.+.+++|.++++.|.++-. -....|...+..+.+.++-+.|..++.++.+.-++ -........+..-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            6777777777777777777777776533 35666777777777777777777777776664211 122333444555566


Q ss_pred             cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHH
Q 018782          232 VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS--TVEMLRNRLVGLGFLDII  309 (350)
Q Consensus       232 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a  309 (350)
                      .|+.+.++.+|+.....- +--...|+.++..-.++ |+.+.+..+|++++..+++|-..  .|...+..-...|+-+.+
T Consensus      1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~-~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKH-GDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            777777777777766541 12345666667665544 77777777777777776655432  333333333334554444


Q ss_pred             HHH
Q 018782          310 EIL  312 (350)
Q Consensus       310 ~~~  312 (350)
                      ..+
T Consensus      1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred             HHH
Confidence            333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.2e-06  Score=71.64  Aligned_cols=94  Identities=15%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782          227 KLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  306 (350)
                      ..+.+.|++..|.+.|.++++.. +-|...|.....+|.+. |.+..|++-.+..++.+ |+....|..=..++....++
T Consensus       366 ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y  442 (539)
T KOG0548|consen  366 NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL-GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY  442 (539)
T ss_pred             HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777653 23455566555555544 77777777777766665 55556666666666666777


Q ss_pred             hHHHHHHHHhhccCCCc
Q 018782          307 DIIEILADKMERSTSCT  323 (350)
Q Consensus       307 ~~a~~~~~~~~~~~~~~  323 (350)
                      +.|.+.|.+..+.++..
T Consensus       443 dkAleay~eale~dp~~  459 (539)
T KOG0548|consen  443 DKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHHHHHHhcCchh
Confidence            77777777777665443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.05  E-value=6.4e-06  Score=70.56  Aligned_cols=240  Identities=11%  Similarity=0.117  Sum_probs=129.6

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhh-------cCCCCHHHHHHHHHHHhccCCHH---HHHHHHHHHHhcCCCC
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-------EFTPTVKTYSILVRGLGDVGELS---EARKLFDEMLERKCPV   77 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~   77 (350)
                      .++..-+-.+..++..+++++|-+.+..+..       ..+.+...|..+....++.-+.-   ....+++.+..+-...
T Consensus       167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq  246 (835)
T KOG2047|consen  167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ  246 (835)
T ss_pred             cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence            4455566677778888888888887777632       22344445555555444433221   2333444443331111


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-------------------------------
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE-------------------------------  126 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------  126 (350)
                      --..|++|..-|.+.|.++.|..+|++....-  .+..-|+.+...|+.                               
T Consensus       247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a  324 (835)
T KOG2047|consen  247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA  324 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence            23456667777777777777777766655431  122222222222211                               


Q ss_pred             -----------------------------------cCCHhHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHccCCH
Q 018782          127 -----------------------------------ANDIHSVFRVLDSMKRYNLVP------NVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus       127 -----------------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~  165 (350)
                                                         .|+..+...+|.+..+. +.|      -...|..+.+.|-..|+.
T Consensus       325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence                                               12233334444443322 111      123466777788888888


Q ss_pred             HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC----------C-------ChhHHHHH
Q 018782          166 EEAYQLLDEMIERGANPD---EWSYNAILAYHCDRAEVNMALRLITRMTKENVM----------P-------DRHTYNMV  225 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l  225 (350)
                      +.|..+|++..+-..+--   ..+|......-.++.+++.|+++++......-.          |       +...|...
T Consensus       404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y  483 (835)
T KOG2047|consen  404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY  483 (835)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence            888888888776543311   234444445555777888888887776432110          0       12345555


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782          226 LKLLVRVGRFDRATEVWESMEKRGF  250 (350)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~~~~~~~  250 (350)
                      ++.....|-++....+|+.+.+..+
T Consensus       484 ~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  484 ADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhc
Confidence            5555566777777777777766543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=7.3e-06  Score=69.48  Aligned_cols=97  Identities=13%  Similarity=0.002  Sum_probs=63.9

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------------------
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-------------------   73 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------   73 (350)
                      .-+=++.+...|++++|.+...++....|.+...+..-+-++++.+++++|+.+.+.-...                   
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence            3344566777888999999988888877888888888888888888888888655532210                   


Q ss_pred             ---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 018782           74 ---------KCPV-DILAHNSLLEAMCKAGNIDEAHGMLREMRSIG  109 (350)
Q Consensus        74 ---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  109 (350)
                               |..+ +..+...-...+.+.|++++|+.+|+.+.+++
T Consensus        95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence                     1111 11233333455666777777777777776553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=2.3e-07  Score=71.78  Aligned_cols=280  Identities=11%  Similarity=0.036  Sum_probs=193.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI-FIHAF  124 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~  124 (350)
                      -++..+..+.+..++++|++++..-.++..+ +......|..+|....++..|-..|+++...  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            3666777778889999999999988887433 7788889999999999999999999999875  455544432 34566


Q ss_pred             HhcCCHhHHHHHHHHHhhCCCCccHHHHHHHH--HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782          125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCII--RKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  202 (350)
                      .+.+.+..|+++...|...   ++...-..-+  ......+++..+..++++....|   +..+.+.......+.|+++.
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            6788999999999988763   2222211112  22345788888988888876433   44455555555678999999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-------------CCHH--------HHHHHH
Q 018782          203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-------------PSVS--------TYSVMV  261 (350)
Q Consensus       203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~ll  261 (350)
                      |.+-|+...+-+--.....|+..+ +..+.|+++.|.+...+++++|++             ||+.        .-+.++
T Consensus       163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~  241 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV  241 (459)
T ss_pred             HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence            999999988764323345676544 566789999999999999988754             2221        122333


Q ss_pred             HHH------hhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccc
Q 018782          262 HGL------CKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGK  334 (350)
Q Consensus       262 ~~~------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  334 (350)
                      .++      ..+.|+++.|.+.+..|--. .-..|+.|+..+.-.-. .+++-...+-+.-+...+|.|+..+.|.++..
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly  320 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY  320 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            332      11348888888888877422 22446777766544333 34455555556666677889998888888765


Q ss_pred             cc
Q 018782          335 TG  336 (350)
Q Consensus       335 ~~  336 (350)
                      +.
T Consensus       321 CK  322 (459)
T KOG4340|consen  321 CK  322 (459)
T ss_pred             hh
Confidence            54

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.02  E-value=5.2e-06  Score=69.64  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782          220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN  298 (350)
Q Consensus       220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  298 (350)
                      -+|..+++.-.+...+..|+.+|.++.+.+..+ ++..+++++.-+|.  ++..-|.++|+--... ...++......+.
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs--kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS--KDKETAFRIFELGLKK-FGDSPEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc--CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence            567788888889999999999999999887777 78888999998874  7999999999976554 2456666677788


Q ss_pred             HHHcCCChhHHHHHHHHhhcc
Q 018782          299 RLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       299 ~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      -+...|+-..+..+|++...+
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhc
Confidence            888889999999999998877

>PLN02789 farnesyltranstransferase

Probab=99.01  E-value=1.8e-06  Score=70.43  Aligned_cols=136  Identities=6%  Similarity=-0.004  Sum_probs=63.1

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      ..+...++.++|+.+++++++.+.. +..+|+.-..++...| ++++++..++++.+... -+..+|+.....+.+.|+.
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence            3344455555666666655554322 3444444444444444 34555555555554421 2333444333333333331


Q ss_pred             --hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782          131 --HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL  191 (350)
Q Consensus       131 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  191 (350)
                        +++..+++++.+.. +-+..+|+...-++...|+++++++.++++++.++. +...|+...
T Consensus       123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~  183 (320)
T PLN02789        123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY  183 (320)
T ss_pred             hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence              34445554444433 234455555555555555555555555555554433 334444333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.01  E-value=1.6e-07  Score=74.24  Aligned_cols=60  Identities=12%  Similarity=0.098  Sum_probs=47.9

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGAN-P-DEWSYNAILAYHCDRAEVNMALRLITRMTKE  213 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  213 (350)
                      .+...+.+.|++++|...++...+.... | ....+..+..++...|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556788899999999999998876332 2 3567888889999999999999988887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=6e-08  Score=83.56  Aligned_cols=223  Identities=13%  Similarity=0.099  Sum_probs=175.4

Q ss_pred             CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782            5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS   84 (350)
Q Consensus         5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   84 (350)
                      +++|-...-..+...+...|-...|..+|+++.        .|...+.+|...|+..+|..+..+..++  +|++..|..
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            345555555667788888999999999999874        5677889999999999999999888874  678888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      +........-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            888877777778888887775432       12222233344788999999998876654 4567788888888889999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      ++.|...|.......+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus       535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999999888876433 56789999999999999999999999999887 34566777888888999999999999988


Q ss_pred             HHh
Q 018782          245 MEK  247 (350)
Q Consensus       245 ~~~  247 (350)
                      +.+
T Consensus       613 ll~  615 (777)
T KOG1128|consen  613 LLD  615 (777)
T ss_pred             HHH
Confidence            874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.00  E-value=1.2e-06  Score=81.07  Aligned_cols=217  Identities=8%  Similarity=0.049  Sum_probs=124.7

Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782           32 FFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-----DILAHNSLLEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      =|+++....|.+...|-..|......++.+.|.+++++.+.. +.+     -...|.++++.-..-|.-+...++|+++.
T Consensus      1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence            344444445555666666666666666666666666666543 211     13345555555555566666666666666


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHH
Q 018782          107 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEW  185 (350)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~  185 (350)
                      +..  -.-..|..|...|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-++ -...
T Consensus      1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred             Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence            542  112345566666666666666666666665542 235556666666666666666666666666554211 1223


Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782          186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS  253 (350)
Q Consensus       186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~  253 (350)
                      ...-.+..-.+.|+.+++..+|+..+...+ --...|+..++.-.++|+.+.++.+|++....++.|-
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            333444444566666666666666665533 2345666666666666666666666666666655443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=3.4e-07  Score=77.06  Aligned_cols=254  Identities=15%  Similarity=0.101  Sum_probs=172.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      ..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            34556788888998889888887544 78888888888888888889999999888863 33556777778888888888


Q ss_pred             hHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782          131 HSVFRVLDSMKRYNLVPNVFTYNC-------IIRKLCKNEKVEEAYQLLDEMI-ERGANPDEWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       131 ~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~  202 (350)
                      ..|+..++.-+....+ -.+.-..       .-..+.....+....++|-++. ..+..+|+.....|.-.|--.|++++
T Consensus       370 ~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            8888888876554311 0000000       0011222223444555555544 34444677788888888888899999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHH
Q 018782          203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEM  280 (350)
Q Consensus       203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~  280 (350)
                      |.+.|+.++...+ -|..+||.|...++...+..+|...|++..+.  .|+.+  -||.-|. |. ..|.+++|.+.|-.
T Consensus       449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS-~m-NlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGIS-CM-NLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhh-hh-hhhhHHHHHHHHHH
Confidence            9999999888643 46678899998888888899999999998875  56543  3554443 33 44899999888876


Q ss_pred             HHhC---C------CCCCHHHHHHHHHHHHcCCChhHHHHH
Q 018782          281 MVDE---G------IPPYSSTVEMLRNRLVGLGFLDIIEIL  312 (350)
Q Consensus       281 ~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~  312 (350)
                      ++..   +      ..++..+|..|-.++.-.++.|.+.+.
T Consensus       524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            5432   1      112345777777777777777654443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.95  E-value=6.8e-06  Score=78.36  Aligned_cols=303  Identities=13%  Similarity=0.091  Sum_probs=188.1

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCC-------C--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH----HH
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFT-------P--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI----LA   81 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~   81 (350)
                      .....+...|+++++..++........       +  .......+...+...|++++|...+++....-...+.    ..
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            334455678899999888887643211       1  1122233445566789999999999987763111121    24


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHhh----CCCC--c-cH
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGA---EP--DAFSYSIFIHAFCEANDIHSVFRVLDSMKR----YNLV--P-NV  149 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~  149 (350)
                      .+.+...+...|++++|...+.+.....-   .+  ...+...+...+...|+++.|...+++...    .+..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            45566677889999999999888764211   11  123445566778889999999998887644    2211  1 22


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHH--
Q 018782          150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERG--ANP--DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTY--  222 (350)
Q Consensus       150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--  222 (350)
                      ..+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|+++.|.+.+.......... ....+  
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~  653 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA  653 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence            334455666777899999999888875431  111  12334445566778899999998888875421110 11111  


Q ss_pred             ---HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHH
Q 018782          223 ---NMVLKLLVRVGRFDRATEVWESMEKRGFYPSV---STYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIPP-YSS  291 (350)
Q Consensus       223 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  291 (350)
                         ...+..+...|+.+.|...+............   ..+..+..++... |++++|...+++....    |... ...
T Consensus       654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~  732 (903)
T PRK04841        654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNR  732 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence               11224445678899999887776542111111   1123344444444 8999999999987653    3222 234


Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          292 TVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       292 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      +...+..++.+.|+.++|...+.+...
T Consensus       733 ~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        733 NLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566778889999999999999888764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.93  E-value=5.2e-07  Score=71.26  Aligned_cols=187  Identities=12%  Similarity=0.104  Sum_probs=123.0

Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HH
Q 018782          112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV---FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE--WS  186 (350)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~  186 (350)
                      .....+..+...+...|+++.|...|+++.... +.+.   .++..+..++...|++++|...++++.+..+....  .+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345567778888888999999999999887653 2222   46677788888899999999999998876443222  13


Q ss_pred             HHHHHHHHhcc--------cCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782          187 YNAILAYHCDR--------AEVNMALRLITRMTKENVMPDR-HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY  257 (350)
Q Consensus       187 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  257 (350)
                      +..+..++...        |+++.|.+.++.+....  |+. ..+..+.....    ...      ....        ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~~--------~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLAG--------KE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHHH--------HH
Confidence            44444444443        67788888888887753  332 22222211111    000      0000        01


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      ..+...+... |++++|...++.+....  -+.....+..++.++...|++++|..+++.+....
T Consensus       170 ~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       170 LYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            1233345555 99999999999998763  12346788899999999999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.93  E-value=3.6e-07  Score=69.49  Aligned_cols=168  Identities=14%  Similarity=0.050  Sum_probs=135.7

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782           40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI  119 (350)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  119 (350)
                      .|.+..+ ..+-..+...|+-+....+....... .+-+....+..+....+.|++..|+..+++..... ++|..+|+.
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~  139 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL  139 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence            3445556 77777888888888888888876654 23367777778899999999999999999998763 678889999


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  199 (350)
                      +.-+|.+.|+.+.|..-|.+..+.. +.+....+.+.-.+.-.|+++.|..++......+.. |...-..+.......|+
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~  217 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD  217 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence            9999999999999999999988764 346778888888888999999999999988877544 77777778888889999


Q ss_pred             HHHHHHHHHHHHh
Q 018782          200 VNMALRLITRMTK  212 (350)
Q Consensus       200 ~~~a~~~~~~~~~  212 (350)
                      ++.|.++...-..
T Consensus       218 ~~~A~~i~~~e~~  230 (257)
T COG5010         218 FREAEDIAVQELL  230 (257)
T ss_pred             hHHHHhhcccccc
Confidence            9999988765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.92  E-value=1.1e-06  Score=80.07  Aligned_cols=222  Identities=11%  Similarity=0.129  Sum_probs=127.9

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      +.+...+..|+..+...+++++|.++.+...+..+ -....|..+...+.+.++...+.-+                 .+
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            45667788888888888888888888886666522 2444444444456666664444433                 22


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV  200 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  200 (350)
                      +.......++..+..+...+...+  -+..++..+..+|-+.|+.++|..+|+++.+..+. +..+.+.+...|... +.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence            233333334433344444444432  34446666666666777777777777776666533 566666666666666 66


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-------------------CCCCCHHHHHHHH
Q 018782          201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-------------------GFYPSVSTYSVMV  261 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~p~~~~~~~ll  261 (350)
                      ++|.+++.+.+..               +...+++..+.++|.++...                   |..--..++-.+.
T Consensus       166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~  230 (906)
T PRK14720        166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY  230 (906)
T ss_pred             HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            6666666665543               22223333333333333322                   1111223333444


Q ss_pred             HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782          262 HGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV  301 (350)
Q Consensus       262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  301 (350)
                      ..| ...++++++..+++.+.+.. +.|......++.+|.
T Consensus       231 ~~y-~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        231 EPY-KALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHH-hhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            443 44478889999999888886 567777777777776

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=1.9e-06  Score=78.51  Aligned_cols=147  Identities=12%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..|+..+...+++++|.++.+......|.....|..+...+.+.++.+++.-+  .+...               
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~---------------   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS---------------   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---------------
Confidence            4556788999999999999999999987776677777777777777788876666555  33322               


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                      .....++..+..+...+...+  -+...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... ++++|
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence            222233333333333333321  222344444555555555555555555554443 33444445555444444 55555


Q ss_pred             HHHHHHHH
Q 018782          169 YQLLDEMI  176 (350)
Q Consensus       169 ~~~~~~~~  176 (350)
                      ..++.+..
T Consensus       169 ~~m~~KAV  176 (906)
T PRK14720        169 ITYLKKAI  176 (906)
T ss_pred             HHHHHHHH
Confidence            55544443

>PF12854 PPR_1: PPR repeat

Probab=98.90  E-value=2.6e-09  Score=55.09  Aligned_cols=33  Identities=27%  Similarity=0.576  Sum_probs=25.9

Q ss_pred             CCCCcCHhhHHHHHHHHHccCChHHHHHHHHHh
Q 018782            4 FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA   36 (350)
Q Consensus         4 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~   36 (350)
                      +|++||..+|+.+|.++++.|++++|.++|++|
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            477788888888888888888888888887776

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.89  E-value=1.7e-05  Score=62.98  Aligned_cols=272  Identities=13%  Similarity=0.081  Sum_probs=196.2

Q ss_pred             CcCHhhHHHHH---HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----
Q 018782            7 KPSIYDLDQLL---HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD-----   78 (350)
Q Consensus         7 ~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----   78 (350)
                      ..|+..|.++.   ..|...|+-..|+.-+++....-|.-......-...+.+.|.++.|..-|+..++......     
T Consensus        66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea  145 (504)
T KOG0624|consen   66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA  145 (504)
T ss_pred             cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence            34555555544   4567778888888888777653233334444556678899999999999999988743211     


Q ss_pred             -------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH
Q 018782           79 -------ILA--HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV  149 (350)
Q Consensus        79 -------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  149 (350)
                             ...  ....+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.-++...+.. .-++
T Consensus       146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnT  223 (504)
T KOG0624|consen  146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNT  223 (504)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccch
Confidence                   111  2233455667899999999999999863 5688888889999999999999999888887754 3466


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcccCHHHHHHHHHHHHhCCCC
Q 018782          150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS----YNAI---------LAYHCDRAEVNMALRLITRMTKENVM  216 (350)
Q Consensus       150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~  216 (350)
                      .++.-+-..+...|+.+.++...++.++.+  ||...    |..+         +......++|-++++..+...+..+.
T Consensus       224 e~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~  301 (504)
T KOG0624|consen  224 EGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE  301 (504)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence            677777788889999999999999988764  44322    2111         12234567788888888887776433


Q ss_pred             CChh---HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          217 PDRH---TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       217 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      ....   .+..+-.++...+++.+|++...+..+.  .|+ +.++.--..+|... ..++.|+.-|+...+.+
T Consensus       302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~d-E~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGD-EMYDDAIHDYEKALELN  371 (504)
T ss_pred             ccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhcC
Confidence            2222   3455667777889999999999999875  455 77777777888766 89999999999998876

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.87  E-value=2.4e-06  Score=74.05  Aligned_cols=220  Identities=11%  Similarity=0.030  Sum_probs=173.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .+|-...-..+...+.+.|-...|..+++++.         .|..++.+|...|+..+|..+..+..+.  +|+...|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            44444555667778888899999999988874         3666888999999999999999888773  688999988


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR  234 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (350)
                      +.+......-+++|.++.+....+       .-..+.....+.++++++.+.|+.-.+.+. ....+|..+..+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence            888888877788888888775443       111222223457889999999988777542 456788888888889999


Q ss_pred             HhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 018782          235 FDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILA  313 (350)
Q Consensus       235 ~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  313 (350)
                      ++.|.+.|......  .|| ...|+.+-.+|.+. ++-.+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+
T Consensus       535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence            99999999998875  444 56788888888877 89999999999999888 667788888888899999999999999


Q ss_pred             HHhh
Q 018782          314 DKME  317 (350)
Q Consensus       314 ~~~~  317 (350)
                      .++.
T Consensus       611 ~rll  614 (777)
T KOG1128|consen  611 HRLL  614 (777)
T ss_pred             HHHH
Confidence            8875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.86  E-value=1.2e-06  Score=66.64  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-HHcCC--HhHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLL-VRVGR--FDRA  238 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a  238 (350)
                      .++.+++...++...+.++. +...|..+...|...|+++.|...+++...... .+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            33444444444444444322 444455555555555555555555555444332 2334444444432 33343  2455


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          239 TEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       239 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      .+++++..+.+.. +...+..+...+... |++++|+..|+++.+..
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQ-ADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Confidence            5555555443211 222233333333222 55555555555554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=2.3e-06  Score=65.21  Aligned_cols=165  Identities=15%  Similarity=0.081  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      |... ..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            4455 66777788889888888888876543 34455667778999999999999999999998765 789999999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  237 (350)
                      +|.+.|++++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+. -|..+-..+.......|++++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence            999999999999999999987554 667788888888999999999999999888653 366777888889999999999


Q ss_pred             HHHHHHHHHh
Q 018782          238 ATEVWESMEK  247 (350)
Q Consensus       238 a~~~~~~~~~  247 (350)
                      |.++...-..
T Consensus       221 A~~i~~~e~~  230 (257)
T COG5010         221 AEDIAVQELL  230 (257)
T ss_pred             HHhhcccccc
Confidence            9998876554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.83  E-value=2.6e-07  Score=66.46  Aligned_cols=96  Identities=8%  Similarity=-0.100  Sum_probs=66.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE  126 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (350)
                      +..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            44556666777777777777777776633 366777777777777777777777777777653 3456666777777777


Q ss_pred             cCCHhHHHHHHHHHhhCC
Q 018782          127 ANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~~  144 (350)
                      .|+.++|...|+...+..
T Consensus       105 ~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            777777777777776643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.82  E-value=1.8e-06  Score=77.70  Aligned_cols=148  Identities=11%  Similarity=0.063  Sum_probs=116.9

Q ss_pred             hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782           38 HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY  117 (350)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  117 (350)
                      ..++.++..+..|.....+.|++++|+.+++...+..+ -+......+...+.+.+++++|+..+++..... +-+....
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~  157 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI  157 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence            35677788888999999999999999999999888733 367777888888999999999999999998864 3355567


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018782          118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNA  189 (350)
Q Consensus       118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  189 (350)
                      ..+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~  227 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence            777888889999999999999988744 4457888888888899999999999998887652 233444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=6e-07  Score=68.21  Aligned_cols=160  Identities=8%  Similarity=0.058  Sum_probs=122.0

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      -.|...|+++......+.+...  ..         .+...++.+++...+++..+.+. .+...|..+...|...|++++
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~~~--~~---------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~   91 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLADP--LH---------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDN   91 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHhCc--cc---------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHH
Confidence            4577899998876665433221  11         22236778888888888887754 489999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCC--HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHA-FCEAND--IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE  174 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  174 (350)
                      |...|++..+.. +.+...+..+..+ +...|+  .++|..++++..+.+ +.+..++..+...+.+.|++++|...|++
T Consensus        92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370         92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999874 3466777777776 467677  599999999998876 45788899999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHH
Q 018782          175 MIERGANPDEWSYNAILAY  193 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~ll~~  193 (350)
                      +.+... |+..-+. +|..
T Consensus       170 aL~l~~-~~~~r~~-~i~~  186 (198)
T PRK10370        170 VLDLNS-PRVNRTQ-LVES  186 (198)
T ss_pred             HHhhCC-CCccHHH-HHHH
Confidence            988753 3444443 3343

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=7.3e-05  Score=65.64  Aligned_cols=285  Identities=16%  Similarity=0.170  Sum_probs=184.0

Q ss_pred             cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhH
Q 018782           39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP-DAFSY  117 (350)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~  117 (350)
                      .+..++..|..+.-++...|+++.+.+.|++....-+. ....|+.+...+...|.-..|..+++........| +...+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            45678899999999999999999999999998765333 67889999999999999999999999887643223 23223


Q ss_pred             HHHHHHHH-hcCCHhHH--------------------------------------------------HHHHHHHhhCCCC
Q 018782          118 SIFIHAFC-EANDIHSV--------------------------------------------------FRVLDSMKRYNLV  146 (350)
Q Consensus       118 ~~l~~~~~-~~~~~~~a--------------------------------------------------~~~~~~~~~~~~~  146 (350)
                      -..-..|. +.+..+++                                                  .+.+++..+.+ +
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~  475 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P  475 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence            22222222 22333333                                                  33333333322 1


Q ss_pred             ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC----------
Q 018782          147 PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM----------  216 (350)
Q Consensus       147 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------  216 (350)
                      .|..+..-+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++..|+.+.+.....-..          
T Consensus       476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH  555 (799)
T ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence            1222222233345667788999999999988866768888888777777777777777666554221000          


Q ss_pred             --------------------------------------------------------------------------------
Q 018782          217 --------------------------------------------------------------------------------  216 (350)
Q Consensus       217 --------------------------------------------------------------------------------  216 (350)
                                                                                                      
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence                                                                                            


Q ss_pred             ------CC------hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          217 ------PD------RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       217 ------~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                            |+      ...|......+.+.++.++|...+.+..+.. .-....|...-..+..+ |..++|.+.|......
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK-GQLEEAKEAFLVALAL  713 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhc
Confidence                  00      0112233344455555666665555555431 11222233332333334 8888888888888877


Q ss_pred             CCCCCHHHHHHHHHHHHcCCChhHHHH--HHHHhhccCCCcHHHHH
Q 018782          285 GIPPYSSTVEMLRNRLVGLGFLDIIEI--LADKMERSTSCTIQELA  328 (350)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~  328 (350)
                      + |.++....++..++.+.|+..-|..  ++..+.+.++..+..++
T Consensus       714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~  758 (799)
T KOG4162|consen  714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY  758 (799)
T ss_pred             C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence            6 6677788888999999998888887  88888888888776654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.81  E-value=1.2e-06  Score=62.96  Aligned_cols=109  Identities=7%  Similarity=-0.095  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      .++++..+.    ++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+......
T Consensus        14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            455555554    33345556677777888888888888877753 3466677777777788888888888888777654


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                       +.+...+..+..++...|++++|...|+...+..
T Consensus        89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             4566777777777777888888888887777663

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2.2e-05  Score=60.12  Aligned_cols=118  Identities=13%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC----D  196 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~  196 (350)
                      ...|+..+++++|++..+...      +......=+..+.+..+++-|...+++|.+..   +..|.+-|..++.    .
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            344555666666665555411      22222222344445555566666666665431   3344444444433    2


Q ss_pred             ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      .+....|.-+|+++.++ ..|+..+.+-...++...|++++|..++++....
T Consensus       186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            33455566666665543 3455555555555666666666666666665544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.79  E-value=7.9e-05  Score=71.22  Aligned_cols=298  Identities=11%  Similarity=0.069  Sum_probs=181.7

Q ss_pred             HHccCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC------CCC--HHHHHHHHHHHH
Q 018782           20 LCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC------PVD--ILAHNSLLEAMC   90 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~   90 (350)
                      ....|++..+..+++.+... ...++.........+...|+++++..++......-.      .+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            34456666666666555321 112222334445555678899999999987754311      111  122223345566


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CC-CccHHHHHHHHHHHHc
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRY----NL-VPNVFTYNCIIRKLCK  161 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~  161 (350)
                      ..|++++|...+++..+.-...+.    ...+.+...+...|+++.|...+++....    |. .....+...+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            899999999999998763111221    23455666777899999999999887542    21 1112345556677888


Q ss_pred             cCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC--CCC--ChhHHHHHHHHHH
Q 018782          162 NEKVEEAYQLLDEMIER----GAN--P-DEWSYNAILAYHCDRAEVNMALRLITRMTKEN--VMP--DRHTYNMVLKLLV  230 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~  230 (350)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+.......  ..+  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998886643    211  1 12234445556677899999999988865431  112  2334455667788


Q ss_pred             HcCCHhHHHHHHHHHHhcC--CCCCHH--HH--HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 018782          231 RVGRFDRATEVWESMEKRG--FYPSVS--TY--SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLV  301 (350)
Q Consensus       231 ~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~  301 (350)
                      ..|++++|.+.+.......  ......  ..  ...+..+.. .|+.+.|..++...........   ...+..+..++.
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM-TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH-CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            8999999999998875421  111110  10  011122233 4899999999877654321111   112456778889


Q ss_pred             cCCChhHHHHHHHHhhc
Q 018782          302 GLGFLDIIEILADKMER  318 (350)
Q Consensus       302 ~~g~~~~a~~~~~~~~~  318 (350)
                      ..|++++|...+++...
T Consensus       703 ~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        703 LLGQFDEAEIILEELNE  719 (903)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999998764

>PF12854 PPR_1: PPR repeat

Probab=98.79  E-value=1.1e-08  Score=52.82  Aligned_cols=31  Identities=35%  Similarity=0.605  Sum_probs=14.6

Q ss_pred             CCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                      +.||..+|+.||++|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            4444444444444444444444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=1e-05  Score=61.92  Aligned_cols=254  Identities=12%  Similarity=0.073  Sum_probs=155.7

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782           52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH  131 (350)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  131 (350)
                      +-+.-.|++..++..-.......  -+...-..+.++|...|.+.....-   .... -.|....+..+......-++.+
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhH
Confidence            34444577777776665544332  2444444556677777765543322   2221 1233334444444333344444


Q ss_pred             HHH-HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          132 SVF-RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       132 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      ... .+.+.+.......+......-...|+..|++++|++......      +......=+..+.+..+.+-|.+.++.|
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 344444444333343444444567888889999888877622      2333333345556777888888888888


Q ss_pred             HhCCCCCChhHHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 018782          211 TKENVMPDRHTYNMVLKLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI  286 (350)
Q Consensus       211 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~  286 (350)
                      .+-   -+..|.+.|..++.+    .+.+..|.-+|++|.+. ..|+..+.+....+.... |++++|..+++...... 
T Consensus       164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd-  237 (299)
T KOG3081|consen  164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKD-  237 (299)
T ss_pred             Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhcc-
Confidence            773   355677777777664    34688888899998864 567888887777665444 89999999999888876 


Q ss_pred             CCCHHHHHHHHHHHHcCCCh-hHHHHHHHHhhccCCCc
Q 018782          287 PPYSSTVEMLRNRLVGLGFL-DIIEILADKMERSTSCT  323 (350)
Q Consensus       287 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~  323 (350)
                      ..++.++..++-+-...|.. +...+.+.++....+..
T Consensus       238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            56777777776666666655 44556777777665544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=1.4e-06  Score=78.28  Aligned_cols=147  Identities=7%  Similarity=0.029  Sum_probs=128.0

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      .+.++..+..|..+..+.|.+++|..+++.+..-.|.+......++.++.+.+++++|+..+++.....+. +....+.+
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            45668888899999999999999999999999988999999999999999999999999999999998554 78888999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      ..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.. .+....|+..
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            999999999999999999999843 3457789999999999999999999999987653 2344454443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1.3e-05  Score=60.90  Aligned_cols=190  Identities=12%  Similarity=0.080  Sum_probs=139.1

Q ss_pred             ccCChHHHHHHHHHhhh----c-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           22 KRKHVKVAHQFFDNAKH----E-FTPTV-KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ...+.++.++++..+..    + ..++. ..|..++-+....|+.+.|...++++..+- |-+..+-..-.-.+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence            45577888888888643    3 44454 446677778888999999999999988873 33444333333345568999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ++|+++|+.+.+.. +.|..++---+...-..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999999875 456667766666666777777888888877765 4679999999999999999999999999998


Q ss_pred             HHcCCCCCHHHHHHHHHHHh---cccCHHHHHHHHHHHHhCCC
Q 018782          176 IERGANPDEWSYNAILAYHC---DRAEVNMALRLITRMTKENV  215 (350)
Q Consensus       176 ~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~  215 (350)
                      .-..+. ++..+..+...+.   ...+...+.+.+.+.++...
T Consensus       181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            876322 4445555555444   34567788899999888643

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.70  E-value=0.00019  Score=64.17  Aligned_cols=226  Identities=14%  Similarity=0.124  Sum_probs=160.7

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      ...+++..|++....+.+..|....+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++|..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            45789999999999988776665555444444567899999999999888776555 88999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------HHHHHH
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------VEEAYQ  170 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~  170 (350)
                      +|++....  .|+......+..+|.+.+++.+-.++--++.+. .+.+.+.|-++++.+...-.          ..-|..
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            99999875  466778888889999998887765555555443 34566666666666654321          234556


Q ss_pred             HHHHHHHcC-CCCCHHHHHHHHHHHhcccCHHHHHHHHHH-HHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          171 LLDEMIERG-ANPDEWSYNAILAYHCDRAEVNMALRLITR-MTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       171 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      .++.+.+.+ .--+..-.......+-..+++++|.+++.. ..+.-..-+...-+.-+..+...++|.+..++-.++...
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            666666554 221222233333445578889999999943 434333334455556778888999999999999999887


Q ss_pred             CC
Q 018782          249 GF  250 (350)
Q Consensus       249 ~~  250 (350)
                      |.
T Consensus       256 ~~  257 (932)
T KOG2053|consen  256 GN  257 (932)
T ss_pred             CC
Confidence            43

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.67  E-value=2.3e-06  Score=61.12  Aligned_cols=101  Identities=17%  Similarity=0.133  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      |.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l   91 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA   91 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence            3344555555566666666666666666665543 2255556666666666666666666666665543 2344455555


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhC
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ..++...|++++|...|+...+.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            55666666666666666665553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=0.00018  Score=61.43  Aligned_cols=302  Identities=12%  Similarity=0.075  Sum_probs=154.5

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------------------------
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV------------------------   77 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------   77 (350)
                      +.+..++|+..++-+.   +.+..+...-...+.+.|++++|.++|+.+.+.+.+-                        
T Consensus        91 rlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            4455555555554221   2344466666778889999999999999997763221                        


Q ss_pred             ---CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCC---C-C--C-H------h-hHHHHHHHHHhcCCHhHHHHHH
Q 018782           78 ---DILAHNS---LLEAMCKAGNIDEAHGMLREMRSIGA---E-P--D-A------F-SYSIFIHAFCEANDIHSVFRVL  137 (350)
Q Consensus        78 ---~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~--~-~------~-~~~~l~~~~~~~~~~~~a~~~~  137 (350)
                         ...+|..   ....++..|++.+|+++++...+.+.   . -  + .      . +-..+.-.+-..|+..+|..++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence               0112222   23345678999999999999854321   0 0  1 0      1 1122334456789999999999


Q ss_pred             HHHhhCCCCccHHH----HHHHHHHHHccCCH----------------HHHHHHH-------------------------
Q 018782          138 DSMKRYNLVPNVFT----YNCIIRKLCKNEKV----------------EEAYQLL-------------------------  172 (350)
Q Consensus       138 ~~~~~~~~~~~~~~----~~~l~~~~~~~g~~----------------~~a~~~~-------------------------  172 (350)
                      ...++.. ++|...    -|.++..-....-+                +.++..+                         
T Consensus       248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~  326 (652)
T KOG2376|consen  248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV  326 (652)
T ss_pred             HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            9887765 233211    11121110000000                0000000                         


Q ss_pred             HHHHHc--CCCCCHHHHHHHHHHHh--cccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH-----
Q 018782          173 DEMIER--GANPDEWSYNAILAYHC--DRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE-----  243 (350)
Q Consensus       173 ~~~~~~--~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----  243 (350)
                      ++....  +..| ...+.+++..+.  +...+..+.+++....+....-...+....+......|+++.|.+++.     
T Consensus       327 r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~  405 (652)
T KOG2376|consen  327 RELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES  405 (652)
T ss_pred             HHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            000000  1111 233444444333  222456666666666554333234455556666777788888888777     


Q ss_pred             ---HHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782          244 ---SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE------GIPPYSSTVEMLRNRLVGLGFLDIIEILAD  314 (350)
Q Consensus       244 ---~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  314 (350)
                         .+.+.+..|-.+.+  ++..+.+. ++.+.|..++...+..      +-..-..++..++..-.+.|+-++|..+++
T Consensus       406 ~~ss~~~~~~~P~~V~a--iv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le  482 (652)
T KOG2376|consen  406 WKSSILEAKHLPGTVGA--IVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE  482 (652)
T ss_pred             hhhhhhhhccChhHHHH--HHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence               55555555544332  33323333 4444455555444321      101122233444444455677777777777


Q ss_pred             HhhccCCCcHHHHHHHh
Q 018782          315 KMERSTSCTIQELANAM  331 (350)
Q Consensus       315 ~~~~~~~~~~~~~~~~l  331 (350)
                      ++.+.++...+.+...+
T Consensus       483 el~k~n~~d~~~l~~lV  499 (652)
T KOG2376|consen  483 ELVKFNPNDTDLLVQLV  499 (652)
T ss_pred             HHHHhCCchHHHHHHHH
Confidence            77776555555444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=2.1e-06  Score=61.30  Aligned_cols=105  Identities=16%  Similarity=0.038  Sum_probs=90.4

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      .....+...+...|++++|.+.|+.+....|.+...+..+..++...|++++|...+++..+.+ +.+...+..+..++.
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~   96 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            4456677888899999999999999988778899999999999999999999999999988874 447888888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYS  118 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~  118 (350)
                      ..|++++|...|+...+.  .|+...+.
T Consensus        97 ~~g~~~~A~~~~~~al~~--~p~~~~~~  122 (135)
T TIGR02552        97 ALGEPESALKALDLAIEI--CGENPEYS  122 (135)
T ss_pred             HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence            999999999999999985  35554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=0.00011  Score=55.98  Aligned_cols=188  Identities=14%  Similarity=0.106  Sum_probs=128.4

Q ss_pred             cCCHHHHHHHHHHHHhc---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782           57 VGELSEARKLFDEMLER---K-CPVDILA-HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH  131 (350)
Q Consensus        57 ~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  131 (350)
                      ..+.++..+++.+++..   | ..++..+ |..++-+....|+.+.|...++++... ++-+...-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            34677777777776632   3 3444433 444555666788888888888888776 3333333333333445678888


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782          132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT  211 (350)
Q Consensus       132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  211 (350)
                      +|+++++.+.+.+ +.|..++---+...-..|+.-+|++-+....+.-+. |...|.-+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            8999998888776 456666665566666677777888888887776444 88888888888888889998888888887


Q ss_pred             hCCCCCChhHHHHHHHHHHHcC---CHhHHHHHHHHHHhc
Q 018782          212 KENVMPDRHTYNMVLKLLVRVG---RFDRATEVWESMEKR  248 (350)
Q Consensus       212 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~  248 (350)
                      -.. +.++..+..+...+...|   ++..+.++|.+..+.
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            753 234455555665554443   567788888888775

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=0.00042  Score=63.13  Aligned_cols=158  Identities=15%  Similarity=0.089  Sum_probs=88.1

Q ss_pred             cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 018782          148 NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLK  227 (350)
Q Consensus       148 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  227 (350)
                      .+.+|+.+..+-.+.|...+|.+-|-+.      .|+..|..++....+.|.+++-.+++....+..-.|..  =+.|+-
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence            3456777777777777777776665332      26667777777777777777777777776665444433  345667


Q ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 018782          228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLD  307 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  307 (350)
                      +|++.+++.+.++++.       .||......+-.-+... |.++.|.-+|..         ...|..|...+...|+++
T Consensus      1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~-~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE-KMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred             HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh-hhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHH
Confidence            7777777666554431       24544444444443333 555554444432         223444444555555555


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHhc
Q 018782          308 IIEILADKMERSTSCTIQELANAMR  332 (350)
Q Consensus       308 ~a~~~~~~~~~~~~~~~~~~~~~l~  332 (350)
                      .|....++...  ..+|..+..+++
T Consensus      1238 ~AVD~aRKAns--~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1238 GAVDAARKANS--TKTWKEVCFACV 1260 (1666)
T ss_pred             HHHHHhhhccc--hhHHHHHHHHHh
Confidence            55554444432  234444444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=0.00018  Score=60.11  Aligned_cols=236  Identities=14%  Similarity=0.115  Sum_probs=135.4

Q ss_pred             HHHccC-ChHHHHHHHHHhhh----cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 018782           19 ALCKRK-HVKVAHQFFDNAKH----EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCK   91 (350)
Q Consensus        19 ~~~~~g-~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~   91 (350)
                      .+.+.| +.....+.|+++..    +..|...    ++..=.-..++.++...-++++..+  ..|+...+...+.+...
T Consensus       211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~  286 (484)
T COG4783         211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE  286 (484)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence            334444 34455666776652    2222221    2222233345556666666665432  23455555555555444


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      ...-..+-.++.+..+.  .....-|. ....+...|+.+.|+..++.+.... +.|..........+.+.++..+|.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~  362 (484)
T COG4783         287 ALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIER  362 (484)
T ss_pred             cccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence            33333333333333221  11122233 3334456677888888888776653 44555556666777788888888888


Q ss_pred             HHHHHHcCCCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782          172 LDEMIERGANPD-EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF  250 (350)
Q Consensus       172 ~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  250 (350)
                      ++++....  |+ ....-.+..++.+.|++.+|..+++...... +.|+..|..|.++|...|+..++..-..+..    
T Consensus       363 ~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~----  435 (484)
T COG4783         363 LKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY----  435 (484)
T ss_pred             HHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH----
Confidence            88877763  33 4555666777778888888888887776654 4567778888888888887777766554432    


Q ss_pred             CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          251 YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       251 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                                    ... |+++.|...+....+.
T Consensus       436 --------------~~~-G~~~~A~~~l~~A~~~  454 (484)
T COG4783         436 --------------ALA-GRLEQAIIFLMRASQQ  454 (484)
T ss_pred             --------------HhC-CCHHHHHHHHHHHHHh
Confidence                          113 6677777766666655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.57  E-value=8.2e-06  Score=58.93  Aligned_cols=87  Identities=11%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDA--FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE  163 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  163 (350)
                      ...+...|++++|...|+.+......++.  .....+...+...|++++|+..++......  .....+.....++.+.|
T Consensus        55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence            34444455555555555555544311111  122223444445555555555554432221  22333444445555555


Q ss_pred             CHHHHHHHHHH
Q 018782          164 KVEEAYQLLDE  174 (350)
Q Consensus       164 ~~~~a~~~~~~  174 (350)
                      ++++|...|+.
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            55555555543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=0.0001  Score=61.49  Aligned_cols=182  Identities=14%  Similarity=0.111  Sum_probs=113.5

Q ss_pred             CChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           24 KHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        24 g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .++..+...-+.++.   ...|+...+...+........-..+..++.+..+   +-......-..-.+...|+.++|+.
T Consensus       251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~  327 (484)
T COG4783         251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALK  327 (484)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHH
Confidence            345555555555544   2345555555555544443333333333332222   1122333334445556788888888


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      .++.+... .+-|+..+......+.+.++.++|.+.++++....  |+ ....-.+..++.+.|++.+|..++.......
T Consensus       328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            88887775 33455555666677888888888888888887753  44 5556667778888888888888888877664


Q ss_pred             CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      .. |+..|..|..+|...|+..++.....+...
T Consensus       405 p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         405 PE-DPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CC-CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            43 777888888888888887777766655443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=0.00029  Score=56.51  Aligned_cols=159  Identities=10%  Similarity=0.060  Sum_probs=94.1

Q ss_pred             HHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           17 LHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ++-+....++..|+.+++--.. +......+-..+..++...|++++|...+..+.+. -.++...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence            3444556677778777776544 22222334445566677788888888888877764 344556666666666666777


Q ss_pred             HHHHHHHHHHHhCC--------------CCC-----------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH
Q 018782           96 DEAHGMLREMRSIG--------------AEP-----------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF  150 (350)
Q Consensus        96 ~~a~~~~~~~~~~~--------------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  150 (350)
                      .+|..+-....+..              -+-           +..---+|.......-.+.+|+++++.....+  |.-.
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~  185 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYI  185 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhh
Confidence            77766554432210              000           00111223333333456788888888887654  5555


Q ss_pred             HHHH-HHHHHHccCCHHHHHHHHHHHHHc
Q 018782          151 TYNC-IIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       151 ~~~~-l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      ..|. +.-+|.+..-++-+.+++.-..+.
T Consensus       186 alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence            5554 345677888888888888776655

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.49  E-value=6.6e-05  Score=67.81  Aligned_cols=162  Identities=14%  Similarity=0.046  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VDILAHNSLLEAMC   90 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~   90 (350)
                      .|..+...|+...+...|.+.|+....-.+.+..........|++..+++.|..+.-..-+.... .-...|....-.|.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            35666677776667777888888877655667777778888888888888888774333222100 01112222334455


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHccCCHHHHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-FTYNCIIRKLCKNEKVEEAY  169 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~  169 (350)
                      ..++...|+.-|+...... +-|...|..++.+|.+.|++..|.++|.+.....  |+. ..---..-..+..|.+.+|.
T Consensus       574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHH
Confidence            6666777777777666543 3356677777777877788777777777776542  322 11111222334556666666


Q ss_pred             HHHHHHH
Q 018782          170 QLLDEMI  176 (350)
Q Consensus       170 ~~~~~~~  176 (350)
                      ..+..+.
T Consensus       651 d~l~~ii  657 (1238)
T KOG1127|consen  651 DALGLII  657 (1238)
T ss_pred             HHHHHHH
Confidence            6665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=0.0002  Score=63.74  Aligned_cols=208  Identities=13%  Similarity=0.129  Sum_probs=106.1

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhh--c------CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH--E------FTPTV-KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL   80 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   80 (350)
                      ..+|..+.+.|.+..+++.|.-.+-.|.+  +      ...+. ..=....-.....|.+++|+.+|++-+..       
T Consensus       757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~-------  829 (1416)
T KOG3617|consen  757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY-------  829 (1416)
T ss_pred             hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence            34566666666666666666655555532  0      00111 22222223334566677777777665543       


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----------C------
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----------N------  144 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~------  144 (350)
                        ..|=..|...|.|++|.++-+.--..  . -..||......+-..+|++.|+++|++...+          .      
T Consensus       830 --DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~  904 (1416)
T KOG3617|consen  830 --DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ  904 (1416)
T ss_pred             --HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence              22334455667777777765543221  1 1235555666666777788887777653211          1      


Q ss_pred             ---CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782          145 ---LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT  221 (350)
Q Consensus       145 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  221 (350)
                         -..+...|.....-+-..|+.+.|+.+|.....         |-++++..|-.|+.++|-++-++      .-|...
T Consensus       905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA  969 (1416)
T KOG3617|consen  905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA  969 (1416)
T ss_pred             HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence               012344455555556667777777777766543         22233333344444444433322      112233


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHH
Q 018782          222 YNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      ...|.+.|...|++.+|..+|.+
T Consensus       970 cYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  970 CYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHH
Confidence            33445555555555555555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.47  E-value=1.2e-05  Score=67.13  Aligned_cols=129  Identities=13%  Similarity=0.060  Sum_probs=98.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      +......|+..+...++++.|..+|+++.+..  |+  ....+++.+...++-.+|.+++.+..+.. +.+...+..-..
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~  242 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE  242 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            44555666777777888888999998888773  33  44557777878888888888888888653 345666666777


Q ss_pred             HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      .+...++.+.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            7888888899999988888764 34556888888999999999999888877653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.46  E-value=1.4e-05  Score=66.81  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK  158 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  158 (350)
                      -.....|+..+...++++.|+++|+++.+..  |+  ....++..+...++-.+|.+++++..+.. +.+......-...
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF  243 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3444566777788899999999999999864  44  34557888888899999999999988754 4466677777788


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT  211 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  211 (350)
                      +.+.++++.|+.+.+++.+..+. +..+|..|..+|...|+++.|+..+..+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999987433 56799999999999999999999888764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.45  E-value=0.00077  Score=60.52  Aligned_cols=224  Identities=10%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782           54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLE--AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH  131 (350)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  131 (350)
                      ....+++..|.+...++.++  .|+.. |...+.  ...+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence            34567777777777777665  22322 222222  345677778887777776655433 6667777777777888888


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc-C---------HH
Q 018782          132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA-E---------VN  201 (350)
Q Consensus       132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~  201 (350)
                      +|..+|+...+.  .|+......+..+|.+.+.+.+-.+.--++-+. .+.....+-++++...+.. .         ..
T Consensus        95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            888888777664  366666666777777777665433333333332 1223444444444443211 1         12


Q ss_pred             HHHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHhHHHHHH-HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782          202 MALRLITRMTKEN-VMPDRHTYNMVLKLLVRVGRFDRATEVW-ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE  279 (350)
Q Consensus       202 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~  279 (350)
                      -|.+..+.+.+.+ .--+..-.......+...|.+++|++++ ....+.-..-+...-+.-+.. .+..+++.+..++-.
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl-lk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL-LKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhcChHHHHHHHH
Confidence            3444444444433 1112222222333445566677777776 333332111122222222332 233467777777777


Q ss_pred             HHHhCC
Q 018782          280 MMVDEG  285 (350)
Q Consensus       280 ~~~~~~  285 (350)
                      ++...|
T Consensus       251 ~Ll~k~  256 (932)
T KOG2053|consen  251 RLLEKG  256 (932)
T ss_pred             HHHHhC
Confidence            776665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.40  E-value=5.4e-05  Score=54.67  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLE   87 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~   87 (350)
                      |..++..+ ..++...+...++.+....+.+   ......+...+...|++++|...|+........|+  ......+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444444 2555566655566655544444   23333344555556666666666666665532222  122333455


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782           88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDS  139 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  139 (350)
                      .+...|++++|+..++.....  ......+.....++.+.|+.++|...|+.
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555666666666666543222  12333444555566666666666666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=4.3e-05  Score=67.70  Aligned_cols=241  Identities=17%  Similarity=0.159  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------C
Q 018782           42 PTVKTYSILVR--GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-G--------A  110 (350)
Q Consensus        42 ~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~  110 (350)
                      -|..+...+++  .|...|+.+.|.+-++-++      +...|..+.+.|.+.++.+-|.-.+-.|... |        -
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            45555555554  4566778888777776655      3467777888887777766666555444321 0        1


Q ss_pred             CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018782          111 EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAI  190 (350)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  190 (350)
                      .++ .+=....-.....|-+++|..+|++..+..         .|=+.|-..|.+++|.++-+.--+...   ..||...
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y  864 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY  864 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence            121 122223333456677778887777766532         333556667777777776654322221   2344444


Q ss_pred             HHHHhcccCHHHHHHHHHHHHh----------CC---------CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782          191 LAYHCDRAEVNMALRLITRMTK----------EN---------VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY  251 (350)
Q Consensus       191 l~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  251 (350)
                      ...+-..++.+.|++.|++...          ..         -..|...|......+...|+.+.|+.+|....+    
T Consensus       865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----  940 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----  940 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence            4555556666666666654311          10         122445556666666677888888888877765    


Q ss_pred             CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          252 PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       252 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                           |-.+++..|.. |+.++|-.+-++   .|   |...-..+.+.|...|++.+|..+|.+..
T Consensus       941 -----~fs~VrI~C~q-Gk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 -----YFSMVRIKCIQ-GKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             -----hhhheeeEeec-cCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 44555555655 777777666543   22   55556677777777777777777776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=0.00043  Score=58.50  Aligned_cols=228  Identities=16%  Similarity=0.111  Sum_probs=134.5

Q ss_pred             HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH------
Q 018782           14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE------   87 (350)
Q Consensus        14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------   87 (350)
                      ..+..+..+..++..|++-+....... .+...++....+|...|.+..+...-+...+.|-. ...-|+.+..      
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence            345666667777888888877766643 56666677777777888777777777766665433 3333333333      


Q ss_pred             -HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHccCCH
Q 018782           88 -AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-FTYNCIIRKLCKNEKV  165 (350)
Q Consensus        88 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~  165 (350)
                       ++.+.++++.++..|.+....-..|+.         ..+....+++....+...-.+  |.. .-...-...+.+.|++
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCH
Confidence             344456667777777775543222221         122233444444444433322  221 1122225566777778


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                      ..|...|.+++...+. |...|.....+|.+.+.+..|+.-.+...+.+. +....|..=..++....++++|.+.|.+.
T Consensus       375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777777533 677777777777777777777777766666532 23344444455555566777777777777


Q ss_pred             HhcCCCCCHHHHH
Q 018782          246 EKRGFYPSVSTYS  258 (350)
Q Consensus       246 ~~~~~~p~~~~~~  258 (350)
                      .+.  .|+..-+.
T Consensus       453 le~--dp~~~e~~  463 (539)
T KOG0548|consen  453 LEL--DPSNAEAI  463 (539)
T ss_pred             Hhc--CchhHHHH
Confidence            765  34444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.37  E-value=3e-05  Score=53.86  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLL   86 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~   86 (350)
                      ++..+...+...|++++|...|+.+....|.+   ...+..+..++.+.|+++.|.+.|+.+......  ....++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            44455555556666666666666654433222   334555566666666666666666665543211  1234455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC
Q 018782           87 EAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .++...|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5555666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.00086  Score=61.22  Aligned_cols=260  Identities=14%  Similarity=0.127  Sum_probs=154.4

Q ss_pred             cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML  102 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  102 (350)
                      -+++++|.++-++..     .+.+|..+..+-.+.|.+.+|++-|-+.      .|+..|..++....+.|.+++..+++
T Consensus      1088 i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence            467788888777764     4578899999999999999888877443      27788889999999999999999998


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 018782          103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER----  178 (350)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  178 (350)
                      ...++..-+|..  =+.|+-+|++.+++.+...++.       -|+......+..-|...|.++.|.-+|......    
T Consensus      1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La 1227 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLA 1227 (1666)
T ss_pred             HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHH
Confidence            888877655554  3567888888888777655441       144444444444444444444444333221100    


Q ss_pred             ----------------CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782          179 ----------------GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVW  242 (350)
Q Consensus       179 ----------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  242 (350)
                                      ....+..||..+-.+|...+.+..|     +|...++.....-..-++..|-..|-+++...++
T Consensus      1228 ~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred             HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence                            0011444555555555554444332     2222223334445667777788888888888777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHcCCChhHHH
Q 018782          243 ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIP------PYSSTVEMLRNRLVGLGFLDIIE  310 (350)
Q Consensus       243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~  310 (350)
                      +...... +.....|+-+.-.|.+  =++++..+.++-.-.. ++|      .....|..++-.|.+-..++.|.
T Consensus      1303 Ea~LGLE-RAHMgmfTELaiLYsk--ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1303 EAGLGLE-RAHMGMFTELAILYSK--YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             Hhhhchh-HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            7665321 1233445555444443  3555555544443221 211      13455666666666666666554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.35  E-value=1.5e-05  Score=67.01  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 018782           39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER--KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFS  116 (350)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  116 (350)
                      +.+.+......++..+....+++.+..++-+....  ....-..+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            45666777777788777777888888888777654  2222234456888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN  162 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  162 (350)
                      ++.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888876666566666666666555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.34  E-value=2.3e-05  Score=65.89  Aligned_cols=121  Identities=12%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782          144 NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT  221 (350)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  221 (350)
                      +.+.+......++..+....+.+.+..++.+....  ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            33556666677777777777777777777776654  2222344556777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL  264 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~  264 (350)
                      ++.|+..+.+.|++..|.++...|...+...+..++...+.++
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~  183 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC  183 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            7777777777777777777777777665555666655555543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.32  E-value=1.5e-06  Score=45.49  Aligned_cols=33  Identities=36%  Similarity=0.681  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS  253 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~  253 (350)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.30  E-value=1.7e-05  Score=52.34  Aligned_cols=90  Identities=20%  Similarity=0.151  Sum_probs=39.5

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      +...+...|++++|...++.+....+.+...+..+..++...+++++|.+.++....... .+..++..+...+...|++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   84 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY   84 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence            333444444555555554444433333334444444444444444444444444444321 1223444444444444444


Q ss_pred             HHHHHHHHHHH
Q 018782           96 DEAHGMLREMR  106 (350)
Q Consensus        96 ~~a~~~~~~~~  106 (350)
                      +.|...+....
T Consensus        85 ~~a~~~~~~~~   95 (100)
T cd00189          85 EEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.29  E-value=1.8e-06  Score=44.77  Aligned_cols=33  Identities=33%  Similarity=0.669  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      .+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666655554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.26  E-value=2.1e-06  Score=44.84  Aligned_cols=31  Identities=42%  Similarity=0.828  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEP  112 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  112 (350)
                      |+.++.+|++.|++++|.++|.+|.+.|+.|
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            4444444444444444444444444444444

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.26  E-value=3.4e-05  Score=54.89  Aligned_cols=100  Identities=14%  Similarity=0.047  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      .+......+...+...|++++|.++|+.+....+. +..-|..|..++-..|++.+|+..|....... +-|+..+..+.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag  110 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence            45566677777888999999999999998887544 77888889999999999999999999998876 35777888899


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhC
Q 018782          122 HAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      .++...|+.+.|.+.|+..+..
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999988664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.24  E-value=0.0001  Score=51.15  Aligned_cols=98  Identities=15%  Similarity=0.067  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIFI  121 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~  121 (350)
                      ++..++..+.+.|++++|.+.|+.+.+....  .....+..+..++.+.|+++.|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555555666666666666666544211  11334445556666666666666666665543211  1123444555


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhC
Q 018782          122 HAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      .++...|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5555566666666666665554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.23  E-value=0.0014  Score=59.69  Aligned_cols=219  Identities=12%  Similarity=0.084  Sum_probs=150.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      +...|+..|-+.....+ .=...|..|...|+...|...|.+.|++..+.. ..+..........|+...+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            36777777777766432 224478889999998889999999999998765 4567788888999999999999999844


Q ss_pred             HHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          174 EMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       174 ~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      ..-+.... .-...|....-.|...++...+..-|+......+ .|...|..+..+|...|.+..|.++|.++...  .|
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence            33332111 0112233344456788899999999999888654 47788999999999999999999999998875  55


Q ss_pred             CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE------GIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      +..--...........|.+.+++..+......      +...-..++......+.-.|-...+..++++-.
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi  698 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI  698 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            54332222222222448999999988877543      111233445555555555566666666666543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.23  E-value=6.4e-05  Score=62.96  Aligned_cols=103  Identities=15%  Similarity=0.068  Sum_probs=85.4

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      -...+...|+++.|++.|+++....|.+...|..+..++...|++++|+..++++++... .+...|..+..++...|++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence            345667789999999999999887788899999999999999999999999999988743 3778888899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      ++|+..|++..+..  |+.......+
T Consensus        87 ~eA~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         87 QTAKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            99999999998853  4444333333

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.23  E-value=2.8e-06  Score=44.04  Aligned_cols=28  Identities=43%  Similarity=0.585  Sum_probs=10.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIG  109 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  109 (350)
                      |+.++.+|.+.|+++.|.++|+.|.+.|
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g   31 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKEQG   31 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3333333333333333333333333333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.22  E-value=5.2e-05  Score=61.22  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD-VGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      .+|..++....+.+..+.|..+|.++......+..+|......-.. .++.+.|.++|+...+. ++.+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            3566667777776677777777777765434445555555555333 45555577777776665 444666777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDA---FSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ...++.+.|..+|++.... +.++.   ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777654 22222   36666666666667777777766666553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.20  E-value=0.0017  Score=55.21  Aligned_cols=151  Identities=12%  Similarity=0.214  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      .+.....+++++..-..--..+|..+++...+..-++.|..+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            45556666666543222223356667777777777888888888887766555 5666677776665 457777888887


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      --.+.-.. ++.--...+..+...++-..+..+|++....++.++  ...|..++.--..-|++..+.++-+++..
T Consensus       426 LGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            65554211 333344556666677777778888888777644443  35777777777777888877777766654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.19  E-value=5.8e-05  Score=49.88  Aligned_cols=76  Identities=14%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC--------CHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEAN--------DIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      .|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++..        ..-..+.+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34444445666666666666666665 556666666665554432        122344455555555555555555555


Q ss_pred             HHHHH
Q 018782          156 IRKLC  160 (350)
Q Consensus       156 ~~~~~  160 (350)
                      +..+.
T Consensus       111 l~~Ll  115 (120)
T PF08579_consen  111 LGSLL  115 (120)
T ss_pred             HHHHH
Confidence            54443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.16  E-value=0.0001  Score=52.53  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL  300 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  300 (350)
                      ....+...+...|++++|.++|+-+...  .|....|..=+.+++...|++++|+..|......+ +.++..+..+..++
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            3445556667788888888888887764  45555555555555666688888888888888777 67788888888888


Q ss_pred             HcCCChhHHHHHHHHhhc
Q 018782          301 VGLGFLDIIEILADKMER  318 (350)
Q Consensus       301 ~~~g~~~~a~~~~~~~~~  318 (350)
                      ...|+.+.|.+.|+....
T Consensus       114 L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        114 LACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888888888888887654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.15  E-value=0.00044  Score=60.91  Aligned_cols=17  Identities=12%  Similarity=0.034  Sum_probs=9.3

Q ss_pred             HHHHHHHccCChHHHHH
Q 018782           15 QLLHALCKRKHVKVAHQ   31 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~   31 (350)
                      +.|+.|.+.|....|..
T Consensus       620 aaiqlyika~~p~~a~~  636 (1636)
T KOG3616|consen  620 AAIQLYIKAGKPAKAAR  636 (1636)
T ss_pred             HHHHHHHHcCCchHHHH
Confidence            34556666666555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.15  E-value=8e-05  Score=49.03  Aligned_cols=95  Identities=20%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV  301 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  301 (350)
                      +..+...+...|++++|...++.+.+... .+...+..+...+... |++++|.+.++...... +.+..++..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKL-GKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            34455556666666666666666655411 1223333344444333 66666776666666554 444456666666666


Q ss_pred             cCCChhHHHHHHHHhhcc
Q 018782          302 GLGFLDIIEILADKMERS  319 (350)
Q Consensus       302 ~~g~~~~a~~~~~~~~~~  319 (350)
                      ..|+++.|...+.+..+.
T Consensus        80 ~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          80 KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHhHHHHHHHHHHHHcc
Confidence            667777776666665543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.14  E-value=7.6e-06  Score=52.82  Aligned_cols=80  Identities=18%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             cCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFTP--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .|+++.|+.+++++....|.  +...+..+..++.+.|++++|..++++ .+.+.. +......+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666666666666553331  334444456666666666666666655 222111 22333344566666666666666


Q ss_pred             HHHH
Q 018782          101 MLRE  104 (350)
Q Consensus       101 ~~~~  104 (350)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.12  E-value=0.0013  Score=58.17  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782          123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  202 (350)
                      +.....+|.+|+.+++.+....  ....-|..+...|...|+++.|.++|-+.-         .++-.|..|.+.|+|+.
T Consensus       741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence            3344556666666666665543  223345556667777777777777664421         23445566677777777


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782          203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE  243 (350)
Q Consensus       203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  243 (350)
                      |.++-.+..  |.......|-.-..-+-..|.+.+|.++|-
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence            766655432  223333444444444555566666555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.12  E-value=0.0002  Score=57.88  Aligned_cols=130  Identities=11%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEAYQLLDEMIERGANPDEWSYNAILAYH  194 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  194 (350)
                      +|..++....+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+.- ..+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            45555566666666666666666665432 2233333333333222 344555666666655542 22555555666666


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          195 CDRAEVNMALRLITRMTKENVMPD---RHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ...++.+.|..+|++.... +.++   ...|...++.-.+.|+++.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6666666666666665543 2111   135666666666666666666666666553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.11  E-value=0.0021  Score=50.75  Aligned_cols=184  Identities=11%  Similarity=0.133  Sum_probs=113.5

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH---NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI  119 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  119 (350)
                      ++..+-.....+...|++++|.+.|+++....+. +....   -.++.++.+.+++++|...+++..+..+.-....+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4444545666667789999999999999886433 23332   4567888999999999999999988643222223333


Q ss_pred             HHHHHHh--cC---------------C---HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          120 FIHAFCE--AN---------------D---IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       120 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      .+.+.+.  .+               |   ...|+..|+.+++.               |=.+.-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence            3333221  11               1   12344555555543               22233344555444444322 


Q ss_pred             CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782          180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE--NVMPDRHTYNMVLKLLVRVGRFDRATEVWESME  246 (350)
Q Consensus       180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  246 (350)
                         =..---.+...|.+.|.+..|..-++.+++.  +.+........++.+|...|..++|..+...+.
T Consensus       174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence               0011114556678888888888888888875  223344566778888989999998888777664

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.10  E-value=9.9e-06  Score=52.27  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             cCCHhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782          232 VGRFDRATEVWESMEKRGFY-PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE  310 (350)
Q Consensus       232 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  310 (350)
                      .|+++.|..+++++.+.... |+...+..+..++... |++++|..+++. ...+ +.+......+.+++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            46677777777777654221 1233333345555544 777777777766 3222 223444455567777777777777


Q ss_pred             HHHHH
Q 018782          311 ILADK  315 (350)
Q Consensus       311 ~~~~~  315 (350)
                      +.+++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77664

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.09  E-value=0.00015  Score=48.02  Aligned_cols=76  Identities=16%  Similarity=0.405  Sum_probs=43.8

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhcc-------CcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782          226 LKLLVRVGRFDRATEVWESMEKRGF-YPSVSTYSVMVHGLCKKK-------GKLEEACKYFEMMVDEGIPPYSSTVEMLR  297 (350)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  297 (350)
                      |..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++.       ++.-..+.+++.|+..+++|+..+|..++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3344444666666666666666666 566666666666655432       12334555666666666666666666666


Q ss_pred             HHHH
Q 018782          298 NRLV  301 (350)
Q Consensus       298 ~~~~  301 (350)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            6554

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.07  E-value=0.00077  Score=54.70  Aligned_cols=126  Identities=14%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             HHhcc-cCHHHHHHHHHHHHhC----CC-CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-----CCHH--HHHH
Q 018782          193 YHCDR-AEVNMALRLITRMTKE----NV-MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-----PSVS--TYSV  259 (350)
Q Consensus       193 ~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~--~~~~  259 (350)
                      .|... ++++.|.+.|++..+.    +. ..-...+..+...+.+.|++++|.++|++.......     .+..  .+..
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            34444 6666666666665432    10 001234556667777777888888888777653221     1221  1233


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHc--CCChhHHHHHHHHhhccC
Q 018782          260 MVHGLCKKKGKLEEACKYFEMMVDEG--IPP--YSSTVEMLRNRLVG--LGFLDIIEILADKMERST  320 (350)
Q Consensus       260 ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~  320 (350)
                      +| ++... |++..|.+.+++.....  +..  .......|+.++-.  ...++.++.-|+.+.+.+
T Consensus       203 ~l-~~L~~-~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  203 IL-CHLAM-GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HH-HHHHT-T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             HH-HHHHc-CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            33 22323 77778888887776542  222  23455666666653  234555666666665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.06  E-value=0.0033  Score=49.63  Aligned_cols=185  Identities=13%  Similarity=0.117  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFS---YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +...+......+...|++++|.+.|+.+...-.. +...   .-.++.++.+.++++.|...+++..+....-....+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            4555555666778899999999999999986332 2222   24567888999999999999999987532211223333


Q ss_pred             HHHHHHc--c---------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          155 IIRKLCK--N---------------EK---VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       155 l~~~~~~--~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      .+.+.+.  .               .+   ...|+..|+.+++.  -|+.             .-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence            3333221  1               12   23556666666665  2333             2234444444333321 


Q ss_pred             CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782          215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD  283 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  283 (350)
                        .-..- -.+.+-|.+.|.+..|..-++.+.+.  +..........++.+|... |..++|..+...+..
T Consensus       174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l-g~~~~a~~~~~~l~~  240 (243)
T PRK10866        174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL-QLNAQADKVAKIIAA  240 (243)
T ss_pred             --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc-CChHHHHHHHHHHhc
Confidence              11111 25678899999999999999999875  2222345566777887766 999999988876643

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.04  E-value=0.00018  Score=53.84  Aligned_cols=102  Identities=21%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             ccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782          147 PNVFTYNCIIRKLCK-----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT  221 (350)
Q Consensus       147 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  221 (350)
                      .+..+|..++..|.+     .|..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+-               |. ..
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NF  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cH
Confidence            455566666655543     24555555555566666666666666666554432 1111               11 11


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK  267 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  267 (350)
                      +..+..-  .-.+-+-|.+++++|...|+-||..++..++..|.+.
T Consensus       108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~  151 (228)
T PF06239_consen  108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK  151 (228)
T ss_pred             HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence            1111111  1234566888899999999999999999998887544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.02  E-value=0.00061  Score=59.79  Aligned_cols=144  Identities=8%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             HhhhcCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHH
Q 018782           35 NAKHEFTPTVKTYSILVRGLGDV-----GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA--------GNIDEAHGM  101 (350)
Q Consensus        35 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~  101 (350)
                      .+....+.+...|...+++....     +..+.|..+|++..+..+. ....|..+..++...        .+...+.+.
T Consensus       328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~  406 (517)
T PRK10153        328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTE  406 (517)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            33455677888888888775432     2377899999998887332 445555544443322        123445555


Q ss_pred             HHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          102 LREMRSI-GAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       102 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      ..+.... ..+.+...+..+.......|++++|...+++....+  |+...|..+...+...|++++|.+.+++....++
T Consensus       407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            5554442 133455677777777777899999999999998865  6888999999999999999999999999888744


Q ss_pred             C
Q 018782          181 N  181 (350)
Q Consensus       181 ~  181 (350)
                      .
T Consensus       485 ~  485 (517)
T PRK10153        485 G  485 (517)
T ss_pred             C
Confidence            3

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.00  E-value=0.00076  Score=50.31  Aligned_cols=63  Identities=16%  Similarity=0.063  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      ..+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+.+..+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455555555555555555555544322111  23444445555555555555555555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.00  E-value=0.0049  Score=50.09  Aligned_cols=129  Identities=11%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcc-CCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-----Ch
Q 018782          151 TYNCIIRKLCKN-EKVEEAYQLLDEMIER---GANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-----DR  219 (350)
Q Consensus       151 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~  219 (350)
                      .+..+...|... |+++.|.+.|.+..+.   .-.+.  ..++..+...+.+.+++++|.++|+++.......     +.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            445555666666 7888888888776543   11111  2345566677788888888888888876643221     11


Q ss_pred             -hHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHhhccCc---HHHHHHHHHHH
Q 018782          220 -HTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYPS--VSTYSVMVHGLCKKKGK---LEEACKYFEMM  281 (350)
Q Consensus       220 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~---~~~a~~~~~~~  281 (350)
                       ..+...+-++...||+..|.+.+++....  ++..+  ......+|.++- . |+   +..++.-|+.+
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~-~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-E-GDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-T-T-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHccc
Confidence             12233344666778888888888887754  22222  234455666643 2 44   44444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.99  E-value=0.0004  Score=58.28  Aligned_cols=93  Identities=13%  Similarity=0.024  Sum_probs=80.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782           50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND  129 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (350)
                      ....+...|++++|++.|++.++.... +...|..+..++...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            355667789999999999999987544 78889999999999999999999999999864 3466788888999999999


Q ss_pred             HhHHHHHHHHHhhCC
Q 018782          130 IHSVFRVLDSMKRYN  144 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~  144 (350)
                      +++|...|++..+..
T Consensus        86 ~~eA~~~~~~al~l~  100 (356)
T PLN03088         86 YQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.99  E-value=0.00066  Score=50.63  Aligned_cols=63  Identities=16%  Similarity=0.032  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      .+..+...+...|++++|...+++.......+.  ...+..+..++.+.|++++|...+++..+.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344444555556666666666666554322211  234555555566666666666666655543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.99  E-value=0.0013  Score=57.89  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=102.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhc--------CCHhHHHHHHH
Q 018782           73 RKCPVDILAHNSLLEAMCKAG-----NIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCEA--------NDIHSVFRVLD  138 (350)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~  138 (350)
                      ...+.+...|...+++.....     +...|..+|++..+.  .|+ ...+..+..++...        .++..+.+...
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345668899998888755432     367999999999986  454 34454444433222        12344555555


Q ss_pred             HHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC
Q 018782          139 SMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP  217 (350)
Q Consensus       139 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  217 (350)
                      +.... ..+.+...|..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....+  |
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P  484 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--P  484 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence            54332 134456778888777777899999999999999885  578889999999999999999999999988854  4


Q ss_pred             ChhHH
Q 018782          218 DRHTY  222 (350)
Q Consensus       218 ~~~~~  222 (350)
                      ...+|
T Consensus       485 ~~pt~  489 (517)
T PRK10153        485 GENTL  489 (517)
T ss_pred             CCchH
Confidence            44444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.98  E-value=0.0003  Score=52.26  Aligned_cols=82  Identities=11%  Similarity=-0.080  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      ....|..++..+...|++++|+..|++.......+  ...++..+..++...|++++|+..+++..... +....++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            35556667777777777777777777776543222  23466777777777777777777777776642 2223344444


Q ss_pred             HHHHH
Q 018782          121 IHAFC  125 (350)
Q Consensus       121 ~~~~~  125 (350)
                      ...+.
T Consensus       113 a~i~~  117 (168)
T CHL00033        113 AVICH  117 (168)
T ss_pred             HHHHH
Confidence            44444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=0.00063  Score=53.42  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=60.0

Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHH
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA  238 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  238 (350)
                      +.+.+++++|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+..+. -...+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence            34556666666666666665433 555555566666666666666666666655432 2345566666666666666666


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782          239 TEVWESMEKRGFYPSVSTYSVMVHG  263 (350)
Q Consensus       239 ~~~~~~~~~~~~~p~~~~~~~ll~~  263 (350)
                      .+.|++..+  +.|+..+|..-+..
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHHHH
Confidence            666666665  35665555554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.0016  Score=53.46  Aligned_cols=259  Identities=16%  Similarity=0.096  Sum_probs=120.7

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      ..+.+..++..|+..+.....-.|.++..|..-+..+...|+++++.--.+.-.+.... ....+...-+++...++..+
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence            34445556666777776666656666666666666666667777666555544432111 11222223333333333333


Q ss_pred             HHHHHHH---------------HHhCC-CCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782           98 AHGMLRE---------------MRSIG-AEPDAFSYSIF-IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC  160 (350)
Q Consensus        98 a~~~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (350)
                      |.+.++.               ..... -+|...++..+ ..++.-.++.++|.++--...+.. ..+....-.-..++.
T Consensus       136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~y  214 (486)
T KOG0550|consen  136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLY  214 (486)
T ss_pred             HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccc
Confidence            3332221               11110 01222233222 234445566666666655555543 112222222223334


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHhcccCHHHHHHHHHHHHhC---CCCCChhHHHH
Q 018782          161 KNEKVEEAYQLLDEMIERGANPDEWS-------------YNAILAYHCDRAEVNMALRLITRMTKE---NVMPDRHTYNM  224 (350)
Q Consensus       161 ~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~  224 (350)
                      -.++.+.+...|.+.++.+  |+...             +..-..-..+.|++..|.+.+.+.+..   +..|+...|..
T Consensus       215 y~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            4566666666666666553  22211             111112234556666666666665543   22334444555


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHhh-ccCcHHHHHHHHHHHHhC
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYS-VMVHGLCK-KKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~-~~~~~~~a~~~~~~~~~~  284 (350)
                      ...+..+.|+..+|+.-.++..+.    |..-.. .+.++-|. ..+++++|.+-++...+.
T Consensus       293 ra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  293 RALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555556666666666666666543    222221 12222111 125666666666665544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.95  E-value=1.3e-05  Score=40.42  Aligned_cols=29  Identities=38%  Similarity=0.774  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRG  249 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  249 (350)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00019  Score=56.21  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=60.1

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782           52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH  131 (350)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  131 (350)
                      .-+.+.+++++|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+... +--..+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence            3345566666666666666665322 56666666666666666666666666665532 112346666666666666666


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHH
Q 018782          132 SVFRVLDSMKRYNLVPNVFTYNCII  156 (350)
Q Consensus       132 ~a~~~~~~~~~~~~~~~~~~~~~l~  156 (350)
                      +|.+.|++.++.  .|+-.+|-.=+
T Consensus       167 ~A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHHHHHH
Confidence            666666666653  35555554433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.93  E-value=0.00021  Score=53.47  Aligned_cols=87  Identities=15%  Similarity=0.295  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 018782           78 DILAHNSLLEAMCK-----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA----------------NDIHSVFRV  136 (350)
Q Consensus        78 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~  136 (350)
                      +..+|..++..+.+     .|..+-....+..|.+.|+.-|..+|+.|+..+=+.                .+.+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44455555554443     244555555555555555555556666555554321                123445555


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782          137 LDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      +++|...|+.||..++..+++.+.+.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            5555555555555555555555555443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.93  E-value=4.8e-05  Score=46.75  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      ...|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566677777777766666666666666777777777777777777666655

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.92  E-value=0.00049  Score=51.11  Aligned_cols=94  Identities=15%  Similarity=0.023  Sum_probs=69.5

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      ...+..+...+...|++++|...|+......+.   ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            445677778888899999999999998653222   34588999999999999999999999998763 33456666666


Q ss_pred             HHHH-------hcCCHHHHHHHHHH
Q 018782           87 EAMC-------KAGNIDEAHGMLRE  104 (350)
Q Consensus        87 ~~~~-------~~~~~~~a~~~~~~  104 (350)
                      ..+.       ..|+++.|+..+.+
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            6666       56666544444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.92  E-value=8.3e-05  Score=45.20  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          264 LCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      +... |++++|.+.|+++++.. |-+...+..+..++...|++++|...++++.+..|..
T Consensus         7 ~~~~-g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    7 LYQQ-GDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHC-THHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHc-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4444 88888888888888776 5677788888888888888888888888877665544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.90  E-value=2.1e-05  Score=39.60  Aligned_cols=29  Identities=45%  Similarity=0.746  Sum_probs=15.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERK   74 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   74 (350)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.87  E-value=0.0022  Score=44.11  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=41.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPD--AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKL  159 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~  159 (350)
                      ..++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++.....  |+    ......+..++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence            3344455555555555555555554332  1233344455555555555555555554431  21    11112222344


Q ss_pred             HccCCHHHHHHHHHHHH
Q 018782          160 CKNEKVEEAYQLLDEMI  176 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~  176 (350)
                      ...|+.++|+..+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            45555555555554433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.82  E-value=0.00012  Score=44.54  Aligned_cols=56  Identities=23%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      ..+...|++++|...|+.+....|.+...+..+..++...|++++|...|+++.+.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44555566666666666655555555566666666666666666666666655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.80  E-value=0.0034  Score=43.15  Aligned_cols=93  Identities=18%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHH
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIFIHAF  124 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~  124 (350)
                      .+..++-..|+.++|+.+|++....|+...  ...+-.+...+...|++++|+.+++........  .+......+..++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            344555566666667777766666655433  234445556666666777777776666653211  0111222233445


Q ss_pred             HhcCCHhHHHHHHHHHh
Q 018782          125 CEANDIHSVFRVLDSMK  141 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~  141 (350)
                      ...|+.++|+..+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55666666666665443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.80  E-value=0.00014  Score=44.88  Aligned_cols=63  Identities=21%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRS  107 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~  107 (350)
                      +..|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            344445555555555555555555555544222 4444555555555555 45555555554443

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.79  E-value=0.0001  Score=45.24  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      |++++|+++|+++.... |.+...+..++.+|.+.|++++|..+++++....+..
T Consensus         5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            89999999999998876 6688888899999999999999999999998877664

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.77  E-value=0.00019  Score=44.21  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHhhccC
Q 018782          254 VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLG-FLDIIEILADKMERST  320 (350)
Q Consensus       254 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~  320 (350)
                      ...|..+-..+... |++++|+..|++.++.+ +.+...+..+..++...| ++++|.+.+++..+.+
T Consensus         3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            34455555555544 67777777777776665 556666777777777776 5777777776665543

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.76  E-value=0.011  Score=45.49  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=23.4

Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCCHhH
Q 018782          190 ILAYHCDRAEVNMALRLITRMTKENVMPDR----HTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~  237 (350)
                      +...|.+.|.+..|..-++.+++.-  |++    .....++.++.+.|..+.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHH
Confidence            3455566666666666666665541  222    233455556666665553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.0035  Score=48.41  Aligned_cols=56  Identities=7%  Similarity=-0.009  Sum_probs=27.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM  140 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  140 (350)
                      ++.++...+.+.-....+...++...+.++.....|++...+.||.+.|..+|++.
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34444444445555555555554443444444444555555555555555555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0043  Score=49.07  Aligned_cols=113  Identities=9%  Similarity=0.046  Sum_probs=77.8

Q ss_pred             HHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHhC
Q 018782          207 ITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK--GKLEEACKYFEMMVDE  284 (350)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~  284 (350)
                      ++.-...+ +-|...|-.|..+|...|+++.|..-|....+.. .++...+..+..++....  ....++..+|+++...
T Consensus       145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            33333433 3467788888888888888888888888877651 234444444444443332  3466778888888877


Q ss_pred             CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782          285 GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      + +.|......|...+...|++.+|...|+.|.+..+.
T Consensus       223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            6 677788888888888888888888888888776443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.68  E-value=0.014  Score=44.78  Aligned_cols=170  Identities=12%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRYNL--VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR  197 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  197 (350)
                      ....+...|++.+|...|+.+.....  +-.....-.++.++.+.|+++.|...++.+.+..+.....-+...+.+.+..
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            34444555666666666666654310  1112334445566666666666666666666553322222222222222211


Q ss_pred             -------------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782          198 -------------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL  264 (350)
Q Consensus       198 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~  264 (350)
                                   +....|...               +..++.-|-...-..+|...+..+.+.   .-...+ .+..-|
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y  151 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFY  151 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHH
T ss_pred             HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHH
Confidence                         112223333               334444444445555555555555432   011111 233334


Q ss_pred             hhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHH
Q 018782          265 CKKKGKLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLVGLGFLDIIE  310 (350)
Q Consensus       265 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~  310 (350)
                      .+. |.+..|..-++.+++.- |-+   ......++.++.+.|..+.+.
T Consensus       152 ~~~-~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  152 YKR-GKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HCT-T-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHc-ccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            544 88888888888888763 222   345677788888888877443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0057  Score=48.43  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=69.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHhhCCCCccHHHH
Q 018782           76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN---DIHSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      |-|...|-.|...|...|+.+.|...|.+..+.. +++...+..+..++....   ...++..+|+++.... +.++.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            3377777778888888888888888887777652 345555555555544322   3556777777777654 3466666


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          153 NCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      ..+...+...|++.+|...|+.|.+..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            667777777888888888888877763

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.65  E-value=0.024  Score=46.59  Aligned_cols=111  Identities=24%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782          186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC  265 (350)
Q Consensus       186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  265 (350)
                      +.+.-+.-+...|+...|.++-.+.   ++ |+...|...+.+++..++|++-.++...  +    -++..|...+..+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence            4455566677788888888776554   33 7888899999999999999988876543  1    13466788888776


Q ss_pred             hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      .. |+..+|..++.+     +++     ..-+..|.+.|++.+|.+..-+..
T Consensus       249 ~~-~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  249 KY-GNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HC-CCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence            65 889999988887     222     344567788888888877655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.63  E-value=0.0021  Score=51.14  Aligned_cols=97  Identities=12%  Similarity=0.019  Sum_probs=50.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHH
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPDAFSYSIFIH  122 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~  122 (350)
                      |...+..+.+.|++++|...|+.+.+..+...  ..++..+..+|...|++++|...|+.+.+.-.  +.....+..+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            44444444445666666666666655422211  24555566666666666666666666654311  111223334445


Q ss_pred             HHHhcCCHhHHHHHHHHHhhC
Q 018782          123 AFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ++...|+.++|..+|+.+.+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            555666666666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.63  E-value=0.028  Score=46.82  Aligned_cols=172  Identities=12%  Similarity=0.112  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERK---CPVDILAHNSLLEAMCK---AGNIDEAHGMLREMRSIGAEPDA  114 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~  114 (350)
                      -.++.+...++-.|....+++...++.+.+....   +.-....-.....++.+   .|+.++|++++..+......+++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            4556666677778999999999999999987652   22233333345556667   88999999999886655567788


Q ss_pred             hhHHHHHHHHHh---------cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH----HHHHHHH---HH-HHH
Q 018782          115 FSYSIFIHAFCE---------ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV----EEAYQLL---DE-MIE  177 (350)
Q Consensus       115 ~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~  177 (350)
                      .++..+...|-.         ....++|+..|.+.-+..  |+.+.--.++..+.-.|..    .+..++-   .. +.+
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~  295 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR  295 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence            888888777642         224778888888775532  5544333333333333332    1222222   11 112


Q ss_pred             cC---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          178 RG---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       178 ~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      +|   ...+-+.+..++.++.-.|+.++|.+..+.+.+..
T Consensus       296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            22   33466778888999999999999999999998863

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.013  Score=45.41  Aligned_cols=133  Identities=14%  Similarity=0.170  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH---
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI---  121 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---  121 (350)
                      .+.+.++.++...|.+.-...++.+.++...+.++.....|++...+.|+.+.|...|++..+..-..|..+++.++   
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            34567788888899999999999999998878889999999999999999999999999887654344444444443   


Q ss_pred             --HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          122 --HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       122 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                        ..|.-.+++..|...+.++.... +.++...|.-.-+..-.|+..+|.+.++.+.+.
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              23445567777777777776654 335555555445555567888888888888776

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.05  Score=48.61  Aligned_cols=304  Identities=14%  Similarity=0.098  Sum_probs=165.6

Q ss_pred             CCCCCCCcCHhhHHH-----HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhc
Q 018782            1 MVEFGIKPSIYDLDQ-----LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE--LSEARKLFDEMLER   73 (350)
Q Consensus         1 m~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~   73 (350)
                      |.+-|++.+..-|..     +++-+...+.+..|+++-..+.........+|......+.+..+  -+++++.+++=.+.
T Consensus       423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~  502 (829)
T KOG2280|consen  423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA  502 (829)
T ss_pred             ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence            457788888888865     56677788999999999988865333336788888888876632  22333333332222


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-----
Q 018782           74 KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE----PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN-----  144 (350)
Q Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----  144 (350)
                      ... ....|..+.+-....|+.+.|..+++.=...+..    .+..-+...+.-+.+.||.+....++-.+.+.-     
T Consensus       503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l  581 (829)
T KOG2280|consen  503 KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL  581 (829)
T ss_pred             cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            122 4456777888788899999998887653322211    122234555666777788777777666554321     


Q ss_pred             ------CCccHHHHHHHHH---------HHHccCCHHHHHHHH-HHHHH----cCCCCCHHHHHHHHHHHhcccCHH---
Q 018782          145 ------LVPNVFTYNCIIR---------KLCKNEKVEEAYQLL-DEMIE----RGANPDEWSYNAILAYHCDRAEVN---  201 (350)
Q Consensus       145 ------~~~~~~~~~~l~~---------~~~~~g~~~~a~~~~-~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~---  201 (350)
                            .+.....|.-+++         .|-...+...+-.+. +....    .+..|+   ......++.+.....   
T Consensus       582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA  658 (829)
T ss_pred             HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence                  1111122222221         111111111111111 11000    111222   222233333332211   


Q ss_pred             -------HHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782          202 -------MALRLITRMTKE-NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE  273 (350)
Q Consensus       202 -------~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~  273 (350)
                             +-+.+.+.+... +.....-+.+--+.-+...|+-.+|.++-.+++    .||-..|..-+.++... +++++
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~-~kwee  733 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI-KKWEE  733 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh-hhHHH
Confidence                   111222222211 222333445555666677788888888777765    46777777777777665 77766


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      ..++-+...      ++.-|..++.+|.+.|+.++|.+++.+....
T Consensus       734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l  773 (829)
T KOG2280|consen  734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL  773 (829)
T ss_pred             HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence            655544332      2445666777777788888777777766543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.52  E-value=0.0033  Score=50.03  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV----STYSVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEM  295 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~  295 (350)
                      |...+..+.+.|++++|...|+.+.+.  .|+.    ..+..+...|... |++++|...|+.+....  -+..+..+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            444333334556677777667666654  2332    2333344444444 67777777777766442  1223445555


Q ss_pred             HHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          296 LRNRLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       296 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      ++..+...|+.++|.++++++.+..|.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            56666667777777777776666544443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.47  E-value=0.0021  Score=46.21  Aligned_cols=95  Identities=8%  Similarity=-0.065  Sum_probs=75.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE  126 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (350)
                      ......-+...|++++|..+|+-+.-.++- +..-|..|..++-..+++++|+..|......+. -|+..+.....++..
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~  117 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence            444555566789999999999988876544 677788888889999999999999988876543 455556678889999


Q ss_pred             cCCHhHHHHHHHHHhhC
Q 018782          127 ANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~  143 (350)
                      .|+.+.|...|+.....
T Consensus       118 l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        118 MRKAAKARQCFELVNER  134 (165)
T ss_pred             hCCHHHHHHHHHHHHhC
Confidence            99999999999988874

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.47  E-value=0.047  Score=45.48  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhCC---CCccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYN---LVPNVFTYNCIIRKLCK---NEKVEEAYQLLDEMIERGANPDEWSYN  188 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~  188 (350)
                      .+...++-+|....+++..+++++.+....   +..+...-.....++.+   .|+.++|.+++..+......+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344566667999999999999999997752   12233333345556666   899999999999976666677888888


Q ss_pred             HHHHHHhc---------ccCHHHHHHHHHHHHh
Q 018782          189 AILAYHCD---------RAEVNMALRLITRMTK  212 (350)
Q Consensus       189 ~ll~~~~~---------~~~~~~a~~~~~~~~~  212 (350)
                      .+.+.|-.         ....++|...|.+.-+
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            87776642         1235566666666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.46  E-value=0.0075  Score=43.55  Aligned_cols=56  Identities=23%  Similarity=0.293  Sum_probs=24.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      .++..+...|++++|..+++.+....+. +...|..+|.++...|+...|.+.|+.+
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3334444444444444444444444322 4444444444444444444444444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.45  E-value=0.0064  Score=50.18  Aligned_cols=133  Identities=12%  Similarity=0.033  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHh----CCCC-CChhHHHHHHHHHHHcCCHhHHHHHHHHHHh----cCCC-CCH
Q 018782          185 WSYNAILAYHCDRAEVNMALRLITRMTK----ENVM-PDRHTYNMVLKLLVRVGRFDRATEVWESMEK----RGFY-PSV  254 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~  254 (350)
                      ..|..|...|.-.|+++.|+...+.-..    .|-+ .....+..+..++.-.|+++.|.+.|+....    .|-+ ...
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            3566777777778889988876655322    1211 1234677788888889999999998876542    2211 122


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMV----DE-GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .+..++-..|... ..++.|+.++.+-.    +. +..-....+.+|..+|...|..++|+.+.+.-.+
T Consensus       276 QscYSLgNtytll-~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLL-KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3344555566544 68888888887632    21 1233567888999999999999999988776543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.41  E-value=0.053  Score=44.72  Aligned_cols=283  Identities=14%  Similarity=0.129  Sum_probs=165.1

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHH
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGL--GDVGELSEARKLFDEMLERKCPVDIL--AHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~   97 (350)
                      -.|+-..|.++-.+..+....+......++.+-  .-.|+++.|.+-|+.|...   |...  -...|.-...+.|..+.
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence            356667777776665544444444444444433  3468888888888888763   1211  12223333446778888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHH--HHHHHHHH---HccCCHHHHHHH
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFT--YNCIIRKL---CKNEKVEEAYQL  171 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~  171 (350)
                      |..+-+..-..- +.-...+...+...+..|+|+.|+++++.-.... +.++..-  -..|+.+-   .-..+...|...
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            887777776542 2234567778888888888888888887664422 2333221  11222111   112345555555


Q ss_pred             HHHHHHcCCCCCHH-HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-C
Q 018782          172 LDEMIERGANPDEW-SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-G  249 (350)
Q Consensus       172 ~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  249 (350)
                      -.+..+.  .||.. .-.....++.+.|+..++-.+++.+-+..+.|+  .+    ..|.+...-+.+..-++..... .
T Consensus       252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~s  323 (531)
T COG3898         252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLES  323 (531)
T ss_pred             HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHh
Confidence            5554443  44432 233345678888999999999999888755554  22    2333333333444444443321 2


Q ss_pred             CCCCHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHhhcc
Q 018782          250 FYPSVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG-LGFLDIIEILADKMERS  319 (350)
Q Consensus       250 ~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~  319 (350)
                      ++||.. .-..+..+-. ..|++..|..--+.....  .|....|..+.+.-.. .|+-.++..++.+..+.
T Consensus       324 lk~nnaes~~~va~aAl-da~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         324 LKPNNAESSLAVAEAAL-DAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cCccchHHHHHHHHHHH-hccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            345543 3344444433 348888888777766554  5778888777776554 48999999888887653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.41  E-value=0.0013  Score=47.50  Aligned_cols=73  Identities=26%  Similarity=0.364  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHhhHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR-----SIGAEPDAFSYS  118 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~  118 (350)
                      .+...++..+...|+++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+.+.     +.|+.|+..+-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            466777788888999999999999988874 4488899999999999999999999998875     358888876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.41  E-value=0.0011  Score=41.20  Aligned_cols=56  Identities=14%  Similarity=0.011  Sum_probs=40.6

Q ss_pred             CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      +++++|.++++.+...+ |.++..+.....++.+.|++++|.+.+++..+..+..+.
T Consensus         9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    9 EDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             CCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            77777777777777775 566777777777777777777777777777766665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.059  Score=47.90  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=34.1

Q ss_pred             CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782          183 DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME  246 (350)
Q Consensus       183 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  246 (350)
                      +....-.+...+.+.|.-++|.+.+-+-   +. |.     ..+..|...++|.+|.++-+...
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-pk-----aAv~tCv~LnQW~~avelaq~~~  905 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-PK-----AAVHTCVELNQWGEAVELAQRFQ  905 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence            4455666667777777777777665332   21 22     34566777777877777766543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.35  E-value=0.071  Score=44.89  Aligned_cols=83  Identities=12%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             HhHHHHHHHHHHhcCCCCCHH----HHHHHHHH-HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 018782          235 FDRATEVWESMEKRGFYPSVS----TYSVMVHG-LCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDII  309 (350)
Q Consensus       235 ~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  309 (350)
                      +..-..+-+-+.+.|+.|-..    .-|.+-.+ |....|++.++...-..+.+  +.|++.+|+.++-+.....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            333334444444556665432    23333222 22234888888887777766  468999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 018782          310 EILADKMERS  319 (350)
Q Consensus       310 ~~~~~~~~~~  319 (350)
                      ..++..++..
T Consensus       515 ~~~l~~LP~n  524 (549)
T PF07079_consen  515 WEYLQKLPPN  524 (549)
T ss_pred             HHHHHhCCCc
Confidence            9999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.30  E-value=0.0022  Score=39.85  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=28.6

Q ss_pred             HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      .+.+.++++.|.++++.+..-.|.++..+.....++...|++++|.+.|++..+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555554444445555555555555555555555555555543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.30  E-value=0.019  Score=41.41  Aligned_cols=91  Identities=12%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782          226 LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF  305 (350)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  305 (350)
                      ..-+...|++++|..+|+-+.-.+.  ...-|..=+.+++...+++++|+..|......+ +.|+..+.....++...|+
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence            3445567777777777777765422  222333333344444577777777777766554 3455556667777777777


Q ss_pred             hhHHHHHHHHhhcc
Q 018782          306 LDIIEILADKMERS  319 (350)
Q Consensus       306 ~~~a~~~~~~~~~~  319 (350)
                      .+.|+..|+.....
T Consensus       121 ~~~A~~~f~~a~~~  134 (165)
T PRK15331        121 AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHhC
Confidence            77777777776653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.22  E-value=0.09  Score=43.45  Aligned_cols=267  Identities=18%  Similarity=0.190  Sum_probs=171.9

Q ss_pred             cCHhhHHHHHHHH--HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            8 PSIYDLDQLLHAL--CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         8 p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      .|..-+-.++.+-  .-.|+++.|.+-|+.|...-....--...|.-..-+.|..+.|.++-++.-..-.. -...+...
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~At  194 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARAT  194 (531)
T ss_pred             ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHH
Confidence            3444455555433  45899999999999997521111112233333345679999999998887766333 56778889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHH---hcCCHhHHHHHHHHHhhCCCCccHHH-HHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIG-AEPDAF--SYSIFIHAFC---EANDIHSVFRVLDSMKRYNLVPNVFT-YNCIIRK  158 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~  158 (350)
                      +...+..|+|+.|+++++.-+... +.++..  .-..|+.+-.   -..+...|...-.+..+  +.|+..- -.....+
T Consensus       195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAra  272 (531)
T COG3898         195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARA  272 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHH
Confidence            999999999999999999877543 344432  1222332211   12345556555555544  3455332 2234578


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHHcCCHh
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMP-DRHTYNMVLKLLVRVGRFD  236 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~  236 (350)
                      +.+.|+..++-.+++.+-+..+.|+.  +.  +..+.+.|+..  ..-++..... ..+| +......+..+-...|++.
T Consensus       273 lf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~  346 (531)
T COG3898         273 LFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS  346 (531)
T ss_pred             HHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence            89999999999999999998655543  32  22344556533  3333332211 1233 4566667788888999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      .|..--+.....  .|....|..|...-....|+-.++..++-+....-
T Consensus       347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            999888877764  67777777666554445599999999999887653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.19  E-value=0.05  Score=39.99  Aligned_cols=127  Identities=11%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 018782          112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAI  190 (350)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l  190 (350)
                      |+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++-+.+.. -++.+...+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            4444444555555666666666666665554333344455555555555556666666666555543210 011223334


Q ss_pred             HHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782          191 LAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE  240 (350)
Q Consensus       191 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  240 (350)
                      .+.+...|.+..|+..|+.....  -|+...-......+.+.|+.+++..
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555555555555555553  2333333333334444554444433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.18  E-value=0.11  Score=43.73  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      -|-|..+|..|++-+..+|..++..+.++++...+|--+.+|...+..-...+++..++.+|.+-+..
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            45678889999999999999999999999999888888888988888888888888888888876654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.13  E-value=0.06  Score=39.60  Aligned_cols=133  Identities=14%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHH
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYN  153 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~  153 (350)
                      ..|+......|..+..+.|+..+|...|++....-+--|....-.+..+....++...+...++++-+... .-+..+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            35677777788999999999999999999998765566777788888889999999999999999866431 11233445


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITR  209 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  209 (350)
                      .+.+.+...|.+..|+.-|+.....-  |+...-......+.+.|+.+++..-+..
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            66788899999999999999988763  4443333333444556655555443333

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.08  E-value=0.017  Score=40.16  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=22.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 018782          250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMV-DEGIPPYSSTVEMLRN  298 (350)
Q Consensus       250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~  298 (350)
                      ..|+..+..+++.+|+.. |++..|+++++... ..+++.+..+|..|++
T Consensus        48 l~Pt~~lL~AIv~sf~~n-~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYN-GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            344555555555554433 45555555554443 2234444444444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.05  E-value=0.019  Score=39.91  Aligned_cols=83  Identities=8%  Similarity=0.006  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHhcccCHHHHHHHHHHHHh---------------CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          183 DEWSYNAILAYHCDRAEVNMALRLITRMTK---------------ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       183 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      |..++..++.++++.|+.+....+++..-.               ....|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            467888999999999999999998877521               12457888999999999999999999999999875


Q ss_pred             -cCCCCCHHHHHHHHHHHh
Q 018782          248 -RGFYPSVSTYSVMVHGLC  265 (350)
Q Consensus       248 -~~~~p~~~~~~~ll~~~~  265 (350)
                       .++..+...|..|+.-..
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence             467777788888876533

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.03  E-value=0.0023  Score=40.40  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=10.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEM   70 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~   70 (350)
                      +++.+..+|...|++++|+..|++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~a   31 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKA   31 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444444444444444443

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.98  E-value=0.18  Score=42.62  Aligned_cols=143  Identities=11%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS-YNAILAY  193 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~  193 (350)
                      .|...+..-.+...++.|..+|-++.+.| +.+++..+++++..++ .|++.-|..+|+--...-  ||... ....+..
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~f  475 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLF  475 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence            45556666666677777788887777776 4566777777776555 456777777777655442  23333 3345555


Q ss_pred             HhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782          194 HCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL  264 (350)
Q Consensus       194 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~  264 (350)
                      +.+.++-..|..+|+..+.. +..+  ...|..++.--..-|++..+..+=+.+.+.  .|...+.....+.|
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            66777777777777755443 1112  356777777777777777777776666653  45444444444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.98  E-value=0.0025  Score=40.30  Aligned_cols=63  Identities=17%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhh---cCC---C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH---EFT---P-TVKTYSILVRGLGDVGELSEARKLFDEMLE   72 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   72 (350)
                      ..+|+.+...+...|++++|+..|++...   ..+   + ...++..+..++...|++++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34678888999999999999999999753   122   2 256788888999999999999999988654

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.94  E-value=0.026  Score=46.79  Aligned_cols=271  Identities=12%  Similarity=0.082  Sum_probs=159.2

Q ss_pred             hhHHHHH--HHHHccCChHHHHHHHHHhhhcCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHH--Hhc--CCC-CCH
Q 018782           11 YDLDQLL--HALCKRKHVKVAHQFFDNAKHEFT----PTVKTYSILVRGLGDVGELSEARKLFDEM--LER--KCP-VDI   79 (350)
Q Consensus        11 ~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~   79 (350)
                      .++...+  .-+|+.|+......+|+...+...    .-..+|..|..+|.-.+++++|+++-..=  ..+  |-+ -..
T Consensus        16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence            3444333  467899999999999999876323    33456777888888888999998765431  111  100 011


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCC-CCHhhHHHHHHHHHhcCC--------------------HhHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLRE----MRSIGAE-PDAFSYSIFIHAFCEAND--------------------IHSVF  134 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~  134 (350)
                      .+-..|...+--.|.+++|+-.-.+    ..+.|-. .....+..+...|...|.                    ++.|.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            2222344444455666666543222    2222211 122344456666655442                    33444


Q ss_pred             HHHHHHh----hCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHhcccCHHHHH
Q 018782          135 RVLDSMK----RYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE----RGA-NPDEWSYNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       135 ~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~  204 (350)
                      ++|..-.    +.|- -.-...|..|...|.-.|+++.|+...+.-..    .|- ......+..+..++.-.|+++.|.
T Consensus       176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~  255 (639)
T KOG1130|consen  176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI  255 (639)
T ss_pred             HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence            5544321    1110 01234566667777778899999877654322    221 123456777888888899999999


Q ss_pred             HHHHHHHhC----CC-CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHhhccCcHHHH
Q 018782          205 RLITRMTKE----NV-MPDRHTYNMVLKLLVRVGRFDRATEVWESMEK----R-GFYPSVSTYSVMVHGLCKKKGKLEEA  274 (350)
Q Consensus       205 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~~~~~~~ll~~~~~~~~~~~~a  274 (350)
                      +.++.....    |- .....+..+|...|.-..++++|+.++.+-..    . ...-....++++-.+|... |..++|
T Consensus       256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-g~h~kA  334 (639)
T KOG1130|consen  256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-GEHRKA  334 (639)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-hhHHHH
Confidence            988775332    21 12334556778888888889999888765331    1 1123456778888887766 888888


Q ss_pred             HHHHHHHH
Q 018782          275 CKYFEMMV  282 (350)
Q Consensus       275 ~~~~~~~~  282 (350)
                      +.+...-.
T Consensus       335 l~fae~hl  342 (639)
T KOG1130|consen  335 LYFAELHL  342 (639)
T ss_pred             HHHHHHHH
Confidence            88777654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.91  E-value=0.041  Score=46.61  Aligned_cols=68  Identities=18%  Similarity=-0.024  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI---LAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .|.+...++.+..+|...|++++|+..|++.++.+.. +.   .+|..+..+|...|+.++|+..+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3566788888999999999999999999988876433 22   35888888999999999999999988875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.91  E-value=0.2  Score=43.97  Aligned_cols=177  Identities=12%  Similarity=0.053  Sum_probs=106.6

Q ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCCHHHH
Q 018782           29 AHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI------LAHNSLLEAMCK----AGNIDEA   98 (350)
Q Consensus        29 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a   98 (350)
                      ..-+|.-+..-.||.   +..++....=.|+-+.+++.+.+..+.+--..+      -.|+..+..++.    ....+.|
T Consensus       176 G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a  252 (468)
T PF10300_consen  176 GFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA  252 (468)
T ss_pred             HHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence            345555555555554   456677777778888888888776553211121      123333333332    4567888


Q ss_pred             HHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHhHHHHHHHHHhhCC--C-CccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782           99 HGMLREMRSIGAEPDAFSYS-IFIHAFCEANDIHSVFRVLDSMKRYN--L-VPNVFTYNCIIRKLCKNEKVEEAYQLLDE  174 (350)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  174 (350)
                      .+++..+.+.  -|+...|. .-.+.+...|++++|++.|+......  . ......+--+.-.+.-.+++++|.+.|..
T Consensus       253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            8888888875  35554443 33456677888888888888654311  1 11233444555667778888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHH-hcccCH-------HHHHHHHHHHH
Q 018782          175 MIERGANPDEWSYNAILAYH-CDRAEV-------NMALRLITRMT  211 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~  211 (350)
                      +.+.+.. +..+|.-+..+| ...++.       ++|.++|.++.
T Consensus       331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            8876432 444444444333 345555       77888887754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.87  E-value=0.063  Score=45.58  Aligned_cols=68  Identities=18%  Similarity=-0.014  Sum_probs=59.6

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      -+.+...++.+..+|...|++++|+..|++.....|.+.   .+|..+..+|...|+.++|+..+++.++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677889999999999999999999999877656555   45999999999999999999999999886

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.83  E-value=0.076  Score=45.92  Aligned_cols=153  Identities=15%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             HccCChHHHHHHHH--HhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782           21 CKRKHVKVAHQFFD--NAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA   98 (350)
Q Consensus        21 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   98 (350)
                      .-.++++.+.++.+  .+...+|  ....+.+++.+-+.|-.+.|+++.++-..            -.....+.|+++.|
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA  337 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence            33555555555443  1222222  33355555566666666666655433211            12334455565555


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782           99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      .++.+..      .+...|..|.....+.|+++-|...|.+..+         |..|+-.|.-.|+.+...++.+.....
T Consensus       338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            5443332      2445566666666666666666665554432         234444455555555555555544443


Q ss_pred             CCCCCHHHHHHHHHHHhcccCHHHHHHHHH
Q 018782          179 GANPDEWSYNAILAYHCDRAEVNMALRLIT  208 (350)
Q Consensus       179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  208 (350)
                      |      -++....++.-.|+.+++.+++.
T Consensus       403 ~------~~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  403 G------DINIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             c------CHHHHHHHHHHcCCHHHHHHHHH
Confidence            2      13333333444455555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.24  Score=41.33  Aligned_cols=88  Identities=10%  Similarity=-0.004  Sum_probs=41.7

Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHH
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS---YNAILAYH  194 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~  194 (350)
                      ..-..+.|++..|...|.+.+..   +..|+...|.....+..+.|+.++|+.-.+.....    |..-   +..-..++
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~  331 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH  331 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence            33444555555555555555432   22334444555555555555555555555555443    2221   11112233


Q ss_pred             hcccCHHHHHHHHHHHHh
Q 018782          195 CDRAEVNMALRLITRMTK  212 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~  212 (350)
                      ...++|++|.+-++...+
T Consensus       332 l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  332 LALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            345555555555555444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.054  Score=44.89  Aligned_cols=138  Identities=13%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      ..+.+.|++..|...|+++..-...            .+.-+.++..... .       .-..+++.+..++.+.+++..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~------------~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~~~~  275 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEY------------RRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKEYKE  275 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhc------------cccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhhHHH
Confidence            4677888899888888886431110            0000001111110 0       122344555556666666666


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH-HHHHHHHHHH
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE-EAYQLLDEMI  176 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~  176 (350)
                      |++.-...+..+ ++|.....--..++...|+++.|...|+++.+.. |.|..+-+.++.+--+..... ...++|..|.
T Consensus       276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666553 3445455555556666666666666666665542 223333333333333333332 2345555554


Q ss_pred             H
Q 018782          177 E  177 (350)
Q Consensus       177 ~  177 (350)
                      .
T Consensus       354 ~  354 (397)
T KOG0543|consen  354 A  354 (397)
T ss_pred             h
Confidence            3

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.74  E-value=0.25  Score=40.76  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 018782          151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLV  230 (350)
Q Consensus       151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  230 (350)
                      +.+..+.-+...|+...|..+-.+..    .|+...|-..+.+++..++|++-.++...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            44555667778888888877765552    46888999999999999999987776432      123477889999999


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 018782          231 RVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM  280 (350)
Q Consensus       231 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~  280 (350)
                      +.|+..+|..+...+      |+    ..-+..|... |++.+|.+.--+
T Consensus       249 ~~~~~~eA~~yI~k~------~~----~~rv~~y~~~-~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI------PD----EERVEMYLKC-GDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC------Ch----HHHHHHHHHC-CCHHHHHHHHHH
Confidence            999999999888772      22    2333344433 888888776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.24  Score=39.54  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782           50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND  129 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (350)
                      -.......|++.+|..+|+........ +...-..++.++...|+.+.|..++..+...--.........-+..+.+...
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            344556778888888888887766433 4566667778888888888888888877543222222222334555555566


Q ss_pred             HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccc
Q 018782          130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GANPDEWSYNAILAYHCDRA  198 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~  198 (350)
                      ..+...+-.+.-..  +-|...-..+...+...|+.+.|.+.+-.+.++  +.. |...-..++..+.-.|
T Consensus       219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            55555555555443  236666667777888888888888777666654  222 4555666666665555

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.12  Score=41.88  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=84.0

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER---KCPVDILAHNSLLEAMCKAGNIDEA   98 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a   98 (350)
                      .+|++.+|-..++++.+..|.+.-.+..-=+++.-.|+.......++++...   ++|..........-++...|-+++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            3456666666666666666666666666666666677777666666666543   2222233333344455566777777


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782           99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE  174 (350)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  174 (350)
                      ++.-++..+.+ +-|...-.++...+-..|++.++.++..+-...   +--.-.+-|-...-.+...+.++.|+++|+.
T Consensus       195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            77777766653 334445555556666666666666665443221   0000111122222334455677777777764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.63  E-value=0.041  Score=47.49  Aligned_cols=133  Identities=18%  Similarity=0.169  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      ...+.++..+.+.|-.+.|+++-..-.           .-.....+.|+++.|.++.++.      .+...|..|.....
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL  358 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL  358 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence            347788888888999998888744322           3355667899999998876543      37789999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQ  170 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  170 (350)
                      ..|+++.|.+.|.+..+         |..|+-.|.-.|+.+...++.+.....|      -++....++.-.|+.++..+
T Consensus       359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~  423 (443)
T PF04053_consen  359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD  423 (443)
T ss_dssp             HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred             HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence            99999999999998743         6678888888999999988888887766      24444555666788888887


Q ss_pred             HHHHH
Q 018782          171 LLDEM  175 (350)
Q Consensus       171 ~~~~~  175 (350)
                      ++.+.
T Consensus       424 lL~~~  428 (443)
T PF04053_consen  424 LLIET  428 (443)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            77553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.60  E-value=0.46  Score=42.25  Aligned_cols=95  Identities=15%  Similarity=0.058  Sum_probs=49.1

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHH---------hhhcCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhcC
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDN---------AKHEFTPTVKTYSILVRGLGDVGE--LSEARKLFDEMLERK   74 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~   74 (350)
                      +.|.+..+.+-+..+...|.+++|.++---         +.. ...++-.++..=.+|.+..+  +-+...-+++++++|
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~-~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg  630 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAM-EALEALDFETARKAYIRVRDLRYLELISELEERKKRG  630 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccceecchHHHHHH-HHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            344455555666667778888877654211         100 01122223333445544433  223334445566666


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLRE  104 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  104 (350)
                      -.|+...   +...++-.|.+.+|-++|.+
T Consensus       631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  631 ETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             CCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            6566543   44556667777777777654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.59  E-value=0.44  Score=41.90  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=83.7

Q ss_pred             HhcCCHhHHHHHHHHHhhCC-CCcc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 018782          125 CEANDIHSVFRVLDSMKRYN-LVPN-----VFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAI-LAY  193 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~  193 (350)
                      .-.||-+.+++.+....+.+ +...     .-.|...+..++.    ....+.|.+++..+.+.  -|+...|... .+.
T Consensus       199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~  276 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRL  276 (468)
T ss_pred             CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            34567777777766654432 2111     1123333333332    34556777777777765  4455444433 234


Q ss_pred             HhcccCHHHHHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          194 HCDRAEVNMALRLITRMTKEN---VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       194 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      +...|+++.|.+.|+......   .+.....+--+..++.-.++|++|.+.|..+.+.. ..+...|..+..++....|+
T Consensus       277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc
Confidence            456677777777777654311   11122334445566667777777777777777642 22344555555444444466


Q ss_pred             H-------HHHHHHHHHH
Q 018782          271 L-------EEACKYFEMM  281 (350)
Q Consensus       271 ~-------~~a~~~~~~~  281 (350)
                      .       ++|.++|.+.
T Consensus       356 ~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  356 EEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             chhhhhhHHHHHHHHHHH
Confidence            6       6777777665

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.59  E-value=0.25  Score=38.62  Aligned_cols=181  Identities=12%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD---  196 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---  196 (350)
                      ..-.+.|++++|.+.|+.+....  -+-...+--.++.++.+.++++.|....++..+..+......|...|.+.+.   
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~  121 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ  121 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence            33456688888888888886542  1123445555667777888888888888888776544444445555554441   


Q ss_pred             ----ccCHH---HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC
Q 018782          197 ----RAEVN---MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG  269 (350)
Q Consensus       197 ----~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  269 (350)
                          ..|..   .|..-|++++.. . ||+             .-...|..-...+.+.     ..-+...|.-|....|
T Consensus       122 i~~~~rDq~~~~~A~~~f~~~i~r-y-PnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~  181 (254)
T COG4105         122 IDDVTRDQSAARAAFAAFKELVQR-Y-PNS-------------RYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRG  181 (254)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHH-C-CCC-------------cchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhc
Confidence                11222   233333333332 1 221             1112222222222211     1112233333333448


Q ss_pred             cHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          270 KLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      .+..|..-+++|++. .+-.   ...+..+..+|...|-.++|.+.-+-+...-+.+
T Consensus       182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            888888888888876 2332   3456667788888888888888776665544433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.56  E-value=0.32  Score=39.52  Aligned_cols=166  Identities=9%  Similarity=0.018  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782          150 FTYNCIIRKLCKNEKVE---EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL  226 (350)
Q Consensus       150 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  226 (350)
                      .+...++.+|...+..+   +|.++++.+...... .+..+..-+..+.+.++.+.+.+.+..|...- ......+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            45666777777776654   455666666544322 34555556666667788888888888888752 22334455555


Q ss_pred             HHHHH--cCCHhHHHHHHHHHHhcCCCCCHH-HHH-HHHHHHhh--cc------CcHHHHHHHHHHHHh-CCCCCCHHHH
Q 018782          227 KLLVR--VGRFDRATEVWESMEKRGFYPSVS-TYS-VMVHGLCK--KK------GKLEEACKYFEMMVD-EGIPPYSSTV  293 (350)
Q Consensus       227 ~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~ll~~~~~--~~------~~~~~a~~~~~~~~~-~~~~~~~~~~  293 (350)
                      ..+..  ......|...+..+....+.|... ... .++.....  ..      +..+...++++.... .+.+.+..+.
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            54422  123445666666665444444443 111 11111111  10      114444445553332 2233444433


Q ss_pred             HHH-------HHHHHcCCChhHHHHHHHHhh
Q 018782          294 EML-------RNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       294 ~~l-------~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      ..+       +..+.+.++++.|.++++-..
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            222       345678899999999988543

It is also involved in sporulation [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.15  Score=42.44  Aligned_cols=96  Identities=7%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYN-AILAY  193 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~  193 (350)
                      .++..+..++.+.+++..|+......+..+ ++|.-..---..++...|+++.|+..|+++.+.  .|+..... .++..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            467788999999999999999999998876 667877778889999999999999999999987  44444444 44443


Q ss_pred             HhcccC-HHHHHHHHHHHHhC
Q 018782          194 HCDRAE-VNMALRLITRMTKE  213 (350)
Q Consensus       194 ~~~~~~-~~~a~~~~~~~~~~  213 (350)
                      -.+... .+...++|..|...
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            333333 34456788888664

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.51  E-value=0.18  Score=36.04  Aligned_cols=126  Identities=12%  Similarity=0.163  Sum_probs=69.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG  233 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  233 (350)
                      .++..+...+.+..+..+++.+...+. .+....+.++..|++.+ .......++.      ..+......+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            445555556666677777776666553 45566666666666543 2333333331      122344455667777777


Q ss_pred             CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782          234 RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       234 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                      -++++..++..+..     .......++    ...++++.|.+++.+      ..++..|..++..+..
T Consensus        84 l~~~~~~l~~k~~~-----~~~Al~~~l----~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~  137 (140)
T smart00299       84 LYEEAVELYKKDGN-----FKDAIVTLI----EHLGNYEKAIEYFVK------QNNPELWAEVLKALLD  137 (140)
T ss_pred             cHHHHHHHHHhhcC-----HHHHHHHHH----HcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence            77777777766532     112222222    222567777776664      1255666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.45  E-value=0.0092  Score=32.70  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=13.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      +..+...|...|++++|+++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444444555555555555555555444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.22  Score=45.38  Aligned_cols=246  Identities=15%  Similarity=0.162  Sum_probs=150.5

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhh-----c------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH-----E------------FTPTVKTYSILVRGLGDVGELSEARKLFDEMLE   72 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   72 (350)
                      ....+.++.++...+++-.-.-+++.+.+     +            ..........-+..+.+...++-|..+-+.-  
T Consensus       283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~--  360 (933)
T KOG2114|consen  283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ--  360 (933)
T ss_pred             ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence            34456677777777765444333333321     0            1122334556677777788888887765542  


Q ss_pred             cCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc
Q 018782           73 RKCPVDILAH----NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN  148 (350)
Q Consensus        73 ~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  148 (350)
                       +.  +..+.    .....-+.+.|++++|...|-+.+.. ++|.     .++.-|.....+.....+++.+.+.|+. +
T Consensus       361 -~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~  430 (933)
T KOG2114|consen  361 -HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-N  430 (933)
T ss_pred             -CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-c
Confidence             22  33333    33344556789999999999888754 3443     3566677778888888999999999864 6


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 018782          149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL  228 (350)
Q Consensus       149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  228 (350)
                      ...-..|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++|..+-.....     +......+   
T Consensus       431 ~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---  499 (933)
T KOG2114|consen  431 SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---  499 (933)
T ss_pred             chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---
Confidence            6666789999999999998887776654 2221  11234556666677777777666544322     33333333   


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD  283 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  283 (350)
                      +...+++++|.+.+..+.-...-+....|...+   . . ..+++-..++-+...
T Consensus       500 le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~-h~P~~t~~ili~~~t  549 (933)
T KOG2114|consen  500 LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-E-HDPEETMKILIELIT  549 (933)
T ss_pred             HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-h-hChHHHHHHHHHHHh
Confidence            445788999999988774222222333333332   1 2 456666666655543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.42  E-value=0.11  Score=35.83  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA---FSYSIFIHAFC  125 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~  125 (350)
                      .-..+++..|+.+.|++.|.+.+.. .|-....||.-..++.-.|+.++|++=+++..+..-..+.   ..|..-...|.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3345677889999999999988876 3447888999999999999999999888888764222222   23444556677


Q ss_pred             hcCCHhHHHHHHHHHhhCC
Q 018782          126 EANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~  144 (350)
                      ..|+.+.|..-|+...+.|
T Consensus       127 l~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HhCchHHHHHhHHHHHHhC
Confidence            8899999998888887776

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.2  Score=40.62  Aligned_cols=152  Identities=11%  Similarity=0.072  Sum_probs=86.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEE  167 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~  167 (350)
                      ..|++.+|-..++++++. .+.|...+...=.+|.-.|+.......++++...   ++|-..++...+..++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            345666666666666665 4556666666666777777777777777766433   222223333444455566777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782          168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN---VMPDRHTYNMVLKLLVRVGRFDRATEVWES  244 (350)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  244 (350)
                      |++.-++..+.+.. |...-.++...+--.++..++.++..+-...-   --.-...|-...-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            77777777666533 55555666666666677777766655432210   000011122223344455677777777754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=0.21  Score=45.55  Aligned_cols=151  Identities=16%  Similarity=0.196  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      ....-+..+.+...++.|..+-..-..+..............+.+.|++++|...|-+-+.. +.|+     .++.-|..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd  409 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD  409 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence            44556666777777777777765543222222344445555667789999999888776654 3332     24555666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      ..+..+--.+++.+.+.|+. +...-+.|+.+|.+.++.++...+.+... .|..  ..-....+..+.+.+-.++|..+
T Consensus       410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence            77777778888888888864 55666778899999998888777766654 2311  11223344455555555555444


Q ss_pred             H
Q 018782          172 L  172 (350)
Q Consensus       172 ~  172 (350)
                      -
T Consensus       486 A  486 (933)
T KOG2114|consen  486 A  486 (933)
T ss_pred             H
Confidence            3

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.23  E-value=0.18  Score=39.65  Aligned_cols=97  Identities=12%  Similarity=0.124  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHhhHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-P-DAFSYSIFI  121 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~  121 (350)
                      .|+..+..+ +.|++..|...|...++..+.  -....+..|..++...|+++.|..+|..+.+.-.. | -+..+..|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            344433333 334455555555555544211  12334444555555555555555555555543111 1 123444455


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhC
Q 018782          122 HAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      .+..+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            5555555666666666555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.23  E-value=0.018  Score=31.56  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSIL   50 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l   50 (350)
                      ++..+..++...|++++|.++|+++.+..|.++..+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            344455555555555555555555555555555554444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.23  E-value=0.07  Score=42.04  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 018782           78 DILAHNSLLEAMCK-----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA----------------NDIHSVFRV  136 (350)
Q Consensus        78 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~  136 (350)
                      |-.+|...+..+..     .+.++-....++.|.+.|++.|..+|+.|+..+-+.                .+-+-++++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v  145 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV  145 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence            44444444444432     234455555566666666666666666666654332                123457888


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782          137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  165 (350)
                      +++|..+|+.||..+-..++.++.+.+-+
T Consensus       146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            88888888888888888888888887754

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.22  E-value=0.27  Score=35.12  Aligned_cols=84  Identities=11%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN  128 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (350)
                      .++..+...+.+.....+++.+...+. .+...++.++..|++.. .....+.+..      ..+......++..|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            344444444555555555555555442 34555555555555442 2233333331      112233344555555555


Q ss_pred             CHhHHHHHHHHH
Q 018782          129 DIHSVFRVLDSM  140 (350)
Q Consensus       129 ~~~~a~~~~~~~  140 (350)
                      -++++..++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.16  E-value=0.28  Score=34.72  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=23.4

Q ss_pred             HhcCCHhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          125 CEANDIHSVFRVLDSMKRYNL--VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      .+.|++++|.+.|+.+...-.  +-...+--.++.+|.+.+++++|...+++.++..
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            344445555555544443210  1122233334444444455555544444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.12  E-value=0.22  Score=39.20  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFY--PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEML  296 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l  296 (350)
                      .|+.-+. +.+.|++..|..-|...++....  -....+--|..++... |+++.|..+|..+.+..  .+--+..+..|
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4554443 34556677777777777654111  0112233355555555 77777777777766542  12234666677


Q ss_pred             HHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782          297 RNRLVGLGFLDIIEILADKMERSTSCTIQEL  327 (350)
Q Consensus       297 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  327 (350)
                      ..+..+.|+.++|..+|+++.+.=|..+...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            7777777777777777777766555554443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.09  E-value=0.6  Score=37.93  Aligned_cols=103  Identities=14%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHhcCCHh---HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782          115 FSYSIFIHAFCEANDIH---SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL  191 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  191 (350)
                      .++..++.++...+..+   +|..+++.+.... +-...++..-+..+.+.++.+.+.+.+.+|...-.. ....+...+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence            35566777777766544   4555555564432 223455555667777788888888888888876221 334455444


Q ss_pred             HHHh--cccCHHHHHHHHHHHHhCCCCCCh
Q 018782          192 AYHC--DRAEVNMALRLITRMTKENVMPDR  219 (350)
Q Consensus       192 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~  219 (350)
                      ..+.  .......+...+..+....+.|..
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            4442  123344566666665555455544

It is also involved in sporulation [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.09  E-value=0.3  Score=34.51  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      +..-.....+.|++++|.+.|+.+....|.   ...+...++.+|.+.++++.|...+++.++..+...-.-|...+.++
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            333344455677888888888887664443   33556667777777888888888887777765443333344444444


Q ss_pred             H
Q 018782           90 C   90 (350)
Q Consensus        90 ~   90 (350)
                      +
T Consensus        93 ~   93 (142)
T PF13512_consen   93 S   93 (142)
T ss_pred             H
Confidence            3

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.08  E-value=0.5  Score=36.98  Aligned_cols=75  Identities=20%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKC--PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                      +..-.+.|++++|.+.|+.+..+.+  +-...+.-.++.++.+.++++.|+...++....-..-....|...|.+.+
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs  117 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS  117 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence            3334577888888888888876522  22345556667778888888888888888776532222223444444444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.06  E-value=0.17  Score=39.93  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=57.0

Q ss_pred             ccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782          147 PNVFTYNCIIRKLCK-----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT  221 (350)
Q Consensus       147 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  221 (350)
                      -|..+|...+..+..     .+..+-....++.|.+.|+.-|..+|+.|+..+-+-.                +.|. ..
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nv  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NV  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HH
Confidence            355556555555533     3445555666666666666666666666666543211                1111 11


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK  267 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  267 (350)
                      +..+.-.|-  .+-+-+.+++++|...|+.||..+-..++.+|.+.
T Consensus       128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~  171 (406)
T KOG3941|consen  128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW  171 (406)
T ss_pred             HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence            111111121  22344677888888888888888888888777554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.58  Score=37.41  Aligned_cols=154  Identities=13%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  165 (350)
                      .......|++.+|...|....... +-+...-..+..+|...|+.+.|..++..+...--.........-+..+.+....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            345667889999999999988763 2345566678889999999999999999886543222223333345555555555


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTYNMVLKLLVRVGRFDRATEVW  242 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  242 (350)
                      .+...+-.+.-..  +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|.-+.+..-+
T Consensus       220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            5555555554443  12666666777788888999998887777665421 235566777888887777544443333

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.99  E-value=0.31  Score=33.75  Aligned_cols=135  Identities=13%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHhH
Q 018782          161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT---YNMVLKLLVRVGRFDR  237 (350)
Q Consensus       161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~  237 (350)
                      -.|..++..++..+.....   +..-++.++.-....-+-+-..+.++.+-+   -.|...   ...++.+|...|.   
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~---   84 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK---   84 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence            4567777777777766542   445555555555544444544444444432   122221   1233444443332   


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                                     +...+...+..+..+ |+-+.-.+++..+...+ .+++..+..+..+|.+.|+..++.+++++.-
T Consensus        85 ---------------~se~vD~ALd~lv~~-~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC  147 (161)
T PF09205_consen   85 ---------------LSEYVDLALDILVKQ-GKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC  147 (161)
T ss_dssp             -----------------HHHHHHHHHHHHT-T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence                           344455566666656 88999999999987755 7899999999999999999999999999998


Q ss_pred             ccCC
Q 018782          318 RSTS  321 (350)
Q Consensus       318 ~~~~  321 (350)
                      +.+.
T Consensus       148 ekG~  151 (161)
T PF09205_consen  148 EKGL  151 (161)
T ss_dssp             HTT-
T ss_pred             Hhch
Confidence            7764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.95  E-value=0.32  Score=33.62  Aligned_cols=53  Identities=19%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      ....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|++-+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34455555555555555443 123344555555555555555555555544433

>PRK11906 transcriptional regulator; Provisional

Probab=95.94  E-value=0.94  Score=38.88  Aligned_cols=116  Identities=14%  Similarity=0.052  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHhh---hcCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           25 HVKVAHQFFDNAK---HEFTPTVKTYSILVRGLGDV---------GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        25 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      ..+.|..+|.+..   ...|.....|..+..++...         ....+|.++-++..+.+.. |+.+...+..+..-.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence            3455666666665   23333344444444333221         2233445555555554332 555555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782           93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      ++++.|...|++....+ +-...+|....-.+.-.|+.++|.+.+++..+
T Consensus       352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            55666666666665542 11223444444444455666666666665444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.82  E-value=0.15  Score=40.72  Aligned_cols=81  Identities=20%  Similarity=0.296  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS-----IGAEPDAFSY  117 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  117 (350)
                      -..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            45678889999999999999999999999884 44889999999999999999999999998865     6788888877


Q ss_pred             HHHHHHH
Q 018782          118 SIFIHAF  124 (350)
Q Consensus       118 ~~l~~~~  124 (350)
                      .......
T Consensus       231 ~~y~~~~  237 (280)
T COG3629         231 ALYEEIL  237 (280)
T ss_pred             HHHHHHh
Confidence            7776663

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.75  E-value=0.69  Score=35.92  Aligned_cols=51  Identities=10%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhhccCcHHHHHHH
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKR---GFYPSVSTYSVMVHGLCKKKGKLEEACKY  277 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~  277 (350)
                      .|-.+....++..|.+.++.-.+.   .-.-+..+...|+.+|- . |+.+++.++
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~-gD~E~~~kv  249 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-E-GDIEEIKKV  249 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-c-CCHHHHHHH
Confidence            333444445555555555553221   11123445555555542 2 555554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.71  E-value=0.23  Score=39.74  Aligned_cols=82  Identities=18%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCccHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNLVPNVFTY  152 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  152 (350)
                      -..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            45677889999999999999999999999874 56888999999999999999999999998854     6889998888


Q ss_pred             HHHHHHHH
Q 018782          153 NCIIRKLC  160 (350)
Q Consensus       153 ~~l~~~~~  160 (350)
                      ........
T Consensus       231 ~~y~~~~~  238 (280)
T COG3629         231 ALYEEILR  238 (280)
T ss_pred             HHHHHHhc
Confidence            77776633

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=1.7  Score=39.51  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=142.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCP----VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIG---------  109 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------  109 (350)
                      ...+|..+.+.....|+++-|..+++.=...+..    .+..-+...+.-+...|+.+....++-.+.+.-         
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l  585 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL  585 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777777889999998888753332211    122234455666777888877777776665431         


Q ss_pred             --CCCCHhhHHHHHH--------HHHhcCCHhHHHHHH--HHHhh-CCCCccHHHHHHHHHHHHccCCHHH---------
Q 018782          110 --AEPDAFSYSIFIH--------AFCEANDIHSVFRVL--DSMKR-YNLVPNVFTYNCIIRKLCKNEKVEE---------  167 (350)
Q Consensus       110 --~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~---------  167 (350)
                        .+.....|..+++        .+...++-..+...|  +.... ..+.+-.........++.+.....-         
T Consensus       586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~  665 (829)
T KOG2280|consen  586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM  665 (829)
T ss_pred             HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence              0111111221111        001111111111111  11000 0011122222333444444433211         


Q ss_pred             -HHHHHHHHHH-cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          168 -AYQLLDEMIE-RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       168 -a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                       -+.+.+.+.. .+......+.+--+.-+...|+..+|.++-.+..    -||...|-.-+.+++..++|++-+++-+..
T Consensus       666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk  741 (829)
T KOG2280|consen  666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK  741 (829)
T ss_pred             HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence             1122222221 2323334455556666777899999988876653    378889998999999999999888776665


Q ss_pred             HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      +.      +.-|...+..+.+. |+.++|.+++-+..     +..    ..+.+|.+.|++.+|.++.-+-+
T Consensus       742 ks------PIGy~PFVe~c~~~-~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  742 KS------PIGYLPFVEACLKQ-GNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             CC------CCCchhHHHHHHhc-ccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHHhc
Confidence            42      44566677776655 99999999987652     222    56788999999999987765443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.61  E-value=1.7  Score=39.33  Aligned_cols=55  Identities=13%  Similarity=0.048  Sum_probs=37.0

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHE--FTPTVKTYSILVRGLGDVGELSEARKLFDE   69 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   69 (350)
                      ..+....+.|++-...+++..-..+  ...-...|+.+...++....+++|.+.|..
T Consensus       765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677888888888777664321  223346677777777777777777777764

>PRK11906 transcriptional regulator; Provisional

Probab=95.44  E-value=1.5  Score=37.71  Aligned_cols=118  Identities=16%  Similarity=0.083  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782           59 ELSEARKLFDEMLER-KCPVD-ILAHNSLLEAMCK---------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA  127 (350)
Q Consensus        59 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (350)
                      ..+.|+.+|.+.... ...|+ ...|..+..++..         ..+..+|.++-++..+.+ +.|......+..+..-.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            355677778777721 12232 4444444443332         123455666666666654 34666666666666666


Q ss_pred             CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      ++.+.+...|++....+ +....+|....-...-.|+.++|.+.+++..+.
T Consensus       352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            77777777777776654 223444555555555677777777777776655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.29  E-value=1  Score=34.90  Aligned_cols=223  Identities=21%  Similarity=0.152  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782           58 GELSEARKLFDEMLERKCP-VDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-GAEPDAFSYSIFIHAFCEANDIHSVFR  135 (350)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  135 (350)
                      +....+...+......... .....+......+...+....+...+...... ........+......+...++...+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            5555555555555544222 12455666666667777777777777666542 123344455556666666666777777


Q ss_pred             HHHHHhhCCCCccHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          136 VLDSMKRYNLVPNVFTYNCIIR-KLCKNEKVEEAYQLLDEMIERGA--NPDEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      .+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            777666543222 112222222 56666777777777776644211  01222233333334455666666666666655


Q ss_pred             CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          213 ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       213 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      .........+..+...+...++++.|...+......  .|+ ...+......+. ..+..+.+...+......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLL-ELGRYEEALEALEKALEL  265 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            422112445555566666666666666666666553  222 222333333333 325566666666655544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.14  E-value=0.7  Score=32.11  Aligned_cols=57  Identities=12%  Similarity=0.068  Sum_probs=20.2

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          157 RKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      ..+...|+.+...+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus        94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3333444444444444443321 12333333344444444444444444444444433

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.14  E-value=0.89  Score=33.35  Aligned_cols=136  Identities=14%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      ..++++.+.+.++.|+...+..++..+.+.|++.....+    ...++-+|.......+-.+.  +....+.++--+|..
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk   86 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK   86 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence            456667777788888999999999999998887654444    44555556554443332222  233444444444443


Q ss_pred             cCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          248 RGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       248 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      + +   ...+..++..+... |++-+|+++.+...... .+++   ..++++....+|...-..+++-...
T Consensus        87 R-L---~~~~~~iievLL~~-g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   87 R-L---GTAYEEIIEVLLSK-GQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             H-h---hhhHHHHHHHHHhC-CCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 0   01245555555656 89999998888754332 2222   4456666667776655555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.12  E-value=0.64  Score=34.73  Aligned_cols=63  Identities=14%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      ..+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+++.....+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566677777777777777777777666533322  34455666667777777777766666654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.01  E-value=1.6  Score=35.69  Aligned_cols=24  Identities=8%  Similarity=0.155  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHH
Q 018782          273 EACKYFEMMVDEGIPPYSSTVEML  296 (350)
Q Consensus       273 ~a~~~~~~~~~~~~~~~~~~~~~l  296 (350)
                      .+.++++.+.+.|+++....|..+
T Consensus       200 r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  200 RVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHcCCccccccccHH
Confidence            444455555555554444444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.01  E-value=1.2  Score=34.06  Aligned_cols=174  Identities=15%  Similarity=0.100  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHHHHHHH
Q 018782          149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTYNMVLK  227 (350)
Q Consensus       149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~  227 (350)
                      +.+||-+.--+...|+++.|.+.|+...+..+.-+-...|.-|. +.--|++..|.+-+...-+.+. .|-...|-.+. 
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence            44566666666667777777777777766643322222222222 2334666666665555544321 11111222111 


Q ss_pred             HHHHcCCHhHHHHHH-HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHH
Q 018782          228 LLVRVGRFDRATEVW-ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP-------YSSTVEMLRNR  299 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~  299 (350)
                        .+.-++.+|..-+ ++..+    .|..-|...|-.|..  |++. ...+++++.... ..       -..||-.+.+.
T Consensus       177 --E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~  246 (297)
T COG4785         177 --EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKIS-EETLMERLKADA-TDNTSLAEHLTETYFYLGKY  246 (297)
T ss_pred             --HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Confidence              1233455554433 22322    244444444433332  2221 122333333221 11       12466677777


Q ss_pred             HHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccc
Q 018782          300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGK  334 (350)
Q Consensus       300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  334 (350)
                      +...|+.++|..+|+-....+.-+..+..-+++..
T Consensus       247 ~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL  281 (297)
T COG4785         247 YLSLGDLDEATALFKLAVANNVYNFVEHRYALLEL  281 (297)
T ss_pred             HhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            77778888888777777666555554444444433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.99  E-value=1.1  Score=33.54  Aligned_cols=61  Identities=10%  Similarity=0.201  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN--VFTYNCIIRKLCKNEKVEEAYQLLDEMI  176 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  176 (350)
                      .+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|+...-.+++..+...+.+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            344455555555555555555555544332221  1233344444444555555554444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.97  E-value=2.4  Score=37.49  Aligned_cols=123  Identities=12%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782          185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL  264 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~  264 (350)
                      .+|...+..-...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-|..++....+- ..|+......+-..+
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHH
Confidence            34555555555666666666666554432 1122233444444444457777666666655543 233444444455555


Q ss_pred             hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782          265 CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE  310 (350)
Q Consensus       265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  310 (350)
                      +...|+++.|..+++...+.- +-....-..-+....+.|..+.+.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence            666678888888888877664 333333333444555667766666

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.86  E-value=1.1  Score=32.91  Aligned_cols=101  Identities=15%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      +.++.+.+.+++|+...+..++..+.+.|++...    .++...++-+|.......+-.+.  +....+.++--+|.+. 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence            3444445556666666666666666666664433    33333344444443333332221  1222233333233221 


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                         =...+..++..+...|++-+|.++.+..
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence               0012334455555666666666665554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.82  E-value=0.04  Score=28.14  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782          278 FEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE  310 (350)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  310 (350)
                      |++.++.. |-++..|..+...+...|++++|+
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45666666 778889999999999999998875

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.77  E-value=1.5  Score=34.15  Aligned_cols=44  Identities=16%  Similarity=0.059  Sum_probs=20.0

Q ss_pred             CcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 018782          269 GKLEEACKYFEMMVDEG---IPPYSSTVEMLRNRLVGLGFLDIIEILA  313 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~  313 (350)
                      .++..|.+.++.-.+.+   -+.+..+...|+.+| ..|+.+++.+++
T Consensus       204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            45555555555533221   122344445554444 245555554443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.66  E-value=2.5  Score=36.18  Aligned_cols=259  Identities=15%  Similarity=0.119  Sum_probs=144.4

Q ss_pred             HHccCChHHHHHHHHHhhhcCCCCHHHH------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHh
Q 018782           20 LCKRKHVKVAHQFFDNAKHEFTPTVKTY------SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE--AMCK   91 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~   91 (350)
                      +.+++++.+|..+|.++.+....++..+      +.++++|-. ++.+.....+..+.+..  | ...|-.+..  .+.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence            4578899999999999977545454333      455666643 45666666665555542  2 223333333  3567


Q ss_pred             cCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC----CccHHHHH
Q 018782           92 AGNIDEAHGMLREMRSI--GAEP------------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL----VPNVFTYN  153 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~  153 (350)
                      .+.+.+|.+.+..-.+.  +..|            |-..=+..+.++...|++.++..+++++...=+    .-+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            88999999988877654  3222            111224567788899999999999988865432    36778888


Q ss_pred             HHHHHHHcc-------C--------CHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcc--cCHHHHHHHHHHH
Q 018782          154 CIIRKLCKN-------E--------KVEEAYQLLDEMIER------GANPDEWSYNAILAYHCDR--AEVNMALRLITRM  210 (350)
Q Consensus       154 ~l~~~~~~~-------g--------~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~  210 (350)
                      .++-.+.++       +        -++.+.-...++...      ...|....+..++....-.  .+..--.++++.-
T Consensus       172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W  251 (549)
T PF07079_consen  172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW  251 (549)
T ss_pred             HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence            755554442       1        123333333444322      2334445555555544321  1222223333333


Q ss_pred             HhCCCCCChh-HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          211 TKENVMPDRH-TYNMVLKLLVRVGRFDRATEVWESMEKRGFYP----SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       211 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      ...-+.|+.. ....+...+.+  +.+++..+.+.+....+.+    =..+|..++.....+ ++...|-..+.-+....
T Consensus       252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~-~~T~~a~q~l~lL~~ld  328 (549)
T PF07079_consen  252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ-VQTEEAKQYLALLKILD  328 (549)
T ss_pred             HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhcC
Confidence            3333455532 22333444443  5666666666555432111    134566666665555 88888888887776543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.66  E-value=2.2  Score=35.42  Aligned_cols=226  Identities=12%  Similarity=0.085  Sum_probs=133.9

Q ss_pred             HHccCChHHHHHHHHHhhhc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHH----HHhcC-CCCCHHHHHHHHHHHHh
Q 018782           20 LCKRKHVKVAHQFFDNAKHE---FTPTVKTYSILVRGLGDVGELSEARKLFDE----MLERK-CPVDILAHNSLLEAMCK   91 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~   91 (350)
                      +....+..+|+..|......   ....-.++..+..+.++.|.+++++..--.    ..+.. -..-...|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778888887765331   122335567777888888888876653322    22110 00113345556666666


Q ss_pred             cCCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-----CccHHHHHHHHHHHHcc
Q 018782           92 AGNIDEAHGMLREMRSI-GAEPD---AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-----VPNVFTYNCIIRKLCKN  162 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~  162 (350)
                      .-++.+++.+-..-... |..|.   -.....+..++.-.+.++++++.|+...+...     .....++..|...|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            66666666655544432 12221   12334466777778889999999887754211     12346788888999999


Q ss_pred             CCHHHHHHHHHHHHHc----CCCCCH-HHHHH-----HHHHHhcccCHHHHHHHHHHHH----hCCCCC-ChhHHHHHHH
Q 018782          163 EKVEEAYQLLDEMIER----GANPDE-WSYNA-----ILAYHCDRAEVNMALRLITRMT----KENVMP-DRHTYNMVLK  227 (350)
Q Consensus       163 g~~~~a~~~~~~~~~~----~~~~~~-~~~~~-----ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~  227 (350)
                      .++++|.-+..+..+.    ++. |. .-|..     +.-++...|....|.+.-++..    ..|-.+ .......+.+
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            9999988877765542    222 22 12222     3334556677777766666643    333222 2234456778


Q ss_pred             HHHHcCCHhHHHHHHHHHH
Q 018782          228 LLVRVGRFDRATEVWESME  246 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~  246 (350)
                      .|...|+.+.|+.-|++..
T Consensus       255 IyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHhcccHhHHHHHHHHHH
Confidence            8999999999988887754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.57  E-value=1.2  Score=32.23  Aligned_cols=87  Identities=15%  Similarity=-0.028  Sum_probs=42.8

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .+.++.+.+..+++.+.---|..+..-..-...+...|++.+|..+|+++....  |....-..|+..|.....-..-..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~   98 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR   98 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence            455666666666666654333334433444445556667777777776665542  222333334444443333333333


Q ss_pred             HHHHHHhCC
Q 018782          101 MLREMRSIG  109 (350)
Q Consensus       101 ~~~~~~~~~  109 (350)
                      .-+++.+.+
T Consensus        99 ~A~evle~~  107 (160)
T PF09613_consen   99 YADEVLESG  107 (160)
T ss_pred             HHHHHHhcC
Confidence            334444443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.47  E-value=2.3  Score=34.86  Aligned_cols=130  Identities=16%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----CHhHHHHHHHHHhhCCC---CccHHHHHHHHHHHHccCCH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE--AN----DIHSVFRVLDSMKRYNL---VPNVFTYNCIIRKLCKNEKV  165 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~  165 (350)
                      +++.+.+++.+.+.|+..+..+|-+.......  ..    ....+..+|+.|.+...   .++...+..++..  ..+++
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34556677777777777666555443333222  11    24567777888766531   1233444444332  33332


Q ss_pred             ----HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccC--HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782          166 ----EEAYQLLDEMIERGANPDEW--SYNAILAYHCDRAE--VNMALRLITRMTKENVMPDRHTYNMVL  226 (350)
Q Consensus       166 ----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~  226 (350)
                          +.++.+|+.+.+.|...+..  ....++..+-...+  ..++.++++.+.+.++++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence                45566666666655544322  23333332222221  346677777777777776666655444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.42  E-value=0.067  Score=27.27  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=18.2

Q ss_pred             HhhhcCCCCHHHHHHHHHHHhccCCHHHHH
Q 018782           35 NAKHEFTPTVKTYSILVRGLGDVGELSEAR   64 (350)
Q Consensus        35 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   64 (350)
                      +.....|.++.+|+.+...|...|++++|+
T Consensus         4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            333444666666666666666666666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.41  E-value=2.5  Score=35.07  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=133.2

Q ss_pred             ccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHhCC-CCCCHhhHHHHHHHHHhcC
Q 018782           56 DVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLR----EMRSIG-AEPDAFSYSIFIHAFCEAN  128 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~  128 (350)
                      ...+.++|+..+.+-..+-  ...--.++..+..+.++.|.+++++..--    ...+.. -..--..|..+.+++-+..
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666554430  01122345556677778888777654322    222210 0011235666677777777


Q ss_pred             CHhHHHHHHHHHhhC-CCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcccC
Q 018782          129 DIHSVFRVLDSMKRY-NLVP---NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-----ANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       129 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~  199 (350)
                      ++.+++.+-+.-... |..|   ......++..++...+.++++++.|+...+..     .......+..|-..|.+..|
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            778888777765442 2222   12344557788888889999999999876531     11234568888899999999


Q ss_pred             HHHHHHHHHHHHhC----CCCCChhHH-----HHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHH----HHHHHHHh
Q 018782          200 VNMALRLITRMTKE----NVMPDRHTY-----NMVLKLLVRVGRFDRATEVWESMEKRGF-YPSVSTY----SVMVHGLC  265 (350)
Q Consensus       200 ~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~----~~ll~~~~  265 (350)
                      .++|.-+.....+.    ++.--..-|     ..+.-++...|.+..|.+..++..+..+ .-|..++    ..+...|-
T Consensus       178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR  257 (518)
T KOG1941|consen  178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR  257 (518)
T ss_pred             hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            99988777665432    221111122     3345567788998888888887654311 1133333    33444443


Q ss_pred             hccCcHHHHHHHHHHHH
Q 018782          266 KKKGKLEEACKYFEMMV  282 (350)
Q Consensus       266 ~~~~~~~~a~~~~~~~~  282 (350)
                       ..|+.+.|+.-|+...
T Consensus       258 -~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  258 -SRGDLERAFRRYEQAM  273 (518)
T ss_pred             -hcccHhHHHHHHHHHH
Confidence             3489999888887653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.32  E-value=1.3  Score=31.54  Aligned_cols=52  Identities=15%  Similarity=0.056  Sum_probs=30.1

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      ..++++++..+++.+.--.|.....-..-...+...|++.+|.++|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            3566666666666665433333333333444455666777777777766665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.32  E-value=0.14  Score=26.42  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=11.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLRE  104 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~  104 (350)
                      |..|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555555555555555

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.29  E-value=1.9  Score=33.30  Aligned_cols=202  Identities=18%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA-  192 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-  192 (350)
                      ..+......+...+++..+...+...... ........+......+...+.+..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            34444444455555555555555444331 112333444444444444555555555555554432221 111111111 


Q ss_pred             HHhcccCHHHHHHHHHHHHhCCC--CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          193 YHCDRAEVNMALRLITRMTKENV--MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       193 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      .+...++++.+...+........  ......+......+...++.+.+...+..............+..+-..+... ++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL-GK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc-cc
Confidence            34455555555555555433111  0112222222333444455555555555554431110123333333333322 44


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      ++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus       218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555555554433 112333333333333444455555555554443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.17  E-value=4.3  Score=36.81  Aligned_cols=180  Identities=13%  Similarity=0.084  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhc
Q 018782           60 LSEARKLFDEMLERKCPVDILAHNSLLEA-----MCKAGNIDEAHGMLREMRS-------IGAEPDAFSYSIFIHAFCEA  127 (350)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  127 (350)
                      ...+.++++...+.|   +......+..+     +....+.+.|+.+|+.+.+       .|   .+.....+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            456777777777765   33333333332     2345677888888887766       44   223445566666553


Q ss_pred             C-----CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cccC
Q 018782          128 N-----DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC--DRAE  199 (350)
Q Consensus       128 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~  199 (350)
                      .     +.+.|..++....+.| .|+....-..+..... ..+...|.++|...-+.|.. ....+..++....  ...+
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence            2     5666888888777776 3444443333322222 24567888888887777633 2222222222111  3456


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782          200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG  249 (350)
Q Consensus       200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  249 (350)
                      ...|..++++..+.|. |...--...+..+.. +.++.+.-.+..+.+.|
T Consensus       380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            7778888888777762 322211222223333 56666665555555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.01  E-value=0.15  Score=26.37  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEML   71 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~   71 (350)
                      +|..|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888888888888888888854

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.99  E-value=3.7  Score=35.48  Aligned_cols=122  Identities=11%  Similarity=-0.030  Sum_probs=85.6

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      ...|++-.|.+-........+.++.........+...|.++.+.+.+...... +.....+...+++...+.|++++|..
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence            34567666655554444445555555555566677889999999888776554 34466777888899999999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      +-.-|....++ ++.............|-++++...|+++...+
T Consensus       379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            99999877654 44444444444556677889999998886654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.96  E-value=3.9  Score=35.60  Aligned_cols=77  Identities=10%  Similarity=0.103  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA-NPDEWSYNAILA  192 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~  192 (350)
                      +-.-+..++-+.|+.++|++.++++.+.. ......+...|+.++...+.+.++..++.+..+... +.-...|+..+-
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            33456667778888888888888887643 112345677888888888888888888888654322 222345665543

The molecular function of this protein is uncertain.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.84  E-value=0.18  Score=25.35  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          291 STVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      ..+..+...+...|++++|.+.+++..+..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3556677777777777777777777665544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.67  E-value=2  Score=31.22  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             HHHhcccCHHHHHHHHHHHHhCCCCCChhHH-HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          192 AYHCDRAEVNMALRLITRMTKENVMPDRHTY-NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      ..-.+.++.+.+..++..+.-.  .|..... ..-...+...|+|.+|.++|+++.+.  .|....-..|+..+....|+
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence            3445778888888888888774  3443322 22344567888999999999998765  34444444454443333233


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782          271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  311 (350)
                      . .=..+-+++.+.+  +|+.+. .+++.+....+...|..
T Consensus        94 ~-~Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   94 P-SWRRYADEVLESG--ADPDAR-ALVRALLARADLEPAHE  130 (160)
T ss_pred             h-HHHHHHHHHHhcC--CChHHH-HHHHHHHHhccccchhh
Confidence            2 2223334455554  344443 34444444444444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.41  E-value=0.76  Score=30.20  Aligned_cols=60  Identities=15%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      +..+-+..+....+.|++....+.+++|.+.+++..|.++++.++.. ..+....|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            34455555566666777777777777777777777777777777643 1112225555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.39  E-value=0.23  Score=25.04  Aligned_cols=31  Identities=13%  Similarity=-0.035  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          291 STVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      .+|..++.++...|++++|+..+++..+.+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4566677777777777777777777766544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.18  E-value=2.2  Score=32.23  Aligned_cols=91  Identities=12%  Similarity=0.109  Sum_probs=57.9

Q ss_pred             HHHhcccCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhh
Q 018782          192 AYHCDRAEVNMALRLITRMTKENVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV-STYSVMVHGLCK  266 (350)
Q Consensus       192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~  266 (350)
                      .-+...|++++|..-|...+...+...    ...|..-..++.+.+.++.|..-....++.+  |+. .....-..+|..
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence            346678888888888888887632211    1234444556778888888888888777753  321 111222234444


Q ss_pred             ccCcHHHHHHHHHHHHhCC
Q 018782          267 KKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       267 ~~~~~~~a~~~~~~~~~~~  285 (350)
                      . ..+++|++-|+.+.+..
T Consensus       181 ~-ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  181 M-EKYEEALEDYKKILESD  198 (271)
T ss_pred             h-hhHHHHHHHHHHHHHhC
Confidence            4 77888888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.01  E-value=0.35  Score=24.36  Aligned_cols=26  Identities=19%  Similarity=0.163  Sum_probs=11.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      |..+..++...|++++|+..|++.++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            34444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.91  E-value=1.5  Score=28.93  Aligned_cols=50  Identities=6%  Similarity=-0.003  Sum_probs=35.2

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      +.-+..+-++.+...++-|++.+..+.+++|.+.+++..|+++++-++.+
T Consensus        25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34466666777777788888888888888888888888888888877654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.85  E-value=1.7  Score=28.26  Aligned_cols=63  Identities=5%  Similarity=0.028  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          257 YSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       257 ~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      |..--..+..... +.-++.+-++.+...++-|++.+..+.+++|.+.+++..|.++++-++.+
T Consensus         8 F~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K   71 (103)
T cd00923           8 FDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK   71 (103)
T ss_pred             HHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3333334444432 55567777777777888888888888888888888888888888877643

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.78  E-value=3  Score=30.74  Aligned_cols=123  Identities=9%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH-HHHH--HHHHHHccCCHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAF-SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF-TYNC--IIRKLCKNEKVE  166 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~~  166 (350)
                      ..+..++|+.-|..+.+.|...=+. ...-........|+...|...|.++-.....|-.. ...-  -.-.+...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444555555555555544321111 11112223344555555555555554432112111 1111  112234555555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782          167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE  213 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  213 (350)
                      .....++-+...+-..-...-..|.-+-.+.|++..|...|..+...
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            55555555444332223333344444445566666666666655543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.67  E-value=7.7  Score=35.23  Aligned_cols=284  Identities=12%  Similarity=0.074  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHhhhcCCCCHHHHHHHHHH---HhccCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcC--
Q 018782           26 VKVAHQFFDNAKHEFTPTVKTYSILVRG---LGDVGELSEARKLFDEMLE-------RKCPVDILAHNSLLEAMCKAG--   93 (350)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~--   93 (350)
                      ...|.++++................+..   +....+.+.|...|....+       .+   .+...+-+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            4568888888765323333333333333   3356799999999999877       55   3345666777777743  


Q ss_pred             ---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH--ccCCHHH
Q 018782           94 ---NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE-ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC--KNEKVEE  167 (350)
Q Consensus        94 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~  167 (350)
                         +.+.|+.++...-+.|. |+...+-..+..... ..+...|.++|....+.|.. ...-+.+++....  ...+.+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~  382 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL  382 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence               66789999999998874 455443333322222 24678999999999998833 3322222222222  3457899


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH---HH----cCCHhHHH
Q 018782          168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL-KLL---VR----VGRFDRAT  239 (350)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~~~~a~  239 (350)
                      |..++.+.-+.|. |...--...+..+.. +.++.+.-.+..+...+.. ...+-...+ ...   ..    ..+...+.
T Consensus       383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~  459 (552)
T KOG1550|consen  383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF  459 (552)
T ss_pred             HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence            9999999998873 232222223333344 7777777666666665542 111111111 110   11    12455566


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChhHHHHHH
Q 018782          240 EVWESMEKRGFYPSVSTYSVMVHGLCKK---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL---GFLDIIEILA  313 (350)
Q Consensus       240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~  313 (350)
                      ..+......|   +......+-..|..-   ..+++.|...+......+    ......+...+...   ..+..|.+++
T Consensus       460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~  532 (552)
T KOG1550|consen  460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYY  532 (552)
T ss_pred             HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence            6666665443   222233332222111   135777777777766655    33333444433321   1267788888


Q ss_pred             HHhhccCCCcH
Q 018782          314 DKMERSTSCTI  324 (350)
Q Consensus       314 ~~~~~~~~~~~  324 (350)
                      ++....+....
T Consensus       533 ~~~~~~~~~~~  543 (552)
T KOG1550|consen  533 DQASEEDSRAY  543 (552)
T ss_pred             HHHHhcCchhh
Confidence            88776544433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.63  E-value=2.8  Score=34.02  Aligned_cols=100  Identities=10%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHH
Q 018782          146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTY  222 (350)
Q Consensus       146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  222 (350)
                      +.+..+...++.......+++.+...+-++....   ..|+. +-...++. +-.-++++++.++..-+..|+-||..++
T Consensus        61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~  138 (418)
T KOG4570|consen   61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTF  138 (418)
T ss_pred             CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchhhH
Confidence            3344444444444444455555555555544321   11111 11112222 2223455555555555556666666666


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          223 NMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       223 ~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      +.+++.+.+.+++.+|.++.-.|..
T Consensus       139 c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  139 CLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH
Confidence            6666666666666666665555543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.60  E-value=4.6  Score=32.52  Aligned_cols=144  Identities=13%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHhhHHHHHH
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLE-RKCPVDILAHNSLLEAMCK-AG-NIDEAHGMLREMRS-IGAEPDAFSYSIFIH  122 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~  122 (350)
                      |..|+.   +..-+.+|+++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++.
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            444443   23456677777773322 2234477777777777665 22 22333333343432 234567778888899


Q ss_pred             HHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 018782          123 AFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE-----MIERGANPDEWSYNAILAY  193 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~  193 (350)
                      .+++.+++.+..++++..... +...|...|..+|+.....|+..-...+.++     +.+.++..+...-..+-..
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L  287 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL  287 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence            999999999999999887655 5566888899999999999998877777765     2344555555554444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.58  E-value=6.6  Score=34.27  Aligned_cols=78  Identities=12%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHH
Q 018782          148 NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNM  224 (350)
Q Consensus       148 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~  224 (350)
                      -..+-..+..++-+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+..+... |.  ...|+.
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTa  336 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTA  336 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHH
Confidence            3444455677777889999999999999875432 2345677889999999999999999988765433 33  234554


Q ss_pred             HH
Q 018782          225 VL  226 (350)
Q Consensus       225 l~  226 (350)
                      .+
T Consensus       337 AL  338 (539)
T PF04184_consen  337 AL  338 (539)
T ss_pred             HH
Confidence            44

The molecular function of this protein is uncertain.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.51  E-value=0.96  Score=36.55  Aligned_cols=105  Identities=12%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             hhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782           37 KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK---CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD  113 (350)
Q Consensus        37 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  113 (350)
                      ..+.+.+..+...++..-....+++.++..+-++....   ..|+... .+.++.+. .-++++++.++..=++.|+-||
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence            34556666666666666666777777777776665431   1112111 12233332 2355677777777777788888


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      .++++.+|..+.+.+++.+|.++.-.|...
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888888888888887777777666443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=92.47  E-value=8  Score=34.97  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=15.0

Q ss_pred             HHHHHhccCCHHHHHHHHHH
Q 018782           50 LVRGLGDVGELSEARKLFDE   69 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~   69 (350)
                      +...++-.|.+.+|.++|.+
T Consensus       638 lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  638 LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHHhhhhHHHHHHHHHH
Confidence            45566777888888888865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=3  Score=37.07  Aligned_cols=151  Identities=15%  Similarity=0.113  Sum_probs=95.2

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      .-.|+++.|..++..+.+      ...+.++..+-+.|-.++|+++-         +|+..   -.....+.|+++.|.+
T Consensus       597 vmrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~  658 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD  658 (794)
T ss_pred             hhhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence            446777777776555442      33455666666777776666542         22222   1233456788888887


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      +..+..      +..-|..|..+....+++..|.+.|.....         |..|+-.+...|+.+....+-....+.|.
T Consensus       659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~  723 (794)
T KOG0276|consen  659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK  723 (794)
T ss_pred             HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence            766652      455688888888888888888888876654         33566667777777766666666666653


Q ss_pred             CCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          181 NPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      . +.     ...+|...|+++++.+++..-
T Consensus       724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  724 N-NL-----AFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence            2 22     233455678888888777543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.03  E-value=7.9  Score=33.94  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782          112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL  191 (350)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  191 (350)
                      .|.....+++..+..+..+.-...+..+|...|  .+...|..++.+|... ..+.-..+++++.+.... |...-..|.
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            344455555666665555566666666665544  4555566666666555 445555556555554332 222222222


Q ss_pred             HHHhcccCHHHHHHHHHHHHh
Q 018782          192 AYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       192 ~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      . +....+.+.+..+|..+..
T Consensus       140 ~-~yEkik~sk~a~~f~Ka~y  159 (711)
T COG1747         140 D-KYEKIKKSKAAEFFGKALY  159 (711)
T ss_pred             H-HHHHhchhhHHHHHHHHHH
Confidence            2 2223555555555555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.00  E-value=13  Score=36.27  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhccC--CHHHHHHHHHHHHh
Q 018782           45 KTYSILVRGLGDVG--ELSEARKLFDEMLE   72 (350)
Q Consensus        45 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~   72 (350)
                      .....++..|.+.+  .++.++....++..
T Consensus       791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  791 KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            44455666666665  56666665555553

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.88  E-value=1.7  Score=33.31  Aligned_cols=77  Identities=12%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEA   88 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~   88 (350)
                      |.+..++.+.+.+++++++...+.-.+..|.+...-..++..++-.|++++|..-++-.-...  ..+-...|..++.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            344556666777777777777776655556667777777777777777777776665544331  22344556655554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.88  E-value=7  Score=32.95  Aligned_cols=53  Identities=15%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLE   72 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   72 (350)
                      ..+.-+.|+++...+........ .++...+..+...  ..++++++...++....
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~-~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED-SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC-ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            45667788888855555554432 1234444444433  77888888888777654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.73  E-value=4.4  Score=30.70  Aligned_cols=80  Identities=11%  Similarity=0.029  Sum_probs=58.4

Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCC
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE---GIPPYSSTVEMLRNRLVGLGF  305 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~  305 (350)
                      +.+.|+ +.|.+.|-.+...+.--++.....+.. |... .+.+++..++-+..+.   +-.+|+..+.+|+..+.+.|+
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            344444 678888888877665555555555554 4445 7999999999888754   236789999999999999999


Q ss_pred             hhHHHH
Q 018782          306 LDIIEI  311 (350)
Q Consensus       306 ~~~a~~  311 (350)
                      ++.|--
T Consensus       194 ~e~AYi  199 (203)
T PF11207_consen  194 YEQAYI  199 (203)
T ss_pred             hhhhhh
Confidence            988753

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.71  E-value=0.27  Score=24.43  Aligned_cols=26  Identities=15%  Similarity=0.022  Sum_probs=14.4

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          295 MLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       295 ~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      .+..++.+.|++++|.+.|+++...-
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            44455555566666666666555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.59  E-value=0.53  Score=24.91  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEML   71 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~   71 (350)
                      +++.+...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44445555555555555555554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.57  E-value=11  Score=34.73  Aligned_cols=181  Identities=14%  Similarity=0.192  Sum_probs=106.0

Q ss_pred             HHHHHHHhhhcC--CCC--HHHHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHH
Q 018782           29 AHQFFDNAKHEF--TPT--VKTYSILVRGLG-DVGELSEARKLFDEMLERKCPVDIL-----AHNSLLEAMCKAGNIDEA   98 (350)
Q Consensus        29 a~~~~~~~~~~~--~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a   98 (350)
                      |++.++.+.+..  +|.  ..++..+...+. ...+++.|+..+++.....-.++..     +-..++..+.+.+... |
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a  118 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A  118 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence            455555554333  332  345666777776 6789999999999875543222222     2234566666666655 8


Q ss_pred             HHHHHHHHhCC----CCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHhhCC---CCccHHHHHHHHHHHH--ccCCHHHH
Q 018782           99 HGMLREMRSIG----AEPDAFSYSIF-IHAFCEANDIHSVFRVLDSMKRYN---LVPNVFTYNCIIRKLC--KNEKVEEA  168 (350)
Q Consensus        99 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a  168 (350)
                      ...+++.++.-    ..+-...|..+ +..+...++...|.+.++.+....   ..|...++-.++.+..  +.+.++++
T Consensus       119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~  198 (608)
T PF10345_consen  119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV  198 (608)
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence            88888876531    11222334443 333334479999999998875432   2444555555555543  45667778


Q ss_pred             HHHHHHHHHcCC---------CCCHHHHHHHHHHHh--cccCHHHHHHHHHHH
Q 018782          169 YQLLDEMIERGA---------NPDEWSYNAILAYHC--DRAEVNMALRLITRM  210 (350)
Q Consensus       169 ~~~~~~~~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~  210 (350)
                      .+.+..+.....         .|...+|..++..++  ..|+++.+...++.+
T Consensus       199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888877643222         235566777776655  567766666555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.55  E-value=0.73  Score=23.00  Aligned_cols=27  Identities=15%  Similarity=0.340  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      .+..+..++...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555555666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.33  E-value=3.3  Score=31.36  Aligned_cols=42  Identities=7%  Similarity=0.202  Sum_probs=18.3

Q ss_pred             ccCHHHHHHHHHHHHhC---CCCCChhHHHHHHHHHHHcCCHhHH
Q 018782          197 RAEVNMALRLITRMTKE---NVMPDRHTYNMVLKLLVRVGRFDRA  238 (350)
Q Consensus       197 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a  238 (350)
                      ..+.+++..++....+.   +-.+|+..+..|+..+.+.|+++.|
T Consensus       153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            33444444444443332   1133444444455554444444444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.11  E-value=0.63  Score=25.34  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=18.8

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          295 MLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       295 ~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      .+.++|...|+.+.|.++++++...+
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            46677777788888888777777543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=91.04  E-value=13  Score=34.36  Aligned_cols=59  Identities=5%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHhc
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-------LSEARKLFDEMLER   73 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~   73 (350)
                      .+|-.|.+.|++++|.++..............+...+..|....+       -+....-|++....
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            567778899999999999977777777777888888888876532       23455555555544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.70  E-value=0.9  Score=23.97  Aligned_cols=27  Identities=33%  Similarity=0.326  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            355566666666666666666666654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.47  E-value=3.5  Score=26.94  Aligned_cols=63  Identities=14%  Similarity=0.232  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      +.-++.+-+..+....+.|++....+.+++|.+.+++..|.++++..+.. ...+...|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            33445556666666667777777777788888888888888887777632 1113345555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.45  E-value=0.5  Score=23.39  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=11.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhc
Q 018782           50 LVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      +..++.+.|++++|.+.|+++++.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            344444455555555555554443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.40  E-value=6.8  Score=30.17  Aligned_cols=183  Identities=15%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782           57 VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV  136 (350)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  136 (350)
                      .|-+.-|.--|.+.....+. -+.+||-|.--+...|+++.|.+.|+...+....-+-...|- .-.+--.|+++.|.+-
T Consensus        78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHH
Confidence            34444455555555544222 466788888888888888888888888877543222222222 2223345778888777


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHH-HHhcccCHHHHHHHHHHHHhCC
Q 018782          137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL-DEMIERGANPDEWSYNAILA-YHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      +-+.-+..  |+..--...+-.--..-++.+|..-+ ++..+.    |..-|...|- .|...=..+   .+++.+....
T Consensus       156 ~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a  226 (297)
T COG4785         156 LLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADA  226 (297)
T ss_pred             HHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhc
Confidence            76665543  22111111222222334555555433 333332    4344443332 222221222   2233332221


Q ss_pred             C------CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782          215 V------MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF  250 (350)
Q Consensus       215 ~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  250 (350)
                      -      ..=..||-.+.+.+...|+.++|..+|+-.+...+
T Consensus       227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            1      01136788899999999999999999998886533

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.38  E-value=4.6  Score=29.99  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHH-------HHhcCCCCCHHHHHHHHHHHHhcCC-
Q 018782           26 VKVAHQFFDNAKHEFTPTVKTYSILVRGLGDV---GELSEARKLFDE-------MLERKCPVDILAHNSLLEAMCKAGN-   94 (350)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~-   94 (350)
                      |+.|.+.++..-...|.+...++.-..++...   ....++.+++++       .+..++. ...++..+..++...+. 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhh
Confidence            45566666655455677777666555555433   333344444444       3333222 33555556555554322 


Q ss_pred             ----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 018782           95 ----------IDEAHGMLREMRSIGAEPDAFSYSIFIHAF  124 (350)
Q Consensus        95 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (350)
                                +++|.+.|++..+  ..|+...|+.-+...
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA  123 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence                      3444444444444  346666666555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.29  E-value=0.52  Score=22.15  Aligned_cols=23  Identities=26%  Similarity=0.112  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHH
Q 018782          292 TVEMLRNRLVGLGFLDIIEILAD  314 (350)
Q Consensus       292 ~~~~l~~~~~~~g~~~~a~~~~~  314 (350)
                      ....+..++...|++++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34566777788888888877765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.23  E-value=10  Score=31.94  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      +.+.-+.|+++...+........  .++...+..+...  ..++++++....+....
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            45566778888755555544432  2244445544433  77888888877777764

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.08  E-value=0.83  Score=37.37  Aligned_cols=90  Identities=16%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             HHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          192 AYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       192 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      .-|.+.|.+++|+..|......  .| |..++..-..+|.+...+..|+.-.......+- .-...|..-..+-. ..|+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~-~Lg~  180 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARE-SLGN  180 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHH-HHhh
Confidence            4588999999999999887764  34 778888888899999999988888877765410 01223333333322 2266


Q ss_pred             HHHHHHHHHHHHhCC
Q 018782          271 LEEACKYFEMMVDEG  285 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~  285 (350)
                      ..+|.+-++..++..
T Consensus       181 ~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  181 NMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHhHHHHHhhC
Confidence            666666666666543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.06  E-value=7.8  Score=30.32  Aligned_cols=82  Identities=15%  Similarity=0.119  Sum_probs=36.3

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHHcCCHhH
Q 018782          160 CKNEKVEEAYQLLDEMIERGANPDE-WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRH-TYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~  237 (350)
                      .....++.|...|.+.+..  .|+. .-|+.-+..+.+..+++.+..--.+.++  +.||.. ....+..++.....++.
T Consensus        21 f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence            3344455555555444443  3333 2233334444445555555544444444  223322 12223344444555555


Q ss_pred             HHHHHHHH
Q 018782          238 ATEVWESM  245 (350)
Q Consensus       238 a~~~~~~~  245 (350)
                      |...+.+.
T Consensus        97 aI~~Lqra  104 (284)
T KOG4642|consen   97 AIKVLQRA  104 (284)
T ss_pred             HHHHHHHH
Confidence            55555554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.77  E-value=6.4  Score=29.86  Aligned_cols=92  Identities=12%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782           52 RGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA  127 (350)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (350)
                      .-+...|++++|..-|...+..-.+..    ...|..-..++.+.+.++.|+.--...++.+. .......--..+|.+.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence            344577888888888888887632222    23344445677888888888888888877642 1222333345678888


Q ss_pred             CCHhHHHHHHHHHhhCC
Q 018782          128 NDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       128 ~~~~~a~~~~~~~~~~~  144 (350)
                      ..++.|+.-|+++.+..
T Consensus       182 ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESD  198 (271)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            88888888888887754

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.54  E-value=0.18  Score=36.16  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=19.2

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782           54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML  102 (350)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  102 (350)
                      +.+.+.+.....+++.+...+...+...++.++..|++.++.+...+++
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            3333444444444444443333333444444444444443333333333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.43  E-value=14  Score=32.26  Aligned_cols=119  Identities=13%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             hcCCHhHHHH-HHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782          126 EANDIHSVFR-VLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       126 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  204 (350)
                      ..||+-.|.+ ++..+....-.|+.....+  ..+...|+++.+...+....+. +.....+..++++.....++++.|.
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence            3455555543 3333333322344333322  3455678888888877765543 2335667777888888888888888


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          205 RLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ..-..|....+. +++......-..-..|-++++...|+++...
T Consensus       378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            888877776553 4454444444445567778888888877654

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.34  E-value=0.16  Score=36.48  Aligned_cols=85  Identities=12%  Similarity=0.230  Sum_probs=46.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR  234 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (350)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.       .+..-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            3455555666666666666666554444566666666666666655665555541       111222345555666666


Q ss_pred             HhHHHHHHHHHH
Q 018782          235 FDRATEVWESME  246 (350)
Q Consensus       235 ~~~a~~~~~~~~  246 (350)
                      +++|.-++.++.
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            666666555543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.25  E-value=7.2  Score=28.82  Aligned_cols=135  Identities=14%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH-HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHH
Q 018782          184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT-YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS-TYSVMV  261 (350)
Q Consensus       184 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll  261 (350)
                      ...|...+. +.+.+..++|+.-|..+.+.|...-+.. .-.......+.|+-..|...|+++-.....|-.. -...+-
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            344544444 3455666777777777766654321111 1122234456677777777777776543344332 111121


Q ss_pred             HHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          262 HGL-CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       262 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      .+| ....|.++......+-+...+-+.....-..|.-+-.+.|++..|..+|..+-..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            121 2234777777777776665553444555667777777888888888888877653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.23  E-value=4.2  Score=33.54  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=66.9

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      .-|.++|.+++|+..|.......|.|+.++..-..+|.+..++..|+.-....+..+- .-...|..-+.+--..|...+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence            4567899999999999998877788999999999999999999888877776655421 123344444444445566777


Q ss_pred             HHHHHHHHHhCCCCCC
Q 018782           98 AHGMLREMRSIGAEPD  113 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~  113 (350)
                      |.+-++..+..  +|+
T Consensus       184 AKkD~E~vL~L--EP~  197 (536)
T KOG4648|consen  184 AKKDCETVLAL--EPK  197 (536)
T ss_pred             HHHhHHHHHhh--Ccc
Confidence            77777777663  455

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=11  Score=30.47  Aligned_cols=122  Identities=14%  Similarity=0.077  Sum_probs=60.6

Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCChh-------HHHHHHHHHHHcCCHhHHHHHHHHHH----hcCCCCCHHHHHHHHHH
Q 018782          195 CDRAEVNMALRLITRMTKENVMPDRH-------TYNMVLKLLVRVGRFDRATEVWESME----KRGFYPSVSTYSVMVHG  263 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~ll~~  263 (350)
                      .+.+++++|+..+.++...|+..+..       +...+.+.|...|++..-.+......    +..-.-......+++..
T Consensus        14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek   93 (421)
T COG5159          14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK   93 (421)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence            34445555555555555544433322       23345555555555544444332222    11111223344555555


Q ss_pred             HhhccCcHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHcCCChhHHHHHHHHh
Q 018782          264 LCKKKGKLEEACKYFEMMVDEGIPPYSST-----VEMLRNRLVGLGFLDIIEILADKM  316 (350)
Q Consensus       264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~  316 (350)
                      +-.....++.-+++....++...+.+...     =..++.++.+.|.+.+|..+...+
T Consensus        94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l  151 (421)
T COG5159          94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL  151 (421)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            54444556666666666555432222222     234567788888888888765544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.99  E-value=6.4  Score=35.20  Aligned_cols=178  Identities=8%  Similarity=0.076  Sum_probs=115.5

Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 018782           55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF  134 (350)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  134 (350)
                      .-.|+++.|..++..+.       ....+.++..+.+.|..++|+++         .+|+...   .....+.|+++.|.
T Consensus       597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~  657 (794)
T KOG0276|consen  597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF  657 (794)
T ss_pred             hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence            44577787777655443       23445667777788887777653         3333322   23345678999888


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      ++..+.      .+..-|..|.++..+.|++..|.+.|.....         |..|+-.+...|+.+....+-....+.|
T Consensus       658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            876554      3567799999999999999999999877653         4456666777788777777777777666


Q ss_pred             CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 018782          215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM  280 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~  280 (350)
                      . .|     ...-+|...|+++++.+++.+-..   .|..   ..+.+.|+-  .+..+...++++
T Consensus       723 ~-~N-----~AF~~~~l~g~~~~C~~lLi~t~r---~peA---al~ArtYlp--s~vs~iv~~wk~  774 (794)
T KOG0276|consen  723 K-NN-----LAFLAYFLSGDYEECLELLISTQR---LPEA---ALFARTYLP--SQVSRIVELWKE  774 (794)
T ss_pred             c-cc-----hHHHHHHHcCCHHHHHHHHHhcCc---CcHH---HHHHhhhCh--HHHHHHHHHHHH
Confidence            3 33     233466778999999998876543   2322   222333332  345555555554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.98  E-value=0.92  Score=22.69  Aligned_cols=29  Identities=14%  Similarity=-0.095  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          291 STVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      .+|..+...+...|++++|...|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34566677777777777777777776554

...

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.47  E-value=1.4  Score=23.99  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=14.8

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      +..+|...|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            455666666666666666666543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=88.33  E-value=11  Score=30.35  Aligned_cols=87  Identities=9%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH-----
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC-----  160 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----  160 (350)
                      |.+++..++|.+++...-+.-+.--+.-......-|-.|.+.++...+.++-..-.+..-.-+...|..++..|.     
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            677777888888777665554322122233455556667777887777777666544321223334655554443     


Q ss_pred             ccCCHHHHHHHH
Q 018782          161 KNEKVEEAYQLL  172 (350)
Q Consensus       161 ~~g~~~~a~~~~  172 (350)
                      -.|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence            467788887766

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=88.19  E-value=12  Score=30.20  Aligned_cols=138  Identities=13%  Similarity=0.125  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc-cc-CHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782          164 KVEEAYQLLDEMIE-RGANPDEWSYNAILAYHCD-RA-EVNMALRLITRMTKE-NVMPDRHTYNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       164 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  239 (350)
                      ..-+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..++..++|.+-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            34566666663221 2234467777777777664 22 222233333333332 34567777788888888888888888


Q ss_pred             HHHHHHHhc-CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHHc
Q 018782          240 EVWESMEKR-GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM-----MVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       240 ~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                      ++|...... +..-|...|...|...... |+..-..++..+     +.+.+++.+...-..+-+.+.+
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~s-gD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVES-GDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHc-CCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            888887754 5566778888888887766 888777776665     2455666666666665555443

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=88.12  E-value=10  Score=30.49  Aligned_cols=87  Identities=5%  Similarity=-0.030  Sum_probs=42.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----  126 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  126 (350)
                      |.+++..+++.+++...-+--+.--+..+.....-|-.|.+.+++..+.++-..-....-..+...|..++..|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            5566666666666555544332211122333344444466666666666665555543222222235555444433    


Q ss_pred             -cCCHhHHHHHH
Q 018782          127 -ANDIHSVFRVL  137 (350)
Q Consensus       127 -~~~~~~a~~~~  137 (350)
                       .|.+++|.++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             46666666655

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.75  E-value=8.1  Score=34.50  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=43.1

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 018782           54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV  133 (350)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  133 (350)
                      +.-.|+...|.+-+.......+.-.-.....|.....+.|....|..++.+.+... ...+.++..+..++....++++|
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence            33445555555555444332221122223334444555555555555555555443 23334455555555556666666


Q ss_pred             HHHHHHHhhC
Q 018782          134 FRVLDSMKRY  143 (350)
Q Consensus       134 ~~~~~~~~~~  143 (350)
                      ++.|++..+.
T Consensus       696 ~~~~~~a~~~  705 (886)
T KOG4507|consen  696 LEAFRQALKL  705 (886)
T ss_pred             HHHHHHHHhc
Confidence            6666555543

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.61  E-value=6.2  Score=26.04  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=49.2

Q ss_pred             ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782           25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE  104 (350)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  104 (350)
                      ..++|..+-+.+.........+-..-+..+...|++++|..+.+.+    ..||...|..|..  .+.|..+.+..-+.+
T Consensus        20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r   93 (115)
T TIGR02508        20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR   93 (115)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence            4567777777665432112222222334556777888887776655    3567777666543  356666666666666


Q ss_pred             HHhCCCCCCHhhH
Q 018782          105 MRSIGAEPDAFSY  117 (350)
Q Consensus       105 ~~~~~~~~~~~~~  117 (350)
                      +...| .|....|
T Consensus        94 la~sg-~p~lq~F  105 (115)
T TIGR02508        94 LAASG-DPRLQTF  105 (115)
T ss_pred             HHhCC-CHHHHHH
Confidence            66665 3444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.27  E-value=6.5  Score=30.29  Aligned_cols=59  Identities=12%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      +.-++.+.+.+.+.+++...++-.+.. +.+...-..+++.++-.|++++|..-++-.-+
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~   63 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT   63 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence            334455555566666666665555443 33444555556666666666666655554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.20  E-value=2.5  Score=21.03  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      +|..+...+...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444555555555555555555443

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.50  E-value=30  Score=32.80  Aligned_cols=194  Identities=14%  Similarity=0.080  Sum_probs=105.9

Q ss_pred             HhcCCHhHHHHHHHHHhhCCCCcc----H---HHHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 018782          125 CEANDIHSVFRVLDSMKRYNLVPN----V---FTYNCII-RKLCKNEKVEEAYQLLDEMIER----GANPDEWSYNAILA  192 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~~~~~~~~----~---~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~  192 (350)
                      ....++.+|..+..++...-..|+    .   ..++.+- ......|++++|.++.+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            345778888888877754321221    1   1233332 2334578899999988887654    12234455666667


Q ss_pred             HHhcccCHHHHHHHHHHHHhCCCCCChhHH---HHH--HHHHHHcCC--HhHHHHHHHHHHhc-----CC-CCCHHHHHH
Q 018782          193 YHCDRAEVNMALRLITRMTKENVMPDRHTY---NMV--LKLLVRVGR--FDRATEVWESMEKR-----GF-YPSVSTYSV  259 (350)
Q Consensus       193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~--~~~a~~~~~~~~~~-----~~-~p~~~~~~~  259 (350)
                      +..-.|++++|..+.....+..-.-+...+   ..+  ...+...|+  +.+....|......     +. .+-......
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            777789999999888776554222233322   222  233455663  33333333333221     00 122344555


Q ss_pred             HHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          260 MVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS--TVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       260 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      ++.++.+..+...++..-+.-.......|-..  .+..+++.....|+.++|...+.++..
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            55555544444445554444443333222112  223677888889999999988888764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.43  E-value=10  Score=27.27  Aligned_cols=53  Identities=15%  Similarity=0.151  Sum_probs=34.9

Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782          195 CDRAEVNMALRLITRMTKENVMPDRH-TYNMVLKLLVRVGRFDRATEVWESMEKRG  249 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  249 (350)
                      ...++++.+..++..+.-.  .|+.. .-..-...+...|+|.+|.++|+++.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            4577888888888887764  33322 22223345567888888888888888753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.12  E-value=17  Score=29.53  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782           84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM  140 (350)
Q Consensus        84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  140 (350)
                      .....|..+|.+.+|.++-++.+... +.+...+-.++..+...||--.+.+.++.+
T Consensus       284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            33445555555555555555555542 334445555555555555554454444444

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.97  E-value=29  Score=32.13  Aligned_cols=61  Identities=13%  Similarity=0.001  Sum_probs=37.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN-------IDEAHGMLREMRSI  108 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~  108 (350)
                      .=.++..|.++|.+++|.++.....+. .......+...+..|....+       -+....-|++....
T Consensus       114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            345777888999999999999665544 33345566667777765432       23555555555544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=85.57  E-value=3.4  Score=28.49  Aligned_cols=79  Identities=11%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             CHhhHHHHHHHHHccCChH--HHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVK--VAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      +.+-|+.--.-|.....+|  +..+-++.+.. ...|++.+....++++.+.+++..|.++|+-++.+ ..+....|-.+
T Consensus        46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~  124 (149)
T KOG4077|consen   46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYY  124 (149)
T ss_pred             cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHH
Confidence            3444544444444433222  45555555554 67888999999999999999999999999888765 33333456555


Q ss_pred             HHH
Q 018782           86 LEA   88 (350)
Q Consensus        86 ~~~   88 (350)
                      +.-
T Consensus       125 v~e  127 (149)
T KOG4077|consen  125 VKE  127 (149)
T ss_pred             HHH
Confidence            543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.42  E-value=26  Score=31.03  Aligned_cols=181  Identities=10%  Similarity=0.092  Sum_probs=127.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      .+.|.....+++..+..+..+.-+..+-.+|...|  -+...+..++.+|... ..+.-..+|+++.+..+. |+..-..
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re  137 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE  137 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence            34577778889999999999999999999999865  4677889999999988 667888999999887632 4444444


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCChhHHHHHHHH
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANP-----DEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDRHTYNMVLKL  228 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~  228 (350)
                      |..-|-+ ++.+.+...|.++...-++.     -...|.-+...  -..+.+..+.+...+... |...-...+..+-.-
T Consensus       138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~  214 (711)
T COG1747         138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK  214 (711)
T ss_pred             HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            5555544 88899999998887653321     12345555442  245677777777776554 333344566666678


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHG  263 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  263 (350)
                      |....++.+|.+++..+.+..-+ |...-..++..
T Consensus       215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~  248 (711)
T COG1747         215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN  248 (711)
T ss_pred             hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence            88888999999999988876332 44444455544

>PRK09687 putative lyase; Provisional

Probab=85.02  E-value=19  Score=29.31  Aligned_cols=236  Identities=11%  Similarity=0.006  Sum_probs=147.8

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhh
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI----DEAHGMLREMRSIGAEPDAFS  116 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  116 (350)
                      .++.......+.++...|.. .+...+..+...   ++...-...+.++...|+.    .++...+..+...  .++...
T Consensus        34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V  107 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV  107 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence            35677777788888877753 344444445443   3666666777777777763    5678888777443  355555


Q ss_pred             HHHHHHHHHhcCC-----HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782          117 YSIFIHAFCEAND-----IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL  191 (350)
Q Consensus       117 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  191 (350)
                      -...+.++...+.     ...+...+.....   .++..+-...+.++.+.++. .+...+-.+.+.   ++...-...+
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~  180 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence            5555555554432     1233344433333   34667777888888888874 566666666653   3555555566


Q ss_pred             HHHhccc-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          192 AYHCDRA-EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       192 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      .++.+.+ +.+.+...+..+..   .++..+-...+.++.+.++. .|...+-...+.+   +.  ....+.++... |.
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~~--~~~a~~ALg~i-g~  250 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---TV--GDLIIEAAGEL-GD  250 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---ch--HHHHHHHHHhc-CC
Confidence            6666543 24456666666664   35777778888888888884 5555555555542   22  33556666555 66


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782          271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                      . +|+..+..+.+..  ||..+....+.++.+
T Consensus       251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~~  279 (280)
T PRK09687        251 K-TLLPVLDTLLYKF--DDNEIITKAIDKLKR  279 (280)
T ss_pred             H-hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence            4 7899999888754  588888777777654

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=84.53  E-value=11  Score=26.10  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          272 EEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      -+..+-++.+...++-|++.+....+++|.+.+|+..|.++|+-++.+
T Consensus        66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            345566667777788889999999999999999999999999888765

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.86  E-value=36  Score=31.50  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             HHHHHHHHH-ccCChHHHHHHHHHhhhcC-CCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCCCHHH
Q 018782           13 LDQLLHALC-KRKHVKVAHQFFDNAKHEF-TPTV-----KTYSILVRGLGDVGELSEARKLFDEMLERK----CPVDILA   81 (350)
Q Consensus        13 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~   81 (350)
                      +-.+...+. ...+++.|...+++..... .++.     .....++..+.+.+... |...+++.++.-    ..+-...
T Consensus        62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~  140 (608)
T PF10345_consen   62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA  140 (608)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence            344555554 6789999999999864421 1221     22345566776666666 999998876541    1122223


Q ss_pred             HHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCHhHHHHHHHHHhhCC---------CC
Q 018782           82 HNSL-LEAMCKAGNIDEAHGMLREMRSIG---AEPDAFSYSIFIHAFC--EANDIHSVFRVLDSMKRYN---------LV  146 (350)
Q Consensus        82 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~  146 (350)
                      |..+ +..+...+++..|.+.++.+...-   ..|....+..++.+..  +.+..+++.+..+.+....         ..
T Consensus       141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~  220 (608)
T PF10345_consen  141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI  220 (608)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence            3333 233333479999999999887532   2333444445555443  3455566666666553211         23


Q ss_pred             ccHHHHHHHHHHH--HccCCHHHHHHHHHHH
Q 018782          147 PNVFTYNCIIRKL--CKNEKVEEAYQLLDEM  175 (350)
Q Consensus       147 ~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~  175 (350)
                      |...+|..+++.+  ...|++..+...++++
T Consensus       221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566777777654  4577777776666555

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=83.78  E-value=14  Score=26.54  Aligned_cols=89  Identities=10%  Similarity=0.082  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKC-----PVDILAHNSLLEAMCKAGN-IDEAHGMLREMRSIGAEPDAFSYS  118 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~  118 (350)
                      ...+.++...+..+++.....+++.+.....     ..+...|+.++.+...... ---+..+|..+.+.+.++++.-|.
T Consensus        40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~  119 (145)
T PF13762_consen   40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS  119 (145)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            3456677777777777777777777643211     2367788899988876665 456778888888877888999999


Q ss_pred             HHHHHHHhcCCHhHH
Q 018782          119 IFIHAFCEANDIHSV  133 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a  133 (350)
                      .++.++.+....+..
T Consensus       120 ~li~~~l~g~~~~~~  134 (145)
T PF13762_consen  120 CLIKAALRGYFHDSL  134 (145)
T ss_pred             HHHHHHHcCCCCcch
Confidence            999988776444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=83.61  E-value=16  Score=27.25  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      +++|...|+....  ..|+..+|+.-+....      +|-++..++.+.
T Consensus        96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~  136 (186)
T PF06552_consen   96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence            3444444554444  3456666665555442      344444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=83.21  E-value=2.3  Score=20.11  Aligned_cols=26  Identities=23%  Similarity=0.082  Sum_probs=14.2

Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          293 VEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       293 ~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      +..+...+...|+++.|...+++..+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            44455555555566666655555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.11  E-value=21  Score=28.12  Aligned_cols=119  Identities=13%  Similarity=-0.020  Sum_probs=71.8

Q ss_pred             HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 018782           19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD-ILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~   97 (350)
                      -|.....++.|..-|.+.....|..+..|+.-+.++.+..+++.+..--.+.++.  .|+ +.....+..+......+++
T Consensus        19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence            3444556777777777766555555567777777888888888877777766664  233 3445556667777788888


Q ss_pred             HHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782           98 AHGMLREMRSI----GAEPDAFSYSIFIHAFCEANDIHSVFRVLDS  139 (350)
Q Consensus        98 a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  139 (350)
                      |+..+.+..+.    .+.+-......|..+--..-...+..++.+.
T Consensus        97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~  142 (284)
T KOG4642|consen   97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE  142 (284)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence            88888877432    2333333444444443333333444444433

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.07  E-value=22  Score=28.47  Aligned_cols=208  Identities=10%  Similarity=0.108  Sum_probs=124.5

Q ss_pred             CCCCCHhhHHHHHHH-HHhcCCHhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C
Q 018782          109 GAEPDAFSYSIFIHA-FCEANDIHSVFRVLDSMKRYNLVPNV---FTYNCIIRKLCKNEKVEEAYQLLDEMIER-----G  179 (350)
Q Consensus       109 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~  179 (350)
                      +-+||+..=+..-.+ -.+..+.++|+.-|++..+.......   .+.-.++....+.|++++..+.+.++...     .
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            445665543322211 12345788999999988764322233   34456788899999999999999988642     1


Q ss_pred             CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC----
Q 018782          180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDR----HTYNMVLKLLVRVGRFDRATEVWESMEKRGF----  250 (350)
Q Consensus       180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----  250 (350)
                      ..-+..+.++++.......+.+....+++.-.+. .-..+.    .|-+.|...|...+++.+..++++++...--    
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence            1235566788888777777777777777664332 001122    2335677888888999999999888864311    


Q ss_pred             CCC-------HHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHH----HHHcCCChhHHHHHHHHhh
Q 018782          251 YPS-------VSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRN----RLVGLGFLDIIEILADKME  317 (350)
Q Consensus       251 ~p~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~  317 (350)
                      ..|       ...|..=|..|... .+-.....++++...- .--|.+.....+-.    ...+.|++++|-.-|=+..
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~q-KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF  258 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQ-KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF  258 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhh-cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence            111       23556666666655 5556666667665432 23455555544322    2345566666655544443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=82.69  E-value=29  Score=29.55  Aligned_cols=125  Identities=10%  Similarity=0.010  Sum_probs=69.0

Q ss_pred             CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hcccCHHHHHHHHHHHHhCCCCCChhHH
Q 018782          146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH---CDRAEVNMALRLITRMTKENVMPDRHTY  222 (350)
Q Consensus       146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~  222 (350)
                      +-.+.++-.+-..+...|+.+.|.+++++..-.-    ..++......+   ...|...         ......-|...|
T Consensus        37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~ff  103 (360)
T PF04910_consen   37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQFF  103 (360)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc---------cCCccccchHHH
Confidence            3456666667777778888888777777754210    00000000000   0000000         000111233333


Q ss_pred             HH---HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782          223 NM---VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD  283 (350)
Q Consensus       223 ~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  283 (350)
                      .+   .+..+.+.|-+..|.++.+-+...+..-|+.....+|..|+.++++++-.+++.+....
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            33   34566777888888888888877655546666666777777777777777777776554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK09687 putative lyase; Provisional

Probab=82.31  E-value=26  Score=28.63  Aligned_cols=221  Identities=12%  Similarity=0.057  Sum_probs=135.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH----hHHHHHHHHHhhCCCCccHHHH
Q 018782           77 VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI----HSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      ++.......+.++...|. ..+...+..+...   +|...-...+.++...|+.    .++...+..+...  .++..+-
T Consensus        35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR  108 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR  108 (280)
T ss_pred             CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence            366666667777776665 4444445555443   4555555666677777763    4677777766443  3677777


Q ss_pred             HHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 018782          153 NCIIRKLCKNEKV-----EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLK  227 (350)
Q Consensus       153 ~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  227 (350)
                      ...+.++...+..     ..+...+.....   .++..+-...+.++...++ +.+...+-.+.+.   ++...-...+.
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~  181 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF  181 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence            7777777665432     233444433333   3366666677788877776 4566666666653   45555566666


Q ss_pred             HHHHcC-CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782          228 LLVRVG-RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       228 ~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  306 (350)
                      ++.+.+ +-..+...+..+...   ++...-...+.++.+. |+ ..++..+-...+.+   +  .....+.++...|..
T Consensus       182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~-~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALR-KD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHcc-CC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence            666543 244666666666643   4666666666676655 66 46666666666554   2  345678888888885


Q ss_pred             hHHHHHHHHhhccCC
Q 018782          307 DIIEILADKMERSTS  321 (350)
Q Consensus       307 ~~a~~~~~~~~~~~~  321 (350)
                       +|...+.++....+
T Consensus       252 -~a~p~L~~l~~~~~  265 (280)
T PRK09687        252 -TLLPVLDTLLYKFD  265 (280)
T ss_pred             -hHHHHHHHHHhhCC
Confidence             68888888876544

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.24  E-value=31  Score=29.51  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      ..+.-+...|..+|+++.|++.|.+..+--  .......|..+|..-...|+|.....+..+..+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            446677778888888888888888755431  1123455666677777778877777776666543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.21  E-value=9.6  Score=28.98  Aligned_cols=63  Identities=14%  Similarity=0.028  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLER-KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .+...+.......+.+......+...+. ...|++.+|..++..+...|+.++|.+...++...
T Consensus       110 ~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  110 YYAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3334344444555544444433333221 23678999999999999999999999999998875

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.00  E-value=50  Score=31.77  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      |..|+..|...|+.++|+++|....+
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhc
Confidence            56677777777777777777777765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=81.85  E-value=57  Score=32.28  Aligned_cols=83  Identities=18%  Similarity=0.108  Sum_probs=43.4

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                      .+.+|..+|+|.+|..+..++...   -+..  +-..|...+... +++-+|-++..+..+.        ....+..+++
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~-~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ-RKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc-ccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence            345566666666666666555421   1111  113344443333 6666666666655332        1223345566


Q ss_pred             CCChhHHHHHHHHhhcc
Q 018782          303 LGFLDIIEILADKMERS  319 (350)
Q Consensus       303 ~g~~~~a~~~~~~~~~~  319 (350)
                      ...|++|.++.....+.
T Consensus      1039 a~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKAKRD 1055 (1265)
T ss_pred             HhHHHHHHHHHHhcccc
Confidence            66788888777666543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=81.40  E-value=6.4  Score=27.66  Aligned_cols=27  Identities=11%  Similarity=-0.103  Sum_probs=12.3

Q ss_pred             HHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782          296 LRNRLVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       296 l~~~~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      |.-++.+.++++.+.++++.+.+..++
T Consensus        77 LAvg~yRlkeY~~s~~yvd~ll~~e~~  103 (149)
T KOG3364|consen   77 LAVGHYRLKEYSKSLRYVDALLETEPN  103 (149)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence            333444444444444444444444333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.04  E-value=22  Score=26.99  Aligned_cols=89  Identities=15%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH-----HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782          226 LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM-----VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL  300 (350)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  300 (350)
                      ...+...|++++|...++.....   |....+..+     -+... ..|.+++|+..++.....++  .+.....-.+.+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil  169 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESW--AAIVAELRGDIL  169 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence            44566667777777766665543   222222222     22222 23667777777666554432  233334445666


Q ss_pred             HcCCChhHHHHHHHHhhccC
Q 018782          301 VGLGFLDIIEILADKMERST  320 (350)
Q Consensus       301 ~~~g~~~~a~~~~~~~~~~~  320 (350)
                      ...|+-++|..-|++....+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         170 LAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHcCchHHHHHHHHHHHHcc
Confidence            67777777777777766654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=80.36  E-value=44  Score=30.11  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLG-DVGELSEARKLFDEMLER-KCP-VDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      .+.|..+.+..+|++...++|.+...|......+. ..|+.+...+.|+..++. |.. .+...|...+..-..++++..
T Consensus        90 ~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~  169 (577)
T KOG1258|consen   90 YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR  169 (577)
T ss_pred             HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence            46788888999999988888888888888777665 457778888888887754 221 255677777777778888888


Q ss_pred             HHHHHHHHHhC
Q 018782           98 AHGMLREMRSI  108 (350)
Q Consensus        98 a~~~~~~~~~~  108 (350)
                      ...+|++.++.
T Consensus       170 v~~iyeRilei  180 (577)
T KOG1258|consen  170 VANIYERILEI  180 (577)
T ss_pred             HHHHHHHHHhh
Confidence            88888887653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=80.01  E-value=6.9  Score=22.36  Aligned_cols=31  Identities=16%  Similarity=0.014  Sum_probs=16.1

Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      .+.-++.+.|++++|.+..+.+.+..|.+.+
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            3444555666666666666666555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-14
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 73.7 bits (179), Expect = 2e-14
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 4/194 (2%)

Query: 84  SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI---HSVFRVLDSM 140
            LL+      ++D       +               F       + +   H +  V    
Sbjct: 97  RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156

Query: 141 KRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR-AE 199
           ++   +  +  YN ++    +    +E   +L  + + G  PD  SY A L     +  +
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216

Query: 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSV 259
                R + +M++E +        ++L    R        +V  +       P     S 
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSK 276

Query: 260 MVHGLCKKKGKLEE 273
           ++  +  K G++  
Sbjct: 277 LLRDVYAKDGRVSY 290

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 73.3 bits (178), Expect = 2e-14
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITR---MTKENVMP 217
               ++       +  +   +  +    A         ++ +A  L+       ++  + 
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 218 DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKY 277
               YN V+    R G F     V   ++  G  P + +Y+  +  + ++        + 
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 278 FEMMVDEGIPPY 289
            E M  EG+   
Sbjct: 224 LEQMSQEGLKLQ 235

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 72.2 bits (175), Expect = 5e-14
 Identities = 25/218 (11%), Positives = 73/218 (33%), Gaps = 5/218 (2%)

Query: 7   KPSIYDLDQLLHALCKRKHVKVAHQFFD-NAKHEFTPTVKTYSILVRGLGDVGELSEARK 65
            P    L +LL     +  + V       +++ + +   +      +      +L  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 66  LFD---EMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH 122
           L        +++  + +  +N+++    + G   E   +L  ++  G  PD  SY+  + 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 123 AFCEA-NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN 181
                  D  ++ R L+ M +  L         ++ +  +   ++  +++          
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

Query: 182 PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR 219
           P   + + +L     +       +L   +     + ++
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 12/133 (9%)

Query: 159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR-AEVNMALRLITRMTKENVMP 217
                   +A + L+     G+        A++    +R  +V      I ++      P
Sbjct: 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDV------IDQVKSAGKWP 165

Query: 218 DRH----TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK-GKLE 272
           D+                +  F  A              + +        + ++  G   
Sbjct: 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225

Query: 273 EACKYFEMMVDEG 285
            A    E +    
Sbjct: 226 AAVALLEWLQTTH 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 55/221 (24%)

Query: 39  EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC---PVDILAHNSLLEAMCKAGNI 95
           +F     T  I +          E + L  + L+ +    P ++L  N    ++      
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 96  D-------------EAHGMLREMRSIGA-EPDAF-----SYSIF-------IHAFC---E 126
           D             +    + E  S+   EP  +       S+F                
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 127 ANDIHSVFRVLDSMKRYNLV-----PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN 181
                 V  V++ + +Y+LV      +  +   I  +L    K+E  Y L   +++    
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV--KLENEYALHRSIVDHYNI 455

Query: 182 PDEWSYNAI------------LAYH---CDRAEVNMALRLI 207
           P  +  + +            + +H    +  E     R++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 29/273 (10%)

Query: 36  AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLE-----RKCPVDILAHNSLLEAMC 90
               F   +   S+L   L   GEL+ +  L  +  +           + +     E + 
Sbjct: 45  PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104

Query: 91  KAGNIDEAHGMLREMRSIGAEPD-------AFSYSIFIHAFCEANDI----HSVFRVLDS 139
             G +  A     +   +  E          F   I          +     S    ++ 
Sbjct: 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164

Query: 140 MKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE---MIERGANPDEWSYNA------I 190
           +  Y     +     +I+       ++ A   L+    ++  G    +W  NA       
Sbjct: 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224

Query: 191 LAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA----TEVWESME 246
                D+A     LR   +    N    +  +  + +  + +G F+ A     E+ E+  
Sbjct: 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284

Query: 247 KRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE 279
                  ++   ++++ L  + G+  +A +   
Sbjct: 285 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.75
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.68
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.67
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.6
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.44
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.29
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.28
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.24
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.22
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.22
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.2
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.01
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.01
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.97
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.97
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.95
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.94
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.89
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.88
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.85
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.84
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.82
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.79
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.77
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.61
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.53
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.46
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.43
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.24
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.17
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.16
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.89
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.86
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.36
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.17
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.11
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.08
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.06
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.59
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.57
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.21
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.1
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.1
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.06
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.02
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.85
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.81
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.68
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.48
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.12
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.11
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.71
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.28
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.21
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.59
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.44
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.65
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.57
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.28
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.04
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.83
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	87.75
2p58_C	116	Putative type III secretion protein YSCG; type III	87.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.61
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	85.61
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	84.05
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.36

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.9e-34  Score=247.83  Aligned_cols=185  Identities=17%  Similarity=0.278  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHhh
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN---------IDEAHGMLREMRSIGAEPDAFS  116 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  116 (350)
                      .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.         ++.|.++|++|.+.|+.||..|
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            3555555566666666666666666555555666666666655554433         3444455555555455555555


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD  196 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  196 (350)
                      |+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            55555555555555555555555544444455555555555555555555555555555444445555555555555555


Q ss_pred             ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 018782          197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLV  230 (350)
Q Consensus       197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  230 (350)
                      .|++++|.+++++|.+.+..|+..||+.++..|+
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            5555555555555544444444444444444444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.3e-33  Score=243.83  Aligned_cols=197  Identities=17%  Similarity=0.257  Sum_probs=175.2

Q ss_pred             CCCCCCcCHh-hHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCC---------HHHHHHHHHHH
Q 018782            2 VEFGIKPSIY-DLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGE---------LSEARKLFDEM   70 (350)
Q Consensus         2 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~   70 (350)
                      .+.++.+++. .++.+|++|++.|++++|.++|++|.. +.+|+..+|+.||.+|++.+.         ++.|.++|++|
T Consensus        17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M   96 (501)
T 4g26_A           17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM   96 (501)
T ss_dssp             -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred             HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence            4566666655 478889999999999999999999977 899999999999999987664         68899999999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH
Q 018782           71 LERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF  150 (350)
Q Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  150 (350)
                      .+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus        97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A           97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 018782          151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA  198 (350)
Q Consensus       151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  198 (350)
                      +|++||.+|++.|+.++|.+++++|.+.+..|+..||+.++..++..+
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-30  Score=231.82  Aligned_cols=310  Identities=10%  Similarity=-0.002  Sum_probs=176.4

Q ss_pred             CCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHH---------------------------------
Q 018782            4 FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSIL---------------------------------   50 (350)
Q Consensus         4 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l---------------------------------   50 (350)
                      .|.+++..+|+.++..|.+.|++++|.++|+++....|.+...+..+                                 
T Consensus       194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (597)
T 2xpi_A          194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS  273 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence            35667788999999999999999999999999866444444443333                                 


Q ss_pred             -----HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           51 -----VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        51 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                           +..|.+.|++++|.++|+++.+.  +++..+++.++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  350 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH  350 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence                 33344556666666666666554  3566666666666666666666666666666543 224445555555555


Q ss_pred             hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782          126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR  205 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  205 (350)
                      +.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..++..+.+.|++++|.+
T Consensus       351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  428 (597)
T 2xpi_A          351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAIS  428 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555554432 334555555555555555555555555555544222 44455555555555555555555


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-
Q 018782          206 LITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-  284 (350)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-  284 (350)
                      +|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. ..+..+|..+...+... |++++|.++|+++.+. 
T Consensus       429 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          429 AYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhh
Confidence            5555554432 344555555555555555555555555555432 12444555555554443 5555555555555443 


Q ss_pred             ---CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          285 ---GIPPY--SSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       285 ---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                         +..|+  ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus       506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence               33343  44555555555555555555555555554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-30  Score=230.56  Aligned_cols=333  Identities=10%  Similarity=0.009  Sum_probs=255.8

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------------
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-------------   73 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------   73 (350)
                      .|+..++..++.+|...|++++|..+|+.+.. .++++.+++.++.+|.+.|++++|.++|+++...             
T Consensus       114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  192 (597)
T 2xpi_A          114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ  192 (597)
T ss_dssp             HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred             CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence            35555666666666666666666666665533 2455566666666666666666666666532211             


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------------------------------------
Q 018782           74 --KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-----------------------------------------  110 (350)
Q Consensus        74 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------  110 (350)
                        +.+++..+|+.++.+|.+.|++++|+++|+++.+.+.                                         
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  272 (597)
T 2xpi_A          193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR  272 (597)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence              1122355666666666666666666666665543221                                         


Q ss_pred             -----------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782          111 -----------------------------EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus       111 -----------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                                                   +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+
T Consensus       273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  351 (597)
T 2xpi_A          273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE  351 (597)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence                                         3678899999999999999999999999998765 4578899999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      .|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus       352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  429 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA  429 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999764 3478899999999999999999999999998854 34678999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc--
Q 018782          242 WESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS--  319 (350)
Q Consensus       242 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--  319 (350)
                      |+++.+.+ ..+..++..+..++... |++++|.++|+++.+.. +.++.+|..++..|.+.|++++|.++++++.+.  
T Consensus       430 ~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  506 (597)
T 2xpi_A          430 YTTAARLF-QGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK  506 (597)
T ss_dssp             HHHHHHTT-TTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-ccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            99999763 34778899999988876 99999999999999876 678999999999999999999999999999775  


Q ss_pred             ----CCCcHHHHHHHhcccccccccccchhh
Q 018782          320 ----TSCTIQELANAMRGKTGFRKSRSEETE  346 (350)
Q Consensus       320 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~  346 (350)
                          ++......+..+...+...+..+++.+
T Consensus       507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  537 (597)
T 2xpi_A          507 KTQSNEKPWAATWANLGHAYRKLKMYDAAID  537 (597)
T ss_dssp             HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence                233225566777777766666665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=5.9e-27  Score=198.50  Aligned_cols=307  Identities=14%  Similarity=0.114  Sum_probs=155.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      +..+...+...|++++|...++......|.+..+|..+..++.+.|++++|...|+++.+.. |.+..+|..+..++...
T Consensus        36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  114 (388)
T 1w3b_A           36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAA  114 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHc
Confidence            33344444455555555555555544444555555555555555555555555555554432 12344455555555555


Q ss_pred             CCHHHHHHHHHHHHhCCC---------------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGA---------------------------------EPDAFSYSIFIHAFCEANDIHSVFRVLDS  139 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  139 (350)
                      |++++|.+.|+++.+..+                                 +.+..+|..+...+...|++++|...|++
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  194 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK  194 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555555555444321                                 12233444444444444444444444444


Q ss_pred             HhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh
Q 018782          140 MKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR  219 (350)
Q Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  219 (350)
                      +.+.+ +.+...+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...++++.+.++ .+.
T Consensus       195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~  271 (388)
T 1w3b_A          195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFP  271 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCH
T ss_pred             HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH
Confidence            44432 223344444444444555555555555544444222 344555555555556666666666666555432 234


Q ss_pred             hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782          220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR  299 (350)
Q Consensus       220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  299 (350)
                      .+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+... |++++|...++++.+.. |.+..++..+..+
T Consensus       272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  348 (388)
T 1w3b_A          272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVF-PEFAAAHSNLASV  348 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            455555566666666666666666655441 23445555555554444 66666666666655543 4455556666666


Q ss_pred             HHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          300 LVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      +.+.|++++|...++++.+..|.....
T Consensus       349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a  375 (388)
T 1w3b_A          349 LQQQGKLQEALMHYKEAIRISPTFADA  375 (388)
T ss_dssp             HHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence            666666666666666665555544433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=5e-26  Score=192.80  Aligned_cols=303  Identities=14%  Similarity=0.075  Sum_probs=228.0

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      +...+.+.|++++|.+.++.+....|.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            34567889999999999999988788889999999999999999999999999998874 55889999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999853 3355678889999999999999988888887754 334556666777777777777777777777


Q ss_pred             HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC--------------------------------C-CChhHH
Q 018782          176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV--------------------------------M-PDRHTY  222 (350)
Q Consensus       176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~-~~~~~~  222 (350)
                      .+..+. +..+|..+...+...|++++|...|+++.+.++                                . .+..++
T Consensus       162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (388)
T 1w3b_A          162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence            766432 456666666666666766666666666554321                                1 234556


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782          223 NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG  302 (350)
Q Consensus       223 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (350)
                      ..+..++...|++++|...|+++.+... .+...+..+...+... |++++|...|+++.+.. |.+..++..+...+.+
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK-GSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence            6667777777777777777777776421 2355666666666655 77777777777777764 6677777777777777


Q ss_pred             CCChhHHHHHHHHhhccCCCcHH
Q 018782          303 LGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       303 ~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      .|++++|...++++.+..+....
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~  340 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHH
Confidence            88888888888777776555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=1.5e-25  Score=193.66  Aligned_cols=312  Identities=15%  Similarity=0.084  Sum_probs=267.3

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      +.++..+..+...+.+.|++++|..+|+.+....|.+..++..+..++...|++++|...|+++.+.+. .+..++..+.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~  101 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG  101 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence            345667888899999999999999999999887788999999999999999999999999999998854 3788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHH------------HHHHHhcCCHhHHHHHHHHHhhCCCCccHHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDA---FSYSIF------------IHAFCEANDIHSVFRVLDSMKRYNLVPNVFT  151 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  151 (350)
                      .++...|++++|...|+++.+.. +.+.   ..+..+            ...+...|++++|...|+++.+.. +.+..+
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            99999999999999999999864 2233   455544            445889999999999999998765 557889


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHH------
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMV------  225 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------  225 (350)
                      +..+..+|.+.|++++|...++++.+.... +..++..+...+...|++++|...++.+..... .+...+..+      
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~  257 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL  257 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence            999999999999999999999999887533 788999999999999999999999999987542 244444444      


Q ss_pred             ------HHHHHHcCCHhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782          226 ------LKLLVRVGRFDRATEVWESMEKRGFYPS-----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE  294 (350)
Q Consensus       226 ------~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  294 (350)
                            ...+...|++++|...|+++.+.  .|+     ...+..+...+... |++++|...++++.+.. +.+..++.
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~-p~~~~~~~  333 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQME-PDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-cccHHHHH
Confidence                  78999999999999999999975  454     34667777777666 99999999999998875 66899999


Q ss_pred             HHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782          295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQEL  327 (350)
Q Consensus       295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  327 (350)
                      .++.+|...|++++|...++++.+..+......
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  366 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR  366 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence            999999999999999999999998877765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=7.5e-23  Score=171.11  Aligned_cols=310  Identities=15%  Similarity=0.090  Sum_probs=261.3

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      |+..+..+...+...|++++|...|+.+....|.++.++..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            466788888999999999999999999988788899999999999999999999999999999874 3378899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHH------------HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIF------------IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +...|++++|...|+++.+....  .+...+..+            ...+...|++++|..+++++.+.. +.+..++..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            99999999999999999986320  234444444            578889999999999999998765 457888999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH-----------
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN-----------  223 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------  223 (350)
                      +..++...|++++|...++++.+..+. +..++..+...+...|++++|...++...+... .+...+.           
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHH
Confidence            999999999999999999999987543 788899999999999999999999999988643 2333333           


Q ss_pred             -HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782          224 -MVLKLLVRVGRFDRATEVWESMEKRGFYPSVS-----TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLR  297 (350)
Q Consensus       224 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  297 (350)
                       .+...+...|++++|...++++.+..  |+..     .+..+...+... |++++|...++++.+.. +.+..++..+.
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  313 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKD-EKPVEAIRICSEVLQME-PDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence             23667899999999999999999763  4422     233355555555 99999999999999875 66899999999


Q ss_pred             HHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          298 NRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       298 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      .++...|++++|...++++.+.+|.....
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  342 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQQI  342 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence            99999999999999999999988776553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=1.8e-22  Score=174.22  Aligned_cols=300  Identities=12%  Similarity=0.029  Sum_probs=250.8

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH---HHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI---LAHN   83 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~   83 (350)
                      +.+..++..+..++...|++++|...|+.+....|.+..++..++.++...|++++|.+.|+++.+.... +.   ..+.
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~  135 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQS  135 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHH
Confidence            4467888999999999999999999999998877888999999999999999999999999999987432 44   5555


Q ss_pred             HH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHH
Q 018782           84 SL------------LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFT  151 (350)
Q Consensus        84 ~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  151 (350)
                      .+            ...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|..+|+++.+.. +.+..+
T Consensus       136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  213 (450)
T 2y4t_A          136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA  213 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            55            445889999999999999999864 4577889999999999999999999999998764 457889


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHhcccCHHHHHHHHHHHHhCCCCCC-
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAI------------LAYHCDRAEVNMALRLITRMTKENVMPD-  218 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-  218 (350)
                      +..+..++...|++++|...++++.+.... +...+..+            ...+...|++++|...++.+.+..  |+ 
T Consensus       214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~  290 (450)
T 2y4t_A          214 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSI  290 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc
Confidence            999999999999999999999999987433 44555444            788899999999999999998853  44 


Q ss_pred             ----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782          219 ----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE  294 (350)
Q Consensus       219 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  294 (350)
                          ...+..+..++.+.|++++|...++++.+.. +.+...+..+..++... |++++|...++++.+.. |.+...+.
T Consensus       291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~  367 (450)
T 2y4t_A          291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIE-EMYDEAIQDYETAQEHN-ENDQQIRE  367 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTS-SSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC-cchHHHHH
Confidence                3478889999999999999999999998752 23677888888887766 99999999999999875 55677777


Q ss_pred             HHHHH------------HHcCC-----ChhHHHHHHHH
Q 018782          295 MLRNR------------LVGLG-----FLDIIEILADK  315 (350)
Q Consensus       295 ~l~~~------------~~~~g-----~~~~a~~~~~~  315 (350)
                      .+..+            |...|     +.+++.+.+++
T Consensus       368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence            77633            44445     56777888876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-22  Score=178.04  Aligned_cols=313  Identities=11%  Similarity=0.023  Sum_probs=204.0

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-----------
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-----------   76 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------   76 (350)
                      |++..+..+..++...|++++|...++.+....|.+..++..++.++...|++++|...|+++.+.+..           
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  116 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER  116 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence            677788888888888888888888888887766777888888888888888888888888777554320           


Q ss_pred             --------------------------------------------------------------------------------
Q 018782           77 --------------------------------------------------------------------------------   76 (350)
Q Consensus        77 --------------------------------------------------------------------------------   76 (350)
                                                                                                      
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (514)
T 2gw1_A          117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN  196 (514)
T ss_dssp             HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782           77 --------------------------------------VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS  118 (350)
Q Consensus        77 --------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  118 (350)
                                                            .+..++..+..++...|++++|...++++.+..  |+...+.
T Consensus       197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~  274 (514)
T 2gw1_A          197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI  274 (514)
T ss_dssp             HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence                                                  011223333344444455555555555544432  2244455


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 018782          119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA  198 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  198 (350)
                      .+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.... +...+..+...+...|
T Consensus       275 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  352 (514)
T 2gw1_A          275 YMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYREN  352 (514)
T ss_dssp             HHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcC
Confidence            55555555555555555555554433 234555666666666667777777777766665433 4556666677777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHhh---ccCc
Q 018782          199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-PS----VSTYSVMVHGLCK---KKGK  270 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~---~~~~  270 (350)
                      ++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.... ++    ...+..+...+..   . |+
T Consensus       353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  430 (514)
T 2gw1_A          353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-EN  430 (514)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-TH
T ss_pred             CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CC
Confidence            7777777777776643 234566777777777788888888877777653111 11    2256666666655   4 78


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782          271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL  327 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  327 (350)
                      +++|...++++.... +.+..++..+..++.+.|++++|...+++..+.++..+...
T Consensus       431 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          431 FIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence            888888888877765 55677777888888888888888888888877766655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=4.1e-22  Score=164.73  Aligned_cols=293  Identities=11%  Similarity=0.054  Sum_probs=175.2

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      .+.++..+..+...+...|++++|.++|+.+....|.+...+..++.++...|++++|...++++.+... .+...+..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence            3445555666666666667777777777766665566666666666666666777777777766666532 255666666


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782           86 LEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        86 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      ...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            66666666 6666777776666543 2344556666666666677777776666665543 2334555556666666666


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC--------CCCChhHHHHHHHHHHHcCCHh
Q 018782          165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN--------VMPDRHTYNMVLKLLVRVGRFD  236 (350)
Q Consensus       165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~  236 (350)
                      +++|...++++.+.... +...+..+...+...|++++|...++.+....        .+....++..+..++...|+++
T Consensus       175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            66666666666655332 45566666666666666666666666655431        0222345666666666666666


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC
Q 018782          237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL-VGLGF  305 (350)
Q Consensus       237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~  305 (350)
                      +|...++++.+... .+...+..+...+... |++++|...++++.+.. |.+...+..+..++ ...|+
T Consensus       254 ~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          254 EALDYHRQALVLIP-QNASTYSAIGYIHSLM-GNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHHHHST-TCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhhCc-cchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence            66666666665421 1344445555554444 66666666666666554 44555666666555 33444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.5e-22  Score=172.88  Aligned_cols=306  Identities=13%  Similarity=0.018  Sum_probs=254.4

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ...+......+.+.|++++|+..|+++.... |++.+|..+..++...|++++|...++++.+.+ +.+..++..+..++
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            4567778889999999999999999998754 589999999999999999999999999999875 44788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCC--------------------------------------------------------
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPD--------------------------------------------------------  113 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------------------------------  113 (350)
                      ...|++++|...|+++.+.+...+                                                        
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            999999999999999987642110                                                        


Q ss_pred             ----------------------HhhHHHHHHHHHh---cCCHhHHHHHHHHHhh-----CCC--------CccHHHHHHH
Q 018782          114 ----------------------AFSYSIFIHAFCE---ANDIHSVFRVLDSMKR-----YNL--------VPNVFTYNCI  155 (350)
Q Consensus       114 ----------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l  155 (350)
                                            ...+......+..   .|++++|..+|+++.+     ..-        +.+..++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                                  2222333333333   7999999999999877     311        2345678888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRF  235 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  235 (350)
                      ...+...|++++|...++++.+....  ...+..+...+...|++++|...++.+..... .+...+..+..++...|++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999988544  88888999999999999999999999988653 4677899999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782          236 DRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADK  315 (350)
Q Consensus       236 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  315 (350)
                      ++|...++++.+.... +...+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  397 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRE-NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL  397 (514)
T ss_dssp             THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999976332 456677777766655 99999999999999875 66788999999999999999999999999


Q ss_pred             hhccCCCc
Q 018782          316 MERSTSCT  323 (350)
Q Consensus       316 ~~~~~~~~  323 (350)
                      +.+..+..
T Consensus       398 a~~~~~~~  405 (514)
T 2gw1_A          398 AIELENKL  405 (514)
T ss_dssp             HHHHHHTS
T ss_pred             HHHhhhcc
Confidence            87654443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.8e-21  Score=157.79  Aligned_cols=283  Identities=9%  Similarity=-0.034  Sum_probs=241.8

Q ss_pred             cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782           39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS  118 (350)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  118 (350)
                      ..+.+...+..++..+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~   94 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF   94 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence            4567788899999999999999999999999998743 366777778899999999999999999999864 34677888


Q ss_pred             HHHHHHHhcC-CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782          119 IFIHAFCEAN-DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR  197 (350)
Q Consensus       119 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  197 (350)
                      .+...+...| ++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence            9999999999 9999999999998865 446788999999999999999999999999987544 566777789999999


Q ss_pred             cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHhhccC
Q 018782          198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG--------FYPSVSTYSVMVHGLCKKKG  269 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~ll~~~~~~~~  269 (350)
                      |++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..        .......+..+...+... |
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g  250 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-K  250 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-T
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-c
Confidence            99999999999999875 3467889999999999999999999999988641        123356777777777766 9


Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782          270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA  328 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  328 (350)
                      ++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..+..+.......
T Consensus       251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred             CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence            9999999999999876 668899999999999999999999999999998877765544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=3.6e-21  Score=169.84  Aligned_cols=238  Identities=11%  Similarity=0.067  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                      +..+...+...|++++|...++++.+.  .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++..
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  322 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI  322 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence            333444455555566666666665553  2335555555666666666666666666665543 3345566666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782          162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      .|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            66666666666666655432 44556666666666666666666666666543 23445666666666677777777777


Q ss_pred             HHHHHhcCC-----CCCHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782          242 WESMEKRGF-----YPSVSTYSVMVHGLCKKK----------GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       242 ~~~~~~~~~-----~p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  306 (350)
                      |+++.+...     ......+......+ ...          |++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~  478 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI  478 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence            766654310     00111111111222 223          77778888888777765 56778888888888888888


Q ss_pred             hHHHHHHHHhhccCCCcHHH
Q 018782          307 DIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       307 ~~a~~~~~~~~~~~~~~~~~  326 (350)
                      ++|...+++..+..+.....
T Consensus       479 ~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          479 DEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHHHHHHHHHHHHC--CHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHH
Confidence            88888888888776665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.6e-19  Score=150.84  Aligned_cols=289  Identities=10%  Similarity=-0.001  Sum_probs=238.3

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNS   84 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~   84 (350)
                      +.++..+..+...+...|++++|...|+.+....|.+...+..+..++...|++++|...|+++.+....  .+...+..
T Consensus        34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            3456788889999999999999999999998877888999999999999999999999999999987430  24555555


Q ss_pred             H------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782           85 L------------LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        85 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      +            ...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  191 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF  191 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            5            578899999999999999999864 4577889999999999999999999999998875 5678899


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHhcccCHHHHHHHHHHHHhCCCCCCh-
Q 018782          153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNA------------ILAYHCDRAEVNMALRLITRMTKENVMPDR-  219 (350)
Q Consensus       153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  219 (350)
                      ..+...+...|++++|...+++..+.... +...+..            +...+...|++++|...++.+.+.... +. 
T Consensus       192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~  269 (359)
T 3ieg_A          192 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE  269 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence            99999999999999999999999987543 4443332            256688999999999999999886432 33 


Q ss_pred             ---hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782          220 ---HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML  296 (350)
Q Consensus       220 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  296 (350)
                         ..+..+..++...|++++|...+++..+.. +.+...+..+...+... |++++|...|+++.+.. |.+...+..+
T Consensus       270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~-p~~~~~~~~l  346 (359)
T 3ieg_A          270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE-EMYDEAIQDYEAAQEHN-ENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence               235567889999999999999999999862 23667777777777666 99999999999999886 5667777777


Q ss_pred             HHHHHc
Q 018782          297 RNRLVG  302 (350)
Q Consensus       297 ~~~~~~  302 (350)
                      ..+...
T Consensus       347 ~~~~~~  352 (359)
T 3ieg_A          347 EKAQRL  352 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=7.9e-21  Score=159.58  Aligned_cols=292  Identities=13%  Similarity=0.019  Sum_probs=229.1

Q ss_pred             HHHccCChHHHHH-HHHHhhhcCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782           19 ALCKRKHVKVAHQ-FFDNAKHEFTP----TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG   93 (350)
Q Consensus        19 ~~~~~g~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (350)
                      .+...|++++|.. .|++.....+.    +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3445678888888 88876442222    35668899999999999999999999999874 447889999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH---------------HHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC---------------IIRK  158 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~  158 (350)
                      ++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..               .+..
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            9999999999999864 4577889999999999999999999999998764 222222221               2333


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  237 (350)
                      +...|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.... +.+...+..+..++...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence            448899999999999999875332 57889999999999999999999999998864 3467889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHcCCCh
Q 018782          238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY-----------SSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~  306 (350)
                      |...|+++.+.. +.+...+..+...+... |++++|...|+++.... +.+           ..+|..+..++...|++
T Consensus       270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          270 AVAAYRRALELQ-PGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            999999998763 23567777777777766 99999999999988654 222           78999999999999999


Q ss_pred             hHHHHHHHHhh
Q 018782          307 DIIEILADKME  317 (350)
Q Consensus       307 ~~a~~~~~~~~  317 (350)
                      ++|..++++..
T Consensus       347 ~~A~~~~~~~l  357 (368)
T 1fch_A          347 DAYGAADARDL  357 (368)
T ss_dssp             GGHHHHHTTCH
T ss_pred             HhHHHhHHHHH
Confidence            99999887543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=2.9e-20  Score=164.07  Aligned_cols=303  Identities=16%  Similarity=0.101  Sum_probs=243.7

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ...+..+...+.+.|++++|...|+.+....|.++.++..+..++...|++++|++.|+++.+.++ .+..++..+..++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence            456777888999999999999999999887888999999999999999999999999999998753 4788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCC------------------------------------CCHh------------------
Q 018782           90 CKAGNIDEAHGMLREMRSIGAE------------------------------------PDAF------------------  115 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~------------------  115 (350)
                      ...|++++|+..|+.+......                                    |+..                  
T Consensus       104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV  183 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred             HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence            9999999999999644211100                                    1100                  


Q ss_pred             ------------hHHHHHHHHH--------hcCCHhHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHccCCHHHH
Q 018782          116 ------------SYSIFIHAFC--------EANDIHSVFRVLDSMKRYNLVPN-------VFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus       116 ------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a  168 (350)
                                  ....+...+.        ..|++++|..+++++.+.. +.+       ..++..+...+...|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence                        1111111111        1247889999999998764 222       23566777888899999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ...++++.+..  |+...+..+...+...|+++.|...++.+.+... .+..++..+..++...|++++|...++++.+.
T Consensus       263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            99999999874  5578888899999999999999999999988653 46788999999999999999999999999976


Q ss_pred             CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      ... +...+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus       340 ~~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          340 NPE-NVYPYIQLACLLYKQ-GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             CTT-CSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            322 456677777777666 99999999999999886 6778899999999999999999999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=2.6e-20  Score=156.35  Aligned_cols=267  Identities=12%  Similarity=0.008  Sum_probs=194.4

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      .+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            345557777888888888888888888887764 3367788888888888888888888888887753 34566778888


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCCCCcc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYNLVPN-----------VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNA  189 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~  189 (350)
                      .++...|++++|...++++.+..  |+           ...+..+...+...|++++|...++++.+.... ++..++..
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            88888888888888888876643  22           222334577888888888888888888877433 15778888


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC
Q 018782          190 ILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG  269 (350)
Q Consensus       190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  269 (350)
                      +...+...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+...+... |
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g  295 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL-G  295 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC-C
Confidence            8888888888999998888888764 3467788888888888999999999998888752 22466677777776655 8


Q ss_pred             cHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782          270 KLEEACKYFEMMVDEGI-----------PPYSSTVEMLRNRLVGLGFLDIIEILADK  315 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  315 (350)
                      ++++|...|+++.+...           ..+..+|..+..++...|+.+.+.++.++
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            89999999888875430           01367888999999999999888887765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=1.1e-19  Score=152.50  Aligned_cols=267  Identities=12%  Similarity=-0.007  Sum_probs=224.9

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+...|++++|...|+.+....|.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            356688889999999999999999999988778899999999999999999999999999999875 3488999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH---------------HHHHHHhcCCHhHHHHHHHHHhhCCCCc--cHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSI---------------FIHAFCEANDIHSVFRVLDSMKRYNLVP--NVFT  151 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~  151 (350)
                      +...|++++|...++++.+.... +...+..               .+..+...|++++|...++++.+.. +.  +..+
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~  219 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDV  219 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence            99999999999999999986432 2222221               2333448899999999999998764 22  5788


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR  231 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  231 (350)
                      +..+..++...|++++|...++++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+..++..
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            999999999999999999999999987533 67889999999999999999999999998864 3467889999999999


Q ss_pred             cCCHhHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 018782          232 VGRFDRATEVWESMEKRGFYP----------SVSTYSVMVHGLCKKKGKLEEACKYFEMM  281 (350)
Q Consensus       232 ~~~~~~a~~~~~~~~~~~~~p----------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~  281 (350)
                      .|++++|...|+++.+.....          ....|..+..++... |++++|..++++.
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~  356 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML-GQSDAYGAADARD  356 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH-TCGGGHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh-CChHhHHHhHHHH
Confidence            999999999999988642111          157788888887766 9999999888743

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=7e-20  Score=151.08  Aligned_cols=281  Identities=14%  Similarity=0.024  Sum_probs=181.0

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+...|++++|..+|+.+....|.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            344556666777777777777777777766666677777777777777777777777777777663 3366677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH-HH-HHHccCCHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI-IR-KLCKNEKVE  166 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~  166 (350)
                      +...|++++|.+.++++.+... .+...+..+...                      .|+......+ .. .+...|+++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            7777777777777777776531 122222222100                      0111111112 11 256667777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782          167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME  246 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  246 (350)
                      +|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.
T Consensus       156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777777666433 56667777777777777777777777776653 2345667777777777788888888777777


Q ss_pred             hcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782          247 KRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP------------YSSTVEMLRNRLVGLGFLDIIEILAD  314 (350)
Q Consensus       247 ~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~  314 (350)
                      +.. +.+...+..+...+... |++++|...++++.... +.            +..++..+..++.+.|++++|..+++
T Consensus       234 ~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          234 DIN-PGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HcC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            642 22455666666666555 78888888887776654 22            46777888888888888888888777


Q ss_pred             Hhhc
Q 018782          315 KMER  318 (350)
Q Consensus       315 ~~~~  318 (350)
                      +...
T Consensus       311 ~~l~  314 (327)
T 3cv0_A          311 QNVE  314 (327)
T ss_dssp             CCSH
T ss_pred             HHHH
Confidence            6543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=1.4e-20  Score=157.91  Aligned_cols=237  Identities=12%  Similarity=0.040  Sum_probs=145.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44456666667777777777777777776653 3355666777777777777777777777766653 335666677777


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CChhHHHHHHH
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANP---------DEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PDRHTYNMVLK  227 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~  227 (350)
                      +|...|++++|...++++.+.....         ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            7777777777777777766542110         0112233455666777777777777776665321 14566666777


Q ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 018782          228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLD  307 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  307 (350)
                      .+...|++++|...|+++.+.. +.+...+..+...+... |++++|...|+++.+.. |.+..++..+..+|.+.|+++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            7777777777777777766542 22455666666665554 77777777777776654 455666777777777777777


Q ss_pred             HHHHHHHHhhcc
Q 018782          308 IIEILADKMERS  319 (350)
Q Consensus       308 ~a~~~~~~~~~~  319 (350)
                      +|...++++.+.
T Consensus       299 ~A~~~~~~al~~  310 (365)
T 4eqf_A          299 EAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            777777766554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=2e-19  Score=148.30  Aligned_cols=274  Identities=11%  Similarity=-0.004  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+..+...+...|++++|..+|+++.+... .+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            34556667777777777777777777776533 366677777777777777777777777776653 3355566666677


Q ss_pred             HHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhcccCHH
Q 018782          124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA--YHCDRAEVN  201 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~  201 (350)
                      +...|++++|...++++.+.. +.+...+..+...                      .|+......+..  .+...|+++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            777777777777777766543 1111111111100                      011111112213  377889999


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM  281 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~  281 (350)
                      +|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+... |++++|...++++
T Consensus       156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a  232 (327)
T 3cv0_A          156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANG-NRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            99999999988653 467889999999999999999999999998763 23567777787777766 9999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc-----------HHHHHHHhcccccccccccchhh
Q 018782          282 VDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT-----------IQELANAMRGKTGFRKSRSEETE  346 (350)
Q Consensus       282 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~  346 (350)
                      .+.. +.+...+..+..++...|++++|.+.++++.+..+..           .......+...+...+...++.+
T Consensus       233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            9876 6678999999999999999999999999998766552           34445555555555555544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=6.2e-18  Score=136.74  Aligned_cols=274  Identities=12%  Similarity=0.055  Sum_probs=202.5

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPT-VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      +.....|+++.|+..++.+....|.+ ......+.++|...|+++.|+..++.    .-+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            45566899999999988875533333 34667778899999999999886654    23557778888888999999999


Q ss_pred             HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782           97 EAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      +|++.++++...+..| +...+..+...+...|++++|+..+++      +.+...+..++..+.+.|++++|...++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999988776444 455667777889999999999999887      467788888899999999999999999999


Q ss_pred             HHcCCCCCHHHH---HHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          176 IERGANPDEWSY---NAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       176 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      .+..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+... -
T Consensus       157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~  232 (291)
T 3mkr_A          157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G  232 (291)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence            8874  443211   223344445688999999999988874 45778888899999999999999999999887632 2


Q ss_pred             CHHHHHHHHHHHhhccCcHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782          253 SVSTYSVMVHGLCKKKGKLEE-ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       253 ~~~~~~~ll~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  311 (350)
                      +..++..++..+... |+.++ +.++++++.+.. |.++.+.    ....+.+.++++..
T Consensus       233 ~~~~l~~l~~~~~~~-g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          233 HPETLINLVVLSQHL-GKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             CHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHH
Confidence            566777777666655 77755 678888888775 4444332    23444444444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=1.7e-18  Score=139.96  Aligned_cols=260  Identities=11%  Similarity=0.080  Sum_probs=210.4

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      ++-....|+++.|+..+++.......+.......+.++|...|+++.|+..++.   . -+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            344556799999999998876542222234556788999999999999987654   2 356777889999999999999


Q ss_pred             hHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782          131 HSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITR  209 (350)
Q Consensus       131 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  209 (350)
                      ++|++.++++...+. +.+...+..+..++...|++++|+..+++      ..+...+..+...+.+.|++++|.+.++.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999987654 34566777788999999999999999987      35788899999999999999999999999


Q ss_pred             HHhCCCCCChhHHHHH----HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          210 MTKENVMPDRHTYNMV----LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       210 ~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      +.+..  |+.. ...+    +..+...|++++|..+|+++.+. .+.+...++.+..++... |++++|...|+++....
T Consensus       156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred             HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence            98864  5532 2223    33344458999999999999986 345777888888777766 99999999999999887


Q ss_pred             CCCCHHHHHHHHHHHHcCCChhH-HHHHHHHhhccCCCcHHH
Q 018782          286 IPPYSSTVEMLRNRLVGLGFLDI-IEILADKMERSTSCTIQE  326 (350)
Q Consensus       286 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~  326 (350)
                       |.++.++..++..+...|+.++ +.++++++.+.+|..+..
T Consensus       231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence             7789999999999999999976 678999999888777654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=1.6e-18  Score=143.65  Aligned_cols=268  Identities=12%  Similarity=0.088  Sum_probs=119.5

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      +++.+|..+..++.+.|++++|++.|.+.     ++...|..++..+...|++++|+..++...+.  .+++.+.+.++.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~  102 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence            34557888888888888888888888653     46667888888888888888888877666553  335677778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782           88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE  167 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  167 (350)
                      +|.+.|+++++.++++       .|+..+|..++..|...|.+++|..+|..+         ..|..++.++.+.|++++
T Consensus       103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~  166 (449)
T 1b89_A          103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA  166 (449)
T ss_dssp             ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred             HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence            8888888888777774       256668888888888888888888888866         367788888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      |.+.++++      .++.+|..++.+|...|+++.|......     +..++.-...++..|.+.|.+++|..+++....
T Consensus       167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~  235 (449)
T 1b89_A          167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG  235 (449)
T ss_dssp             HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence            88888877      2678888888888888888888554443     222333455677888888888888888888876


Q ss_pred             cCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHcCCChhHHHHH
Q 018782          248 RGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMV-DEGIPP------YSSTVEMLRNRLVGLGFLDIIEIL  312 (350)
Q Consensus       248 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~  312 (350)
                      .. .-....|+-+-..|++-  ++++..+.++... +-+++|      +...|..++-.|..-++++.|...
T Consensus       236 le-~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          236 LE-RAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             ST-TCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             Cc-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            53 34566666665555542  4444444444332 223333      456678888888888888877764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=1.5e-17  Score=128.68  Aligned_cols=199  Identities=13%  Similarity=0.010  Sum_probs=113.3

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      |+++..+..+...+...|++++|...|++.....|.++..+..+..++.+.|++++|+..|++..+..+ .+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence            556666677777777777777777777777666666777777777777777777777777777766633 2566666666


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           87 EAMCKA-----------GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        87 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      .++...           |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            666666           66666666666665542 2234455555555666666666666666555544  455555555


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM  210 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  210 (350)
                      ..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            55566666666666666655554322 4445555555555555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=8.6e-17  Score=127.83  Aligned_cols=226  Identities=12%  Similarity=0.083  Sum_probs=150.1

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CC----HHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VD----ILAHN   83 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~   83 (350)
                      ...+..+...+...|++++|...|+.+.... .+...+..+..++...|++++|...+++..+....  ++    ..++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3456666777777777777777777776644 66777777777777777777777777776654221  11    46677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782           84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE  163 (350)
Q Consensus        84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  163 (350)
                      .+..++...|++++|...|++..+.  .|+.       ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            7777777777777777777777764  2332       33455566777777777776643 334556666667777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782          164 KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE  243 (350)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  243 (350)
                      ++++|...++++.+.... +..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus       154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            777777777777665433 56666666677777777777777777766653 2345666666777777777777777776


Q ss_pred             HHHhc
Q 018782          244 SMEKR  248 (350)
Q Consensus       244 ~~~~~  248 (350)
                      +..+.
T Consensus       232 ~a~~~  236 (258)
T 3uq3_A          232 AARTK  236 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=1.1e-15  Score=134.64  Aligned_cols=306  Identities=11%  Similarity=0.056  Sum_probs=186.4

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      -|...|..++.. .+.|+++.|..+|+++....|.+...|..++..+.+.|++++|..+|++.....  |+...|...+.
T Consensus        11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~   87 (530)
T 2ooe_A           11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS   87 (530)
T ss_dssp             TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            356678888874 678999999999999988888899999999999999999999999999988763  46655554443


Q ss_pred             HH-Hh--------------------------------------------------cCCHHHHHHHHHHHHhCCCCCCHhh
Q 018782           88 AM-CK--------------------------------------------------AGNIDEAHGMLREMRSIGAEPDAFS  116 (350)
Q Consensus        88 ~~-~~--------------------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~  116 (350)
                      .. ..                                                  .|+++.|..+|++.++.........
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~  167 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL  167 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence            11 12                                                  2444555555555554210000112


Q ss_pred             HHHHHHHH-------------HhcCCHh----------------------------------------------------
Q 018782          117 YSIFIHAF-------------CEANDIH----------------------------------------------------  131 (350)
Q Consensus       117 ~~~l~~~~-------------~~~~~~~----------------------------------------------------  131 (350)
                      |.......             .+.+++.                                                    
T Consensus       168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~  247 (530)
T 2ooe_A          168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT  247 (530)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence            21111100             0001111                                                    


Q ss_pred             --------HHHHHHHHHhhCCCCccHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHH
Q 018782          132 --------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-------NEKVE-------EAYQLLDEMIERGANPDEWSYNA  189 (350)
Q Consensus       132 --------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~  189 (350)
                              .+..+|++..... +.+...|..++..+.+       .|+++       +|..++++..+.-.+.+...|..
T Consensus       248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~  326 (530)
T 2ooe_A          248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA  326 (530)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence                    1222233322221 2233444444444443       56665       67777777765211224666777


Q ss_pred             HHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782          190 ILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK  267 (350)
Q Consensus       190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  267 (350)
                      ++..+.+.|++++|..+|+.+.+.  .|+  ...|..++..+.+.|++++|..+|++..+... .+...+..........
T Consensus       327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~  403 (530)
T 2ooe_A          327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYC  403 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHH
Confidence            777777777888888888777774  333  24677777777777778888888877776421 1222222211111112


Q ss_pred             cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          268 KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      .|+.++|..+|++..+.. |.++..|..++..+.+.|+.++|..+|++.....+
T Consensus       404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence            378888888888877764 55678888888888888888888888888876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=1e-14  Score=127.16  Aligned_cols=291  Identities=11%  Similarity=0.019  Sum_probs=146.8

Q ss_pred             HhhHHHHHHHHHc----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782           10 IYDLDQLLHALCK----RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDILA   81 (350)
Q Consensus        10 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~   81 (350)
                      +..+..+...|..    .+++++|.++|++....  .++..+..|...|..    .+++++|...|++..+.|   +...
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  149 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG  149 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            3344445555554    55555555555554431  234444455555544    455555555555555443   3444


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCC--------
Q 018782           82 HNSLLEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNL--------  145 (350)
Q Consensus        82 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~--------  145 (350)
                      +..+...|..    .++.++|++.|++..+.|   +...+..+...|..    .++.++|..+|++..+.|.        
T Consensus       150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  226 (490)
T 2xm6_A          150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA  226 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4445555544    445555555555555432   33444444444444    4445555555544444320        


Q ss_pred             -------------------------CccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782          146 -------------------------VPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD  196 (350)
Q Consensus       146 -------------------------~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  196 (350)
                                               ..+...+..+...|..    .+++++|...|++..+.+   +...+..+...|..
T Consensus       227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK  303 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence                                     0122333333344443    455555555555544432   33344444444444


Q ss_pred             c-----cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC---CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Q 018782          197 R-----AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG---RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK--  266 (350)
Q Consensus       197 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--  266 (350)
                      .     +++++|...++...+.+   +...+..+...|...|   ++++|.+.|++..+.+   +...+..+-..|..  
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~  377 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK  377 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            3     55555555555555543   2334445555555444   5556666666665542   34444444444443  


Q ss_pred             --ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccCC
Q 018782          267 --KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERSTS  321 (350)
Q Consensus       267 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~  321 (350)
                        . +++++|...|++..+.+   ++..+..+...|..    .++.++|..+|++..+.++
T Consensus       378 g~~-~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          378 GVK-KDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             SSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             CCC-CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence              2 56666666666666654   45566666666665    6667777777776666553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.79  E-value=2.8e-19  Score=159.95  Aligned_cols=151  Identities=11%  Similarity=0.107  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLE---RKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI  119 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  119 (350)
                      ...+|+++|++|++.|++++|.++|++|.+   .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            346799999999999999999999988764   57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 018782          120 FIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD------EWSYNAILA  192 (350)
Q Consensus       120 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~  192 (350)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.    .+++.++++ ..+..|+      ..+...|..
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999984 78999999999999999999999888654443    333333333 2233333      344555566


Q ss_pred             HHhccc
Q 018782          193 YHCDRA  198 (350)
Q Consensus       193 ~~~~~~  198 (350)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=2.1e-14  Score=125.09  Aligned_cols=291  Identities=12%  Similarity=0.041  Sum_probs=201.9

Q ss_pred             CHhhHHHHHHHHHc----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHH
Q 018782            9 SIYDLDQLLHALCK----RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDIL   80 (350)
Q Consensus         9 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~   80 (350)
                      ++..+..+...|..    .+++++|..+|++....  .++..+..|...|..    .+++++|.+.|++..+.|   +..
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  112 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ  112 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            67778888888887    89999999999998663  467888899999988    899999999999998875   678


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782           81 AHNSLLEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        81 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      .+..|...|..    .+++++|+..|++..+.|   +...+..+...|..    .++.++|..+|++..+.|   +...+
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~  186 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            88889999988    889999999999999875   56678888888887    789999999999998865   56777


Q ss_pred             HHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782          153 NCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNM  224 (350)
Q Consensus       153 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  224 (350)
                      ..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|..+|+...+.+   +...+..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  260 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR  260 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            778888877    788888888888877654   44455555555543    556666666666655432   2233334


Q ss_pred             HHHHHHH----cCCHhHHHHHHHHHHhcCCC----------------------------------CCHHHHHHHHHHHhh
Q 018782          225 VLKLLVR----VGRFDRATEVWESMEKRGFY----------------------------------PSVSTYSVMVHGLCK  266 (350)
Q Consensus       225 l~~~~~~----~~~~~~a~~~~~~~~~~~~~----------------------------------p~~~~~~~ll~~~~~  266 (350)
                      +...|..    .+++++|...|++..+.|..                                  .+...+..+-..+..
T Consensus       261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~  340 (490)
T 2xm6_A          261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFR  340 (490)
T ss_dssp             HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            4444444    44444444444444432110                                  122233333333332


Q ss_pred             ccC---cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccC
Q 018782          267 KKG---KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERST  320 (350)
Q Consensus       267 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  320 (350)
                      . |   ++++|+++|++..+.+   ++..+..+...|..    .+++++|..++++..+.+
T Consensus       341 ~-g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          341 L-GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             S-CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             C-CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            2 2   5566666666666553   45566666666666    566666666666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2e-16  Score=125.72  Aligned_cols=225  Identities=12%  Similarity=0.048  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC--Ccc----HHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL--VPN----VFTYNC  154 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  154 (350)
                      .+..+...+...|++++|+..|+++.+..  .+..++..+..++...|++++|...+++..+...  .++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34444444444455555555554444433  3444444444455555555555555544433210  001    345555


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR  234 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (350)
                      +..++...|++++|...++++.+..  |+.       ..+...|++++|...++.+..... .+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence            5556666666666666666655542  222       234445666667776666666432 244556667777777777


Q ss_pred             HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782          235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILAD  314 (350)
Q Consensus       235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  314 (350)
                      +++|...++++.+.. +.+...+..+...+... |++++|...++++.+.. +.+...+..+..++...|++++|...++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            777777777776642 22455566666665554 77777777777777665 5567777777777777777777777777


Q ss_pred             HhhccC
Q 018782          315 KMERST  320 (350)
Q Consensus       315 ~~~~~~  320 (350)
                      +..+..
T Consensus       232 ~a~~~~  237 (258)
T 3uq3_A          232 AARTKD  237 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            776654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.79  E-value=3.9e-19  Score=159.06  Aligned_cols=150  Identities=12%  Similarity=0.164  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRS---IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      ..+|++||.+|++.|++++|.++|..|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            56899999999999999999999988764   478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC------hhHHHHHHHH
Q 018782          156 IRKLCKNEKV-EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD------RHTYNMVLKL  228 (350)
Q Consensus       156 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~  228 (350)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.    .+++..+++ ..+..|+      ..+...|.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence            9999999985 78999999999999999999999988765543    444444444 2233333      3344445555


Q ss_pred             HHHcC
Q 018782          229 LVRVG  233 (350)
Q Consensus       229 ~~~~~  233 (350)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            55443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.6e-18  Score=143.68  Aligned_cols=252  Identities=13%  Similarity=0.086  Sum_probs=113.1

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG  100 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  100 (350)
                      -+.|++++|.++++++.     ++.+|..++.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+.
T Consensus        14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            35788999999999983     3459999999999999999999999753      477899999999999999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      +++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            88888774  4567889999999999999999988874       367789999999999999999999999976     


Q ss_pred             CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782          181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM  260 (350)
Q Consensus       181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  260 (350)
                          ..|..+..++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.     ..+.....+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence                37999999999999999999999988      367999999999999999999966555432     344445567


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CChhHHHHHHH
Q 018782          261 VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL--GFLDIIEILAD  314 (350)
Q Consensus       261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~  314 (350)
                      +..|.+. |++++|+.+++...... +-....|..+.-+|++-  ++..+..+.|.
T Consensus       214 v~~Yek~-G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          214 INYYQDR-GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHC-CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7777655 99999999999998776 67788888888877764  34444444444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=1.2e-16  Score=123.62  Aligned_cols=197  Identities=11%  Similarity=0.009  Sum_probs=103.0

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAY  193 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  193 (350)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..+
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~   82 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA   82 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            3344444444444444444444444444432 223444444444444444444444444444444322 33444444444


Q ss_pred             Hhcc-----------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          194 HCDR-----------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       194 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      +...           |++++|...+++..+..+ -+...+..+..++...|++++|...|++..+..  .+...+..+..
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~  159 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence            4444           677777777777666432 245566667777777777777777777777655  45666666666


Q ss_pred             HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          263 GLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      .+... |++++|+..|+++.+.. |.+...+..+..++...|++++|...+++..
T Consensus       160 ~~~~~-g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          160 LYLSM-GRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHH-TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            65554 77777777777777665 5566677777777777777777777766654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.78  E-value=4.1e-16  Score=125.05  Aligned_cols=236  Identities=9%  Similarity=-0.008  Sum_probs=149.2

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLLE   87 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~   87 (350)
                      +..+......+...|++++|+..|+.+....|.+...+..+..++...|++++|+..+++..+.+..+  ...+|..+..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            44555666777777888888888877766666666677777777777788888888777777632111  2334677777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782           88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE  167 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  167 (350)
                      ++...|++++|++.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+..++..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777653 2345567777777777777777777777776653 3355556555523333447777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHHcCCHhH
Q 018782          168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAE---VNMALRLITRMTKEN-VMPD------RHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~  237 (350)
                      |...++++.+.... +...+..+...+...++   +++|...++++.+.. ..|+      ...|..+...|...|++++
T Consensus       161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777777665332 35555555555555555   555666666654431 1122      1345556666666666666


Q ss_pred             HHHHHHHHHhc
Q 018782          238 ATEVWESMEKR  248 (350)
Q Consensus       238 a~~~~~~~~~~  248 (350)
                      |...|+++.+.
T Consensus       240 A~~~~~~al~~  250 (272)
T 3u4t_A          240 ADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            66666666654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=8.7e-16  Score=133.27  Aligned_cols=313  Identities=10%  Similarity=-0.005  Sum_probs=212.6

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhh---c-----CCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCCC
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---E-----FTPTVKTYSILVRGLGD--VGELSEARKLFDEMLERKCPVD   78 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~   78 (350)
                      ...+|+.+..+|...|++++|...++++..   .     .+..+.++..+..++..  .+++++|+..|++..+..+. +
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~  171 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-N  171 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-C
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C
Confidence            346788999999999999999999998643   1     12345677776666654  45799999999999987433 5


Q ss_pred             HHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHH
Q 018782           79 ILAHNSLLEAM---CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFT  151 (350)
Q Consensus        79 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  151 (350)
                      +..+..+..++   ...++.++|++.+++..+.. +.+..++..+...+..    .+++++|.+.+++..... +.+..+
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~  249 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV  249 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence            66666665553   45677889999999988763 3355566666555544    467889999999987765 557788


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHh
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD-------------------RAEVNMALRLITRMTK  212 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~  212 (350)
                      +..+...|...|++++|...+++..+..+. +..++..+...|..                   .+..+.|...++....
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  328 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE  328 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            999999999999999999999999987544 56666666555432                   2335678888888777


Q ss_pred             CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCC-----
Q 018782          213 ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEMMVDEG-----  285 (350)
Q Consensus       213 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-----  285 (350)
                      .+. .+...+..+...+...|++++|...|++..+....|...  .+..+........|++++|+..|++..+..     
T Consensus       329 ~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~  407 (472)
T 4g1t_A          329 AND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE  407 (472)
T ss_dssp             HCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred             cCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence            543 456778889999999999999999999998764333221  122222222224489999999998876542     


Q ss_pred             ------------------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          286 ------------------IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       286 ------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                                        -|.++.+|..+..+|...|++++|.+.|++..+.++..|..
T Consensus       408 ~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a  466 (472)
T 4g1t_A          408 KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA  466 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence                              14567789999999999999999999999999877666543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=8.3e-15  Score=117.58  Aligned_cols=228  Identities=7%  Similarity=-0.050  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNC  154 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  154 (350)
                      +.++..+...+...|++++|++.|++..+.   .+...+..+...+..    .+++++|...|++..+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            344444444555555555555555555442   123344444444554    555555555555554443   3444445


Q ss_pred             HHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782          155 IIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNMVL  226 (350)
Q Consensus       155 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  226 (350)
                      +...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+.
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  153 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence            5555555    555555555555555542   44455555555555    566666666666655543   334555555


Q ss_pred             HHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh----ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782          227 KLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK----KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN  298 (350)
Q Consensus       227 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  298 (350)
                      ..|..    .+++++|...|++..+.+   +...+..+-..+..    . +++++|+..|++..+.+   +...+..+..
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            66665    666666666666666542   33444444444444    3 67777777777766664   2556666667


Q ss_pred             HHHc----CCChhHHHHHHHHhhccCCCcHH
Q 018782          299 RLVG----LGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       299 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      .|..    .+++++|.+.+++..+.++....
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            7776    77777777777777766544433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=9.4e-16  Score=128.12  Aligned_cols=229  Identities=11%  Similarity=0.072  Sum_probs=151.4

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-LSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ..|..+..++...|++++|+..|+++....|.+..+|+.+..++...|+ +++|+..|++.++.... +...|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence            3455666666777777777777777776666777777777777777775 77777777777776443 667777777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHH
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEA  168 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a  168 (350)
                      ...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +.+...|+.+..++.. .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence            77777777777777777653 3356667777777777777777777777776654 3456677777777776 4444555


Q ss_pred             -----HHHHHHHHHcCCCCCHHHHHHHHHHHhccc--CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC--------
Q 018782          169 -----YQLLDEMIERGANPDEWSYNAILAYHCDRA--EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG--------  233 (350)
Q Consensus       169 -----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------  233 (350)
                           +..+++..+.... +...|..+...+...|  ++++|.+.+..+ +. .+.+...+..+..+|.+.|        
T Consensus       255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence                 3666666665433 5556666666666655  466666666665 32 2234555666666666653        


Q ss_pred             -CHhHHHHHHHHH
Q 018782          234 -RFDRATEVWESM  245 (350)
Q Consensus       234 -~~~~a~~~~~~~  245 (350)
                       .+++|.++|+++
T Consensus       332 ~~~~~A~~~~~~l  344 (382)
T 2h6f_A          332 DILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             246666666666

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=4.2e-16  Score=124.97  Aligned_cols=250  Identities=9%  Similarity=-0.007  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD--AFSYSIFI  121 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~  121 (350)
                      +..+......+...|++++|+..|++..+.... +...+..+..++...|++++|++.+++..+.+..++  ...|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            345566677777888888888888888776432 555777777788888888888888888877331111  22367777


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN  201 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  201 (350)
                      ..+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence            77888888888888888776654 345567777777788888888888888777766322 4555655552333445777


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---HhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHhhccCcH
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGR---FDRATEVWESMEKRG-FYPS------VSTYSVMVHGLCKKKGKL  271 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~ll~~~~~~~~~~  271 (350)
                      +|...++.+.+... .+...+..+..++...|+   +++|...++++.+.. -.|+      ...+..+...+... |++
T Consensus       160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~  237 (272)
T 3u4t_A          160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-RDK  237 (272)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc-CCH
Confidence            77777777776532 335566666777777776   666777777666431 1122      13344444444444 777


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782          272 EEACKYFEMMVDEGIPPYSSTVEMLRNR  299 (350)
Q Consensus       272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~  299 (350)
                      ++|.+.|+++.+.. |.+......+...
T Consensus       238 ~~A~~~~~~al~~~-p~~~~a~~~l~~~  264 (272)
T 3u4t_A          238 VKADAAWKNILALD-PTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred             HHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence            77777777776665 4455555444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.76  E-value=7.2e-15  Score=117.94  Aligned_cols=222  Identities=11%  Similarity=-0.021  Sum_probs=107.7

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      +.++..+...+...|++++|.+.|++...  +.++..+..+...+..    .+++++|...|++..+.+   +...+..+
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            34444445555555555555555555443  2334445555555555    555555555555555443   44455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           86 LEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        86 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      ...+..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            555555    555555555555555442   34444445555555    555555555555554433   3334444444


Q ss_pred             HHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 018782          158 KLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNMVLKLL  229 (350)
Q Consensus       158 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  229 (350)
                      .|..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...++...+.+.   ...+..+..+|
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~  228 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence            4444    455555555555544432   23344444444444    4455555555554444321   33344444444


Q ss_pred             HH----cCCHhHHHHHHHHHHhc
Q 018782          230 VR----VGRFDRATEVWESMEKR  248 (350)
Q Consensus       230 ~~----~~~~~~a~~~~~~~~~~  248 (350)
                      ..    .+++++|...|++..+.
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HcCCCcccCHHHHHHHHHHHHHc
Confidence            44    44455555555444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.76  E-value=1.4e-15  Score=120.48  Aligned_cols=211  Identities=14%  Similarity=0.094  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      +..+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            5677888888888899999999998888764 3367888888888888999999999998888763 3466778888888


Q ss_pred             HHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782          124 FCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  202 (350)
                      +...|++++|..+++++.+.+..| +...+..+..++...|++++|...++++.+.... +...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            888999999999998887732223 5667788888888999999999999988877533 57788888888889999999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782          203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM  260 (350)
Q Consensus       203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  260 (350)
                      |...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.  .|+...+..+
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~  248 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence            999999888754 356677888888888999999999999998875  4554444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=2.1e-15  Score=117.13  Aligned_cols=202  Identities=12%  Similarity=0.001  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      ++..+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            34444555555555555555555555554442 2234455555555555555555555555555432 223444555555


Q ss_pred             HHHhc-CCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782          123 AFCEA-NDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV  200 (350)
Q Consensus       123 ~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  200 (350)
                      .+... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            55555 555555555555544211 112344555555555556666666666555554322 345555555556666666


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      ++|...++.+.......+...+..+...+...|+.+.|..+++.+.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            66666666655542213444455555555666666666666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.75  E-value=2.4e-15  Score=116.86  Aligned_cols=202  Identities=9%  Similarity=-0.048  Sum_probs=119.9

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ++..+..+...+...|++++|.+.|+.+....|.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            344555556666666666666666666655555556666666666666666666666666666553 2255566666666


Q ss_pred             HHhc-CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782           89 MCKA-GNIDEAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE  166 (350)
Q Consensus        89 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  166 (350)
                      +... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            6666 66666666666666522122 23455556666666666666666666665543 234555666666666666666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      +|...++++.+.....+...+..+...+...|+.+.+..+++.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            6666666666553312455555555555666666666666666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.75  E-value=1.3e-15  Score=127.21  Aligned_cols=251  Identities=10%  Similarity=0.043  Sum_probs=193.6

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN-IDEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      +...|..+..++...|++++|++.++++++.... +..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            4567888888888999999999999999887544 78889999999999996 999999999998864 34677888899


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-ccCH
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD-RAEV  200 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~  200 (350)
                      .++...|++++|+..|+++.+.. +-+..+|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999998865 457888888999999999999999999999988655 77888888888887 5554


Q ss_pred             HHH-----HHHHHHHHhCCCCCChhHHHHHHHHHHHcC--CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc-----
Q 018782          201 NMA-----LRLITRMTKENVMPDRHTYNMVLKLLVRVG--RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK-----  268 (350)
Q Consensus       201 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-----  268 (350)
                      ++|     +..+++.+.... -+...|..+..++...|  ++++|.+.+.++ +. -..+...+..+...+....     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            666     477888777543 35667888888888777  588888888887 32 2334566666666665541     


Q ss_pred             --C-cHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 018782          269 --G-KLEEACKYFEMM-VDEGIPPYSSTVEMLRNRLV  301 (350)
Q Consensus       269 --~-~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~  301 (350)
                        + ..++|+++++++ .+.+ |.....|..+...+.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence              2 358888888888 6665 555566666655544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=1.2e-16  Score=128.32  Aligned_cols=246  Identities=13%  Similarity=0.046  Sum_probs=161.6

Q ss_pred             HccCChHHHHHHHHHhhhcC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEF----TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      ...|++++|+..|+.+....    +.+..++..+..++...|++++|...|+++.+... .+..+|..+..++...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence            44678888888888876532    23567778888888888888888888888877643 36778888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782           97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI  176 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  176 (350)
                      +|...|+++.+.. +.+...+..+..++...|++++|...++++.+..  |+.......+..+...|++++|...+++..
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            8888888887753 3356677778888888888888888888877653  443344444445566678888888887766


Q ss_pred             HcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782          177 ERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP---DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS  253 (350)
Q Consensus       177 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~  253 (350)
                      .... ++...+. ++..+...++.++|...+..........   +...+..+..++...|++++|...|+++.+.  .|+
T Consensus       172 ~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~  247 (275)
T 1xnf_A          172 EKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH  247 (275)
T ss_dssp             HHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred             hcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence            6532 2333333 5555666677777777777765532110   1356667777777777777777777777764  332


Q ss_pred             -HHHHHHHHHHHhhccCcHHHHHHHH
Q 018782          254 -VSTYSVMVHGLCKKKGKLEEACKYF  278 (350)
Q Consensus       254 -~~~~~~ll~~~~~~~~~~~~a~~~~  278 (350)
                       ...+   ..++... |++++|++.+
T Consensus       248 ~~~~~---~~~~~~l-~~~~~a~~~~  269 (275)
T 1xnf_A          248 NFVEH---RYALLEL-SLLGQDQDDL  269 (275)
T ss_dssp             TCHHH---HHHHHHH-HHHHHC----
T ss_pred             hHHHH---HHHHHHH-HHHHhhHHHH
Confidence             2222   2223333 6666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=4.3e-15  Score=117.68  Aligned_cols=202  Identities=14%  Similarity=0.032  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK  158 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  158 (350)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4455666666666677777777776666542 2345566666666666777777777776665543 3355566666666


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  237 (350)
                      +...|++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            666777777777776666522223 344555566666666777777777766665432 345566666666667777777


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      |...++++.+.. ..+...+..+...+... |++++|.+.++++.+..
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHC
Confidence            777776666542 22344444444444433 67777777777666654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.74  E-value=4.3e-16  Score=122.71  Aligned_cols=202  Identities=12%  Similarity=0.086  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      ..+..|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            344555556666666666666666666666542 2255666666666666666666666666666542 23455566666


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN  201 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  201 (350)
                      ..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence            66666666666666666665543 335556666666666677777777777666665332 5556666666667777777


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      +|...++.+.+... .+..++..+..++...|++++|...++++.+.
T Consensus       177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            77777777666432 34556667777777777777777777777664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.73  E-value=1.2e-15  Score=122.54  Aligned_cols=248  Identities=10%  Similarity=-0.003  Sum_probs=186.7

Q ss_pred             hccCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782           55 GDVGELSEARKLFDEMLERKC---PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH  131 (350)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  131 (350)
                      ...|++++|+..|+++.+...   +.+..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            456889999999999988632   1246778889999999999999999999998864 346788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782          132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT  211 (350)
Q Consensus       132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  211 (350)
                      +|...|+++.+.. +.+..++..+..++...|++++|...++++.+..  |+.......+..+...|++++|...++...
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999998864 4467888999999999999999999999998874  344444445555677799999999998877


Q ss_pred             hCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782          212 KENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY--P-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP  288 (350)
Q Consensus       212 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (350)
                      ... +++...+ .++..+...++.++|...++...+....  | +...+..+...+... |++++|...|+++.... |.
T Consensus       172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~  247 (275)
T 1xnf_A          172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANN-VH  247 (275)
T ss_dssp             HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-CT
T ss_pred             hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC-ch
Confidence            653 2344444 4677777888889999999888754211  0 145666677666655 99999999999998775 33


Q ss_pred             CHHHHHHHHHHHHcCCChhHHHHHH
Q 018782          289 YSSTVEMLRNRLVGLGFLDIIEILA  313 (350)
Q Consensus       289 ~~~~~~~l~~~~~~~g~~~~a~~~~  313 (350)
                      +...   ...++...|++++|.+.+
T Consensus       248 ~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          248 NFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TCHH---HHHHHHHHHHHHHC----
T ss_pred             hHHH---HHHHHHHHHHHHhhHHHH
Confidence            4333   355677778888887765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=5.2e-14  Score=122.06  Aligned_cols=309  Identities=12%  Similarity=0.007  Sum_probs=219.4

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhh---------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----C
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----K   74 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~   74 (350)
                      ....|+.+...+...|++++|++.|++...         ..+....+|+.+..+|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            455688899999999999999999988632         13445678999999999999999999999987642     1


Q ss_pred             --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH---HHhcCCHhHHHHHHHHHhhCCCCc
Q 018782           75 --CPVDILAHNSLLEAMCKA--GNIDEAHGMLREMRSIGAEPDAFSYSIFIHA---FCEANDIHSVFRVLDSMKRYNLVP  147 (350)
Q Consensus        75 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~  147 (350)
                        ......++..+..++...  +++++|++.|++..+.. +-+...+..+..+   +...++.++|+..+++..+.. +.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence              112456777666666554  56899999999999863 2244455555444   345677888999999887764 34


Q ss_pred             cHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782          148 NVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN  223 (350)
Q Consensus       148 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  223 (350)
                      +..++..+...+..    .|++++|...+++....... +..++..+...+...|++++|...+++..+..+ .+..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence            56666666554443    56788999999999887544 678888999999999999999999999988643 3556676


Q ss_pred             HHHHHHHHc-------------------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          224 MVLKLLVRV-------------------GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       224 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      .+..+|...                   +.++.|...++...+... .+...+..+...+... |++++|...|++..+.
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~-~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA-DQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT-TCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh-ccHHHHHHHHHHHHhc
Confidence            666665432                   236678888888776522 2334555666666655 9999999999999987


Q ss_pred             CCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHhhccCCCc
Q 018782          285 GIPPYSS--TVEMLRN-RLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       285 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      ...+...  .+..+.. .....|++++|+..+++..+..+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            6333221  2333332 3457899999999999887655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=2.3e-15  Score=118.53  Aligned_cols=206  Identities=12%  Similarity=0.065  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH  194 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  194 (350)
                      ..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence            344445555555555555555555555432 234555555555555666666666666655554322 455555555566


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHH
Q 018782          195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEA  274 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a  274 (350)
                      ...|++++|.+.++.+.+.. +.+...+..+..++...|++++|...++++.+.. ..+...+..+...+... |++++|
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A  178 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE-GMLDEA  178 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-CCHHHH
Confidence            66666666666666655543 2344556666666666666666666666666542 12444555555555444 677777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          275 CKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      ...++++.+.. +.+..++..+..++...|++++|...++++.+..+..+..
T Consensus       179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  229 (243)
T 2q7f_A          179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA  229 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence            77777666654 4556667777777777777777777777776666555543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=4.4e-13  Score=117.99  Aligned_cols=218  Identities=11%  Similarity=0.072  Sum_probs=162.8

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHh-------cCCHh-------HHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCE-------ANDIH-------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE  163 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  163 (350)
                      +..+|++.... .+.+...|..++..+..       .|+++       +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus       257 a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          257 VMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence            33444444443 12345566666666664       68877       89999999986323456889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH-HHHcCCHhHHHHH
Q 018782          164 KVEEAYQLLDEMIERGANPD-EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL-LVRVGRFDRATEV  241 (350)
Q Consensus       164 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~  241 (350)
                      ++++|..+|+++.+.... + ...|..++..+.+.|+.+.|.++|+...+... .+...|...+.. +...|+.++|..+
T Consensus       336 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             CHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHH
Confidence            999999999999986322 3 35788888888899999999999999988632 233333332222 3468999999999


Q ss_pred             HHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          242 WESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG-IPP--YSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       242 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      |+...+.  .| +...|..++..+... |+.++|..+|++....+ ..|  ....|...+......|+.+.+..+.+++.
T Consensus       414 ~e~al~~--~p~~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~  490 (530)
T 2ooe_A          414 FELGLKK--YGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  490 (530)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             HHHHHHH--CCCCHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9998875  34 567777777766555 99999999999999874 122  24478888888888999999999999987


Q ss_pred             ccCC
Q 018782          318 RSTS  321 (350)
Q Consensus       318 ~~~~  321 (350)
                      +.-+
T Consensus       491 ~~~p  494 (530)
T 2ooe_A          491 TAFR  494 (530)
T ss_dssp             HHTH
T ss_pred             HHCc
Confidence            7544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=9.3e-14  Score=113.46  Aligned_cols=218  Identities=11%  Similarity=0.101  Sum_probs=142.1

Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-------cCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           27 KVAHQFFDNAKHEFTPTVKTYSILVRGLGD-------VGEL-------SEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        27 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      ++|...|+++....|.++..|..++..+..       .|++       ++|..+|++..+.-.+-+...|..++..+...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            567778877777667777777777777653       4665       77777777777631223566777777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH-ccCCHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGAEPD-AF-SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC-KNEKVEEAY  169 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~  169 (350)
                      |++++|..+|+++.+.  .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus       113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            7888888888777764  333 32 67777777777777777777777776654 234444443333222 257777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC-CCC--ChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782          170 QLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN-VMP--DRHTYNMVLKLLVRVGRFDRATEVWESME  246 (350)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  246 (350)
                      .+|++..+..+. +...|..++..+.+.|++++|..+|++..... ..|  ....|..++....+.|+.+.|..+++++.
T Consensus       190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777665332 56666666666677777777777777776642 233  34456666666666777777777777766


Q ss_pred             hc
Q 018782          247 KR  248 (350)
Q Consensus       247 ~~  248 (350)
                      +.
T Consensus       269 ~~  270 (308)
T 2ond_A          269 TA  270 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.70  E-value=9.7e-16  Score=130.13  Aligned_cols=300  Identities=13%  Similarity=0.055  Sum_probs=222.0

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-C
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT----VKTYSILVRGLGDVGELSEARKLFDEMLER----KCP-V   77 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~   77 (350)
                      .+....+......+...|++++|...|+++....+.+    ..++..+...+...|++++|...+++....    +.+ .
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            3455566777888999999999999999987754555    367888999999999999999999987543    111 1


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCC--------------------HhH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEAND--------------------IHS  132 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~  132 (350)
                      ...++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            2557888899999999999999999988753110 11    3478888899999999                    999


Q ss_pred             HHHHHHHHhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHH
Q 018782          133 VFRVLDSMKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       133 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~  202 (350)
                      |...+++..+.    +. +....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99998876442    11 122457788889999999999999999988754111 12    2367788888999999999


Q ss_pred             HHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHH
Q 018782          203 ALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLE  272 (350)
Q Consensus       203 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~  272 (350)
                      |...+++....... ++    ..++..+...+...|++++|...+++..+... .++    ...+..+...+... |+++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~  324 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHH
Confidence            99999987653111 11    45778889999999999999999998875311 112    34556666666655 9999


Q ss_pred             HHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChh
Q 018782          273 EACKYFEMMVDE----GI-PPYSSTVEMLRNRLVGLGFLD  307 (350)
Q Consensus       273 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~  307 (350)
                      +|...+++..+.    +. +....++..+...+...|+..
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            999999987643    21 123456777888888777664

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=1.2e-15  Score=129.89  Aligned_cols=275  Identities=10%  Similarity=0.032  Sum_probs=175.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI----LAHNSLLEAMCKAGNIDEAHGMLREMRSI----GA-EPD  113 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~  113 (350)
                      ....+..+...+...|++++|...|+++.+.+.. +.    .++..+..++...|++++|...+++..+.    +. +..
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3444556666777777777777777777766322 32    45667777777777777777777776542    11 123


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----C-CCccHHHHHHHHHHHHccCC-----------------HHHHHHH
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----N-LVPNVFTYNCIIRKLCKNEK-----------------VEEAYQL  171 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~  171 (350)
                      ..++..+...+...|++++|...+++..+.    + .+....++..+...+...|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            346666777777777777777777766442    1 11234566677777777777                 7777777


Q ss_pred             HHHHHHc----CCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHhHHHHH
Q 018782          172 LDEMIER----GAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       172 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      +++..+.    +.. ....++..+...+...|++++|...+++..+.... ++    ...+..+..++...|++++|...
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            7765432    111 12345666777777788888888887776553110 11    22667777888888888888888


Q ss_pred             HHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782          242 WESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG-----IPPYSSTVEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       242 ~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~  311 (350)
                      +++..+... ..+    ...+..+...+... |++++|...+++.....     ......++..+..++...|++++|..
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            877664310 011    34555566665555 88888888888776431     01124467778888888888888888


Q ss_pred             HHHHhhcc
Q 018782          312 LADKMERS  319 (350)
Q Consensus       312 ~~~~~~~~  319 (350)
                      .+++..+.
T Consensus       365 ~~~~al~~  372 (411)
T 4a1s_A          365 YAEQHLQL  372 (411)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.67  E-value=5.3e-15  Score=125.95  Aligned_cols=274  Identities=13%  Similarity=0.053  Sum_probs=211.4

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhc----C-CCCCHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV----KTYSILVRGLGDVGELSEARKLFDEMLER----K-CPVDILA   81 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~   81 (350)
                      ..+..+...+...|++++|...|+++....+.+.    .++..+..++...|++++|...+++..+.    + .+....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3445566788899999999999999877555554    57889999999999999999999998753    1 1224567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC-----------------HhHHHHHHHH
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIG-----AEPDAFSYSIFIHAFCEAND-----------------IHSVFRVLDS  139 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~  139 (350)
                      +..+...+...|++++|...+++..+..     .+....++..+...+...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            8889999999999999999999987531     11234478888999999999                 9999999988


Q ss_pred             HhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782          140 MKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNMALRLITR  209 (350)
Q Consensus       140 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~  209 (350)
                      ..+.    +. +....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            7542    11 123457888889999999999999999998875221 12    22677888899999999999999999


Q ss_pred             HHhCCCC-C----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782          210 MTKENVM-P----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYP-SVSTYSVMVHGLCKKKGKLEEACKYFE  279 (350)
Q Consensus       210 ~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~  279 (350)
                      ....... .    ...++..+..++...|++++|...+++..+.    +..+ ....+..+...+... |++++|...++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~  367 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-GGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            8775221 1    1457788999999999999999999998753    1111 133556666666655 99999999999


Q ss_pred             HHHhCC
Q 018782          280 MMVDEG  285 (350)
Q Consensus       280 ~~~~~~  285 (350)
                      +..+..
T Consensus       368 ~al~~~  373 (411)
T 4a1s_A          368 QHLQLA  373 (411)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.66  E-value=4e-15  Score=122.78  Aligned_cols=276  Identities=15%  Similarity=0.094  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CCHHHH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT----VKTYSILVRGLGDVGELSEARKLFDEMLER----KCP-VDILAH   82 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~   82 (350)
                      .+......+...|++++|...|+++....+.+    ...+..+...+...|++++|.+.+++..+.    +.+ ....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            34444556667777777777777765543433    355666677777777777777777665432    111 124455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCC--------------------HhHHHHHH
Q 018782           83 NSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AFSYSIFIHAFCEAND--------------------IHSVFRVL  137 (350)
Q Consensus        83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~  137 (350)
                      ..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|...+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            6666666667777777766666543210 011    2245555555555565                    55555555


Q ss_pred             HHHhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782          138 DSMKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMT  211 (350)
Q Consensus       138 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  211 (350)
                      ++....    +. +....++..+...+...|++++|...+++..+.... ++.                           
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------------------  219 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------------------------  219 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence            443221    10 011223444444444455555555544444321000 000                           


Q ss_pred             hCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-
Q 018782          212 KENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG-  285 (350)
Q Consensus       212 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-  285 (350)
                          .....++..+...+...|++++|...+++..+... .++    ...+..+...+... |++++|...++++.+.. 
T Consensus       220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence                00112444555555555555555555555442100 001    22333344444333 56666666665554321 


Q ss_pred             ----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          286 ----IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       286 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                          ......++..+...+.+.|++++|...+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                0111335556666666666666666666665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=5.1e-14  Score=105.82  Aligned_cols=167  Identities=11%  Similarity=0.025  Sum_probs=98.5

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ++.+|..+...+...|++++|++.|++.....|.++.++..+..++...|++++|...+......... +...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence            34456666666666666666666666665555556666666666666666666666666666554322 45555555566


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  168 (350)
                      +...++++.|...+.+..+.. +.+...+..+..++...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            666666666666666665542 2344555556666666666666666666655543 33455555666666666666666


Q ss_pred             HHHHHHHHHc
Q 018782          169 YQLLDEMIER  178 (350)
Q Consensus       169 ~~~~~~~~~~  178 (350)
                      ...|++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            6666665554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.66  E-value=1.7e-14  Score=124.88  Aligned_cols=216  Identities=11%  Similarity=-0.002  Sum_probs=165.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 018782           59 ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI-DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVL  137 (350)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  137 (350)
                      .++++++.+++.... .+.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            466777777776655 234778888888888888888 88888888888753 335678888888888888888888888


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------cCH
Q 018782          138 DSMKRYNLVPNVFTYNCIIRKLCKN---------EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR--------AEV  200 (350)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~  200 (350)
                      ++..+..  |+...+..+..++...         |++++|...+++..+.... +...|..+..++...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            8888754  6677888888888888         8888898888888887544 677788888888877        888


Q ss_pred             HHHHHHHHHHHhCCCC--CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHH
Q 018782          201 NMALRLITRMTKENVM--PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYF  278 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~  278 (350)
                      ++|...|++..+....  .+...|..+..+|...|++++|...|++..+... .+...+..+...+... |++++|++.+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~l-g~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFL-SRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            9999988888875321  3677888888888889999999999988887522 2344555555555544 8888888776


Q ss_pred             HHH
Q 018782          279 EMM  281 (350)
Q Consensus       279 ~~~  281 (350)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=1.2e-14  Score=123.32  Aligned_cols=276  Identities=12%  Similarity=0.056  Sum_probs=209.9

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAEP  112 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~  112 (350)
                      ......+......+...|++++|...|++..+.+.. +    ..++..+...+...|++++|...+++..+.    +..|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            456667788899999999999999999999987433 3    357888999999999999999999987642    2122


Q ss_pred             -CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC----C-CccHHHHHHHHHHHHccCC--------------------HH
Q 018782          113 -DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN----L-VPNVFTYNCIIRKLCKNEK--------------------VE  166 (350)
Q Consensus       113 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~--------------------~~  166 (350)
                       ...++..+...+...|++++|...+++..+..    - .....++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             24577888899999999999999999876531    0 1124478888899999999                    99


Q ss_pred             HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHh
Q 018782          167 EAYQLLDEMIER----GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFD  236 (350)
Q Consensus       167 ~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~  236 (350)
                      +|...+++....    +..| ...++..+...+...|++++|...+++..+.... ++    ..++..+..++...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999887643    1111 1346777888899999999999999987654111 11    237888999999999999


Q ss_pred             HHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHcCCCh
Q 018782          237 RATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-----PPYSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       237 ~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~  306 (350)
                      +|...+++..+... .++    ..++..+...+... |++++|...+++..+...     +....++..+...+...|++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  323 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH  323 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            99999998874310 112    34566666666655 999999999999875421     11256788899999999999


Q ss_pred             hHHHHHHHHhhc
Q 018782          307 DIIEILADKMER  318 (350)
Q Consensus       307 ~~a~~~~~~~~~  318 (350)
                      ++|...+++..+
T Consensus       324 ~~A~~~~~~al~  335 (406)
T 3sf4_A          324 DQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.65  E-value=5e-14  Score=118.79  Aligned_cols=294  Identities=9%  Similarity=-0.005  Sum_probs=205.5

Q ss_pred             HHccCChHHHHHHHHHhhh---cCCCC--HHHHHHHHHH--HhccCCHHHHH-----------HHHHHHHhcCCCCCHH-
Q 018782           20 LCKRKHVKVAHQFFDNAKH---EFTPT--VKTYSILVRG--LGDVGELSEAR-----------KLFDEMLERKCPVDIL-   80 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~---~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~-   80 (350)
                      +.+.+++++|..+++.+..   ....+  ...|..++..  ....+.++.+.           +.++.+....  .+.. 
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            4579999999999999865   22233  3333443332  22234444444           6666665431  1112 


Q ss_pred             -----HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----C--
Q 018782           81 -----AHNSLLEAMCKAGNIDEAHGMLREMRSI----GAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----N--  144 (350)
Q Consensus        81 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--  144 (350)
                           .+......+...|++++|+..|++..+.    +-.+ ...++..+...+...|+++.|...+++..+.    +  
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                 1223566788899999999999999864    1111 2457888999999999999999999987542    1  


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHHHHHHHHHHHh-----CC
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNMALRLITRMTK-----EN  214 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~  214 (350)
                      .+....++..+..+|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+     ..
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            0112457888899999999999999999988754211 12    24678888999999999999999999877     33


Q ss_pred             CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCC
Q 018782          215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG---FYPS-VSTYSVMVHGLCKKKGK---LEEACKYFEMMVDEGIP  287 (350)
Q Consensus       215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~-~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~  287 (350)
                      .+....++..+..++...|++++|...+++..+..   -.|. ...+..+-..+. ..|+   +++|+.++++.  ...+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~--~~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK--MLYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT--TCHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC--cCHH
Confidence            13345678899999999999999999999887531   0122 222344444444 4477   77777777766  2222


Q ss_pred             CCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          288 PYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       288 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .....+..+...|...|++++|...+++..+
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455778899999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=1.4e-13  Score=103.47  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      ++.+|..+..++...|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4555666666666666666666666666655322 55566666666666666666666666665542 223444555555


Q ss_pred             HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782          123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM  202 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  202 (350)
                      .+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|++.|++..+..+. +..+|..+..++...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            5555666666666665555443 234455555555555566666666666555554322 44555555555555555555


Q ss_pred             HHHHHHHHHh
Q 018782          203 ALRLITRMTK  212 (350)
Q Consensus       203 a~~~~~~~~~  212 (350)
                      |.+.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.64  E-value=1.4e-14  Score=119.53  Aligned_cols=244  Identities=11%  Similarity=0.026  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhh
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAE-PDAFS  116 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~  116 (350)
                      .+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|.+.+++..+.    +.. ....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3444555666667777777777776665322 2    245556666666666666666666665432    101 11234


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCC-Ccc----HHHHHHHHHHHHccCC-------------HHHHHHHHHHHHHc
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPN----VFTYNCIIRKLCKNEK-------------VEEAYQLLDEMIER  178 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~  178 (350)
                      +..+...+...|++++|...+++..+... .++    ..++..+...+...|+             .+++...       
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------  158 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------  158 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence            44555555555555555555555432100 001    1233344444444444             0000000       


Q ss_pred             CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----C-CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CC
Q 018782          179 GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE----N-VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YP  252 (350)
Q Consensus       179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p  252 (350)
                                           +++|...++.....    + .......+..+...+...|++++|...+++..+... .+
T Consensus       159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  217 (338)
T 3ro2_A          159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  217 (338)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence                                 45555444443221    1 111234677788888888999999988888764210 11


Q ss_pred             C----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          253 S----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-PP----YSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       253 ~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      +    ...+..+...+... |++++|...+++...... ..    ...++..+...+...|++++|...+++....
T Consensus       218 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          218 DKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2    23566666666655 999999999998865420 01    1567888999999999999999999987653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.63  E-value=1.1e-12  Score=121.76  Aligned_cols=257  Identities=14%  Similarity=0.175  Sum_probs=143.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN   94 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (350)
                      .+...+...|.+++|..+|++...    .....+.++.   ..+++++|.++.++..      ++.+|..+..++...|+
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence            345666777788888887777531    1111122211   4556666666665441      45666666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782           95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE  174 (350)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  174 (350)
                      +++|++.|.+.      -|...|..++.++.+.|++++|.+++....+..  ++....+.++.+|++.+++++...+.  
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            66666666443      345556666666666666666666666655543  23223334666666666665433322  


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH
Q 018782          175 MIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV  254 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~  254 (350)
                        .   .++...|..+...|...|++++|..+|..+         ..|..+..++.+.|++++|.+.+++..      +.
T Consensus      1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A         1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred             --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence              1   234445555666666666666666666653         256666666666666666666666552      33


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST  320 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  320 (350)
                      .+|..+-.++... |++..|......     +..++..+..++..|.+.|.+++|..+++.....+
T Consensus      1251 ~aWkev~~acve~-~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A         1251 RTWKEVCFACVDG-KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred             HHHHHHHHHHhhh-hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            4454444444333 555555443331     23345555566666666666666666665555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=2.6e-12  Score=104.89  Aligned_cols=237  Identities=10%  Similarity=0.047  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHhcc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 018782           43 TVKTYSILVRGLGDV----GEL----SEARKLFDEMLERKCPVDILAHNSLLEAMCK-------AGNI-------DEAHG  100 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~  100 (350)
                      +...|...+....+.    ++.    ++|...|++..... +.++..|..++..+..       .|++       ++|..
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~   85 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN   85 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence            345566666655443    233    56777777777653 3467777777766653       4664       77777


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VF-TYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      +|++..+.-.+-+...|..++..+...|++++|..+|+++.+..  |+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus        86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A           86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            77777763112344567777777777777777777777776642  32 32 6677777777777777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHh-cccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC-CCC--CH
Q 018782          179 GANPDEWSYNAILAYHC-DRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-FYP--SV  254 (350)
Q Consensus       179 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~  254 (350)
                      ... +...|........ ..|+++.|..+|+...+..+ .+...|..++..+.+.|++++|..+|++..... +.|  ..
T Consensus       164 ~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          164 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             TTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            332 3334433322211 25677777777777665432 345666666667777777777777777776642 233  24


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      ..|..++...... |+.+.|..+++++.+..
T Consensus       242 ~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          242 EIWARFLAFESNI-GDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence            4555555544333 77777777777766653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=5.9e-15  Score=120.55  Aligned_cols=169  Identities=17%  Similarity=0.123  Sum_probs=108.5

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------K   74 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~   74 (350)
                      +..++..+...+...|++++|..+|+++..        ..+....++..+..++...|++++|...+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            445566677777777777777777777644        23344566777777777777777777777776643      1


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---
Q 018782           75 -CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI------GA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY---  143 (350)
Q Consensus        75 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  143 (350)
                       .+....++..+...+...|++++|...++++.+.      +. +.....+..+...+...|++++|..+++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             1223456667777777777777777777777653      11 122345666667777777777777777766543   


Q ss_pred             ---C-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          144 ---N-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       144 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                         + .+....++..+..++...|++++|...++++.+
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               1 122334566666777777777777777776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.61  E-value=1.2e-13  Score=119.62  Aligned_cols=215  Identities=13%  Similarity=0.036  Sum_probs=185.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL  172 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  172 (350)
                      .+++++..++..... .+.+...+..+...+...|++ ++|+..|++..+.. +.+..+|..+..+|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356777777776654 245778899999999999999 99999999998865 446889999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhcc---------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc--------CCH
Q 018782          173 DEMIERGANPDEWSYNAILAYHCDR---------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV--------GRF  235 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  235 (350)
                      ++..+..  |+...+..+...+...         |++++|...+++..+... .+...|..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence            9999874  6678889999999999         999999999999998653 4678899999999998        999


Q ss_pred             hHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782          236 DRATEVWESMEKRGFYP----SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       236 ~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  311 (350)
                      ++|...|++..+.  .|    +...+..+...+... |++++|...|++..+.. +.+...+..+..++...|++++|.+
T Consensus       238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999986  34    677788888777766 99999999999999886 6788899999999999999999998


Q ss_pred             HHHHhh
Q 018782          312 LADKME  317 (350)
Q Consensus       312 ~~~~~~  317 (350)
                      .+.++.
T Consensus       314 ~~~~~~  319 (474)
T 4abn_A          314 SKGKTK  319 (474)
T ss_dssp             HTTTCC
T ss_pred             Hhcccc
Confidence            776664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.61  E-value=5.2e-12  Score=117.41  Aligned_cols=254  Identities=13%  Similarity=0.111  Sum_probs=136.4

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGM  101 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  101 (350)
                      ..+++++|.++.+++.     ++.+|..+..++...|++++|++.|.+.      -+...|..++.++.+.|++++|.+.
T Consensus      1088 ~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            4455555555555442     3455555555555556666665555432      1455555555555566666666655


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHHhcCCHh----------------------------HHHHHHHHHhhCCCCccHHHHH
Q 018782          102 LREMRSIGAEPDAFSYSIFIHAFCEANDIH----------------------------SVFRVLDSMKRYNLVPNVFTYN  153 (350)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~a~~~~~~~~~~~~~~~~~~~~  153 (350)
                      |...++..  +++...+.++.+|++.++++                            +|..+|...         ..|.
T Consensus      1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A         1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred             HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence            55555432  22222223455555555444                            444444432         2444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG  233 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  233 (350)
                      .+..++.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......     +..+...+..++..|.+.|
T Consensus      1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A         1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcC
Confidence            4444444444444444444443      1334444444555555554444443332     2234456667888888888


Q ss_pred             CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCCh
Q 018782          234 RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMVDEGIPP------YSSTVEMLRNRLVGLGFL  306 (350)
Q Consensus       234 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~  306 (350)
                      .+++|..+++...... .-....|+-+...+++. .++..++.+.|..-  -++++      +...|..++..|.+.|++
T Consensus      1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A         1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred             CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence            8888888887776543 22334454444444432 24444444444422  22333      567788888999999999


Q ss_pred             hHHHH
Q 018782          307 DIIEI  311 (350)
Q Consensus       307 ~~a~~  311 (350)
                      +.|..
T Consensus      1372 dnA~~ 1376 (1630)
T 1xi4_A         1372 DNAII 1376 (1630)
T ss_pred             HHHHH
Confidence            98883

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.60  E-value=7e-13  Score=111.56  Aligned_cols=310  Identities=12%  Similarity=-0.011  Sum_probs=211.5

Q ss_pred             CCcCHhhHHHHHHHH--HccCChHHHHHHHHHhhh---cCC--CCHHHHHHHHHH--HhccCCHHHHH---------HHH
Q 018782            6 IKPSIYDLDQLLHAL--CKRKHVKVAHQFFDNAKH---EFT--PTVKTYSILVRG--LGDVGELSEAR---------KLF   67 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~   67 (350)
                      ..|+..+-..+-..|  ...+++++|.++++.+..   ...  ++...|..++..  ....+.+..+.         +.+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            445666666666676  789999999999999755   222  233334444432  11112222222         566


Q ss_pred             HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHhHHHHHHH
Q 018782           68 DEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AFSYSIFIHAFCEANDIHSVFRVLD  138 (350)
Q Consensus        68 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  138 (350)
                      +.+.....+.+    ...+......+...|++++|+..|++..+... .++    ..++..+...|...|+++.|...++
T Consensus        86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            66543211111    11233455667789999999999999986421 122    3477888999999999999999999


Q ss_pred             HHhhC----CC-C-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHhcccCHHHHHHHH
Q 018782          139 SMKRY----NL-V-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG--AN---PDEWSYNAILAYHCDRAEVNMALRLI  207 (350)
Q Consensus       139 ~~~~~----~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~ll~~~~~~~~~~~a~~~~  207 (350)
                      +..+.    +. . ....+++.+..+|...|++++|...+++..+..  ..   ....++..+...|...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            87542    11 1 125578889999999999999999999887531  11   12346777888899999999999999


Q ss_pred             HHHHh-----CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhhccCc---HHHHHH
Q 018782          208 TRMTK-----ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF---YPSVSTYSVMVHGLCKKKGK---LEEACK  276 (350)
Q Consensus       208 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~---~~~a~~  276 (350)
                      ++...     ... ....++..+..++.+.|++++|...+++..+...   .|........+.......++   +.+|+.
T Consensus       246 ~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          246 QKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            99877     433 3367788899999999999999999999886421   23333223334444444477   777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .+++..  ..+.....+..+...|...|++++|...+++..+
T Consensus       325 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          325 YFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777621  2223445677899999999999999999998865

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.58  E-value=3.5e-14  Score=115.95  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=119.0

Q ss_pred             cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 018782           39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-------KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI---  108 (350)
Q Consensus        39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  108 (350)
                      ..|.+..++..+...+...|++++|..+++++.+.       ..+....++..+..++...|++++|...+++..+.   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34556778888899999999999999999888763       23334667788888888899999998888888753   


Q ss_pred             ---CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC------CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          109 ---GA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY------NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       109 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                         +. +....++..+...+...|++++|...++++.+.      +. +....++..+...+...|++++|...++++.+
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               11 223456677777888888888888888777543      11 22345566677777777777777777777665


Q ss_pred             c------CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          178 R------GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       178 ~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      .      +..| ...++..+...+...|++++|...++++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3      1111 233455566666666677766666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.57  E-value=4.5e-12  Score=109.02  Aligned_cols=237  Identities=10%  Similarity=0.057  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHhhCCCCccHHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN---DIHSVFRVLDSMKRYNLVPNVFTYNCII  156 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~  156 (350)
                      ..+..+...|...+.++++......+.+.-...++..+..+...|...|   +.++|+..|++..+.| +++...+..+.
T Consensus       142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg  220 (452)
T 3e4b_A          142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA  220 (452)
T ss_dssp             THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence            3444455555555543333333222221111223336777888888888   8888888888888877 45666556666


Q ss_pred             HHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 018782          157 RKLCKN----EKVEEAYQLLDEMIERGANPDEWSYNAILAY-H--CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLL  229 (350)
Q Consensus       157 ~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  229 (350)
                      ..|...    +++++|...|++.. .|   +...+..+... +  ...+++++|...|++..+.|   +...+..|...|
T Consensus       221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y  293 (452)
T 3e4b_A          221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY  293 (452)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            666554    68888888888877 32   44555556555 3  45788888999888888765   556677777777


Q ss_pred             HHcC-----CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782          230 VRVG-----RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV  301 (350)
Q Consensus       230 ~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  301 (350)
                      . .|     ++++|...|++.. .   -+......+-..|..-   ..++++|..+|++..+.|   ++.....+...|.
T Consensus       294 ~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          294 Y-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS  365 (452)
T ss_dssp             H-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred             H-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence            6 45     8888888888877 3   2445555555444331   138888999998888877   3444556666666


Q ss_pred             c----CCChhHHHHHHHHhhccCCCcHHHHHHHhc
Q 018782          302 G----LGFLDIIEILADKMERSTSCTIQELANAMR  332 (350)
Q Consensus       302 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  332 (350)
                      .    ..+.++|..+++...+.+.......+..+.
T Consensus       366 ~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~  400 (452)
T 3e4b_A          366 QGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLE  400 (452)
T ss_dssp             SCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4    458888888888888776555554444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.56  E-value=1.2e-12  Score=112.47  Aligned_cols=289  Identities=11%  Similarity=0.064  Sum_probs=179.6

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL---SEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      +...+.+.|++++|.++|+.....  .++..+..+...|...|+.   ++|...|++..+.    ++..+..+...+...
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            556677888999999999887653  2344555666667777777   8888888887754    455566666655554


Q ss_pred             C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-----------------------------------cCCHh-
Q 018782           93 G-----NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE-----------------------------------ANDIH-  131 (350)
Q Consensus        93 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~~~~-  131 (350)
                      +     ++++|+..|++..+.|.. +  .+..|...|..                                   .+.++ 
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence            4     678888888888776532 2  33334444433                                   33222 


Q ss_pred             ---HHHHHHHHHhhCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----cCHH
Q 018782          132 ---SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE---KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR----AEVN  201 (350)
Q Consensus       132 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~  201 (350)
                         .+..+++....    .+...+..+...|...|   +.++|+..|++..+.|.. +...+..+...|...    ++++
T Consensus       160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence               22223333222    23337778888888888   899999999999888744 555555666666554    6899


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHH-H--HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC-----cHHH
Q 018782          202 MALRLITRMTKENVMPDRHTYNMVLKL-L--VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG-----KLEE  273 (350)
Q Consensus       202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~~  273 (350)
                      +|...|+... .   -+...+..+... +  ...+++++|...|++..+.|   +...+..+-..|. . |     ++++
T Consensus       235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~-G~g~~~d~~~  305 (452)
T 3e4b_A          235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E-GKWVPADAKA  305 (452)
T ss_dssp             HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H-CSSSCCCHHH
T ss_pred             HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c-CCCCCCCHHH
Confidence            9999999987 3   345666667766 4  46889999999999998875   5556666655554 3 5     9999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccCCCcHHHHHHHh
Q 018782          274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERSTSCTIQELANAM  331 (350)
Q Consensus       274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  331 (350)
                      |+.+|++.. .   -++.....+...|..    ..++++|..++++..+.+.......+..+
T Consensus       306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~  363 (452)
T 3e4b_A          306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL  363 (452)
T ss_dssp             HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            999999887 4   477888888888876    34899999999998877655444433333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=1.4e-12  Score=97.79  Aligned_cols=164  Identities=11%  Similarity=-0.019  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      .+..+...+...|++++|...++.+....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            445555666666777777777766665555566666666666667777777777776666552 2355666666666666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus        89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666666542 2345555566666666666666666666665543 33455566666666666666666666


Q ss_pred             HHHHHHc
Q 018782          172 LDEMIER  178 (350)
Q Consensus       172 ~~~~~~~  178 (350)
                      ++++.+.
T Consensus       167 ~~~~~~~  173 (186)
T 3as5_A          167 FKKANEL  173 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=4.5e-12  Score=98.67  Aligned_cols=196  Identities=13%  Similarity=0.006  Sum_probs=155.0

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFT-PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      .|+..+......+...|++++|...|+......| ++...+..+..++...|++++|++.|++..+.... +..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4678888889999999999999999999888666 88888888999999999999999999999987443 678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc--cHHHHHHHHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP--NVFTYNCIIR  157 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  157 (350)
                      .++...|++++|+..+++..+.. +.+.       ..|..+...+...|++++|...|++..+.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999999863 2344       457788888999999999999999998864 23  3567777777


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                      ++...|     ...++++...+.. +...|.....  ...+.+++|...+++..+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence            776544     3445555554322 4444544432  34567899999999998864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.53  E-value=1.2e-12  Score=110.26  Aligned_cols=226  Identities=8%  Similarity=0.009  Sum_probs=111.8

Q ss_pred             HHHHccCChHHHHHHHHHhhhc---CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CCHHHHHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHE---FTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCP------VDILAHNSL   85 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l   85 (350)
                      ..+...|++++|...|++....   .+.   ...++..+..++...|+++.|...+++..+....      ....+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3445566666666666665331   111   2345666666666666666666666665432100      013345556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CC-CccHHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NL-VPNVFTYNCI  155 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l  155 (350)
                      ..+|...|++++|+..+++..+.... ++    ..++..+..+|...|++++|...+++..+.    +. +....++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            66666666666666666665532100 11    124555566666666666666666655441    11 2234455555


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCCCCC-ChhHHHHHHH
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERG----ANPDEWSYNAILAYHCDRAE---VNMALRLITRMTKENVMP-DRHTYNMVLK  227 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  227 (350)
                      ..++.+.|++++|...+++..+..    -......+..+...+...|+   .++|+.+++..   +..| ....+..+..
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence            666666666666666665554321    00011123334444445555   44444444333   1111 1223444555


Q ss_pred             HHHHcCCHhHHHHHHHHHH
Q 018782          228 LLVRVGRFDRATEVWESME  246 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~  246 (350)
                      .|...|++++|...+++..
T Consensus       348 ~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.53  E-value=1.5e-11  Score=103.16  Aligned_cols=299  Identities=12%  Similarity=0.075  Sum_probs=193.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCH----HHHHH
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTV-----KTYSILVRGLGDVGELSEARKLFDEMLERKCP-VDI----LAHNS   84 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~   84 (350)
                      .....+...|++++|...++......+++.     .++..+...+...|++++|...+++....... .+.    .++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            334556678999999999988766433332     24667777888889999999999887653111 122    23566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC----CccHHHHH
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSI----GAE--P-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL----VPNVFTYN  153 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~  153 (350)
                      +...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++......    .....++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            777888899999999998887652    221  2 234556677888888999999999988765321    11235677


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHhcccCHHHHHHHHHHHHhCCCCCC---hhHHHH
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDE-WSYN-----AILAYHCDRAEVNMALRLITRMTKENVMPD---RHTYNM  224 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~  224 (350)
                      .+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...++........+.   ...+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            7778888899999999999887754222211 1222     223346688899999998888765432211   224566


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhc----CCCCCHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782          225 VLKLLVRVGRFDRATEVWESMEKR----GFYPSVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR  299 (350)
Q Consensus       225 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  299 (350)
                      +...+...|++++|...+++....    |..++.. .+..+...+... |+.++|...+++..... ++     ......
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~~-~~-----~g~~~~  331 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-GRKSDAQRVLLDALKLA-NR-----TGFISH  331 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH-HH-----HCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHh-cc-----ccHHHH
Confidence            778888889999999988887642    2111222 333344444444 88999999888887643 11     112234


Q ss_pred             HHcCCChhHHHHHHHHhhccCCC
Q 018782          300 LVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       300 ~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      +...|  +....+++.+....+.
T Consensus       332 ~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          332 FVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHcc--HHHHHHHHHHHhCCCC
Confidence            44455  6677777777766553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.53  E-value=1.1e-11  Score=103.97  Aligned_cols=273  Identities=12%  Similarity=0.067  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----Hh
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL----AHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AF  115 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~  115 (350)
                      .........+...|++++|...+++........+..    +++.+...+...|++++|...+++...... ..+    ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            445556667778999999999999988764333332    566777889999999999999999875311 112    23


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC--c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV--P-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP----DE  184 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~  184 (350)
                      ++..+...+...|++++|...+++..+.    +..  | ...++..+...+...|++++|...+++........    ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            4567888899999999999999987542    222  2 34566778889999999999999999988653321    23


Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC-hhHHH-----HHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CHH
Q 018782          185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD-RHTYN-----MVLKLLVRVGRFDRATEVWESMEKRGFYP---SVS  255 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~  255 (350)
                      .++..+...+...|++++|...++........++ ...+.     ..+..+...|++++|...+++.......+   ...
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            5677788889999999999999998865421111 11221     23345779999999999999987643221   123


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          256 TYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIPPYS-STVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .+..+...+... |++++|...+++....    +.+++. ..+..+..++...|+.++|...+++...
T Consensus       255 ~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          255 QWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455566666655 9999999999987543    322233 3677788899999999999999988754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=1e-12  Score=118.42  Aligned_cols=167  Identities=13%  Similarity=0.062  Sum_probs=144.4

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      -++..|+.+..++.+.|++++|++.|++..+..|.+..+|..+..+|.+.|++++|++.|++.++.... +..+|..+..
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            346778899999999999999999999988877888999999999999999999999999999887543 7889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782           88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE  167 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  167 (350)
                      ++...|++++|++.|++..+.. +-+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999998863 3356788899999999999999999999988765 4467888899999999999999


Q ss_pred             HHHHHHHHHH
Q 018782          168 AYQLLDEMIE  177 (350)
Q Consensus       168 a~~~~~~~~~  177 (350)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888887754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=1.5e-12  Score=117.33  Aligned_cols=169  Identities=14%  Similarity=0.089  Sum_probs=146.2

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782           40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI  119 (350)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  119 (350)
                      .|.++.+|+.|..++.+.|++++|++.|++.++.... +..+|+.+..++.+.|++++|++.|++.++.. +-+...|..
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n   82 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN   82 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            4567889999999999999999999999999987443 78899999999999999999999999998864 335778999


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  199 (350)
                      +..++...|++++|+..|++..+.. +-+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence            9999999999999999999998865 446788999999999999999999999999988544 67888899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 018782          200 VNMALRLITRMTK  212 (350)
Q Consensus       200 ~~~a~~~~~~~~~  212 (350)
                      +++|.+.++++.+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=6.8e-11  Score=91.90  Aligned_cols=204  Identities=11%  Similarity=-0.005  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK  158 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  158 (350)
                      +..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+..+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   85 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence            344444444444444444444444444443222333344444444444445555554444444432 2233444444455


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHH
Q 018782          159 LCKNEKVEEAYQLLDEMIERGANPDE-------WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD---RHTYNMVLKL  228 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~  228 (350)
                      +...|++++|...+++..+..+. +.       ..|..+...+...|++++|...++...+.  .|+   ...+..+..+
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence            55555555555555555444221 22       23444445555566666666666666553  232   3444445555


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML  296 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  296 (350)
                      +...     +..+++++...+ ..+...+......   ..+.+++|+..+++..+.. |.+..+...+
T Consensus       163 ~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l  220 (228)
T 4i17_A          163 FYNN-----GADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ  220 (228)
T ss_dssp             HHHH-----HHHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHH-----HHHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            4432     233344444332 1233334333322   2256677777777776664 4444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=5.8e-12  Score=94.34  Aligned_cols=164  Identities=14%  Similarity=0.068  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAF  124 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  124 (350)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345555556666666666666666655542 2245555666666666666666666666665542 23444555555555


Q ss_pred             HhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782          125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  204 (350)
                      ...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence            55566666666655554432 234445555555555555555555555555544321 3444444455555555555555


Q ss_pred             HHHHHHHh
Q 018782          205 RLITRMTK  212 (350)
Q Consensus       205 ~~~~~~~~  212 (350)
                      ..++.+.+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.46  E-value=7.5e-13  Score=106.35  Aligned_cols=226  Identities=15%  Similarity=0.065  Sum_probs=144.4

Q ss_pred             HccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCCHHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------K-CPVDILAHNSL   85 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l   85 (350)
                      ...|++++|..+|++...        ..+....++..+..++...|++++|+..+++..+.      + .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            456788888888877643        12345678889999999999999999999988754      1 12245678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC------C-CCccHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSI------G-AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY------N-LVPNVFT  151 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  151 (350)
                      ..++...|++++|.+.+++..+.      . .+....++..+...+...|++++|..++++..+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999999888764      1 1223457778888888899999999888887654      1 1223567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHhcccCH------HHHHHHHHHHHhCCCCC
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIER-------GANPD-EWSYNAILAYHCDRAEV------NMALRLITRMTKENVMP  217 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~  217 (350)
                      +..+..++...|++++|...+++..+.       ...+. ...+..+.......+..      ..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            778888888888888888888887653       11111 22232222222222221      112212111111 0111


Q ss_pred             ChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          218 DRHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       218 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      ...++..+..+|...|++++|..++++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            234566677777777777777777776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.44  E-value=2.8e-11  Score=101.80  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=111.0

Q ss_pred             HHHccCChHHHHHHHHHhhhc---CC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--C----CCHHHHHHHH
Q 018782           19 ALCKRKHVKVAHQFFDNAKHE---FT---PTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--P----VDILAHNSLL   86 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~l~   86 (350)
                      .+...|++++|...|++....   .+   ....++..+..++...|+++.|...+++..+...  .    ....+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            344566666666666665331   11   1234555666666666666666666666543210  0    0133455566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCccHHHHHHHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSI----GAE-PDAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNLVPNVFTYNCII  156 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  156 (350)
                      .++...|++++|.+.|++..+.    +.+ ....++..+..+|...|++++|...+++..+     .. +....++..+.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la  268 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence            6666666666666666655432    100 0123455555666666666666666665544     22 22344555556


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCCCCC-ChhHHHHHHHH
Q 018782          157 RKLCKNEKVEEAYQLLDEMIERGAN---P-DEWSYNAILAYHCDRAE---VNMALRLITRMTKENVMP-DRHTYNMVLKL  228 (350)
Q Consensus       157 ~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~  228 (350)
                      .++.+.|++++|...+++..+....   + ....+..+...+...++   ..+|+..++.   .+..| ....+..+...
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence            6666666666666666665543211   1 12223333334444444   4444444443   11111 12234445555


Q ss_pred             HHHcCCHhHHHHHHHHHH
Q 018782          229 LVRVGRFDRATEVWESME  246 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~  246 (350)
                      |...|++++|...|++..
T Consensus       346 y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            555666666665555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.44  E-value=8.6e-10  Score=98.43  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=82.7

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCC-CCCHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKC-PVDILAH   82 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~   82 (350)
                      +-|..+|..++..+.+.+.++.+..+|+++...+|.+...|...+..-.+.++   ++.+..+|++...... +|++..|
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            45777888899988888999999999999988888899999998888888888   9999999999887631 3688888


Q ss_pred             HHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HhhHHHHHH
Q 018782           83 NSLLEAMCKAGNI--------DEAHGMLREMRS-IGA-EPD-AFSYSIFIH  122 (350)
Q Consensus        83 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~  122 (350)
                      ...+....+.++.        +.+.++|+.... .|. .++ ...|...+.
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~  193 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH  193 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            7777665554442        334466666553 344 333 345554444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.44  E-value=2e-11  Score=98.80  Aligned_cols=166  Identities=11%  Similarity=0.047  Sum_probs=82.5

Q ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782           28 VAHQFFDNAKHEFTPTVKTYSILVRGLGDV-G-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREM  105 (350)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  105 (350)
                      +|.+++.+..+..+++...| .+   +... + ++++|...|++.               ...|...|++++|...|.+.
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence            45666666666555433333 22   2211 2 477777776665               33456677777777777766


Q ss_pred             HhC----CCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHcc-CCHHHHHHHHHH
Q 018782          106 RSI----GAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVP-NVFTYNCIIRKLCKN-EKVEEAYQLLDE  174 (350)
Q Consensus       106 ~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~a~~~~~~  174 (350)
                      .+.    |.+++ ..+|+.+..+|...|++++|+..+++..+.    |-.. -..++..+..+|... |++++|+..|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            542    21111 345666666666666666666666665432    1000 023444555555553 555555555555


Q ss_pred             HHHcCCCC-C----HHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          175 MIERGANP-D----EWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       175 ~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      ..+..... +    ..++..+...+...|++++|...++....
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44321100 0    12334444444444444444444444444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.43  E-value=1.3e-11  Score=99.87  Aligned_cols=210  Identities=10%  Similarity=0.000  Sum_probs=124.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCcc-HHHHHHHHHHHHccCCHHHH
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVPN-VFTYNCIIRKLCKNEKVEEA  168 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a  168 (350)
                      ++++|...|.+.               ...|...|++++|...|++..+.    |-++. ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            367777777665               33456677777777777766432    21111 45677777777777777777


Q ss_pred             HHHHHHHHHcCCCC-C----HHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHHcCCHhH
Q 018782          169 YQLLDEMIERGANP-D----EWSYNAILAYHCDR-AEVNMALRLITRMTKENVMP-D----RHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       169 ~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  237 (350)
                      +..+++..+..... +    ..++..+...|... |++++|+..+++..+..... +    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            77777765431110 1    34566677777774 77777777777766531110 1    2456677777777777777


Q ss_pred             HHHHHHHHHhcCCCCCH------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--cC
Q 018782          238 ATEVWESMEKRGFYPSV------STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY------SSTVEMLRNRLV--GL  303 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~  303 (350)
                      |...|++..+.......      ..+..+..++... |++++|...|++..+..  |+      ...+..++.++.  ..
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~  253 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS  253 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence            77777777764322111      1334444444444 77777777777776543  21      123444555554  45


Q ss_pred             CChhHHHHHHHHhhccCC
Q 018782          304 GFLDIIEILADKMERSTS  321 (350)
Q Consensus       304 g~~~~a~~~~~~~~~~~~  321 (350)
                      +++++|+..|+++...++
T Consensus       254 ~~~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          254 EQLSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             TTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHhccCCccHH
Confidence            667777777777666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.43  E-value=1.3e-10  Score=92.55  Aligned_cols=144  Identities=10%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI  176 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  176 (350)
                      |+..|++..+.+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444444444432 23333334445555555555555555555444331 1234444455555555555555555555554


Q ss_pred             HcCCCC-----CHHHHHHHHHHHh--c--ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782          177 ERGANP-----DEWSYNAILAYHC--D--RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME  246 (350)
Q Consensus       177 ~~~~~~-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  246 (350)
                      +.  .|     +..+...+..++.  .  .++...|..+|+++...  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43  22     1233333333311  1  12455555555554432  1221222222334555555555555555433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=3.3e-12  Score=102.59  Aligned_cols=167  Identities=16%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC------CCCC
Q 018782          151 TYNCIIRKLCKNEKVEEAYQLLDEMIER-----GA--NPDEWSYNAILAYHCDRAEVNMALRLITRMTKE------NVMP  217 (350)
Q Consensus       151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~  217 (350)
                      ++..+..++...|++++|...+++....     +.  .....++..+...+...|++++|...+++..+.      +..|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4444444455555555555554444332     00  112334444555555555555555555554432      0011


Q ss_pred             -ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHhhc------cCcHHHHHHHHHHHHh
Q 018782          218 -DRHTYNMVLKLLVRVGRFDRATEVWESMEKR-------GFYPSVSTYSVMVHGLCKK------KGKLEEACKYFEMMVD  283 (350)
Q Consensus       218 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~------~~~~~~a~~~~~~~~~  283 (350)
                       ...++..+..++...|++++|...++++.+.       ...+....+...+..+...      ...+..+...++....
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence             2345566666666777777777776666542       1112211111112111111      1122222222222211


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          284 EGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      . .+....++..+..+|...|++++|..++++..+
T Consensus       247 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          247 D-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             C-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             C-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1 123445677788888888888888888887654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=7.9e-11  Score=93.61  Aligned_cols=208  Identities=10%  Similarity=-0.012  Sum_probs=116.4

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHN   83 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~   83 (350)
                      ++..+..+...+...|++++|...|+.+....|.+   ...+..+..++...|++++|+..|++..+..+.  ....++.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            44555566666777777777777777776655555   666777777777777777777777777765321  1244566


Q ss_pred             HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           84 SLLEAMCK--------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        84 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      .+..++..        .|++++|+..|+++.+..+ .+......+...              ..+..    .-...+..+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~--------------~~~~~----~~~~~~~~l  154 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKI--------------RELRA----KLARKQYEA  154 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHH--------------HHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHH--------------HHHHH----HHHHHHHHH
Confidence            66666766        7777777777777766421 122222111000              00000    000113445


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------cCHHHHHHHHHHHHhCCCCCCh----
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERGANP--DEWSYNAILAYHCDR----------AEVNMALRLITRMTKENVMPDR----  219 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~----  219 (350)
                      ..+|.+.|++++|...|+++.+..+..  ....+..+..++...          |++++|...++.+.+..  |+.    
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~  232 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLR  232 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHH
Confidence            566667777777777777766653221  123455555555544          66677777777766643  332    


Q ss_pred             hHHHHHHHHHHHcCCHhH
Q 018782          220 HTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       220 ~~~~~l~~~~~~~~~~~~  237 (350)
                      .....+...+...+++++
T Consensus       233 ~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          233 TAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            233444444444444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=1.4e-10  Score=92.08  Aligned_cols=188  Identities=10%  Similarity=0.021  Sum_probs=128.7

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHh
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EP-DAF  115 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~  115 (350)
                      +.++..+..+...+.+.|++++|...|+++.+..+. +   ...+..+..++...|++++|+..|++..+... .| ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            456677777888888888888888888888876332 3   66777788888888888888888888877532 11 234


Q ss_pred             hHHHHHHHHHh--------cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 018782          116 SYSIFIHAFCE--------ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSY  187 (350)
Q Consensus       116 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  187 (350)
                      .+..+..++..        .|++++|...|+++.+.. +.+......+..              +..+...    -...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence            56666777777        777888888887776643 112222222111              1111110    01124


Q ss_pred             HHHHHHHhcccCHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHHc----------CCHhHHHHHHHHHHhc
Q 018782          188 NAILAYHCDRAEVNMALRLITRMTKENVMP--DRHTYNMVLKLLVRV----------GRFDRATEVWESMEKR  248 (350)
Q Consensus       188 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  248 (350)
                      ..+...+...|++++|...|+.+.+..+..  ....+..+..+|...          |++++|...|+++.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            567788899999999999999998864321  245677888888866          8999999999999976

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=1.4e-10  Score=88.79  Aligned_cols=164  Identities=11%  Similarity=0.057  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhcC
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSI----------------LVRGLGDVGELSEARKLFDEMLERK   74 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~   74 (350)
                      ..+......+...|++++|...|+......|.++..|..                +..++...|++++|+..|++..+..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            344445556677888888888888877655656666666                6666666666666666666666553


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HhHHHHHHHHHhhCCCCccHHHH
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND--IHSVFRVLDSMKRYNLVPNVFTY  152 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~  152 (350)
                      +. +...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|+  ...+...++....  ..|....+
T Consensus        85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~  160 (208)
T 3urz_A           85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR  160 (208)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence            22 55566666666666666666666666666542 2234455555555544332  2233334433322  12222233


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          153 NCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       153 ~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      .....++...|++++|...|++..+.
T Consensus       161 ~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          161 YRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            33334444455556666666555544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=6.3e-11  Score=107.10  Aligned_cols=154  Identities=16%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             HccCChHHHHHHHHHhh--------hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           21 CKRKHVKVAHQFFDNAK--------HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      ...|++++|++.++.+.        ...|.+...+..+..++...|++++|++.|++..+.... +...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence            44455555555555544        333444455555555555555555555555555544222 444555555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL  172 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  172 (350)
                      |++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|...|
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555555432 1233444455555555555555 55555554433 223444555555555555555555555


Q ss_pred             HHHHHc
Q 018782          173 DEMIER  178 (350)
Q Consensus       173 ~~~~~~  178 (350)
                      +++.+.
T Consensus       558 ~~al~l  563 (681)
T 2pzi_A          558 DEVPPT  563 (681)
T ss_dssp             HTSCTT
T ss_pred             Hhhccc
Confidence            554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=3.9e-10  Score=79.38  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=54.2

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782           48 SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA  127 (350)
Q Consensus        48 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (350)
                      ..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            3344444444444444444444443321 133444444444444444444444444444332 12233344444444444


Q ss_pred             CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      |++++|..+++++.+.. +.+..++..+...+...|++++|...++++..
T Consensus        83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            44444444444443332 22333444444444444444444444444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=2.8e-10  Score=80.11  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      ..+..+...+...|++++|..+++.+....+.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            3567788899999999999999999987667788999999999999999999999999998874 347788999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            9999999999999998864 3467788889999999999999999999987643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.29  E-value=5.1e-11  Score=85.98  Aligned_cols=146  Identities=11%  Similarity=-0.024  Sum_probs=106.4

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      |...+...|++++|+..++......|.++..+..+..+|.+.|++++|++.|++.++..+. +..+|..+..++...|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            3445566788888888888876655566677778888888888888888888888877443 788888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH-HHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV-LDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      ++|+..|++..+.. +-+...+..+...+.+.|+.+++... +++..+.. |.+..+|......+...|+
T Consensus        82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            88888888888753 23566788888888888888765554 57776653 3456667666666665553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.28  E-value=1.8e-08  Score=80.96  Aligned_cols=221  Identities=9%  Similarity=0.077  Sum_probs=145.9

Q ss_pred             cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---C
Q 018782           23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG--ELSEARKLFDEMLERKCPVDILAHNSLLEAM----CKA---G   93 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~   93 (350)
                      ....++|+..++.+..-.|.+..+|+.-..++...|  +++++++.++.+...+++ +..+|+.-...+    ...   +
T Consensus        46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence            334467888888887777778888888888887777  888888888888877554 666666554444    444   6


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC------H
Q 018782           94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH--SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK------V  165 (350)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~  165 (350)
                      ++++++++++.+.+.. +-+..+|+.-.-.....|.++  +++..++++.+.. +-|..+|+.-...+.+.|.      +
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            7778888888887753 346667776666666677776  7777777777665 3466666666655666555      6


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH-HHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM-ALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDRATEVW  242 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~  242 (350)
                      +++++.++.+....+. |...|+.+-..+.+.|+... +..+...+...+  -..+...+..+..++.+.|+.++|.+++
T Consensus       203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            6777777777766544 66666666666655555333 334444443322  1234556666666666667777777777


Q ss_pred             HHHHh
Q 018782          243 ESMEK  247 (350)
Q Consensus       243 ~~~~~  247 (350)
                      +.+.+
T Consensus       282 ~~l~~  286 (306)
T 3dra_A          282 DLLKS  286 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.28  E-value=5.7e-10  Score=85.33  Aligned_cols=130  Identities=10%  Similarity=0.069  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  199 (350)
                      +..++.+.|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+. +..++..+..++...++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence            5555666666666666666665543 334555566666666666666666666666655332 44555555555443332


Q ss_pred             --HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          200 --VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       200 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                        ...+...++....  ..|....+.....++...|++++|...|++..+.  .|+..
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~  191 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE  191 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence              2233333333321  1122222333344444556666666666666553  45543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.27  E-value=1.7e-09  Score=86.12  Aligned_cols=218  Identities=12%  Similarity=0.087  Sum_probs=153.0

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ..+++...|++...        ...+|....+..+...+ ..+    |+..|+++.+.+ +++..++..+..++...|++
T Consensus        51 ~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~  116 (310)
T 3mv2_B           51 KAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDL  116 (310)
T ss_dssp             HHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence            34677777776642        12234444444444444 222    788888887765 45666677888999999999


Q ss_pred             HHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-----cHHHHHHHHHHH--H--ccCCH
Q 018782           96 DEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-----NVFTYNCIIRKL--C--KNEKV  165 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~--~~g~~  165 (350)
                      ++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+.  .|     +..+...+..++  .  ..+++
T Consensus       117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~  194 (310)
T 3mv2_B          117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETA  194 (310)
T ss_dssp             HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccH
Confidence            999999999877653 235667888889999999999999999999775  35     345555555552  2  23489


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC---------CCCChhHHHHHHHHHHHcCCHh
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN---------VMPDRHTYNMVLKLLVRVGRFD  236 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~  236 (350)
                      .+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+..         -+.+..++..++......|+  
T Consensus       195 q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--  270 (310)
T 3mv2_B          195 TSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--  270 (310)
T ss_dssp             THHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence            9999999998765  3453444455558889999999999998765531         12356667566666666786  


Q ss_pred             HHHHHHHHHHhcCCCCCHH
Q 018782          237 RATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       237 ~a~~~~~~~~~~~~~p~~~  255 (350)
                      +|.+++.++.+.  .|+..
T Consensus       271 ~a~~l~~qL~~~--~P~hp  287 (310)
T 3mv2_B          271 DTEDLTNQLVKL--DHEHA  287 (310)
T ss_dssp             TTHHHHHHHHHT--TCCCH
T ss_pred             HHHHHHHHHHHh--CCCCh
Confidence            889999999985  55543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=1.9e-09  Score=83.54  Aligned_cols=187  Identities=5%  Similarity=-0.072  Sum_probs=122.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI--LAHN   83 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~   83 (350)
                      ++..+..+...+...|++++|...|+.+....|.+   ...+..+..++.+.|++++|+..|+++.+..+....  .++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            44566677778888999999999999987754433   467888889999999999999999998876433211  2455


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 018782           84 SLLEAMCK------------------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL  145 (350)
Q Consensus        84 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  145 (350)
                      .+..++..                  .|++++|+..|+++.+.. +-+...........          .+...+     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence            55555543                  456777777777777642 11222221111100          000000     


Q ss_pred             CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782          146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKEN  214 (350)
Q Consensus       146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  214 (350)
                         ......+...|.+.|++++|...|+++.+..+...  ...+..+..++.+.|++++|.+.++.+...+
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               01113456778888899999999988887743311  2457778888888899999999888887764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.24  E-value=2.3e-10  Score=85.08  Aligned_cols=162  Identities=8%  Similarity=-0.012  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA-MC   90 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~   90 (350)
                      .+......+...|++++|...|+.+....|.+...+..+..++...|++++|+..+++......  +...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            4555666777788888888888887766667777788888888888888888888877766532  44333322211 11


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAY  169 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~  169 (350)
                      ..+....|+..+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2222334566677666642 2345666667777777777777777777776654211 2446666677777777777777


Q ss_pred             HHHHHHH
Q 018782          170 QLLDEMI  176 (350)
Q Consensus       170 ~~~~~~~  176 (350)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=3.2e-09  Score=81.38  Aligned_cols=176  Identities=9%  Similarity=0.052  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC----CHHHHHHHHH
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE----KVEEAYQLLD  173 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~  173 (350)
                      |++.|++..+.|   +...+..+...|...+++++|..+|++..+.|   +...+..+...|.. +    ++++|...|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            344444444432   33444445555555555555555555554433   33444444444444 3    5555555555


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHH----cCCHhHHHHHHHH
Q 018782          174 EMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVM-PDRHTYNMVLKLLVR----VGRFDRATEVWES  244 (350)
Q Consensus       174 ~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~  244 (350)
                      +..+.+   +...+..+...|..    .+++++|.++|++..+.+.. .+...+..|...|..    .+++++|...|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            554432   34444444444444    45555555555555554321 013445555555555    4555566666655


Q ss_pred             HHhcCCCCCHHHHHHHHHHHhhccC-----cHHHHHHHHHHHHhCC
Q 018782          245 MEKRGFYPSVSTYSVMVHGLCKKKG-----KLEEACKYFEMMVDEG  285 (350)
Q Consensus       245 ~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~~a~~~~~~~~~~~  285 (350)
                      ..+.  ..+...+..+-..|....|     ++++|..+|++..+.|
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5543  1122233333333332212     5556666666555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.24  E-value=8.3e-10  Score=88.92  Aligned_cols=167  Identities=11%  Similarity=0.083  Sum_probs=113.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH-
Q 018782           76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC-  154 (350)
Q Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  154 (350)
                      +.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++....  |+...... 
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            3455666677777777888888888888777653 3355667777777778888888888887776543  34332222 


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcC
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLVRVG  233 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  233 (350)
                      ....+...++.++|...+++.....+. +...+..+...+...|++++|...+..+.+..... +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            223355666777777777777776443 66777777777778888888888888877754321 2456777788888888


Q ss_pred             CHhHHHHHHHHHH
Q 018782          234 RFDRATEVWESME  246 (350)
Q Consensus       234 ~~~~a~~~~~~~~  246 (350)
                      +.++|...|++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8888877777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=7.6e-10  Score=100.09  Aligned_cols=186  Identities=10%  Similarity=-0.031  Sum_probs=135.9

Q ss_pred             HhcCCHhHHHHHHHHHh--------hCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782          125 CEANDIHSVFRVLDSMK--------RYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD  196 (350)
Q Consensus       125 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  196 (350)
                      ...|++++|+..+++..        +.. +.+...+..+..++...|++++|...++++.+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67788888888888887        432 445677888888888888888888888888877544 67778888888888


Q ss_pred             ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHH
Q 018782          197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACK  276 (350)
Q Consensus       197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~  276 (350)
                      .|++++|.+.|++..+... .+...+..+..++.+.|++++ ...|+++.+... -+...+..+..++... |++++|+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~-g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAE-GDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHc-CCHHHHHH
Confidence            8888888888888887643 356777888888888888888 888888887532 2455666666666655 88888888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCC--------hhHHHHHHHHhh
Q 018782          277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGF--------LDIIEILADKME  317 (350)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~  317 (350)
                      .|+++.+.+ +.+...+..+..++...|+        +++|.+.+..+.
T Consensus       556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          556 TLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            888887765 4456777777777766444        555555555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.23  E-value=4.4e-09  Score=80.60  Aligned_cols=175  Identities=11%  Similarity=0.025  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHH
Q 018782           63 ARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN----DIHSVFRVLD  138 (350)
Q Consensus        63 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~  138 (350)
                      |++.|++..+.|   ++..+..+...+...+++++|+..|++..+.|   +...+..|...|.. +    +.++|..+|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            444555555442   44555555555555555666666665555543   33444445555544 4    5566666666


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----ccCHHHHHHHHHH
Q 018782          139 SMKRYNLVPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCD----RAEVNMALRLITR  209 (350)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~  209 (350)
                      +..+.|   +...+..+...|..    .+++++|...|++..+.+.. .....+..|...|..    .+++++|...|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            555543   34445555555554    55666666666665554321 014455555555554    5566666666666


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHc-C-----CHhHHHHHHHHHHhcC
Q 018782          210 MTKENVMPDRHTYNMVLKLLVRV-G-----RFDRATEVWESMEKRG  249 (350)
Q Consensus       210 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  249 (350)
                      ..+.  ..+...+..|..+|... |     ++++|...|+...+.|
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            6554  12334455555555543 2     5666666666666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.22  E-value=6.1e-10  Score=98.86  Aligned_cols=156  Identities=8%  Similarity=-0.018  Sum_probs=120.0

Q ss_pred             cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML  102 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  102 (350)
                      .|++++|.+.|+++....|.+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            47889999999998877778899999999999999999999999999998743 37889999999999999999999999


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHcC
Q 018782          103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN---EKVEEAYQLLDEMIERG  179 (350)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~  179 (350)
                      ++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...   |+.++|.+.+++..+.+
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            9998864 3467788899999999999999999999998764 44678888899999999   99999999999998875


Q ss_pred             CC
Q 018782          180 AN  181 (350)
Q Consensus       180 ~~  181 (350)
                      ..
T Consensus       159 p~  160 (568)
T 2vsy_A          159 VG  160 (568)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.22  E-value=6.6e-08  Score=77.72  Aligned_cols=234  Identities=9%  Similarity=0.053  Sum_probs=160.5

Q ss_pred             hccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc
Q 018782           55 GDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG--NIDEAHGMLREMRSIGAEPDAFSYSIFIHAF----CEA  127 (350)
Q Consensus        55 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~  127 (350)
                      .+.| ..++|+++++.++..++. +..+|+.--.++...+  +++++++.++.+....+ -+..+|+.-...+    ...
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhc
Confidence            3444 446899999999887544 7778888888888888  89999999999987642 3444555444444    444


Q ss_pred             ---CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC---
Q 018782          128 ---NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE--EAYQLLDEMIERGANPDEWSYNAILAYHCDRAE---  199 (350)
Q Consensus       128 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---  199 (350)
                         +++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++  ++++.++++.+..+. +...|+.-.....+.+.   
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence               67888888888887765 457778877777777778777  888888888887655 77777766666666665   


Q ss_pred             ---HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH-hHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhhccCcHHH
Q 018782          200 ---VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRF-DRATEVWESMEKRG--FYPSVSTYSVMVHGLCKKKGKLEE  273 (350)
Q Consensus       200 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~  273 (350)
                         ++++++.++.++...+ -|...|+.+...+.+.|.. +.+..+..++.+.+  -..+...+..+...+... |+.++
T Consensus       199 ~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~-~~~~~  276 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ-KKYNE  276 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT-TCHHH
T ss_pred             hhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc-CCHHH
Confidence               7777777777777654 4667777777777777663 33555666555432  123556666666666654 77777


Q ss_pred             HHHHHHHHHh-CCCCCCHHHHHH
Q 018782          274 ACKYFEMMVD-EGIPPYSSTVEM  295 (350)
Q Consensus       274 a~~~~~~~~~-~~~~~~~~~~~~  295 (350)
                      |.++++.+.+ .+ |.....|..
T Consensus       277 A~~~~~~l~~~~D-pir~~yW~~  298 (306)
T 3dra_A          277 SRTVYDLLKSKYN-PIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHHHTTC-GGGHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHH
Confidence            7777777765 34 444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.21  E-value=5.8e-10  Score=89.83  Aligned_cols=171  Identities=11%  Similarity=0.012  Sum_probs=137.3

Q ss_pred             hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782           38 HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY  117 (350)
Q Consensus        38 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  117 (350)
                      ...|.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++...  .|+....
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~  187 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQ  187 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHH
Confidence            334667788888999999999999999999999887443 7888999999999999999999999998765  3444433


Q ss_pred             H-HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 018782          118 S-IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHC  195 (350)
Q Consensus       118 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~  195 (350)
                      . .....+...++.+.|...+++..... +.+...+..+..++...|++++|...|.++.+..+.. +...+..+...+.
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            2 23334667788888999999887765 5578888999999999999999999999999875432 2667888999999


Q ss_pred             cccCHHHHHHHHHHHHh
Q 018782          196 DRAEVNMALRLITRMTK  212 (350)
Q Consensus       196 ~~~~~~~a~~~~~~~~~  212 (350)
                      ..|+.+.|...+++...
T Consensus       267 ~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          267 ALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCcHHHHHHHHHH
Confidence            99999999888887653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.20  E-value=3.3e-09  Score=82.12  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=122.0

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 018782          113 DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV-P-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE--WSYN  188 (350)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~  188 (350)
                      +...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445666778888999999999999998775311 1 1357778888999999999999999999887543221  1343


Q ss_pred             HHHHHHhc------------------ccCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782          189 AILAYHCD------------------RAEVNMALRLITRMTKENVMPDR-HTYNMVLKLLVRVGRFDRATEVWESMEKRG  249 (350)
Q Consensus       189 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  249 (350)
                      .+..++..                  .|++++|...|+.+.+..  |+. ..+.......          .+...+..  
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~~--  148 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLAK--  148 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHHH--
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHHH--
Confidence            44444433                  456667777777766643  222 2221111100          00000000  


Q ss_pred             CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS---STVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                            ....+...+... |++++|+..|+++++.. |.++   ..+..+..++.+.|++++|.+.++.+....+..
T Consensus       149 ------~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          149 ------YEYSVAEYYTER-GAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             ------HHHHHHHHHHHH-TCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             ------HHHHHHHHHHHc-CcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                  111233344555 99999999999998874 3333   578889999999999999999999988765543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.20  E-value=3.3e-10  Score=84.20  Aligned_cols=159  Identities=13%  Similarity=0.034  Sum_probs=70.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HH
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA-FC  125 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~  125 (350)
                      +..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..+++.....  |+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            44455555566666666666666554422 245556666666666666666666666655432  232222211111 11


Q ss_pred             hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHH
Q 018782          126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMAL  204 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~  204 (350)
                      ..++...+...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            1111222344444443332 1233444444444444444444444444444432221 1233444444444444444444


Q ss_pred             HHHHH
Q 018782          205 RLITR  209 (350)
Q Consensus       205 ~~~~~  209 (350)
                      ..|++
T Consensus       165 ~~y~~  169 (176)
T 2r5s_A          165 SKYRR  169 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=2.1e-10  Score=82.76  Aligned_cols=143  Identities=8%  Similarity=-0.040  Sum_probs=73.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      ..++...|++++|+..++....... -+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            3444455566666666665544311 123334455566666666666666666665542 23445556666666666666


Q ss_pred             hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782          131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL-LDEMIERGANPDEWSYNAILAYHCDR  197 (350)
Q Consensus       131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~  197 (350)
                      ++|...|++..+.. +-+..++..+..+|.+.|++++|... +++..+..+. +..+|......+...
T Consensus        82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence            66666666655543 23455555555666666665544333 3555554322 344444444443333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=2.2e-09  Score=87.35  Aligned_cols=200  Identities=7%  Similarity=0.003  Sum_probs=115.3

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGM  101 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  101 (350)
                      ..|++++|.+++++..+..+..         .+...++++.|...|.+.               ...|...|++++|...
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            3577888888888876643321         111247778887777764               3456677888888888


Q ss_pred             HHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHccCCHHHHHHH
Q 018782          102 LREMRSI----GAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVP-NVFTYNCIIRKLCKNEKVEEAYQL  171 (350)
Q Consensus       102 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~  171 (350)
                      |.+..+.    +-.. -..+|+.+..+|...|++++|+..|++..+.    |-+. ...++..+..+|.. |++++|+..
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            8877642    1100 1336677777777778888888877766432    2111 13456666666666 777777777


Q ss_pred             HHHHHHcCCCC-C----HHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----CCCC-hhHHHHHHHHHHHcCCHhHHHHH
Q 018782          172 LDEMIERGANP-D----EWSYNAILAYHCDRAEVNMALRLITRMTKEN----VMPD-RHTYNMVLKLLVRVGRFDRATEV  241 (350)
Q Consensus       172 ~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~  241 (350)
                      |++..+..... +    ..++..+...+...|++++|+..+++.....    ..+. ...+..+..++...|++++|...
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77665431110 0    2345555555666666666666666554421    0000 11334444455555666666666


Q ss_pred             HHHHH
Q 018782          242 WESME  246 (350)
Q Consensus       242 ~~~~~  246 (350)
                      |++..
T Consensus       218 ~~~al  222 (307)
T 2ifu_A          218 VRESY  222 (307)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.15  E-value=9.5e-09  Score=91.78  Aligned_cols=233  Identities=11%  Similarity=0.090  Sum_probs=177.5

Q ss_pred             HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782           27 KVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEAR-KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREM  105 (350)
Q Consensus        27 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  105 (350)
                      +.+..+|+++....|..+..|...+..+...|+.++|. ++|++.... .|.+...|...+....+.|+++.|.++|+.+
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44667888888878889999999999999999999996 999998875 4557777888888889999999999999998


Q ss_pred             HhCCC---------CCC------------HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHcc-
Q 018782          106 RSIGA---------EPD------------AFSYSIFIHAFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKN-  162 (350)
Q Consensus       106 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-  162 (350)
                      .+...         .|+            ...|...+....+.|+.+.|..+|....+. + ..+...|...+..-.+. 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence            86310         132            236777788888889999999999999775 2 12334444333333344 


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHHcCCHhHHHH
Q 018782          163 EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP--DRHTYNMVLKLLVRVGRFDRATE  240 (350)
Q Consensus       163 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~  240 (350)
                      ++.+.|..+|+...+.. ..+...|...+......|+.+.|..+|+........+  ....|...+..-.+.|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45899999999988873 3366677788888888899999999999988864321  34578888888888999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHH
Q 018782          241 VWESMEKRGFYPSVSTYSVMVHGL  264 (350)
Q Consensus       241 ~~~~~~~~~~~p~~~~~~~ll~~~  264 (350)
                      +.+++.+.  .|+......++.-|
T Consensus       563 v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          563 LEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHHHh--CCCCcHHHHHHHHh
Confidence            99999986  45655555556554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.13  E-value=4.6e-09  Score=93.21  Aligned_cols=155  Identities=7%  Similarity=-0.021  Sum_probs=120.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782           57 VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV  136 (350)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  136 (350)
                      .|++++|++.|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999999887643 378899999999999999999999999999864 34677889999999999999999999


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---cCHHHHHHHHHHHHhC
Q 018782          137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR---AEVNMALRLITRMTKE  213 (350)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~  213 (350)
                      +++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... +...+..+...+...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998865 456788999999999999999999999999988543 677888899999999   9999999999999886


Q ss_pred             CC
Q 018782          214 NV  215 (350)
Q Consensus       214 ~~  215 (350)
                      +.
T Consensus       158 ~p  159 (568)
T 2vsy_A          158 GV  159 (568)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=3.5e-09  Score=86.20  Aligned_cols=227  Identities=14%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782           56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR  135 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  135 (350)
                      ..|++++|.+++++..+... ..      +   +...++++.|...|.+.               ...|...|++++|..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            35678888888888776421 11      0   11157888888887765               456778899999999


Q ss_pred             HHHHHhhC----CCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcccCHHHHHH
Q 018782          136 VLDSMKRY----NLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA---NPD--EWSYNAILAYHCDRAEVNMALR  205 (350)
Q Consensus       136 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~  205 (350)
                      .|.+..+.    +-. .-..+|+.+..+|...|++++|...+++..+...   .+.  ..++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            99887542    211 1245788889999999999999999998765411   111  3567778888888 99999999


Q ss_pred             HHHHHHhCCCCC-----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhhccCcHHHHH
Q 018782          206 LITRMTKENVMP-----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYPS-VSTYSVMVHGLCKKKGKLEEAC  275 (350)
Q Consensus       206 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~~a~  275 (350)
                      .+++........     ...++..+..++...|++++|...|++..+.    +..+. ...+..+...+... |++++|.
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~  215 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            999977642111     1457888999999999999999999998753    11111 12444455555544 9999999


Q ss_pred             HHHHHHHhCCCCC--C---HHHHHHHHHHHHcCCChhHHHHH
Q 018782          276 KYFEMMVDEGIPP--Y---SSTVEMLRNRLVGLGFLDIIEIL  312 (350)
Q Consensus       276 ~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~  312 (350)
                      ..|++.. .. |.  +   ......++.++ ..|+.+.+..+
T Consensus       216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999998 43 21  1   12345556655 57887777664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.09  E-value=3.2e-07  Score=74.66  Aligned_cols=177  Identities=7%  Similarity=0.016  Sum_probs=127.9

Q ss_pred             HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CH
Q 018782           19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA-G-NI   95 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~   95 (350)
                      .....+..++|+++++.+....|.+..+|+.--.++...| .+++++++++.+....++ +..+|+.-..++... + ++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence            3344555678999999988877888888888888888888 589999999999887655 788888877777766 6 78


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--------HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC---
Q 018782           96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH--------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK---  164 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  164 (350)
                      ++++++++.+.+.. +-|..+|+.-.-.....+.++        ++++.++++.+.. +-|..+|+.....+.+.+.   
T Consensus       142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence            88889999888764 346667766555555555555        7788888877765 4477777777777766665   


Q ss_pred             ----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782          165 ----VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE  199 (350)
Q Consensus       165 ----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  199 (350)
                          ++++++.+.++....+. |...|+-+-..+.+.|+
T Consensus       220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence                57777777777776544 66667665555544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.05  E-value=3.9e-08  Score=75.20  Aligned_cols=129  Identities=13%  Similarity=-0.012  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      .+..+...+...|++++|...|++..   +++...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            34556677778889999998888774   5577888888888888999999999998888764 3477888888888888


Q ss_pred             cCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           92 AGNIDEAHGMLREMRSIGAEP---------------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      .|++++|+..|++..+.....               ....+..+..++...|++++|...|+...+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999988888753211               12566777778888888888888888877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.02  E-value=3.1e-08  Score=80.01  Aligned_cols=202  Identities=10%  Similarity=0.003  Sum_probs=143.0

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----IL   80 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~   80 (350)
                      ..|+..++..+...+...-     ..++..-..........+...+..+...|++++|..++++..+.... |+    ..
T Consensus        42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~  116 (293)
T 3u3w_A           42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ  116 (293)
T ss_dssp             CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence            4688888888887775432     12222221111223445666688889999999999999998875322 22    12


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh----C-CCCc-cH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR----Y-NLVP-NV  149 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~  149 (350)
                      .+..+...+...+++++|+..+++..+.... ++    ..+++.+...|...|++++|...|+++.+    . +..+ ..
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            3345777777888999999999999874322 22    23688899999999999999999998863    1 2122 23


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcccC-HHHHHHHHHHHHh
Q 018782          150 FTYNCIIRKLCKNEKVEEAYQLLDEMIER----GANPD-EWSYNAILAYHCDRAE-VNMALRLITRMTK  212 (350)
Q Consensus       150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~  212 (350)
                      .++..+..+|.+.|++++|...+++..+.    +..+. ..+|..+..++...|+ +++|.+.+++...
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            47888999999999999999999987753    22222 5678888888999994 6999998888754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=6.2e-08  Score=78.23  Aligned_cols=209  Identities=10%  Similarity=0.059  Sum_probs=147.5

Q ss_pred             HHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHH
Q 018782           30 HQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA---HNSLLEAMCKAGNIDEAHGMLREM  105 (350)
Q Consensus        30 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~  105 (350)
                      ...+.++.. ...|+..+...+...+.-.-  +   .++.    .....+...   +...+..+...|++++|..++++.
T Consensus        31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~  101 (293)
T 3u3w_A           31 QSEVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE  101 (293)
T ss_dssp             HHHHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344555555 35688888888887775322  1   1221    112223333   334467888999999999999999


Q ss_pred             HhCCC-CCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-cc----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782          106 RSIGA-EPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV-PN----VFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       106 ~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      .+... .|+.    ..+..+...+...+++++|+..+++..+.... ++    ..+++.+..+|...|++++|...++++
T Consensus       102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            87432 2221    13345777788888999999999999774222 22    346899999999999999999999998


Q ss_pred             HHc-----CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHHcCC-HhHHHHHHH
Q 018782          176 IER-----GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKE----NVMPD-RHTYNMVLKLLVRVGR-FDRATEVWE  243 (350)
Q Consensus       176 ~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~  243 (350)
                      .+.     +..+ ...++..+...|...|++++|...+++..+.    +..+. ..+|..+..++.+.|+ +++|...++
T Consensus       182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~  261 (293)
T 3u3w_A          182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            741     1111 2346788889999999999999999987653    22222 5678899999999995 699999998


Q ss_pred             HHHh
Q 018782          244 SMEK  247 (350)
Q Consensus       244 ~~~~  247 (350)
                      +...
T Consensus       262 ~Al~  265 (293)
T 3u3w_A          262 KASF  265 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.01  E-value=4.6e-08  Score=74.84  Aligned_cols=129  Identities=11%  Similarity=-0.079  Sum_probs=104.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                      .+..+...+...|++++|...|++..    +|+..++..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            45567778888999999999998774    5588889999999999999999999999988764 446678888899999


Q ss_pred             hcCCHhHHHHHHHHHhhCCCCc----------------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          126 EANDIHSVFRVLDSMKRYNLVP----------------NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      ..|++++|...|++..+.. +.                ....+..+..++...|++++|...+++..+...
T Consensus        83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            9999999999999887743 11                236778888888899999999999988887643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.01  E-value=1.1e-08  Score=73.39  Aligned_cols=103  Identities=8%  Similarity=-0.033  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782           40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI  119 (350)
Q Consensus        40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  119 (350)
                      .|.+...+..+...+.+.|++++|+..|++.....+ .+...|..+..++...|++++|+..|++..+.. +.+...+..
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~  109 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH  109 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence            344566777777888888888888888888877643 367778888888888888888888888887753 235567777


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      +..++...|++++|...|++..+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7788888888888888888777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.01  E-value=3e-08  Score=72.45  Aligned_cols=127  Identities=9%  Similarity=0.005  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                      .+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            344444444455555555555555444321 244444455555555555555555555554432 223444444555555


Q ss_pred             hcCCHhHHHHHHHHHhhCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHH
Q 018782          126 EANDIHSVFRVLDSMKRYNLVPNVFTY--NCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ..|++++|...+++..+.. +.+...+  ...+..+...|++++|...+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555554432 1122222  22222244455555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.00  E-value=3.9e-09  Score=84.65  Aligned_cols=99  Identities=17%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..+++..+... .+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            4556677777777888888888888887776667777888888888888888888888888777633 367777777788


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 018782           89 MCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~  108 (350)
                      +...|++++|+..|++..+.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88888888888888777653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.00  E-value=2e-06  Score=74.52  Aligned_cols=297  Identities=8%  Similarity=-0.010  Sum_probs=158.3

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhc-CC-CCCHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-LSEARKLFDEMLER-KC-PVDILAHN   83 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~   83 (350)
                      .--..+|...+..+-. |+++.+..+|++..... |+...|...+....+.+. .+....+|+..... |. +.+...|.
T Consensus        12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~   89 (493)
T 2uy1_A           12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKS-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK   89 (493)
T ss_dssp             CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence            3344556666666654 78999999999987754 588888888887777663 45567778776653 42 33667777


Q ss_pred             HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH------------------------------------
Q 018782           84 SLLEAMC----KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA------------------------------------  123 (350)
Q Consensus        84 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------  123 (350)
                      ..+..+.    ..++.+.+..+|++.+......-...|......                                    
T Consensus        90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~  169 (493)
T 2uy1_A           90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG  169 (493)
T ss_dssp             HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            7776544    245677888888888873211111112111110                                    


Q ss_pred             --------HHh--cCC---------HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 018782          124 --------FCE--AND---------IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE  184 (350)
Q Consensus       124 --------~~~--~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  184 (350)
                              |..  .++         .+.+..+|+++.... +.+...|...+..+.+.|+++.|..++++.... + .+.
T Consensus       170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~  246 (493)
T 2uy1_A          170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGM  246 (493)
T ss_dssp             CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSS
T ss_pred             ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcH
Confidence                    000  011         123445555555432 344556666666667777778888888777776 2 222


Q ss_pred             HHHHHHHHHHhcccCHHHH-HHHHHHHHhCC--------CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          185 WSYNAILAYHCDRAEVNMA-LRLITRMTKEN--------VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                      ..|...    ....+.++. ..+.+......        .......|...+....+.++.+.|..+|+.+ ... ..+..
T Consensus       247 ~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~  320 (493)
T 2uy1_A          247 FLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH  320 (493)
T ss_dssp             HHHHHH----HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred             HHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence            222211    111111111 01111100000        0001233455555555666777777777777 321 12333


Q ss_pred             HHH--HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          256 TYS--VMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       256 ~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      .|.  +.+..  ...++.+.|..+|+...+.. +.++..+...++...+.|+.+.|..+|+++.
T Consensus       321 v~i~~A~lE~--~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~  381 (493)
T 2uy1_A          321 VFIYCAFIEY--YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE  381 (493)
T ss_dssp             HHHHHHHHHH--HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH--HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            332  22221  12235777777777777653 3345555556666666777777777777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.00  E-value=2.9e-08  Score=69.02  Aligned_cols=94  Identities=12%  Similarity=0.021  Sum_probs=47.3

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      +......+.+.|++++|++.|++.....|.++..|..+..++...|++++|+..|++.++.+.. +...|..+..++...
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence            3444445555555555555555544444445555555555555555555555555555444222 444455555555555


Q ss_pred             CCHHHHHHHHHHHHh
Q 018782           93 GNIDEAHGMLREMRS  107 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~  107 (350)
                      |++++|++.|++..+
T Consensus        95 ~~~~~A~~~~~~al~  109 (126)
T 4gco_A           95 REWSKAQRAYEDALQ  109 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.99  E-value=2e-08  Score=69.82  Aligned_cols=98  Identities=8%  Similarity=0.013  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+......+.+.|++++|++.|++.++..+ .+..+|..+..++.+.|++++|+..+++.++.. +.+...|..+..+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~   90 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence            44555666666666666666666666665532 256666666666666666666666666666542 2344556666666


Q ss_pred             HHhcCCHhHHHHHHHHHhhC
Q 018782          124 FCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~  143 (350)
                      +...|++++|...|++..+.
T Consensus        91 ~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            66666666666666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.98  E-value=1.9e-08  Score=70.07  Aligned_cols=117  Identities=12%  Similarity=0.022  Sum_probs=57.6

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ...+..+...+...|+++.|...|+.+....|.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            33444444555555555555555555544444455555555555555555555555555555442 22344555555555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN  128 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (350)
                      ...|++++|...|++..+.. +.+...+..+..++...|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence            55555555555555554432 123334444444444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.98  E-value=2e-06  Score=69.94  Aligned_cols=177  Identities=8%  Similarity=0.028  Sum_probs=127.0

Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-C
Q 018782           53 GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA-N-D  129 (350)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  129 (350)
                      .....+..++|++++++++..+.. +..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-...+... + +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            334455667899999999988655 7788888777777788 5999999999999874 34666777766666666 6 7


Q ss_pred             HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC--
Q 018782          130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE--------EAYQLLDEMIERGANPDEWSYNAILAYHCDRAE--  199 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--  199 (350)
                      .++++.+++.+.+.. +.+..+|+.-.-++.+.|.++        ++++.++++.+..+. +...|+.....+.+.++  
T Consensus       141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence            888999999988765 457777776665555555555        888888888887655 77777777777666664  


Q ss_pred             -----HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782          200 -----VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR  234 (350)
Q Consensus       200 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (350)
                           ++++++.+++.....+ -|...|+.+-..+.+.|.
T Consensus       219 ~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence                 5677777777776543 456666665555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.97  E-value=3.4e-08  Score=69.13  Aligned_cols=100  Identities=12%  Similarity=0.020  Sum_probs=59.5

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      .+...+..+...+...|++++|...|+......+.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~   92 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence            34445555556666666666666666666554455566666666666666666666666666655422 24555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 018782           88 AMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      ++...|++++|.+.|++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            666666666666666665553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.97  E-value=8.7e-09  Score=73.96  Aligned_cols=103  Identities=11%  Similarity=-0.046  Sum_probs=92.6

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+.+.|++++|...|+++....|.++..|..+..++...|++++|+..|++..+..+. ++..|..+..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence            34467778889999999999999999999888999999999999999999999999999999988544 78899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCH
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDA  114 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~  114 (350)
                      +...|++++|+..|++..+..  |+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~--~~~  137 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS--NDE  137 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCH
Confidence            999999999999999999853  554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.97  E-value=1.2e-08  Score=81.82  Aligned_cols=195  Identities=7%  Similarity=-0.010  Sum_probs=102.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            44555666666666666666666666666542 2245566666666666677777777776666543 335566666667


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782          158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR  237 (350)
Q Consensus       158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  237 (350)
                      ++...|++++|...|++..+.... +...+...+....+.   ..+.. +..........+......+.. + ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence            777777777777777666554211 000111111111111   11111 111222223334443333322 2 2577788


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhh-ccCcHHHHHHHHHHHHh
Q 018782          238 ATEVWESMEKRGFYPSVSTYSVMVHGLCK-KKGKLEEACKYFEMMVD  283 (350)
Q Consensus       238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~  283 (350)
                      |.+.++...+.  .|+......-+..... ..+.+++|.++|.++.+
T Consensus       154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            88777777654  4554444333333222 22567778888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=1.1e-07  Score=76.67  Aligned_cols=202  Identities=10%  Similarity=-0.012  Sum_probs=140.2

Q ss_pred             CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----HH
Q 018782            6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD-----IL   80 (350)
Q Consensus         6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~   80 (350)
                      ..|+..+...+...+...  .+.   ++.......+.....+...+..+...|++++|.+.+.+..+......     ..
T Consensus        42 ~~~~~~~l~~l~~~l~~~--~~~---l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~  116 (293)
T 2qfc_A           42 VYPSMDILQGIAAKLQIP--IIH---FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ  116 (293)
T ss_dssp             SCCCHHHHHHHTTTSCCC--THH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCcC--HHH---HhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHH
Confidence            357776665555444322  121   12221111233455667788888999999999999998887633211     12


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--HhhHHHHHHHHHhcCCHhHHHHHHHHHhh---C-CCCc--cH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAE---PD--AFSYSIFIHAFCEANDIHSVFRVLDSMKR---Y-NLVP--NV  149 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~  149 (350)
                      .+..+...+...|++++|+..+++..+....   +.  ..+++.+...|...|++++|...|++..+   . +..+  ..
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~  196 (293)
T 2qfc_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence            3455677788889999999999998864221   11  34788899999999999999999998862   2 1111  22


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhcccCHHHH-HHHHHHHHh
Q 018782          150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERG----ANP-DEWSYNAILAYHCDRAEVNMA-LRLITRMTK  212 (350)
Q Consensus       150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~  212 (350)
                      .++..+..+|...|++++|...+++..+..    ... -..+|..+..++...|++++| ...++....
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            588889999999999999999999877542    111 156788888999999999999 777777653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.97  E-value=4.4e-08  Score=67.59  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      ..+..+...+...|++++|.+.|+++....+.+..++..+..++...|++++|...++++.+.. +.+..++..+..++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            3444455555555555555555555544444445555555555555555555555555555442 224445555555555


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 018782           91 KAGNIDEAHGMLREMRS  107 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~  107 (350)
                      ..|++++|...++++.+
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            55555555555555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.95  E-value=1.1e-08  Score=77.69  Aligned_cols=157  Identities=13%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER----KC-PVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ...|++++|.++++.+.........++..+...+...|++++|...+++..+.    +. +....++..+...+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45788888888555554433345677888888888888888888888877652    11 12345667777778888888


Q ss_pred             HHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHccCC
Q 018782           96 DEAHGMLREMRSI----GAEP--DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV-PNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus        96 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~  164 (350)
                      ++|...+++..+.    +..+  ....+..+...+...|++++|...+++....    +.+ ....++..+..++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888887776542    1111  1234666677777778888887777766431    111 112334566667777777


Q ss_pred             HHHHHHHHHHHHH
Q 018782          165 VEEAYQLLDEMIE  177 (350)
Q Consensus       165 ~~~a~~~~~~~~~  177 (350)
                      +++|...+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777766554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.95  E-value=2.7e-09  Score=87.95  Aligned_cols=150  Identities=11%  Similarity=-0.026  Sum_probs=93.6

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--------------ILAHNSLLEAM   89 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~   89 (350)
                      +++++|...|+......+.+...+..+...+.+.|++++|+..|++..+......              ..+|..+..++
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555444333334566777777777778888888888887776643321              46666677777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH-
Q 018782           90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA-  168 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-  168 (350)
                      .+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++.+.|+.++| 
T Consensus       207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776653 2355566666667777777777777777666543 33455666666666666666666 


Q ss_pred             HHHHHHH
Q 018782          169 YQLLDEM  175 (350)
Q Consensus       169 ~~~~~~~  175 (350)
                      ...++.|
T Consensus       285 ~~~~~~~  291 (336)
T 1p5q_A          285 KKLYANM  291 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3344444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.95  E-value=7.2e-08  Score=70.39  Aligned_cols=93  Identities=12%  Similarity=-0.045  Sum_probs=45.2

Q ss_pred             HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782           14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG   93 (350)
Q Consensus        14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (350)
                      ..+...+...|+++.|...|+......|.+..++..+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~   95 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   95 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            3344444445555555555555444444444555555555555555555555555544442 223444444555555555


Q ss_pred             CHHHHHHHHHHHHh
Q 018782           94 NIDEAHGMLREMRS  107 (350)
Q Consensus        94 ~~~~a~~~~~~~~~  107 (350)
                      ++++|...|++..+
T Consensus        96 ~~~~A~~~~~~a~~  109 (166)
T 1a17_A           96 KFRAALRDYETVVK  109 (166)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            55555555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.94  E-value=5.9e-07  Score=72.45  Aligned_cols=168  Identities=9%  Similarity=0.019  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC---Ccc--
Q 018782           79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA-----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNL---VPN--  148 (350)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--  148 (350)
                      ...+...+..+...|++++|.+.+....+.....+.     ..+..+...+...|++++|...+++..+...   .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345556677888899999999998888775322111     1233455666777888888888888764321   111  


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----CCC-
Q 018782          149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIE---RGAN-P--DEWSYNAILAYHCDRAEVNMALRLITRMTKEN----VMP-  217 (350)
Q Consensus       149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-  217 (350)
                      ..+++.+...|...|++++|...+++..+   .... +  ...++..+...|...|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            44777888888888888888888888763   2111 1  11467777788888888888888888765431    111 


Q ss_pred             ChhHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 018782          218 DRHTYNMVLKLLVRVGRFDRA-TEVWESME  246 (350)
Q Consensus       218 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  246 (350)
                      -..+|..+..+|...|++++| ...+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            145677788888888888888 66676654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.93  E-value=1.1e-08  Score=75.86  Aligned_cols=122  Identities=7%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA-MCKAGNI--DE   97 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~   97 (350)
                      ...|++++|...++......|.+...+..+..++...|++++|...|++..+... .+...+..+..+ +...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence            4567777777777777666677777777888888888888888888887776533 256667777777 6677777  77


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      |...++++.+.. +.+...+..+...+...|++++|...|+++.+..
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            777777777653 2345666677777777777777777777776643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.89  E-value=1.4e-07  Score=65.01  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4455556666666666666666666665542 2245555666666666666666666666665542 2344455555555


Q ss_pred             HHhcCCHhHHHHHHHHHhhC
Q 018782          124 FCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~  143 (350)
                      +...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.88  E-value=6.4e-08  Score=67.38  Aligned_cols=120  Identities=13%  Similarity=0.031  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782           42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI  121 (350)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  121 (350)
                      .+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~   87 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence            344566666677777777777777777766653 2356666667777777777777777777766642 23455666666


Q ss_pred             HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782          122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK  164 (350)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  164 (350)
                      ..+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            66666777777777776665543 2344555555555555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.88  E-value=8.5e-08  Score=67.04  Aligned_cols=118  Identities=12%  Similarity=-0.022  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      +.+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence            44556666677777777777777777777666532 256666666677777777777777777766642 2345566666


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK  161 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (350)
                      ..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence            666666677777777766665543 2233444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.88  E-value=7.2e-09  Score=78.49  Aligned_cols=152  Identities=12%  Similarity=-0.037  Sum_probs=82.3

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---------------HH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---------------IL   80 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~   80 (350)
                      .+......|+++.+.+.|+.-....+.....+..+...+...|++++|+..|++..+......               ..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            334444556666666666654333334556677777788888888888888888776532211               15


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC  160 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (350)
                      ++..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence            56666666666666666666666666542 2344555666666666666666666666665543 234445555555555


Q ss_pred             ccCCHHHHH
Q 018782          161 KNEKVEEAY  169 (350)
Q Consensus       161 ~~g~~~~a~  169 (350)
                      ..++.+++.
T Consensus       168 ~~~~~~~~~  176 (198)
T 2fbn_A          168 KLKEARKKD  176 (198)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHHH
Confidence            444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.87  E-value=9.6e-06  Score=70.24  Aligned_cols=291  Identities=10%  Similarity=0.010  Sum_probs=178.6

Q ss_pred             cCHhhHHHHHHHHHccCC-hHHHHHHHHHhhh--c-CCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCH
Q 018782            8 PSIYDLDQLLHALCKRKH-VKVAHQFFDNAKH--E-FTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDI   79 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~   79 (350)
                      |+...|...+....+.++ .+....+|+.+..  | .+.+...|...+..+..    .++++.+.++|++.+......-.
T Consensus        45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~  124 (493)
T 2uy1_A           45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS  124 (493)
T ss_dssp             CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH
T ss_pred             CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH
Confidence            677788777776666553 3556777777654  2 34566777777776542    35677788888888763111111


Q ss_pred             H------------------------------------------------HHHHHHHHHHhc--CC-----HHHHHHHHHH
Q 018782           80 L------------------------------------------------AHNSLLEAMCKA--GN-----IDEAHGMLRE  104 (350)
Q Consensus        80 ~------------------------------------------------~~~~l~~~~~~~--~~-----~~~a~~~~~~  104 (350)
                      .                                                .|...+..-...  +-     .+.+..+|++
T Consensus       125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~  204 (493)
T 2uy1_A          125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY  204 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence            1                                                111111111111  00     2345667777


Q ss_pred             HHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 018782          105 MRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-----  179 (350)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----  179 (350)
                      +.... +-+...|...+..+.+.|+.+.|..++++....  +.+...+..    |....+.++.   ++.+.+.-     
T Consensus       205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~  274 (493)
T 2uy1_A          205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence            77653 445677888888888999999999999999887  444433332    2221111222   22222210     


Q ss_pred             ----CCC---CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc-CCHhHHHHHHHHHHhcCCC
Q 018782          180 ----ANP---DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV-GRFDRATEVWESMEKRGFY  251 (350)
Q Consensus       180 ----~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~  251 (350)
                          ..+   ....|...+....+.++.+.|..+|+.+ .. ...+...|...+..-... ++.+.|..+|+...+.-  
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--  350 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--  350 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence                001   1245667777777788999999999999 32 223444554333333333 47999999999998752  


Q ss_pred             CC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          252 PS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       252 p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      |+ ...+...+.-.. ..|+.+.|..+|+++.     .....|...+..-...|+.+.+..++++...
T Consensus       351 ~~~~~~~~~yid~e~-~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLL-RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33 444455555433 4499999999999972     3577788888777778999999998888763

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=5.8e-08  Score=73.56  Aligned_cols=119  Identities=11%  Similarity=0.001  Sum_probs=53.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCH
Q 018782           56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAE-PDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~  130 (350)
                      ..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.    +.. ....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644433321 2224455555666666666666666666655431    111 1123444445555555555


Q ss_pred             hHHHHHHHHHhhC----CCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782          131 HSVFRVLDSMKRY----NLVP--NVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       131 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ++|...+++..+.    +-.+  ...++..+...+...|++++|...+++.
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5555555544321    1000  1223344444444445555554444444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.3e-07  Score=65.71  Aligned_cols=97  Identities=12%  Similarity=0.018  Sum_probs=63.5

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      ...+..+...+...|++++|...|++.....|.+...|..+..++...|++++|+..+++..+.... +...|..+..++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            3455556666666777777777777666655666666666777777777777777777666665322 566666666666


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 018782           90 CKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~  107 (350)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666777777666666655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.85  E-value=4.3e-08  Score=72.67  Aligned_cols=122  Identities=8%  Similarity=0.088  Sum_probs=90.6

Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCH--h
Q 018782           55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA-FCEANDI--H  131 (350)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~  131 (350)
                      ...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            45678888888888877764 3377888888888888888888888888887753 3356667777777 6778887  8


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      +|...+++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            8888888887764 3456777778888888888888888888888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.84  E-value=1.1e-07  Score=78.27  Aligned_cols=130  Identities=9%  Similarity=-0.058  Sum_probs=111.9

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---------------VKTYSILVRGLGDVGELSEARKLFDEMLERK   74 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   74 (350)
                      ...+..+...+.+.|++++|...|++.....|.+               ..+|..+..++.+.|++++|+..+++.++..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4567778889999999999999999988765655               5899999999999999999999999999885


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH-HHHHHHHh
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV-FRVLDSMK  141 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  141 (350)
                      . .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+.+++ ...|+.|.
T Consensus       227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 488999999999999999999999999999864 34667888899999999999888 44666654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.84  E-value=2.7e-08  Score=71.31  Aligned_cols=107  Identities=10%  Similarity=-0.054  Sum_probs=61.3

Q ss_pred             HHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782           34 DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD  113 (350)
Q Consensus        34 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  113 (350)
                      +.+....|.+...+..+...+...|++++|+..|++...... .+...|..+..++...|++++|+..|++..... +.+
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~   88 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE   88 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence            333333344455555666666666666666666666655532 255566666666666666666666666665542 223


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      ...+..+..++...|++++|...|++..+
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555566666666666666666665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=6.9e-07  Score=70.28  Aligned_cols=187  Identities=10%  Similarity=-0.071  Sum_probs=103.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------
Q 018782           56 DVGELSEARKLFDEMLERKCPVDILAHNSL-------LEAMCKAGNIDEAHGMLREMRSIGAEPDA--------------  114 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------  114 (350)
                      ..++.+.|.+.|.++.+..+. ....|..+       ...+...++..+++..+.....  +.|+.              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            467777777777777776433 56666665       3444444444555544444433  12211              


Q ss_pred             --------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--H
Q 018782          115 --------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD--E  184 (350)
Q Consensus       115 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~  184 (350)
                              .....+...+...|++++|.+.|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                    122334555666677777777776665543  333244455556666777777777776443321 110  2


Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            2455556666667777777777766654322132  234445556666667777777777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.82  E-value=7.4e-08  Score=69.04  Aligned_cols=99  Identities=13%  Similarity=0.014  Sum_probs=89.1

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      +...+..+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..|++...... .+...+..+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            4455677778899999999999999999887888999999999999999999999999999998754 378889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 018782           89 MCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~  108 (350)
                      +...|++++|...|++..+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.82  E-value=3.2e-07  Score=62.45  Aligned_cols=98  Identities=13%  Similarity=-0.036  Sum_probs=58.7

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      +..+..+...+...|++++|...|+......|.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            344555556666666666666666666554555566666666666666666666666666655432 2455556666666


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 018782           90 CKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~  108 (350)
                      ...|++++|.+.+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            6666666666666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.81  E-value=7e-08  Score=68.66  Aligned_cols=92  Identities=12%  Similarity=-0.020  Sum_probs=47.1

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN   94 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   94 (350)
                      .+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..|++.....+ .+...+..+..++...|+
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence            3344445555555555555555444444555555555555555555555555555554432 244444555555555555


Q ss_pred             HHHHHHHHHHHHh
Q 018782           95 IDEAHGMLREMRS  107 (350)
Q Consensus        95 ~~~a~~~~~~~~~  107 (350)
                      +++|...|++..+
T Consensus       102 ~~~A~~~~~~al~  114 (142)
T 2xcb_A          102 LDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.81  E-value=2e-07  Score=73.37  Aligned_cols=198  Identities=9%  Similarity=-0.039  Sum_probs=147.7

Q ss_pred             ccCChHHHHHHHHHhhhcCCCCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHhc------------CCC------
Q 018782           22 KRKHVKVAHQFFDNAKHEFTPTVKTYSIL-------VRGLGDVGELSEARKLFDEMLER------------KCP------   76 (350)
Q Consensus        22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~~------   76 (350)
                      ..++...|.+.|.++....|.....|..+       ...+...++..+++..++.-...            |.-      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            68999999999999999888899999888       56666666666666666655441            110      


Q ss_pred             --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc--HHHH
Q 018782           77 --VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN--VFTY  152 (350)
Q Consensus        77 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~  152 (350)
                        .-......+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~  174 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG  174 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence              013344557788899999999999999998754  444366667778999999999999998665532 121  3467


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782          153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNM  224 (350)
Q Consensus       153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  224 (350)
                      ..+..++...|++++|+..|++.......|.  .........++.+.|+.++|...|+++....  |+...+..
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a  246 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA  246 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            7888999999999999999999885433243  3355667777889999999999999999864  44443333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.81  E-value=1.1e-05  Score=65.43  Aligned_cols=230  Identities=11%  Similarity=0.071  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--C
Q 018782           62 EARKLFDEMLERKCPVDILAHNSLLEAMCKAGN----------IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN--D  129 (350)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~  129 (350)
                      +|+++++.++..++. +..+|+.--..+...+.          +++++.+++.+.... +-+..+|+.-.-.+...+  +
T Consensus        48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence            556666666555332 44444443333222222          455666666665542 234445555544454555  3


Q ss_pred             HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----------
Q 018782          130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK-VEEAYQLLDEMIERGANPDEWSYNAILAYHCDR-----------  197 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  197 (350)
                      +++++.+++.+.+.. +-|..+|+.-.-++...|. ++++++.++.+.+..+. |...|+.....+...           
T Consensus       126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence            566666666665544 3355555555555555555 36666666666665444 555555444433332           


Q ss_pred             ---cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc-----------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782          198 ---AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV-----------GRFDRATEVWESMEKRGFYPSVSTYSVMVHG  263 (350)
Q Consensus       198 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  263 (350)
                         +.++++++.+.......+ -|...|+.+-..+.+.           +.++++.+.++++.+.  .||. .|..+-.+
T Consensus       204 ~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~  279 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTII  279 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHH
Confidence               345666666666665432 3455555443333333           3467888888888765  4553 22221111


Q ss_pred             H----hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782          264 L----CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL  300 (350)
Q Consensus       264 ~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  300 (350)
                      .    ....|..+++...+.++++.+ |....-|..+...+
T Consensus       280 ~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~  319 (331)
T 3dss_A          280 LLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred             HHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence            1    112367788888888888776 44555555554433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.79  E-value=2.1e-05  Score=63.70  Aligned_cols=226  Identities=10%  Similarity=0.035  Sum_probs=120.2

Q ss_pred             hcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782           91 KAGNI-DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND----------IHSVFRVLDSMKRYNLVPNVFTYNCIIRKL  159 (350)
Q Consensus        91 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (350)
                      +.|.+ ++|+++++.++..++ -+...|+.--..+...+.          +++++.+++.+.... +.+..+|+.-.-++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34444 366777777766431 123334433333322222          456677777766554 34566666555555


Q ss_pred             HccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc----
Q 018782          160 CKNE--KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE-VNMALRLITRMTKENVMPDRHTYNMVLKLLVRV----  232 (350)
Q Consensus       160 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  232 (350)
                      .+.|  .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.+..+.+.++ -|...|+.....+...    
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred             hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence            5555  366777777777766544 56666655555555565 4667777777666553 3555565555554444    


Q ss_pred             ----------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHhCCCCCCHHH
Q 018782          233 ----------GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK----------GKLEEACKYFEMMVDEGIPPYSST  292 (350)
Q Consensus       233 ----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~  292 (350)
                                +.++++.+.+........ -|...|+.+-..+....          +.++++++.++++.+.. |-+.-.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~  274 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWC  274 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchH
Confidence                      346667777776665422 13444433322222221          24667777777776654 223222


Q ss_pred             HHHHH---HHHHcCCChhHHHHHHHHhhccCCC
Q 018782          293 VEMLR---NRLVGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       293 ~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      +..++   ......|..+++..++.++.+.+|.
T Consensus       275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence            22221   1222456666677777777665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.79  E-value=1.5e-07  Score=65.39  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCC----HHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVD----ILAHNSLL   86 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~   86 (350)
                      +..+...+.+.|++++|+..|++.....|.+...|..+..+|...|++++|++.+++.++...  .++    ..+|..+.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            444555555555555555555555554455555555555555555555555555555543211  011    12344444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 018782           87 EAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      .++...|++++|++.|++.++
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh
Confidence            455555555555555555444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.79  E-value=1.4e-07  Score=63.66  Aligned_cols=98  Identities=12%  Similarity=-0.021  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP--DAFSYSIFI  121 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  121 (350)
                      ...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            33444444444445555555555554444321 234444444555555555555555555554432 11  234444445


Q ss_pred             HHHHhc-CCHhHHHHHHHHHhhC
Q 018782          122 HAFCEA-NDIHSVFRVLDSMKRY  143 (350)
Q Consensus       122 ~~~~~~-~~~~~a~~~~~~~~~~  143 (350)
                      .++... |++++|.+.++.....
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            555555 5555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.77  E-value=8.7e-08  Score=68.15  Aligned_cols=108  Identities=11%  Similarity=-0.036  Sum_probs=81.2

Q ss_pred             HHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782           34 DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD  113 (350)
Q Consensus        34 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  113 (350)
                      +.+....|.+...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++..+.. +.+
T Consensus         8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~   85 (142)
T 2xcb_A            8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INE   85 (142)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence            333333344566677778888888888888888888887643 377788888888888888888888888888764 345


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ...+..+..++...|++++|...|+...+.
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567777888888888888888888887664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.76  E-value=3.4e-07  Score=64.44  Aligned_cols=97  Identities=16%  Similarity=0.035  Sum_probs=48.3

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ++..+..+...+...|++++|...|+......|.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence            3444444445555555555555555554444444455555555555555555555555555544422 244444555555


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 018782           89 MCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~  106 (350)
                      +...|++++|+..|++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            555555555555555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.75  E-value=3e-07  Score=67.08  Aligned_cols=100  Identities=14%  Similarity=-0.034  Sum_probs=75.9

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      .+...+..+...+...|++++|+..|++.....|.+...|..+..++...|++++|+..|++..+.... +...|..+..
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            345566777777778888888888888877766777778888888888888888888888887776433 6777777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 018782           88 AMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      ++...|++++|+..|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888877764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=1.1e-06  Score=59.78  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3455566666666666666666666666553 2255666666666666666666666666666542 2244555556666


Q ss_pred             HHhcCCHhHHHHHHHHHhhC
Q 018782          124 FCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~  143 (350)
                      +...|++++|...++...+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            66666666666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=1.2e-07  Score=66.01  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCC----HHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVD----ILAHNS   84 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~   84 (350)
                      ..+..+...+...|+++.|...|+......|.+...+..+..++...|++++|...+++..+...  +++    ..++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34555556666666666666666666554455566666666666666666666666666554321  111    445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           85 LLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        85 l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      +..++...|++++|.+.|+...+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            555666666666666666665553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.72  E-value=2e-07  Score=64.18  Aligned_cols=96  Identities=14%  Similarity=0.001  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      .+..+...+.+.|++++|...|+.+....|.+...|..+..++...|++++|+..|++..+..+. +...+..+..++..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            34455566666777777777777766666666777777777777777777777777776665332 56666667777777


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 018782           92 AGNIDEAHGMLREMRSI  108 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~  108 (350)
                      .|++++|+..+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777776653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.72  E-value=3.4e-07  Score=69.16  Aligned_cols=130  Identities=14%  Similarity=0.064  Sum_probs=100.4

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV----------------KTYSILVRGLGDVGELSEARKLFDEMLERK   74 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   74 (350)
                      ..+..+...+...|++++|...|++.....+.++                .++..+..++...|++++|+..+++..+..
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3466677888899999999999999876444444                789999999999999999999999999874


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH-HHHHHHhh
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF-RVLDSMKR  142 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~  142 (350)
                       +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...++..++. ..+..+..
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             3478899999999999999999999999998863 345667777777777777766665 44554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.69  E-value=5.7e-07  Score=60.55  Aligned_cols=100  Identities=10%  Similarity=-0.038  Sum_probs=67.5

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLL   86 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~   86 (350)
                      +...+..+...+...|++++|...|+++....+.+...+..+..++...|++++|...+++..+.. +.  +...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            344556666667777777777777777666556666677777777777777777777777766652 22  466666777


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHhCC
Q 018782           87 EAMCKA-GNIDEAHGMLREMRSIG  109 (350)
Q Consensus        87 ~~~~~~-~~~~~a~~~~~~~~~~~  109 (350)
                      .++... |++++|.+.++...+..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcc
Confidence            777777 77777777777776643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.69  E-value=8.2e-07  Score=61.50  Aligned_cols=97  Identities=15%  Similarity=0.076  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+..+...+...|++++|+..|++..+... .+...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            44556666666677777777777777666532 256666666666777777777777776666643 2345566666666


Q ss_pred             HHhcCCHhHHHHHHHHHhh
Q 018782          124 FCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~  142 (350)
                      +...|++++|...|++..+
T Consensus        82 ~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           82 QIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHH
Confidence            6666666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-06  Score=62.30  Aligned_cols=99  Identities=12%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782           42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY  117 (350)
Q Consensus        42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  117 (350)
                      .+...+..+...+...|++++|...|++..+..  |+    ...+..+..++...|++++|+..+++..+.. +.+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            344555555555555555555555555555432  22    4445555555555555555555555555432 2234455


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782          118 SIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       118 ~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ..+..++...|++++|...|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            55555555556666666555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.67  E-value=7.4e-07  Score=61.89  Aligned_cols=97  Identities=15%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPD----AFSYS  118 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  118 (350)
                      ..+..+...+.+.|++++|++.|++.++..+ .+...|..+..+|...|++++|++.+++.++...  .++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4455666677777777777777777666533 2566666677777777777777777766654321  011    12344


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHhh
Q 018782          119 IFIHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      .+..++...|++++|+..|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555556666666666655544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.64  E-value=9.2e-07  Score=62.15  Aligned_cols=100  Identities=10%  Similarity=-0.002  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      +.++..+..+...+...|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   83 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   83 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence            44566677777777777777777777777666532 356667777777777777777777777776643 2345566666


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhh
Q 018782          121 IHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      ..++...|++++|...|++..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            7777777777777777766654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=4.3e-07  Score=63.07  Aligned_cols=99  Identities=11%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPD----AFSY  117 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~  117 (350)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+...  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3455666666666777777777777666653 23556666666666666777777766666655321  111    4455


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782          118 SIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus       118 ~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      ..+..++...|++++|...|+...+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            55555666666666666666665553

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.63  E-value=2.1e-06  Score=59.60  Aligned_cols=95  Identities=15%  Similarity=0.063  Sum_probs=59.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLL   86 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~   86 (350)
                      +..+...+...|++++|...|+.+....|.+.   ..+..+..++...|++++|...|++..+.... +   ..++..+.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence            34445556667777777777777655444444   46666666677777777777777776665322 2   45566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC
Q 018782           87 EAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .++...|++++|...|+.+.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            6666677777777777666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=3.5e-06  Score=59.87  Aligned_cols=96  Identities=17%  Similarity=0.011  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782           11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE   87 (350)
Q Consensus        11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   87 (350)
                      ..+..+...+...|++++|...|+......+.+   ...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~  107 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence            334444444555555555555555544432222   4444445555555555555555555544432 123444444555


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 018782           88 AMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        88 ~~~~~~~~~~a~~~~~~~~~  107 (350)
                      ++...|++++|...|++..+
T Consensus       108 ~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.61  E-value=9e-08  Score=82.32  Aligned_cols=143  Identities=11%  Similarity=-0.069  Sum_probs=84.5

Q ss_pred             ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHH
Q 018782           25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--------------ILAHNSLLEAMC   90 (350)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~   90 (350)
                      ++++|+..|+......+.....+..+...+.+.|++++|+..|++.++......              ..+|..+..++.
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455554443332334556677777788888888888888887776532211              456666666666


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHH
Q 018782           91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAY  169 (350)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  169 (350)
                      +.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.++.+++.
T Consensus       329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666643 2345566666666666666666666666666543 234445555555565555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.61  E-value=7.8e-07  Score=64.86  Aligned_cols=99  Identities=12%  Similarity=-0.006  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782          184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHG  263 (350)
Q Consensus       184 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  263 (350)
                      ...+..+...+...|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+... .+...+..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            34455555566666666666666666655432 2455566666666666666666666666665421 134444444444


Q ss_pred             HhhccCcHHHHHHHHHHHHhCC
Q 018782          264 LCKKKGKLEEACKYFEMMVDEG  285 (350)
Q Consensus       264 ~~~~~~~~~~a~~~~~~~~~~~  285 (350)
                      +... |++++|...|++..+..
T Consensus        89 ~~~~-g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           89 RFDM-ADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHc-cCHHHHHHHHHHHHHhC
Confidence            4443 66666666666665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.55  E-value=8.1e-06  Score=69.62  Aligned_cols=196  Identities=9%  Similarity=-0.028  Sum_probs=140.9

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCH-----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTV-----------------KTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD   78 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~   78 (350)
                      ...+.+.|++++|.+.|..+.+..+...                 .++..++..|...|++++|.+.+.++.+.-.. ++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4567889999999999999865322211                 24788999999999999999999987653111 12


Q ss_pred             H----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--C---
Q 018782           79 I----LAHNSLLEAMCKAGNIDEAHGMLREMRS----IGAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRY--N---  144 (350)
Q Consensus        79 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~---  144 (350)
                      .    .+.+.+...+...|+.+.|.+++.....    .+..+. ..++..+...+...|++++|..+++++...  +   
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    2233344445567899999999988764    222232 456788999999999999999999987542  1   


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GA-NPD---EWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      -+....++..++..|...|++++|...+++....  .. .|.   ...+..+...+...++++.|...+.....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1123567888899999999999999999987643  11 221   23456666777889999999988877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.6e-05  Score=67.82  Aligned_cols=199  Identities=9%  Similarity=-0.008  Sum_probs=110.8

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC
Q 018782           50 LVRGLGDVGELSEARKLFDEMLERKCPVD----------------ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EP  112 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~  112 (350)
                      -...+...|++++|++.|.++.+......                ..++..+...|...|++++|.+.+..+.+.-. .+
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            34556677788888888877776533211                12356667777777777777777776654210 11


Q ss_pred             CHh----hHHHHHHHHHhcCCHhHHHHHHHHHhh----CCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--
Q 018782          113 DAF----SYSIFIHAFCEANDIHSVFRVLDSMKR----YNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN--  181 (350)
Q Consensus       113 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--  181 (350)
                      +..    +.+.+...+...|+.+.+..+++....    .+.. .-..++..+...+...|++++|..++.++...-..  
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            111    222233333445667777777666532    1111 12345566667777777777777777666542111  


Q ss_pred             --C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CC-CC-C--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          182 --P-DEWSYNAILAYHCDRAEVNMALRLITRMTKE--NV-MP-D--RHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       182 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                        + ...++..++..|...|++++|..+++.....  .. .| .  ...+..+...+...|++++|...|.+..+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence              1 1345666666677777777777776665432  11 11 1  133444555556666777777766666553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.53  E-value=8.6e-07  Score=60.96  Aligned_cols=97  Identities=8%  Similarity=-0.088  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782          222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL  300 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  300 (350)
                      +..+...+.+.|++++|...|++..+.  .| +...+..+-.++... |++++|+..|++..+.. |.+...+..+..++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLD-PKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            445556667777777777777777664  23 444444444444444 77777777777777665 55666777777777


Q ss_pred             HcCCChhHHHHHHHHhhccCCC
Q 018782          301 VGLGFLDIIEILADKMERSTSC  322 (350)
Q Consensus       301 ~~~g~~~~a~~~~~~~~~~~~~  322 (350)
                      ...|++++|...+++..+.++.
T Consensus        96 ~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHHhCcC
Confidence            7777777777777777665443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.51  E-value=6.7e-07  Score=77.25  Aligned_cols=124  Identities=10%  Similarity=-0.030  Sum_probs=99.7

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      +..+...+.+.|++++|.+.|+++....|.+..+|..+..++.+.|++++|++.+++..+... .+..+|..+..++...
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            333445567889999999999999887788899999999999999999999999999998843 3788999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHhHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHA--FCEANDIHSVFRVLD  138 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  138 (350)
                      |++++|++.|++..+.. +.+...+..+..+  +.+.|++++|...++
T Consensus        88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999998863 2234455555555  788899999999988

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.51  E-value=2.5e-06  Score=61.96  Aligned_cols=98  Identities=22%  Similarity=0.186  Sum_probs=64.2

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhc------------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHE------------------FTPTVKTYSILVRGLGDVGELSEARKLFDEML   71 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   71 (350)
                      ...+......+.+.|++++|+..|+.....                  .+.+...|..+..++.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            344566677778888888888888876543                  22334566666666666677777777666666


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           72 ERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      +.. +.+...|..+..++...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            653 235666666666666666666666666666654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.50  E-value=2.7e-06  Score=73.11  Aligned_cols=130  Identities=11%  Similarity=-0.005  Sum_probs=106.3

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---------------VKTYSILVRGLGDVGELSEARKLFDEMLERK   74 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   74 (350)
                      ...+..+...+.+.|++++|...|+++....+.+               ..+|..+..++.+.|++++|+..+++.++..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            3456777888999999999999999987754555               6889999999999999999999999999875


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH-HHHHHh
Q 018782           75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR-VLDSMK  141 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~  141 (350)
                      . .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+ .++.|.
T Consensus       348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 478999999999999999999999999999864 3355678888888888888877653 445443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.48  E-value=2.7e-06  Score=59.00  Aligned_cols=96  Identities=14%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 018782          224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSV----STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY---SSTVEML  296 (350)
Q Consensus       224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  296 (350)
                      .+...+...|++++|...|+.+.+..  |+.    ..+..+..++... |++++|...|+++.+.. |.+   +..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l   82 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence            34455555666666666666655431  221    2333333444433 66666666666665543 333   4555566


Q ss_pred             HHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          297 RNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       297 ~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      ..++...|++++|...++++.+..+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            666666666666666666665554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.46  E-value=2.1e-06  Score=62.01  Aligned_cols=94  Identities=14%  Similarity=0.004  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCC--CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HH
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFT--PT----VKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----IL   80 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~   80 (350)
                      ++..+...+...|++++|...+++.....+  ++    ..++..+...+...|++++|.+.+++..+.... ++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344455555556666666666655432100  00    124445555555555555555555554332000 00    22


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREM  105 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~  105 (350)
                      ++..+..++...|++++|...+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3344444444445555444444444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.46  E-value=3.1e-06  Score=70.48  Aligned_cols=90  Identities=7%  Similarity=-0.037  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      +..+|..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34555556666666666666666666666542 2244555556666666666666666666665543 224445555555


Q ss_pred             HHHccCCHHHHH
Q 018782          158 KLCKNEKVEEAY  169 (350)
Q Consensus       158 ~~~~~g~~~~a~  169 (350)
                      ++...++.+++.
T Consensus       350 ~~~~~~~~~~a~  361 (370)
T 1ihg_A          350 VKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.45  E-value=3.7e-06  Score=61.07  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhc--------CC--------CC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKR--------GF--------YP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVD  283 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  283 (350)
                      .+......+.+.|++++|...|.+..+.        ..        .| +...|..+..++... |++++|+..+++.+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Confidence            3444555555556666666655555442        00        11 123455555555544 788888888887777


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782          284 EGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL  327 (350)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  327 (350)
                      .+ |.+...|..+..++...|++++|...+++....+|.....+
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  134 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV  134 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHH
Confidence            65 66777777788888888888888888888777766665343

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.44  E-value=7.1e-07  Score=60.97  Aligned_cols=85  Identities=11%  Similarity=0.067  Sum_probs=58.1

Q ss_pred             cCChHHHHHHHHHhhhc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018782           23 RKHVKVAHQFFDNAKHE---FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   99 (350)
                      .|++++|+..|++....   .|.+...+..+..++...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            56777777777776653   3555667777777777777777777777777776433 5677777777777777777777


Q ss_pred             HHHHHHHhC
Q 018782          100 GMLREMRSI  108 (350)
Q Consensus       100 ~~~~~~~~~  108 (350)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.43  E-value=2.8e-07  Score=79.60  Aligned_cols=125  Identities=9%  Similarity=-0.008  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782           46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC  125 (350)
Q Consensus        46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (350)
                      .+..+...+.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            344455667788999999999999998743 378999999999999999999999999999874 346778899999999


Q ss_pred             hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH--HHccCCHHHHHHHHH
Q 018782          126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK--LCKNEKVEEAYQLLD  173 (350)
Q Consensus       126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  173 (350)
                      ..|++++|...|++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999997754 2344555555555  888899999999988

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=2e-06  Score=62.15  Aligned_cols=134  Identities=11%  Similarity=0.018  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-C
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIG----AEP-D  113 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~  113 (350)
                      ..++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+..    ..+ .
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345667777777788888888888776643111 11    1356667777777777777777777765421    000 1


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      ...+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++|...+++..+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            234555566666666766666666655432    100 1123444555555566666666666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.39  E-value=6.7e-05  Score=66.10  Aligned_cols=173  Identities=8%  Similarity=-0.032  Sum_probs=136.7

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE----------LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG   93 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (350)
                      ..-++|++.++.+....|.+..+|+.--.++...|+          ++++++.++.+.+...+ +..+|+.-..++.+.+
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            344678999999888778888888888877777777          89999999999988655 8888988888888888


Q ss_pred             --CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc--------
Q 018782           94 --NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN-DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN--------  162 (350)
Q Consensus        94 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  162 (350)
                        +++++++.++++.+.. +-+..+|+.-.-.....| .++++++.++++.+.. +-+..+|+....++.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              6799999999999874 457778888777778888 8899999999988875 44777777766665552        


Q ss_pred             ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782          163 ------EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV  200 (350)
Q Consensus       163 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  200 (350)
                            +.++++++.+.++....+. +...|.-+-..+.+.++.
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence                  5578899999888887554 677777777766665553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.34  E-value=1e-05  Score=57.57  Aligned_cols=94  Identities=14%  Similarity=-0.070  Sum_probs=52.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCC-------CH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhc-------
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTP-------TV-----KTYSILVRGLGDVGELSEARKLFDEMLER-------   73 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------   73 (350)
                      +......+...|++++|+..|++...-.|.       +.     ..|..+..++.+.|++++|+..+++.++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            445556666777777777777776552222       22     25556666666666666666666655543       


Q ss_pred             CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           74 KCPVDILAH----NSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        74 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      ... +...|    .....++...|++++|+..|++..+
T Consensus        94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            221 33444    5555555555555555555555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.33  E-value=1.2e-05  Score=66.93  Aligned_cols=98  Identities=8%  Similarity=-0.103  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIG---------------AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      ..+..+...+.+.|++++|+..|++.++.-               .+.+..+|..+..++.+.|++++|+..+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            346667777888888888888888776520               01122334444444444444444444444444432


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                       +.+...+..+..+|...|++++|...|++..+.
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             223344444444444444444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.31  E-value=1.1e-06  Score=59.97  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=36.9

Q ss_pred             cCHHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHH
Q 018782          198 AEVNMALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEAC  275 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~  275 (350)
                      |++++|+..|++..+.+  -+.+...+..+..++...|++++|...|++..+.... +...+..+..++... |++++|.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~-g~~~~A~   81 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNL-GRYEQGV   81 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHc-CCHHHHH
Confidence            44555555555555432  1112334444555555555555555555555543211 233333333333333 5555555


Q ss_pred             HHHHHHHhC
Q 018782          276 KYFEMMVDE  284 (350)
Q Consensus       276 ~~~~~~~~~  284 (350)
                      ..+++....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.30  E-value=0.00012  Score=64.50  Aligned_cols=173  Identities=14%  Similarity=0.068  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--
Q 018782          131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA--  198 (350)
Q Consensus       131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--  198 (350)
                      ++|++.++++.... +-+..+|+.--.++...|+          ++++++.++.+.+..++ +..+|..-.-++.+.+  
T Consensus        46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence            45566666665543 2344455544444444444          67777777777766544 6666666666666666  


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC-CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc----------
Q 018782          199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG-RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK----------  267 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------  267 (350)
                      +++++++.++.+.+... -+...|+.-..++.+.| .++++.+.++++.+..+. |...|+.....+...          
T Consensus       124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence            55777777777777653 35566666666666666 677777777777765333 555555444433321          


Q ss_pred             ---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 018782          268 ---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDI  308 (350)
Q Consensus       268 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  308 (350)
                         .+.++++++.+++++... |-+...|..+...+.+.++.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence               256899999999998876 7788999998888888877544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.30  E-value=3.8e-06  Score=69.11  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH-H
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK-L  159 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  159 (350)
                      +|..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+... .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            67778888888888888888888887753 3456677888888888888888888888887653 2244455555444 2


Q ss_pred             HccCCHHHHHHHHHHHHHc
Q 018782          160 CKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~  178 (350)
                      ...+..+.+...|..+...
T Consensus       310 ~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHhhCC
Confidence            3345667777788777665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.27  E-value=4.7e-06  Score=68.58  Aligned_cols=154  Identities=13%  Similarity=0.024  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 018782          149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL  228 (350)
Q Consensus       149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  228 (350)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...++..++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            4556677777888888888888888877652  33221       223333443332221          1367788888


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChh
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL-VGLGFLD  307 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  307 (350)
                      +.+.|++++|...+++..+... .+...+..+..++... |++++|...|+++.+.. +.+...+..+.... ...+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999988887532 2566777777777665 89999999999887765 44555666665552 3456677


Q ss_pred             HHHHHHHHhhccCCCcH
Q 018782          308 IIEILADKMERSTSCTI  324 (350)
Q Consensus       308 ~a~~~~~~~~~~~~~~~  324 (350)
                      .+..++.++....+..+
T Consensus       317 ~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHhhCCCCCCC
Confidence            78888888876655443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.24  E-value=7.3e-05  Score=52.50  Aligned_cols=110  Identities=10%  Similarity=-0.036  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 018782           25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK----AGNIDEAHG  100 (350)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~  100 (350)
                      ++++|.++|++......+...    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|++
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            556667777666543233332    5566666666666777777766653   55666666666666    566777777


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCC
Q 018782          101 MLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~  144 (350)
                      .|++..+.|   +...+..|...|..    .++.++|..+|++..+.|
T Consensus        83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            777766654   34455556666665    566666666666666655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.19  E-value=1e-05  Score=54.28  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      ...+..+...+...|++++|...|++.....|.+...+..+..++...|++++|++.+++..+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3344444455555555555555555554444444555555555555555555555555555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.19  E-value=1.1e-05  Score=69.46  Aligned_cols=86  Identities=15%  Similarity=0.063  Sum_probs=40.8

Q ss_pred             HccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----K--CPVDILAHNSL   85 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l   85 (350)
                      ..+|++++|..++++...        ..+....+++.|..+|...|++++|+.++++.++.     |  .+....+++.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            345566666555555421        01122344555555555555555555555554321     1  11123344555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      ...|...|++++|+.++++..
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.17  E-value=1.4e-05  Score=54.10  Aligned_cols=79  Identities=10%  Similarity=-0.017  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782           28 VAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        28 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      .|+..|+......|.+...+..+..++...|++++|+..|++..+... .+...|..+..++...|++++|...|++..+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            466677777666677778888888888888888888888888777643 3667777788888888888888888887765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.17  E-value=2.9e-05  Score=49.80  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      .+..+...+...|++++|...|++.....|.+...+..+..++...|++++|...+++..+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            33444444444455555555554444433444444444444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.16  E-value=8.1e-06  Score=57.96  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=74.2

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL----------SEARKLFDEMLERKCPVDILAHNSLLEAMC   90 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   90 (350)
                      .+.+.+++|.+.++......|.++..|..+..++...+++          ++|+..|++.++..+. +..+|..+..+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            3456788899999988887788999999888888887765          4888888888887544 6778888888887


Q ss_pred             hcC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           91 KAG-----------NIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        91 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      ..|           ++++|++.|++..+.  .|+...|...+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            764           677777777777773  455555544433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.16  E-value=5.8e-05  Score=53.69  Aligned_cols=94  Identities=21%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----C-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-------C
Q 018782           83 NSLLEAMCKAGNIDEAHGMLREMRSIGAE-P-----D-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY-------N  144 (350)
Q Consensus        83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~  144 (350)
                      ......+.+.|++++|+..|++.++.... |     +     ...|..+..++.+.|++++|+..+++.++.       .
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            33444444555555555555555542111 0     1     114555555555555555555555555443       2


Q ss_pred             CCccHHHH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          145 LVPNVFTY----NCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       145 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                       +-+...|    .....++...|++++|+..|++..+
T Consensus        95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence             1233445    5556666666666666666666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.12  E-value=0.00016  Score=50.69  Aligned_cols=109  Identities=9%  Similarity=-0.024  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHH
Q 018782           59 ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVF  134 (350)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  134 (350)
                      ++++|.+.|++..+.|.+ ...    |...|...+..++|++.|++..+.|   +...+..|...|..    .++.++|.
T Consensus        10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            445555555555555421 222    4444444445555555555555543   33444445555544    45555555


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 018782          135 RVLDSMKRYNLVPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIER  178 (350)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  178 (350)
                      .+|++..+.|   +...+..|...|..    .+++++|...|++..+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555554443   33344444444444    44555555555554444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.12  E-value=4.9e-06  Score=55.84  Aligned_cols=92  Identities=12%  Similarity=0.017  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------Hh
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-------AF  115 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~  115 (350)
                      +...+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|++.+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            456677788888888888888888888877643 367788888888888888888888888888753  33       33


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVL  137 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~  137 (350)
                      .+..+..++...|+.+.+...+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            4445555555555555544433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.12  E-value=3.2e-05  Score=66.61  Aligned_cols=86  Identities=16%  Similarity=0.027  Sum_probs=39.7

Q ss_pred             hccCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HhhHHHH
Q 018782           55 GDVGELSEARKLFDEMLER-----K--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----GA-EPD-AFSYSIF  120 (350)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l  120 (350)
                      ...|++++|+.++++.++.     |  .+....+++.|...|...|++++|+.++++.++.     |. .|+ ..+++.|
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3455555555555554432     1  0112334555555555555555555555554321     10 111 2244455


Q ss_pred             HHHHHhcCCHhHHHHHHHHH
Q 018782          121 IHAFCEANDIHSVFRVLDSM  140 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~  140 (350)
                      ...|...|++++|..++++.
T Consensus       400 a~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            55555555555555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.99  E-value=0.00012  Score=46.70  Aligned_cols=80  Identities=21%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4556666666666677777777776666553 2255666666666666666666666666666542 2234444444444


Q ss_pred             HH
Q 018782          124 FC  125 (350)
Q Consensus       124 ~~  125 (350)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.89  E-value=0.00011  Score=49.51  Aligned_cols=61  Identities=8%  Similarity=0.098  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI  176 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  176 (350)
                      ..+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444444444444444444444443332 2223334444444444444444444444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.87  E-value=7.9e-05  Score=52.89  Aligned_cols=29  Identities=14%  Similarity=0.006  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782          167 EAYQLLDEMIERGANPDEWSYNAILAYHCD  196 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  196 (350)
                      +|+..|++.++..+. +..+|..+..+|..
T Consensus        64 eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           64 EAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            444444444444322 33344444444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.86  E-value=0.00013  Score=47.80  Aligned_cols=65  Identities=17%  Similarity=0.035  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      |.++..+..+..++...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334455555555555555555555555555554322 44455555555555555555555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.80  E-value=0.00014  Score=47.74  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      +-++..+..+...+...|++++|+..|+++....|.+...|..+..++...|++++|.+.|++..+.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3466778889999999999999999999998877888999999999999999999999999998754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.70  E-value=0.0018  Score=52.87  Aligned_cols=149  Identities=7%  Similarity=-0.008  Sum_probs=99.9

Q ss_pred             HhhhcCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHH
Q 018782           35 NAKHEFTPTVKTYSILVRGLGD--V---GELSEARKLFDEMLERKCPVDILAHNSLLEAMCK---AG--NIDEA---HGM  101 (350)
Q Consensus        35 ~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a---~~~  101 (350)
                      ......|.+...|...+++...  .   ....+|..+|++.++..+. ....|..+..++..   .+  .....   ...
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence            3444567778888887765532  2   3457899999999887332 44555544444431   11  11111   112


Q ss_pred             HHHHHh-CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782          102 LREMRS-IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       102 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  180 (350)
                      ++.... ...+.+..++..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....  
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--  339 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--  339 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            222211 1125577788888777777899999999999998875  78888888888999999999999999999987  


Q ss_pred             CCCHHHHH
Q 018782          181 NPDEWSYN  188 (350)
Q Consensus       181 ~~~~~~~~  188 (350)
                      .|...+|.
T Consensus       340 ~P~~~t~~  347 (372)
T 3ly7_A          340 RPGANTLY  347 (372)
T ss_dssp             SCSHHHHH
T ss_pred             CCCcChHH
Confidence            45666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.69  E-value=0.0023  Score=52.21  Aligned_cols=143  Identities=14%  Similarity=0.085  Sum_probs=95.9

Q ss_pred             CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh---cC--C---HhHHHHHHHHH
Q 018782           75 CPVDILAHNSLLEAMCK--AG---NIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCE---AN--D---IHSVFRVLDSM  140 (350)
Q Consensus        75 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~  140 (350)
                      .+.+...|...+++...  .+   ...+|..+|++..+.  .|+ ...+..+..++..   .+  .   .......++..
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            34577777777765443  33   358899999999985  454 3444444433321   11  1   11111222222


Q ss_pred             hh-CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh
Q 018782          141 KR-YNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR  219 (350)
Q Consensus       141 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  219 (350)
                      .. ...+.+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....  .|..
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~  343 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA  343 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence            11 1125678888888777777899999999999999985  67777878888888999999999999998885  4666


Q ss_pred             hHHH
Q 018782          220 HTYN  223 (350)
Q Consensus       220 ~~~~  223 (350)
                      .+|.
T Consensus       344 ~t~~  347 (372)
T 3ly7_A          344 NTLY  347 (372)
T ss_dssp             HHHH
T ss_pred             ChHH
Confidence            6654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.43  E-value=0.00044  Score=58.56  Aligned_cols=60  Identities=5%  Similarity=-0.080  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRS-----IG-AEPD-AFSYSIFIHAFCEANDIHSVFRVLDSM  140 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  140 (350)
                      +++.|..+|...|++++|+.++++.++     .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344444444444444444444444432     11 0111 123444445555555555555544443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.36  E-value=0.00091  Score=56.66  Aligned_cols=89  Identities=9%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             HHhccCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHH
Q 018782           53 GLGDVGELSEARKLFDEMLER---KCPV----DILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----G-AEPD-AFSYS  118 (350)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~  118 (350)
                      .+...|++++|+.++++.++.   -+.|    ...+++.+...|...|++++|+.++++.++.     | ..|+ ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            344566777777777776542   1122    2456677777777777777777777766531     2 1122 23567


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHh
Q 018782          119 IFIHAFCEANDIHSVFRVLDSMK  141 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a~~~~~~~~  141 (350)
                      .|...|...|++++|..++++..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            77777777777777777777653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.34  E-value=0.0023  Score=41.43  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVK-TYSILVRGLGDVGELSEARKLFDEMLERKC   75 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   75 (350)
                      ....+...|++++|...|+.+....|.+.. .+..+..++...|++++|.+.|++..+...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            345566778888888888887776677777 888888888888888888888888877643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.27  E-value=0.011  Score=46.43  Aligned_cols=85  Identities=11%  Similarity=0.050  Sum_probs=54.7

Q ss_pred             HhHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-cCH
Q 018782          130 IHSVFRVLDSMKRYNLVPN---VFTYNCIIRKLCKN-----EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR-AEV  200 (350)
Q Consensus       130 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~  200 (350)
                      ...|...+++..+..  |+   ...|..+...|.+.     |+.++|...|++.++.+..-+..++......+++. ++.
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            355666666666543  44   45666777777663     77777777777777765433456666666666663 777


Q ss_pred             HHHHHHHHHHHhCCCC
Q 018782          201 NMALRLITRMTKENVM  216 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~  216 (350)
                      +.+.+.+++.......
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            7777777777776544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.26  E-value=0.00094  Score=43.37  Aligned_cols=54  Identities=19%  Similarity=0.315  Sum_probs=22.9

Q ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          228 LLVRVGRFDRATEVWESMEKRGFYP-SVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       228 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      .+...|++++|...++++.+.  .| +.. .+..+..++... |++++|...|++..+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence            344444555555555444443  12 222 333333333322 4555555555554444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.21  E-value=0.0031  Score=40.45  Aligned_cols=67  Identities=12%  Similarity=-0.013  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      |.++..+..+..++...++   .++|..++++.++.... +......+...+.+.|++++|+..|+++.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455555555555543332   45666666665555332 5555555556666666666666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.17  E-value=0.0014  Score=55.56  Aligned_cols=85  Identities=9%  Similarity=-0.035  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CC--CCccHHHHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSI---GAEPD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YN--LVPNVFTYNCIIRK  158 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~  158 (350)
                      |++++|+.++++.++.   -+.|+    ..+++.|...|...|++++|..++++...     .|  .+-...+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            6788888888887642   12222    35788999999999999999999988753     22  22235678899999


Q ss_pred             HHccCCHHHHHHHHHHHHH
Q 018782          159 LCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       159 ~~~~g~~~~a~~~~~~~~~  177 (350)
                      |...|++++|+.++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            9999999999999998765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.17  E-value=0.0053  Score=39.36  Aligned_cols=66  Identities=11%  Similarity=-0.010  Sum_probs=34.6

Q ss_pred             cCHhhHHHHHHHHHccCC---hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782            8 PSIYDLDQLLHALCKRKH---VKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      .|+..+..+..++...++   .++|..++++.....|.++.....+...+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344444444444432222   455555555555545555555555555555555555555555555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.16  E-value=0.0058  Score=40.14  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             cCHhhHHHHHHHHHccCChHHHHHHHHHhhhc-------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782            8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-------FTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus         8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      .++..+..+...+...|++..|..+|+.+...       ..+...++..+..++.+.|+++.|...+++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45555666666666777777777777665431       1234455666666666666666666666666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.11  E-value=0.0054  Score=43.03  Aligned_cols=83  Identities=12%  Similarity=0.026  Sum_probs=58.7

Q ss_pred             ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 018782           25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG---ELSEARKLFDEMLERKCPV--DILAHNSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~   99 (350)
                      .+..+.+.|.......+++..+...+..++++.+   ++++++.+++.+.+.. .|  ....+..+.-++.+.|++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3445556666554444577788888888888877   5668888888877764 22  3566666777788888888888


Q ss_pred             HHHHHHHhC
Q 018782          100 GMLREMRSI  108 (350)
Q Consensus       100 ~~~~~~~~~  108 (350)
                      +.++.+++.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888888874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.08  E-value=0.0038  Score=52.88  Aligned_cols=92  Identities=7%  Similarity=-0.073  Sum_probs=72.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CC--CCccHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRSIG---AEPD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YN--LVPNVFT  151 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~  151 (350)
                      +..+...|++++|+.++++.++..   +.|+    ..+++.+...|...|++++|..++++...     .|  .+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444667899999999999998642   2222    35788999999999999999999988753     22  2223567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88999999999999999999998764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.03  Score=40.34  Aligned_cols=99  Identities=12%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 018782           54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV  133 (350)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  133 (350)
                      ....|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+..+         +..+.-.|.-.|+.+..
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34455666666555544      1455566666666666666666666655432         33344444445555555


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782          134 FRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD  173 (350)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  173 (350)
                      .++-+.....|      -++.....+.-.|+++++.++|.
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence            44444443333      12223333444555555555553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.07  E-value=0.0085  Score=55.43  Aligned_cols=28  Identities=11%  Similarity=0.099  Sum_probs=14.3

Q ss_pred             ChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782          218 DRHTYNMVLKLLVRVGRFDRATEVWESM  245 (350)
Q Consensus       218 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~  245 (350)
                      +...|..+...+.+.++++.|.+.|..+
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3344555555555555555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.06  E-value=0.018  Score=53.32  Aligned_cols=185  Identities=11%  Similarity=0.041  Sum_probs=101.0

Q ss_pred             HHHHccCChHHHHH-HHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           18 HALCKRKHVKVAHQ-FFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        18 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      ......+++++|.+ ++..+.     +......++..+.+.|.++.|.++.+.-.            .-.......|+++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~  669 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT  669 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred             hHHHHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence            33456788888877 553322     12233777777888888888887663211            1123455678888


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782           97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI  176 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  176 (350)
                      .|.++.+.+      .+...|..+...+.+.++++.|.+.|.++...         ..+...+...|+.+....+.+...
T Consensus       670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHHHHHHHHHHHH
Confidence            888775432      35677888888888888888888888876431         122233333444444333333333


Q ss_pred             HcCCCCC-------HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCCHhHHH
Q 018782          177 ERGANPD-------EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR----HTYNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       177 ~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~  239 (350)
                      ..|..-.       ..-+...+..|.+.+++++|..+-+.   .  .|..    .........+...|+.+.|.
T Consensus       735 ~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~---~--~~~~~~i~~~~~~~~~~L~~~~~~~~a~  803 (814)
T 3mkq_A          735 TTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST---Y--GLGDNEVNDIVTKWKENLILNGKNTVSE  803 (814)
T ss_dssp             HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH---T--TCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred             HcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH---h--CCChHHHHHHHHHHHHHHHhccchhHHH
Confidence            3221000       00123344455555555555554443   2  2344    34444445556667654443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.06  E-value=0.0096  Score=41.78  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782          271 LEEACKYFEMMVDEGIPP--YSSTVEMLRNRLVGLGFLDIIEILADKMERSTS  321 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  321 (350)
                      .++++.+|+...+.+ .|  +...+..+.-++.+.|++++|.+.++.+.+..|
T Consensus        51 ~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           51 IRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            334444444444432 12  233334444444444444444444444444444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.87  E-value=0.015  Score=38.17  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=30.1

Q ss_pred             CcHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          269 GKLEEACKYFEMMVDEG------IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      |++..|...|+.+.+..      -.+...++..+..++.+.|+++.|...++++.+..|.....
T Consensus        19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A           19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            55555555555444320      12344555556666666666666666666665555554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.12  Score=37.28  Aligned_cols=130  Identities=11%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      +......|+++.|.++.+.+     .+...|..|.......|+++-|++.|.+..+         +..+.-.|...|+.+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            34556789999999998876     3678999999999999999999999998764         234556677788988


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782           97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      ...++-+.....|-      ++....++.-.|+++++.++|.+..+   .|...      ......|..+.|.++.+.+
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            87777777666542      55566677788999999999865533   22211      1122356667777777665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.57  E-value=0.099  Score=36.33  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHh-hHHHHHH------HHHhcCCHhHHHHHHHHHhhCC
Q 018782           78 DILAHNSLLEAMCKAGNI------DEAHGMLREMRSIGAEPDAF-SYSIFIH------AFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      |..+|-..+...-+.|++      ++..++|++.... ++|+.. .|...+.      .+...+|.++|.++|+.+.+.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            445555555555555555      5666667666654 444421 1111111      1123467777777777775542


Q ss_pred             CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 018782          145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN  181 (350)
Q Consensus       145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  181 (350)
                       +.-...|......-.+.|+...|..++......+.+
T Consensus        91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence             222555555556666677777777777777776655

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.56  E-value=0.035  Score=38.52  Aligned_cols=53  Identities=9%  Similarity=0.040  Sum_probs=29.8

Q ss_pred             cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782          198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY  251 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  251 (350)
                      +++++|.++|+.++..+-.. ...|....+--.+.|++..|.+++......+.+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            56666666666665432222 445555555555666666666666666655444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.44  E-value=0.028  Score=37.93  Aligned_cols=85  Identities=12%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSE---ARKLFDEMLERKCP-VDILAHNSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~   99 (350)
                      ..+..+.+-|.......+++..+-..+..++.+..+...   ++.+++.+.+.+.+ -.......|.-++.+.|++++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            344445555555444344666666667777777665555   66777776665311 13444555666677777777777


Q ss_pred             HHHHHHHhC
Q 018782          100 GMLREMRSI  108 (350)
Q Consensus       100 ~~~~~~~~~  108 (350)
                      +.++.+++.
T Consensus        95 ~~~~~lL~~  103 (126)
T 1nzn_A           95 KYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777763

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.36  E-value=0.049  Score=42.77  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 018782           26 VKVAHQFFDNAKHEFTP--TVKTYSILVRGLGDV-----GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA-GNIDE   97 (350)
Q Consensus        26 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~   97 (350)
                      ...|...+++...-.|.  +...|..+...|...     |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34455555555443333  456777777777773     78888888888877764433466777777777764 77888


Q ss_pred             HHHHHHHHHhCCCC
Q 018782           98 AHGMLREMRSIGAE  111 (350)
Q Consensus        98 a~~~~~~~~~~~~~  111 (350)
                      +.+.+++.+.....
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            88888888776544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.22  E-value=0.076  Score=35.82  Aligned_cols=90  Identities=13%  Similarity=0.013  Sum_probs=48.2

Q ss_pred             CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHH---HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChh
Q 018782          233 GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLE---EACKYFEMMVDEGIPP--YSSTVEMLRNRLVGLGFLD  307 (350)
Q Consensus       233 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  307 (350)
                      ..+..+.+-|.+....|. |+..+-..+..++.+. .+..   +++.++..+...+ .|  .......+.-++.+.|+++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence            344445555555444333 3444433344444433 3333   3666666665554 22  3344555666777777777


Q ss_pred             HHHHHHHHhhccCCCcHH
Q 018782          308 IIEILADKMERSTSCTIQ  325 (350)
Q Consensus       308 ~a~~~~~~~~~~~~~~~~  325 (350)
                      +|.+.++.+.+..|.+.+
T Consensus        92 ~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            777777777766665544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.21  E-value=0.16  Score=34.62  Aligned_cols=140  Identities=10%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782          160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  239 (350)
                      .-.|..++..++..+.....   +..-|+.++.-....-+-+-..+.++.+-+.   .|..          .+|++....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence            34566777777777666542   4555666665555555555555555554332   2211          123333333


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      ..+-.+-     .+...+...+..+..+ |+-++-.+++..+... .+|++..+..+..+|.+.|+..+|.+++.+.-+.
T Consensus        82 ~C~~~~n-----~~se~vd~ALd~lv~~-~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           82 ECGVINN-----TLNEHVNKALDILVIQ-GKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHT-TCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHh-ccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            2222221     2444556666666656 8999999999986554 3789999999999999999999999999999887


Q ss_pred             CCC
Q 018782          320 TSC  322 (350)
Q Consensus       320 ~~~  322 (350)
                      +..
T Consensus       155 G~k  157 (172)
T 1wy6_A          155 GEK  157 (172)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.37  E-value=0.39  Score=32.77  Aligned_cols=63  Identities=14%  Similarity=0.049  Sum_probs=29.0

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV  215 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  215 (350)
                      +...+..+...|+.+...+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            33344444445555555555444332 1233444444445555555555555555555544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.10  E-value=0.14  Score=42.78  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS-----IGAEPDAFSYSI  119 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  119 (350)
                      .+...++..+...|+++++...+..+... .+.+...|..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+-..
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l  250 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            34566778888899999999999888876 355888999999999999999999999988754     588888876543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.31  Score=44.17  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             HHHHHHHHccCC-hHHHHHHHHHhhhcCCCCHHHHHH-HHHHHhccC-CHHHHHHHHHHHHhc------CCCC-CH----
Q 018782           14 DQLLHALCKRKH-VKVAHQFFDNAKHEFTPTVKTYSI-LVRGLGDVG-ELSEARKLFDEMLER------KCPV-DI----   79 (350)
Q Consensus        14 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~----   79 (350)
                      ..++..+...++ .+.|..+|+++....|.....+.. ++..+...+ +--+|.+++.+..+.      ..++ +.    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            455666666776 588999999988765544443333 333333332 223455555554321      1111 21    


Q ss_pred             ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 018782           80 ------LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK  141 (350)
Q Consensus        80 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  141 (350)
                            ...+.-...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                  12223345577899999999999999886 23456699999999999999999999998874

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.06  E-value=3.7e-06  Score=69.99  Aligned_cols=237  Identities=14%  Similarity=0.110  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA  123 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  123 (350)
                      +.+|..|..+....+++.+|++-|-+  ..    |+..|..++....+.|.+++-+.++...++..  .++..=+.|+-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIK--AD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCC--CS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHh--CC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence            34555666666666665555544421  11    44445556666666666666666665555442  223333455666


Q ss_pred             HHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHH--------------------------HHHHccCCHHHHHHHHHHHHH
Q 018782          124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCII--------------------------RKLCKNEKVEEAYQLLDEMIE  177 (350)
Q Consensus       124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------~~~~~~g~~~~a~~~~~~~~~  177 (350)
                      |++.++..+..+++.       .|+..-...+.                          .++.+.|++..|.+.-++   
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK---  195 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK---  195 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            666555443322211       12222223333                          344444555444432221   


Q ss_pred             cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782          178 RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY  257 (350)
Q Consensus       178 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  257 (350)
                         ..++.||..+-.+|...+.+..|.-.--.++-.   ++  -...++..|...|.+++-..+++..... -.....+|
T Consensus       196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmF  266 (624)
T 3lvg_A          196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMF  266 (624)
T ss_dssp             ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHH
T ss_pred             ---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHH
Confidence               226678888888888888887776555554432   21  2334667788888888888888887743 23567778


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHcCCChhHH
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDE-GIPP------YSSTVEMLRNRLVGLGFLDII  309 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a  309 (350)
                      +-|.-.|++-  ++++..+.++..-.. ++|-      ....|..++-.|.+-.+++.|
T Consensus       267 TELaILYsKY--~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA  323 (624)
T 3lvg_A          267 TELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  323 (624)
T ss_dssp             HHHHHHHHSS--CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence            8777666643  566666655543221 2221      223455555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.02  E-value=0.35  Score=30.88  Aligned_cols=65  Identities=9%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          255 STYSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      ..|..--..|..... +.-++.+-++.+...++-|++.+....+++|.+.+++..|+++++-++.+
T Consensus         9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E            9 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344444444554444 66677777888888888888888888888888888888888888887654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.85  E-value=2.5  Score=39.37  Aligned_cols=258  Identities=10%  Similarity=-0.001  Sum_probs=110.3

Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHhhHHHHHHH
Q 018782           53 GLGDVGELSEARKLFDEMLERKCPVDI--LAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--E-----PDAFSYSIFIHA  123 (350)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~  123 (350)
                      +....|+.++++.+++.....+-..+.  ..-..+.-+.+..|..+++..++.......-  .     +....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            345566666666666654432101122  2222333444455555566666665543210  0     111112222222


Q ss_pred             HHhcCC-HhHHHHHHHHHhhCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccc
Q 018782          124 FCEAND-IHSVFRVLDSMKRYNLVPNV--FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA--YHCDRA  198 (350)
Q Consensus       124 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~  198 (350)
                      .+-.|. -+++...+..+.... .+..  ..-.++...++-.|+.+....++..+.+..   +......+..  ++...|
T Consensus       463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence            222232 234444444443321 1111  111123334445666666666666555431   2222222222  233566


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHH
Q 018782          199 EVNMALRLITRMTKENVMPDRHTY--NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACK  276 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~  276 (350)
                      +.+.+..+++.+.... .|....-  ..+.-+|+..|+.....+++..+.+. ...+......+--++... |+.+.+.+
T Consensus       539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~-g~~e~v~r  615 (963)
T 4ady_A          539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLL-RDYTTVPR  615 (963)
T ss_dssp             CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTS-SSCSSHHH
T ss_pred             ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhcc-CCHHHHHH
Confidence            6666666666665531 1211111  12334555667766666677776653 111222222222222222 45555566


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHhhc
Q 018782          277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFL-DIIEILADKMER  318 (350)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~  318 (350)
                      +++.+.+.+ .|....-..+..+....|.. .++..++..+..
T Consensus       616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            665555443 33333333333333334433 455666666643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.25  Score=44.77  Aligned_cols=128  Identities=10%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             HHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHHcC-CHhHHHHHHHHHHhc------CCCC-CHH
Q 018782          187 YNAILAYHCDRAE-VNMALRLITRMTKENVMPDRHTY--NMVLKLLVRVG-RFDRATEVWESMEKR------GFYP-SVS  255 (350)
Q Consensus       187 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p-~~~  255 (350)
                      ...++..+...++ .+.|..+++.+....  |...++  ..++..+...+ +--+|.+++.+..+.      ...+ +..
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            3445555555555 577888888887754  333322  22233222222 223455555444321      1111 111


Q ss_pred             HH------HHHHH---HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782          256 TY------SVMVH---GLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME  317 (350)
Q Consensus       256 ~~------~~ll~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  317 (350)
                      ..      ..++.   -|+...|+++.|+++-++....- |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            00      11221   12334499999999999998875 7789999999999999999999999999885

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.68  E-value=1.7  Score=41.94  Aligned_cols=51  Identities=14%  Similarity=0.014  Sum_probs=27.5

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEM   70 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   70 (350)
                      ++..+...+..+.+.++....    +.++..--.+.+++...|++++|.+.|.+.
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            334444455555554443332    234444455666667777777777777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.48  E-value=2  Score=36.52  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHh----CCCCCC--hh
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIER--GANPD---EWSYNAILAYHCDRAEVNMALRLITRMTK----ENVMPD--RH  220 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~  220 (350)
                      ...|...+...|++.+|..++..+...  +....   ...+..-++.|...+++..|..++..+..    ....|+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            345667777778888888887776532  11111   23455566777778888888877777532    111122  13


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      .+...+..+...+++.+|.+.|.++.+
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            455666677777888887777776653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.22  E-value=3.6  Score=38.41  Aligned_cols=267  Identities=12%  Similarity=0.084  Sum_probs=144.4

Q ss_pred             HHccCChHHHHHHHHHhhhcC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 018782           20 LCKRKHVKVAHQFFDNAKHEF-TPTV--KTYSILVRGLGDVGELSEARKLFDEMLERKC-------PVDILAHNSLLEAM   89 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~   89 (350)
                      ....|+.++++.+++....+. ..+.  ..-..+.-+.+..|..+++..++.......-       .+....-..+.-+.
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445677777777777654311 1222  2233334445556665678887777654311       01122223333333


Q ss_pred             HhcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782           90 CKAGN-IDEAHGMLREMRSIGAEPDAFSYS--IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE  166 (350)
Q Consensus        90 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  166 (350)
                      +-.|. -+++.+.+..+.... .+......  .+...+.-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred             HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence            33343 246666776666532 11111122  23344556677777778877766532 112222233334455789999


Q ss_pred             HHHHHHHHHHHcCCCCCHHH-HH---HHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782          167 EAYQLLDEMIERGANPDEWS-YN---AILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVW  242 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~~-~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  242 (350)
                      .+..+++.+...   .+... |.   ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+++
T Consensus       542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            999888888764   13222 22   34456788999888888999888742 223332233333444567777788888


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782          243 ESMEKRGFYPSVSTYSVMVHGLCKKKGK-LEEACKYFEMMVDEGIPPYSSTVEMLR  297 (350)
Q Consensus       243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  297 (350)
                      ..+.+.+ .|....-..+.-+.... |+ ..+++.++..+...   ++..+-...+
T Consensus       618 ~~L~~~~-d~~VR~gAalALGli~a-Gn~~~~aid~L~~L~~D---~d~~Vrq~Ai  668 (963)
T 4ady_A          618 QLLSKSH-NAHVRCGTAFALGIACA-GKGLQSAIDVLDPLTKD---PVDFVRQAAM  668 (963)
T ss_dssp             TTGGGCS-CHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHTC---SSHHHHHHHH
T ss_pred             HHHHhcC-CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHccC---CCHHHHHHHH
Confidence            7666542 45554444444444333 33 36788888888643   3444443333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.12  E-value=0.31  Score=40.58  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh-----hCCCCccHHHHHHH
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK-----RYNLVPNVFTYNCI  155 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l  155 (350)
                      +...++..+...|++.+++..+..+... .+.+...+..+|.++.+.|+..+|++.|+.+.     +.|+.|+..+-...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4456778888999999999999999876 35688899999999999999999999999874     35999988775443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.11  E-value=2.6  Score=40.71  Aligned_cols=193  Identities=11%  Similarity=0.038  Sum_probs=117.6

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C---------------
Q 018782          119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER----G---------------  179 (350)
Q Consensus       119 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---------------  179 (350)
                      .++..+...+..+.+..+.....     .+...--.+..++...|++++|.+.|.+.-..    +               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            34455556666666655444332     23333345678888999999999999764211    0               


Q ss_pred             ---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          180 ---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       180 ---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                         ...-..-|..++..+-+.+.++.+.++-+...+.....+    ...|..+.+.+...|++++|...+-.+.+...  
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence               001123467788888888999999888877765432212    12578889999999999999999988876533  


Q ss_pred             CHHHHHHHHHHHhhc-----------cCcHHHHHHHHHHHH-hC-CCCCCHHHHHHHHHHHHcCCChhHHHH-HHHHhhc
Q 018782          253 SVSTYSVMVHGLCKK-----------KGKLEEACKYFEMMV-DE-GIPPYSSTVEMLRNRLVGLGFLDIIEI-LADKMER  318 (350)
Q Consensus       253 ~~~~~~~ll~~~~~~-----------~~~~~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~  318 (350)
                      -......++..+|..           .|..++..+++..-. .. .....+.-|..|-.-+...|++..|-. +++.+.+
T Consensus       970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            355677777776654           134444444443321 11 112223345555555566677765544 4665543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.93  E-value=0.73  Score=29.44  Aligned_cols=63  Identities=13%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      +.-+..+-+..+....+.|++......+++|.+.+++..|.++++.++.. ..+....|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34455566666666667777777777777777777777777777777643 1222334555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.71  E-value=0.61  Score=31.67  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .|++.+--.+..++++..+   ..+++.+++.+.+.+..-....+..|.-++.+.|+++.|.+..+.+++.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4555555555555555543   3346666666665542223455555666666777777777776666663

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.28  E-value=1  Score=30.50  Aligned_cols=64  Identities=9%  Similarity=0.021  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          256 TYSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       256 ~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      .|..--..|..... +.-+..+-++.+...++-|++.++...+++|.+.+++..|+++++-++.+
T Consensus        53 eFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           53 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34433334444434 55566777777777788888888888888888888888888888887654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.21  E-value=0.0021  Score=54.06  Aligned_cols=216  Identities=9%  Similarity=0.074  Sum_probs=123.1

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      |+..|..++.+..+.|.+++-..++...++. ...+.+=+.|+.+|++.++..+.++++.       .|+..-...+..-
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr  153 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR  153 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence            4556667777777777777777777666553 2233444567777777776555443331       1344334455555


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc
Q 018782           89 MCKAGNIDEAHGMLREMRSIG--------------------AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN  148 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  148 (350)
                      |...|.++.|.-+|..+....                    -..++.||-.+-.+|...+++..|.-.--.+.-+   ++
T Consensus       154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad  230 (624)
T 3lvg_A          154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD  230 (624)
T ss_dssp             HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS
T ss_pred             HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH
Confidence            666666666655554442110                    0235667888888888888777665444333321   11


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCC------CChhH
Q 018782          149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVM------PDRHT  221 (350)
Q Consensus       149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~  221 (350)
                        -...++..|-..|.+++.+.+++.-.... ......|+.|.-.|++- ++++..+-++..... +++      -....
T Consensus       231 --eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL  306 (624)
T 3lvg_A          231 --ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL  306 (624)
T ss_dssp             --CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred             --HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence              12245566778888888888888877543 34777888888877765 444444433332211 111      01234


Q ss_pred             HHHHHHHHHHcCCHhHHH
Q 018782          222 YNMVLKLLVRVGRFDRAT  239 (350)
Q Consensus       222 ~~~l~~~~~~~~~~~~a~  239 (350)
                      |.-++-.|.+-.+++.|.
T Consensus       307 W~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          307 WAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhcchhHHHHH
Confidence            555666666666665544

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.59  E-value=1.6  Score=29.58  Aligned_cols=62  Identities=13%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      .-+..+-+..+....+.|++......+++|.+.+++..|.++++.++.+ ..+....|..++.
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            3345555666666677788888888888888888888888888777743 2233444555554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.44  E-value=1.7  Score=29.48  Aligned_cols=55  Identities=13%  Similarity=0.021  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      ..+++.+++.+...+..-....+..+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            3445555555554431112334444555555555555555555555555444433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.62  E-value=2.4  Score=30.05  Aligned_cols=126  Identities=10%  Similarity=0.001  Sum_probs=65.0

Q ss_pred             CCCCcCH--hhHHHHHHHHHccCChHHHHHHHHHhhh--cCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782            4 FGIKPSI--YDLDQLLHALCKRKHVKVAHQFFDNAKH--EFTPT-------VKTYSILVRGLGDVGELSEARKLFDEMLE   72 (350)
Q Consensus         4 ~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   72 (350)
                      .|+.|--  ..+-.-+..+...|.++.|+-+.+.+..  +..++       ..++..+..++...+++..|...|++.++
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3444433  3344556777788888888888887643  22222       13566677788888888888888888643


Q ss_pred             c--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782           73 R--KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus        73 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      .  .+.-...+...+.   .......          ......+...-..+..+|.+.+++++|+.+++.+..
T Consensus        92 ~~k~l~k~~s~~~~~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHhcCCCcccccc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            2  1110111110010   0000000          001223344445577788888888888888877643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.65  E-value=4.1  Score=28.93  Aligned_cols=124  Identities=7%  Similarity=-0.061  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHhCC-CCCCh-------hHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCHHHH
Q 018782          187 YNAILAYHCDRAEVNMALRLITRMTKEN-VMPDR-------HTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSVSTY  257 (350)
Q Consensus       187 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~  257 (350)
                      +..-+..+...+.++.|+-+...+.... ..|+.       .++..+.+++...+++..|...|++..+. ..-+...+.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3344566677788888877776654321 12331       24566777888888888888888886532 111111111


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT  323 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  323 (350)
                      ...+..   . .....         ......+.+.-..+..+|.+.|++++|+.+++.+....-.+
T Consensus       103 ~~~~~~---~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~  155 (167)
T 3ffl_A          103 RPSTGN---S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP  155 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred             cccccc---c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence            100100   0 00000         11123455666678899999999999999999987654333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.60  E-value=3.7  Score=28.26  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782           41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  108 (350)
                      .++..+-..+..++++..+   ..+++.+++.+.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4566666666666666554   3456667777666543334555556666777777777777777777774

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.57  E-value=5.9  Score=33.43  Aligned_cols=62  Identities=11%  Similarity=0.059  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782           45 KTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      .++..+...|.+.|+++.|.+.|.++....  ...-...+-.+++.+...+++..+...+.++.
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            355667777777777777777777766532  22235556666777777777777777766664

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.37  E-value=1.5  Score=33.99  Aligned_cols=56  Identities=11%  Similarity=0.059  Sum_probs=37.7

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      ..+.+.|++++|+.....-.+..|.|...-..++..+|-.|++++|.+-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            34556677777777766666666667777777777777777777777766666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.28  E-value=4  Score=28.13  Aligned_cols=55  Identities=11%  Similarity=0.008  Sum_probs=28.1

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782          270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI  324 (350)
Q Consensus       270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  324 (350)
                      +..+++.+++.+...+..-.......+.-++.+.|++++|.++.+.+.+..|.+.
T Consensus        57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            3445555555555433112333444455556666666666666666655555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.04  E-value=9.7  Score=32.31  Aligned_cols=259  Identities=8%  Similarity=0.058  Sum_probs=148.5

Q ss_pred             cCChHHHHHHHHHhhh------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hc
Q 018782           23 RKHVKVAHQFFDNAKH------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC----KA   92 (350)
Q Consensus        23 ~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~   92 (350)
                      .|+++.|++.+-.+.+      ..+.+......++..|...|+++...+.+.-+.+..-. .......+++.+.    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence            4778888887766543      24456777888999999999999998888776644222 2233334443332    23


Q ss_pred             CCHHH--HHHHHHHHHh--CC-CCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CCCcc---HHHHHHHHHHH
Q 018782           93 GNIDE--AHGMLREMRS--IG-AEP---DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY--NLVPN---VFTYNCIIRKL  159 (350)
Q Consensus        93 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~  159 (350)
                      ...+.  -..+.+.+..  .| +-.   .......|...+...|++.+|..++..+...  |....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            33322  1122211111  11 111   1123456788899999999999999998532  22111   34666778899


Q ss_pred             HccCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCChhHHH----HHHHH
Q 018782          160 CKNEKVEEAYQLLDEMIE----RGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDRHTYN----MVLKL  228 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~  228 (350)
                      ...+++..|..++.++..    ....|+  ...+...+..+...+++.+|...|.++... ....+...+.    .++.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~  267 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF  267 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            999999999999998753    112222  234566667777889999988888776543 1112222222    22222


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHH
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMV  282 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~  282 (350)
                      ..-.+....-..+..........++...+..++.+|... -.+++.+.+.|....
T Consensus       268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L  322 (445)
T 4b4t_P          268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL  322 (445)
T ss_dssp             HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred             HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence            222332233333333333322335667788888887542 134566666555433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.83  E-value=4.3  Score=34.28  Aligned_cols=96  Identities=9%  Similarity=-0.080  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCHHHHHHH--
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK-CPVDILAHNSL--   85 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l--   85 (350)
                      +...+...+.+.|+++.|.+.|.++..   +.......+..+++.+...+++..+...+.+....- -.++....+.+  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            456788899999999999999999865   344567888999999999999999999999876431 11222222211  


Q ss_pred             --HHHHHhcCCHHHHHHHHHHHHh
Q 018782           86 --LEAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        86 --~~~~~~~~~~~~a~~~~~~~~~  107 (350)
                        +..+...+++..|-+.|-....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence              1223356778887777766654

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=87.75  E-value=3.6  Score=26.21  Aligned_cols=79  Identities=11%  Similarity=-0.068  Sum_probs=37.5

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR  103 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  103 (350)
                      ...++|..+-+.+..... ...+--.-+..+...|++++|..+.+.+.    .||...|..|.  -.+.|-.+++..-+.
T Consensus        20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~   92 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA   92 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence            345566666555544211 11111122233455566666665544332    45555555443  235555555555555


Q ss_pred             HHHhCC
Q 018782          104 EMRSIG  109 (350)
Q Consensus       104 ~~~~~~  109 (350)
                      ++...|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            555544

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=87.72  E-value=3.9  Score=26.10  Aligned_cols=79  Identities=13%  Similarity=0.014  Sum_probs=36.4

Q ss_pred             CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR  103 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  103 (350)
                      ...++|..+-+.+..... ...+--.-+..+...|++++|..+.+.+.    .||...|..|..  .+.|-.+++..-+.
T Consensus        21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   93 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN   93 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            345555555555544211 11111122233445566666665554432    345555554432  24455555555555


Q ss_pred             HHHhCC
Q 018782          104 EMRSIG  109 (350)
Q Consensus       104 ~~~~~~  109 (350)
                      ++...|
T Consensus        94 ~la~sg   99 (116)
T 2p58_C           94 RLARSQ   99 (116)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.61  E-value=13  Score=30.93  Aligned_cols=239  Identities=10%  Similarity=0.012  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHhhh--c-CC--CCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 018782           12 DLDQLLHALCKRKHVKVAHQFFDNAKH--E-FT--PTVKTYSILVRGLGDV-GELSEARKLFDEMLERKCPVDILAH---   82 (350)
Q Consensus        12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~--~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~---   82 (350)
                      ....|...|.+.|+.++..+++.....  . ++  ........++..+... +..+.-.++..+..+..-. ...+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            445677889999999999999988754  1 11  2345567788888664 4445555555554432100 11222   


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CCCccHHHH
Q 018782           83 ---NSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY--NLVPNVFTY  152 (350)
Q Consensus        83 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~  152 (350)
                         ..++..|...|++.+|.+++..+.+.--..|     ...+..-+..|...+++.++...+......  .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               2578899999999999999999886321212     224555677888999999999999877432  222333222


Q ss_pred             H----HHHHHHH-ccCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcccCHHHHHHHHH-HHHhCCCCCChh
Q 018782          153 N----CIIRKLC-KNEKVEEAYQLLDEMIERGANPDE------WSYNAILAYHCDRAEVNMALRLIT-RMTKENVMPDRH  220 (350)
Q Consensus       153 ~----~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~  220 (350)
                      .    .-...+. ..+++..|...|-+..+.--..+.      ..|..+.. ..... ..+...++. .....-..|...
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~-r~el~~~l~~~~~~~~~~pei~  257 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQ-SDDVNQLVSGKLAITYSGRDID  257 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTC-GGGHHHHHHSHHHHTTCSHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCC-HHHHHHHhccccccccCCccHH
Confidence            1    1123455 789999998887766432111121      12322222 22222 222222221 111111235555


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                      .+..++.+| ..+++.+...++...... +..|..
T Consensus       258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~  290 (394)
T 3txn_A          258 AMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVI  290 (394)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence            566666654 467887777777665432 444544

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=85.61  E-value=8.5  Score=28.33  Aligned_cols=53  Identities=17%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          200 VNMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       200 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      ...+.++|..|...|+-.. ...|......+...|++.+|..+|+..++.+-.|
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            4566666666665544322 2345555566666666666666666666665555

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=84.05  E-value=11  Score=27.81  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782          235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP  288 (350)
Q Consensus       235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  288 (350)
                      ...+.++|..|...|+--....|-.--..+....|++.+|.++|+.-++.+-.|
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            556666666666555544433333222223333366666666666666555444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.36  E-value=8.2  Score=29.93  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=28.3

Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782          229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE  284 (350)
Q Consensus       229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  284 (350)
                      ..+.|++++++.....-++.. +-|...=..++.-+|.. |++++|.+=++...+.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~-G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCID-GDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Confidence            345566666666555555442 12344444455555544 6666666666555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 16/235 (6%)

Query: 58  GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR---EMRSIGAEPDA 114
           G+L  A  LF+  +++  P  + A   L     +      A   LR   E++        
Sbjct: 33  GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 91

Query: 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----------VFTYNCIIRKLCKNEK 164
                F +   +      +   L     Y  +            +     I+  L  +  
Sbjct: 92  ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 151

Query: 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNM 224
             E  +L    +       +      L    + +                   D   +N 
Sbjct: 152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 211

Query: 225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE 279
           +   L    + + A   +    +       S Y++ +   C   G   EA ++F 
Sbjct: 212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI--SCINLGAHREAVEHFL 264

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 6/142 (4%)

Query: 58  GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI--GAEPDAF 115
           G+L +A +L  E ++   P D    +S +E +C  G+ + A   L +   +     P A 
Sbjct: 10  GQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175
                + A     D     +   + K       +            ++  E+  +L  ++
Sbjct: 69  QLRHLVKAAQARKD---FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125

Query: 176 IERGANPDEWSYNAILAYHCDR 197
            E        + +   +   D 
Sbjct: 126 EELRQEKGFLANDTSFSDVRDI 147

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 6/205 (2%)

Query: 75  CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF 134
            P   +A ++L       G I  A     +  ++       +Y    +   EA       
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAV 223

Query: 135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194
                    +   +   +  +     +   ++ A       IE   +    +Y  +    
Sbjct: 224 AAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANAL 281

Query: 195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV 254
            ++  V  A        +          N+   +    G  + A  ++    +   +P  
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLA-NIKREQGNIEEAVRLYRKALEV--FPEF 338

Query: 255 STYSVMVHGLCKKKGKLEEACKYFE 279
           +     +  + +++GKL+EA  +++
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYK 363

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.5
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.4
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.4
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.32
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.3
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.98
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.97
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.91
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.67
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.56
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.54
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.26
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.22
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.21
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.11
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.0
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.91
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.78
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.54
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.43
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.0
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.64
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.11
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.82
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.6
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.18
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.92
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	80.48

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-22  Score=167.62  Aligned_cols=306  Identities=11%  Similarity=0.082  Sum_probs=254.4

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      +...+.+.|++++|.+.++++....|.++.++..+..++...|++++|...|++..+..+ -+..+|..+..++...|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence            345677889999999999998887788889999999999999999999999999888743 3778899999999999999


Q ss_pred             HHHHHHHHHHHhCCCC----------------------------------------------------------------
Q 018782           96 DEAHGMLREMRSIGAE----------------------------------------------------------------  111 (350)
Q Consensus        96 ~~a~~~~~~~~~~~~~----------------------------------------------------------------  111 (350)
                      ++|+..+....+....                                                                
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence            9999888877653211                                                                


Q ss_pred             ---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 018782          112 ---PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYN  188 (350)
Q Consensus       112 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  188 (350)
                         .+...+..+...+...|+++.|...+++..+.. +.+..++..+...+...|++++|...++.....+.. +...+.
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  241 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG  241 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHH
Confidence               112344555666777889999999999887764 446778889999999999999999999999887544 677788


Q ss_pred             HHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc
Q 018782          189 AILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK  268 (350)
Q Consensus       189 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~  268 (350)
                      .+...+.+.|++++|...+++..+..+ .+..++..+..++...|++++|...++..... .+.+...+..+...+... 
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-  318 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ-  318 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHC-
Confidence            888999999999999999999988653 45678889999999999999999999998875 234666777777776655 


Q ss_pred             CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782          269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA  328 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  328 (350)
                      |++++|++.|++.++.. |.+..++..+..++.+.|++++|...+++..+.+|..+....
T Consensus       319 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  377 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999998876 667889999999999999999999999999998887766544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.2e-20  Score=152.79  Aligned_cols=289  Identities=14%  Similarity=0.082  Sum_probs=245.7

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------------
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP------------   76 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------   76 (350)
                      ++..+..+..++...|++++|...|+++....|.+..++..+..++...|++++|+..+....+....            
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  111 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL  111 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccc
Confidence            56778888899999999999999999998877889999999999999999999999999877554211            


Q ss_pred             -------------------------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782           77 -------------------------------------------------------VDILAHNSLLEAMCKAGNIDEAHGM  101 (350)
Q Consensus        77 -------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~  101 (350)
                                                                             .+...+..+...+...|++++|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  191 (388)
T d1w3ba_         112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH  191 (388)
T ss_dssp             HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHH
Confidence                                                                   1234556666777888999999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 018782          102 LREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN  181 (350)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  181 (350)
                      +++..+.. +-+...+..+...+...|++++|...++.....+ +.+...+..+..++.+.|++++|...|++..+..+.
T Consensus       192 ~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  269 (388)
T d1w3ba_         192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            99998753 3456788889999999999999999999998765 456778888999999999999999999999987544


Q ss_pred             CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHH
Q 018782          182 PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVM  260 (350)
Q Consensus       182 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l  260 (350)
                       +..++..+...+...|++++|.+.++...... +.+...+..+..++...|++++|...|++..+.  .|+ ...+..+
T Consensus       270 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l  345 (388)
T d1w3ba_         270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNL  345 (388)
T ss_dssp             -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence             67889999999999999999999999988764 457788899999999999999999999999875  444 5566667


Q ss_pred             HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782          261 VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF  305 (350)
Q Consensus       261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  305 (350)
                      ...+... |++++|...|+++++.. |-+...+..++.++.+.||
T Consensus       346 a~~~~~~-g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         346 ASVLQQQ-GKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTT-TCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            7776655 99999999999999876 6678899999999998886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5e-15  Score=119.93  Aligned_cols=229  Identities=11%  Similarity=-0.002  Sum_probs=139.2

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782           13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA   92 (350)
Q Consensus        13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (350)
                      .-.....+.+.|++++|...|+.+.+..|.+..+|..+..++...|++++|...|++..+..+. +...|..+..++...
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~  100 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence            3345667889999999999999998877888999999999999999999999999998887543 788888899999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhhH----------------HHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHH
Q 018782           93 GNIDEAHGMLREMRSIGAEPDAFSY----------------SIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCI  155 (350)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l  155 (350)
                      |++++|.+.++......  |+....                ...+..+...+...++...+.+..+.. -..+..++..+
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999988753  221111                001111222233444444444443321 11233444444


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH
Q 018782          156 IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRF  235 (350)
Q Consensus       156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  235 (350)
                      ...+...|++++|...+++.....+. +..+|..+...+...|++++|.+.+++..+..+ -+...+..+..+|.+.|++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCH
Confidence            44555555555555555554444322 344444444555555555555555555444321 1333444455555555555


Q ss_pred             hHHHHHHHHHH
Q 018782          236 DRATEVWESME  246 (350)
Q Consensus       236 ~~a~~~~~~~~  246 (350)
                      ++|...|++..
T Consensus       257 ~~A~~~~~~al  267 (323)
T d1fcha_         257 REAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-14  Score=117.93  Aligned_cols=257  Identities=14%  Similarity=0.039  Sum_probs=193.2

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782           48 SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA  127 (350)
Q Consensus        48 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  127 (350)
                      ......+.+.|++++|+..|+++++..+. +..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            35677888999999999999999988543 78899999999999999999999999998864 34567888899999999


Q ss_pred             CCHhHHHHHHHHHhhCCCCccHH----------------HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 018782          128 NDIHSVFRVLDSMKRYNLVPNVF----------------TYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAI  190 (350)
Q Consensus       128 ~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l  190 (350)
                      |++++|.+.++......  |+..                .....+..+...+.+.+|...+.+..+.... ++...+..+
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999987643  2211                1111222334456678888888887765432 356677788


Q ss_pred             HHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782          191 LAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK  270 (350)
Q Consensus       191 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  270 (350)
                      ...+...|++++|...++....... -+...|..+..++...|++++|.+.|++..+... -+...+..+..++... |+
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~-g~  255 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINL-GA  255 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHC-CC
Confidence            8888899999999999999887643 3567888899999999999999999999887522 2455677777776655 99


Q ss_pred             HHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782          271 LEEACKYFEMMVDEG----------IPPYSSTVEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       271 ~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~  311 (350)
                      +++|++.|++.++..          .......|..+..++...|+.+.+..
T Consensus       256 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999887631          12233455666666666666655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.3e-11  Score=97.26  Aligned_cols=220  Identities=10%  Similarity=0.072  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782           26 VKVAHQFFDNAKHEFTPTVKTYSILVRGLGDV--------------GELSEARKLFDEMLERKCPVDILAHNSLLEAMCK   91 (350)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (350)
                      .+.+..+|+++....|.++..|...+..+-..              +..++|..+|++..+...+.+...|...+.....
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            34566777777776677777776665544322              2345666677776654444455566666666677


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH-HHccCCHHHHHH
Q 018782           92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK-LCKNEKVEEAYQ  170 (350)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~  170 (350)
                      .|+++.|..+|+++++.........|...+..+.+.|+.+.|..+|+.+.+.+ +.+...|...... +...|+.+.|..
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            77777777777777664322223356666666667777777777777766654 2233333333322 233466666777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          171 LLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV-MPD--RHTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      +|+.+.+..+. +...|...+..+...|+.+.|..+|++...... .|.  ...|...+..-...|+.+.+.++++++.+
T Consensus       191 i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         191 IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77666665322 456666666666666677777777766655421 221  23555556555666666666666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-11  Score=97.26  Aligned_cols=216  Identities=10%  Similarity=0.053  Sum_probs=150.0

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEA   88 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   88 (350)
                      ...++.+...+.+.+.+++|+++++.+..-.|.+..+|+....++...| ++++|+..+++..+.... +..+|+.+..+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            3445556666777888888888888888777888888888888877765 478888888888777544 78888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----
Q 018782           89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----  164 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  164 (350)
                      +.+.|++++|++.++++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...|+.+..++.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            888888888888888888753 3467788888888888888888888888887765 3466677766655555443    


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHH
Q 018782          165 --VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLV  230 (350)
Q Consensus       165 --~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~  230 (350)
                        +++|+..+..+.+..+. +...|..+...+.. ...+++.+.++...+....+ +...+..++..|.
T Consensus       200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence              56777777777776543 56666655554443 33466666666665532222 2334444554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1e-10  Score=95.19  Aligned_cols=295  Identities=12%  Similarity=0.084  Sum_probs=202.0

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-C----CHHHHHHH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPT-----VKTYSILVRGLGDVGELSEARKLFDEMLERKCP-V----DILAHNSL   85 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l   85 (350)
                      ....+...|++++|.+++++.....|.+     ...+..+..++...|++++|...|++..+.... +    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            3456778999999999999986644443     346777888999999999999999987653111 1    13455667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh----CCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCccHHHHHH
Q 018782           86 LEAMCKAGNIDEAHGMLREMRS----IGAEPD---AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVPNVFTYNC  154 (350)
Q Consensus        86 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~  154 (350)
                      ...+...|++..+...+.....    .+....   ...+..+...+...|+++.+...+......    +......++..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            7788899999999999888754    211111   234556777888999999999999887543    22233455666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC---hhHHHHH
Q 018782          155 IIRKLCKNEKVEEAYQLLDEMIERG--ANPD----EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD---RHTYNMV  225 (350)
Q Consensus       155 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  225 (350)
                      ....+...+++..+...+.......  ....    ...+..+...+...++++.|...++.........+   ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            6777888899999988887765431  1111    22355556677788999999999988765433222   3345667


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHh----cCCCCCHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCC----CCHHH
Q 018782          226 LKLLVRVGRFDRATEVWESMEK----RGFYPSVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIP----PYSST  292 (350)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~  292 (350)
                      ..++...|++++|...++++..    .+..|+.. .+..+-..+... |++++|.+.+++..+.    |..    .....
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~  336 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-GRKSDAQRVLLDALKLANRTGFISHFVIEGEA  336 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence            8889999999999999988763    23444433 344445555544 9999999999987543    211    12334


Q ss_pred             HHHHHHHHHcCCChhHHHH
Q 018782          293 VEMLRNRLVGLGFLDIIEI  311 (350)
Q Consensus       293 ~~~l~~~~~~~g~~~~a~~  311 (350)
                      +..++..+...+..+++.+
T Consensus       337 ~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         337 MAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHhcCCChHHHH
Confidence            5556666667777666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-10  Score=93.36  Aligned_cols=215  Identities=8%  Similarity=0.029  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      ...++.+...+.+.+.+++|++.++++++.++. +..+|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            466777888888999999999999999998654 8889999998888876 5899999999998864 346778999999


Q ss_pred             HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc----
Q 018782          123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA----  198 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----  198 (350)
                      .+.+.|++++|+..++++.+.. +.+..+|..+..++...|++++|++.++++++.++. +...|+.+...+.+.+    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            9999999999999999998875 557899999999999999999999999999998655 6777776666554443    


Q ss_pred             --CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 018782          199 --EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGL  264 (350)
Q Consensus       199 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~  264 (350)
                        .+++|+..+....+..+ .+...|..+...+. ....+++...++...+....+ +...+..+...+
T Consensus       199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence              36788888888887643 46677776665544 445688888888877643332 344444454444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.4e-10  Score=91.23  Aligned_cols=219  Identities=9%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782           61 SEARKLFDEMLERKCPVDILAHNSLLEAMCKA--------------GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE  126 (350)
Q Consensus        61 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (350)
                      +.+..+|+++... .+.++..|...+..+...              +..++|..+|++..+...+.+...|...+.....
T Consensus        33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4455567666654 333556665554433222              2235555666665554333344455555555556


Q ss_pred             cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcccCHHHHHH
Q 018782          127 ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAY-HCDRAEVNMALR  205 (350)
Q Consensus       127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~  205 (350)
                      .|+++.|..+|+.+.+........+|...+..+.+.|+++.|.++|.++.+.+.. +...|...... +...|+.+.|..
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence            6666666666666555432222334555555555666666666666665554332 22222222221 223455555666


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 018782          206 LITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-FYPS--VSTYSVMVHGLCKKKGKLEEACKYFEMMV  282 (350)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~  282 (350)
                      +|+.+.... +.+...|...+..+...|+++.|+.+|++..+.. ..|+  ...|...+.- -...|+.+.+.++++++.
T Consensus       191 i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f-E~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF-ESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH-HHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Confidence            665555542 2344555555555555566666666666555431 1221  2334444432 223355555555555554


Q ss_pred             h
Q 018782          283 D  283 (350)
Q Consensus       283 ~  283 (350)
                      +
T Consensus       269 ~  269 (308)
T d2onda1         269 T  269 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.8e-10  Score=93.71  Aligned_cols=274  Identities=12%  Similarity=0.069  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----H
Q 018782           44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----A  114 (350)
Q Consensus        44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~  114 (350)
                      +.........+...|++++|++++++..+.....+    ..++..+..++...|++++|+..|++..+... .++    .
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            34455566778899999999999999987643322    34677788999999999999999999875321 111    2


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhh----CCCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CC
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKR----YNLVP---NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN----PD  183 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~  183 (350)
                      ..+..+...+...|++..+...+.....    .+...   ....+..+...+...|+++.+...+.........    ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            3556677788899999999998887643    11111   2235566778889999999999999988765322    22


Q ss_pred             HHHHHHHHHHHhcccCHHHHHHHHHHHHhCC--CCC----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC---H
Q 018782          184 EWSYNAILAYHCDRAEVNMALRLITRMTKEN--VMP----DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS---V  254 (350)
Q Consensus       184 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~  254 (350)
                      ..++......+...++...+...+.......  ...    ....+..+...+...|++++|...++.........+   .
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  251 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  251 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence            3445556667778889998888887754421  111    123456667788899999999999998775422222   3


Q ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          255 STYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIPP-YSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      ..+..+...+... |++++|...++++...    +..| ...++..+..+|.+.|++++|.+.+++..+
T Consensus       252 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         252 GQWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444555666655 9999999999987632    3233 345788889999999999999999998754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.1e-12  Score=101.93  Aligned_cols=260  Identities=8%  Similarity=-0.051  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHhhhcCCCCHHHHHHHHHHHh----------ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-
Q 018782           26 VKVAHQFFDNAKHEFTPTVKTYSILVRGLG----------DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN-   94 (350)
Q Consensus        26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-   94 (350)
                      .++|+++++.+....|.+...|+..-..+.          ..|++++|+..++...+..+. +...|..+..++...++ 
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccc
Confidence            456666666665555555555543322221          123355666666666555322 55555555555554443 


Q ss_pred             -HHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 018782           95 -IDEAHGMLREMRSIGAEPDAFSYS-IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL  172 (350)
Q Consensus        95 -~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  172 (350)
                       +++|...+..+.+.. +++...+. .....+...+..+.|+..++.+.+.. +-+...|..+..++.+.|++++|...+
T Consensus       124 ~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence             556666666665542 22333332 23344455566666666666665544 334555666666666666655554443


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782          173 DEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP  252 (350)
Q Consensus       173 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  252 (350)
                      ....+..  |+   .......+...+..+.+...+........ ++...+..+...+...+++.+|...+.+..+.  .|
T Consensus       202 ~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p  273 (334)
T d1dcea1         202 RLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE--NK  273 (334)
T ss_dssp             SSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CH
T ss_pred             HHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--Cc
Confidence            3322220  00   01111222333444445555555444332 23334444445555555556666555555543  22


Q ss_pred             CH-HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782          253 SV-STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN  298 (350)
Q Consensus       253 ~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  298 (350)
                      +. ..+..+...+. ..|++++|.+.++++++.+ |.+...|..+..
T Consensus       274 ~~~~~~~~l~~~~~-~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~  318 (334)
T d1dcea1         274 WCLLTIILLMRALD-PLLYEKETLQYFSTLKAVD-PMRAAYLDDLRS  318 (334)
T ss_dssp             HHHHHHHHHHHHHC-TGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence            22 22233333333 3356666666666655544 223344444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=3.1e-11  Score=93.86  Aligned_cols=118  Identities=8%  Similarity=-0.032  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782           59 ELSEARKLFDEMLERKCPV---DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR  135 (350)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  135 (350)
                      +.+.++.-++++.......   ...+|..+..+|.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            3444555555555432111   12344555556666666666666666666542 2344555556666666666666666


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          136 VLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      .|+++.+.. +.+..++..+..++...|++++|...++...+.
T Consensus        93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            666665543 223445555555566666666666666665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1e-10  Score=90.87  Aligned_cols=218  Identities=13%  Similarity=0.031  Sum_probs=150.2

Q ss_pred             CChHHHHHHHHHhhhcCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018782           24 KHVKVAHQFFDNAKHEFT----PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH   99 (350)
Q Consensus        24 g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   99 (350)
                      .+.+.++.-++++....+    ....+|..+..+|.+.|++++|++.|++.++..+. ++.+|+.+..++.+.|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhh
Confidence            345566666666654222    23457888889999999999999999999987543 7889999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      +.|+++.+.. +-+..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+........
T Consensus        92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (259)
T d1xnfa_          92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  169 (259)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence            9999999864 2356678888999999999999999999988764 3345554445555566666666666666555543


Q ss_pred             CCCCHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782          180 ANPDEWSYNAILAYHCDR----AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR  248 (350)
Q Consensus       180 ~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  248 (350)
                      .  +...+. ++..+...    +..+.+...+....... +-...+|..+...+...|++++|.+.|+.....
T Consensus       170 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         170 K--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             C--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             h--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            2  222222 22222222    22333333333222211 112356777899999999999999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=4.4e-11  Score=96.78  Aligned_cols=266  Identities=9%  Similarity=-0.051  Sum_probs=190.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782           48 SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM----------CKAGNIDEAHGMLREMRSIGAEPDAFSY  117 (350)
Q Consensus        48 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~  117 (350)
                      ..++......+..++|+++++++++..+. +...|+..-..+          ...|.+++|+.+++...+.. +-+...|
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~  110 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW  110 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence            33433334444568999999999987433 555665443332          23445789999999998764 3466677


Q ss_pred             HHHHHHHHhcC--CHhHHHHHHHHHhhCCCCccHHHHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782          118 SIFIHAFCEAN--DIHSVFRVLDSMKRYNLVPNVFTYN-CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH  194 (350)
Q Consensus       118 ~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  194 (350)
                      ..+..++...+  +++++...++.+.+.. +++...+. .....+...+.+++|+..++.+.+.++. +...|..+..++
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~  188 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL  188 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence            77777776665  4889999999998764 34555554 4456777889999999999999988655 788899999999


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHH
Q 018782          195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEA  274 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a  274 (350)
                      ...|++++|...+......  .|+   ...+...+...+..+++...+........ ++...+..+...+... |+.++|
T Consensus       189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~-~~~~~a  261 (334)
T d1dcea1         189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVL-QSELES  261 (334)
T ss_dssp             HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHH-HHHHHH
T ss_pred             HHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHH-hhHHHH
Confidence            9999988776655443332  111   12234455667888888888888876532 2333344444444444 899999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782          275 CKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ  325 (350)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  325 (350)
                      ...+.+..... |.+..++..++.++...|++++|.+.++++.+.+|....
T Consensus       262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            99999988776 557788899999999999999999999999998875543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=4.5e-08  Score=76.96  Aligned_cols=132  Identities=7%  Similarity=-0.071  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhC----CC-CccHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHc----CCCC-CH
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRY----NL-VPNVFTYNCIIRKLC-KNEKVEEAYQLLDEMIER----GANP-DE  184 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~  184 (350)
                      +|..+..+|.+.|++++|...++...+.    |. .....++..+...|. ..|++++|.+.+.+..+.    +..+ -.
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            4444444455555555555544443221    10 011223333333442 235555555555544321    1000 12


Q ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh------hHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782          185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR------HTYNMVLKLLVRVGRFDRATEVWESMEK  247 (350)
Q Consensus       185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~  247 (350)
                      .++..+...+...|++++|...++++.........      ..+...+.++...|+++.|...+++..+
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            23444555555556666666665555443211110      1122333444555666666666665554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.8e-08  Score=70.69  Aligned_cols=122  Identities=13%  Similarity=-0.012  Sum_probs=87.6

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      ...+...|+++.|++.|+.+   .++++.+|..+..++...|++++|++.|++.++.+.. +...|..+..++.+.|+++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence            44556788888888888765   3567778888888888888888888888888887543 7778888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782           97 EAHGMLREMRSIGAEPD----------------AFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      +|++.|++..... +.+                ..++..+..++.+.|++++|.+.++...+.
T Consensus        88 ~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8888888876531 111                123444555666666666666666666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=5.5e-08  Score=76.42  Aligned_cols=201  Identities=10%  Similarity=-0.032  Sum_probs=135.9

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----HHHHHH
Q 018782          120 FIHAFCEANDIHSVFRVLDSMKRY----NLVP-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-D----EWSYNA  189 (350)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~  189 (350)
                      ....|...+++++|...|.+..+.    +-++ -..+|..+..+|.+.|++++|...+++..+..... +    ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            356777888999999888877542    2112 24678889999999999999999999876531111 1    344555


Q ss_pred             HHHHHh-cccCHHHHHHHHHHHHhC----CCCC-ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-----CHH-HH
Q 018782          190 ILAYHC-DRAEVNMALRLITRMTKE----NVMP-DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-----SVS-TY  257 (350)
Q Consensus       190 ll~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~-~~  257 (350)
                      +...|. ..++++.|.+.++...+.    +..+ ...++..+...+...|++++|...|+++.......     ... .+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 469999999999887542    1111 13457888999999999999999999988652221     111 12


Q ss_pred             HHHHHHHhhccCcHHHHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHc--CCChhHHHHHHHHhhccCC
Q 018782          258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIP-P---YSSTVEMLRNRLVG--LGFLDIIEILADKMERSTS  321 (350)
Q Consensus       258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~  321 (350)
                      ...+..+... |+++.|...+++..+.... +   .......++.++..  .+.+++|+..|+++.+.++
T Consensus       203 ~~~~~~~l~~-~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         203 LKKGLCQLAA-TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHh-ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence            2233333334 9999999999999876411 1   23355667777765  3568889988888777653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.4e-08  Score=64.51  Aligned_cols=92  Identities=13%  Similarity=-0.077  Sum_probs=62.6

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      -...+...|++++|+..|+.+....|.++..|..+..++...|++++|+..+++..+.++ .+...|..+..++...|++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence            345566667777777777776666666677777777777777777777777777666543 3666667777777777777


Q ss_pred             HHHHHHHHHHHhC
Q 018782           96 DEAHGMLREMRSI  108 (350)
Q Consensus        96 ~~a~~~~~~~~~~  108 (350)
                      ++|+..|++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-07  Score=69.16  Aligned_cols=86  Identities=10%  Similarity=-0.046  Sum_probs=44.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782           51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI  130 (350)
Q Consensus        51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (350)
                      ...+...|+++.|++.|+++    .+|+..+|..+..++...|++++|++.|++.++.. +-+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            34444555555555555432    22344555555555555555555555555555542 22344555555555555555


Q ss_pred             hHHHHHHHHHh
Q 018782          131 HSVFRVLDSMK  141 (350)
Q Consensus       131 ~~a~~~~~~~~  141 (350)
                      ++|...|++..
T Consensus        87 ~~A~~~~~kAl   97 (192)
T d1hh8a_          87 DLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.7e-08  Score=73.62  Aligned_cols=100  Identities=18%  Similarity=0.071  Sum_probs=71.5

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      .|+...+......+.+.|++++|+..|+++....|.++..|..+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            3666666677777777777777777777776666777777777777777777777777777777765322 566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 018782           87 EAMCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~  107 (350)
                      .++...|++++|+..|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.4e-07  Score=66.72  Aligned_cols=90  Identities=12%  Similarity=-0.030  Sum_probs=52.5

Q ss_pred             HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782           18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE   97 (350)
Q Consensus        18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (350)
                      ..+.+.|++++|...|+++..-.|.+...|..+..++...|++++|...|++.++.... +..+|..+..++...|++++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHH
Confidence            44555666666666666655555555666666666666666666666666665554322 45555556666666666666


Q ss_pred             HHHHHHHHHhC
Q 018782           98 AHGMLREMRSI  108 (350)
Q Consensus        98 a~~~~~~~~~~  108 (350)
                      |...+++....
T Consensus        97 A~~~~~~a~~~  107 (159)
T d1a17a_          97 ALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666665553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.7e-07  Score=61.39  Aligned_cols=92  Identities=14%  Similarity=0.032  Sum_probs=59.6

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782           50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND  129 (350)
Q Consensus        50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  129 (350)
                      -...+...|++++|+..|++.++..+ .+...|..+..++...|++++|+..+....+.. +.+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            34556666777777777777666533 256666666667777777777777777666653 3455566666666666777


Q ss_pred             HhHHHHHHHHHhhC
Q 018782          130 IHSVFRVLDSMKRY  143 (350)
Q Consensus       130 ~~~a~~~~~~~~~~  143 (350)
                      +++|+..|++..+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777776666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.75  E-value=7e-08  Score=63.76  Aligned_cols=89  Identities=15%  Similarity=0.025  Sum_probs=52.0

Q ss_pred             HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782           16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI   95 (350)
Q Consensus        16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (350)
                      ....+.+.|++++|...|+++....|.++.+|..+..++.+.|++++|+..|++..+..+ .+..+|..+..++...|++
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCH
Confidence            344455566666666666665555555566666666666666666666666666555532 2455556666666666666


Q ss_pred             HHHHHHHHHH
Q 018782           96 DEAHGMLREM  105 (350)
Q Consensus        96 ~~a~~~~~~~  105 (350)
                      ++|++.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.2e-07  Score=64.21  Aligned_cols=94  Identities=9%  Similarity=0.027  Sum_probs=62.9

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN  128 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (350)
                      .....+.+.|++++|+..|++.++... -+...|..+..++...|++++|...|++.++.. +-+..+|..+..++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            345566677777777777777776643 366677777777777777777777777776653 334556666777777777


Q ss_pred             CHhHHHHHHHHHhhCC
Q 018782          129 DIHSVFRVLDSMKRYN  144 (350)
Q Consensus       129 ~~~~a~~~~~~~~~~~  144 (350)
                      ++++|...+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            7777777777766643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=9.7e-08  Score=63.88  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCH---HHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018782           14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL---SEARKLFDEMLERKCPVD-ILAHNSLLEAM   89 (350)
Q Consensus        14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~   89 (350)
                      ..+++.+...+++++|.+.|+......|.++.++..+..++.+.++.   ++|+.+|+++...+..|+ ..++..+..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45677777888888888888888777788888888888888765544   458888888777643333 34677788888


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 018782           90 CKAGNIDEAHGMLREMRSI  108 (350)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~  108 (350)
                      .+.|++++|++.|+++++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            8888888888888888874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=2.4e-05  Score=59.97  Aligned_cols=232  Identities=6%  Similarity=-0.059  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNCI  155 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  155 (350)
                      ..+..|...+...+++++|++.|++..+.|   +...+..|...|..    ..+...+..+++.....+   +......+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            344444444445555555555555555443   23333334444433    334555555555554443   12222222


Q ss_pred             HHHHH----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cccCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 018782          156 IRKLC----KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC----DRAEVNMALRLITRMTKENVMPDRHTYNMVLK  227 (350)
Q Consensus       156 ~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  227 (350)
                      ...+.    ...+.+.|...++.....|..   .....+...+.    .......+...+......   .+...+..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~  150 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS  150 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence            22222    133455555555555554321   11111211111    233445555555554442   23455555555


Q ss_pred             HHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh---ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782          228 LLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK---KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL  300 (350)
Q Consensus       228 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  300 (350)
                      .+..    ..+...+...++...+.|   +......+-..+..   ...++++|+.+|++..+.|   ++..+..|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y  224 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence            5554    344556666666666543   33333333333332   1257888888888887776   456666777777


Q ss_pred             Hc----CCChhHHHHHHHHhhccCCCcHHHHHH
Q 018782          301 VG----LGFLDIIEILADKMERSTSCTIQELAN  329 (350)
Q Consensus       301 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  329 (350)
                      .+    ..+.++|.++|++....+..+....+.
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l~  257 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKLGAKGACDILK  257 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            65    347788888888887776555444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.5e-07  Score=67.37  Aligned_cols=96  Identities=9%  Similarity=-0.026  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782           43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH  122 (350)
Q Consensus        43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  122 (350)
                      +...+......+.+.|++++|+..|++.++..+ .+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            334444444444455555555555554444422 244444444444455555555555554444421 112334444444


Q ss_pred             HHHhcCCHhHHHHHHHHH
Q 018782          123 AFCEANDIHSVFRVLDSM  140 (350)
Q Consensus       123 ~~~~~~~~~~a~~~~~~~  140 (350)
                      ++...|++++|...|++.
T Consensus        81 ~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            444444444444444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.57  E-value=6.2e-05  Score=57.56  Aligned_cols=95  Identities=14%  Similarity=0.024  Sum_probs=43.4

Q ss_pred             HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782           10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDILAHNSL   85 (350)
Q Consensus        10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   85 (350)
                      +..+..|...+...+++++|+++|++..+.  -+...+..|..+|..    ..+...|...+....+.+   ++.....+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            444455555555555666666665555431  133444444444443    345555555555554443   22333333


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhCC
Q 018782           86 LEAMCK----AGNIDEAHGMLREMRSIG  109 (350)
Q Consensus        86 ~~~~~~----~~~~~~a~~~~~~~~~~~  109 (350)
                      ...+..    ..+.+.|...++...+.|
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhh
Confidence            332222    234445555555554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.56  E-value=6.8e-07  Score=58.81  Aligned_cols=90  Identities=13%  Similarity=0.049  Sum_probs=59.3

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782           49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN  128 (350)
Q Consensus        49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  128 (350)
                      .+...+.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|+..|++..+.. +.+...+..+..+|...|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence            3455666677777777777776665433 56677777777777777777777777766653 334556666677777777


Q ss_pred             CHhHHHHHHHHH
Q 018782          129 DIHSVFRVLDSM  140 (350)
Q Consensus       129 ~~~~a~~~~~~~  140 (350)
                      ++++|.+.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777766654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.54  E-value=9.4e-05  Score=58.13  Aligned_cols=271  Identities=11%  Similarity=0.081  Sum_probs=164.3

Q ss_pred             CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782            7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL   86 (350)
Q Consensus         7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~   86 (350)
                      .|+...-..+.+.|.+.|.++.|..+|..+..        |..++..+.+.++++.|.+++.+.-      +..+|..+.
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~   76 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC   76 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence            35666667788889999999999999998764        6778889999999999988886542      678999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782           87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE  166 (350)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  166 (350)
                      ..+.+......+     .+...+...++.....++..|-..|.++....+++...... ..+...++.++..|++.+ .+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQ  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hH
Confidence            999988776543     22233344566667789999999999999999999876542 467778889999998875 44


Q ss_pred             HHHHHHHHHHHcCCCCCHH----------HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHh
Q 018782          167 EAYQLLDEMIERGANPDEW----------SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFD  236 (350)
Q Consensus       167 ~a~~~~~~~~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  236 (350)
                      +..+.+....   ...+..          .|..++..|.+.++++.|..++   ..+  .++..-....+..+.+..+.+
T Consensus       150 kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e  221 (336)
T d1b89a_         150 KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE  221 (336)
T ss_dssp             HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred             HHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence            4444443321   111211          1344445555555555554433   221  234444455666777777777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHH-------------HHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 018782          237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACK-------------YFEMMVDEGIPPYSSTVEMLRNRLVGL  303 (350)
Q Consensus       237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~  303 (350)
                      ...++.....+.  .|+  ..+.++...... -+..+..+             +++.....+   +..+...+...|...
T Consensus       222 ~~~~~i~~yL~~--~p~--~i~~lL~~v~~~-~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~  293 (336)
T d1b89a_         222 LYYRAIQFYLEF--KPL--LLNDLLMVLSPR-LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITE  293 (336)
T ss_dssp             HHHHHHHHHHHH--CGG--GHHHHHHHHGGG-CCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc--CHH--HHHHHHHHhccC-CCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCc
Confidence            777666665553  232  234444443333 34444444             444434433   567888999999999


Q ss_pred             CChhHHHHHHH
Q 018782          304 GFLDIIEILAD  314 (350)
Q Consensus       304 g~~~~a~~~~~  314 (350)
                      ++++.-....+
T Consensus       294 ~d~~~l~~~i~  304 (336)
T d1b89a_         294 EDYQALRTSID  304 (336)
T ss_dssp             TCHHHHHHHHH
T ss_pred             chhHHHHHHHH
Confidence            98765544443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=8.6e-07  Score=59.10  Aligned_cols=104  Identities=8%  Similarity=0.075  Sum_probs=61.1

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc---CHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Q 018782          154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA---EVNMALRLITRMTKENVMPD-RHTYNMVLKLL  229 (350)
Q Consensus       154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  229 (350)
                      .+++.+...+++++|.+.|++....++. +..++..+..++.+.+   +.++|+.+++.+...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4555666666777777777776666433 5566666666665433   34456666766665443232 12455666677


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782          230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVM  260 (350)
Q Consensus       230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  260 (350)
                      .+.|++++|.+.|+++.+.  .|+......+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l  111 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT--EPQNNQAKEL  111 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence            7777777777777777664  4554433333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.6e-06  Score=57.45  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC-----HHHHHHHHHH
Q 018782           15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD-----ILAHNSLLEA   88 (350)
Q Consensus        15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~~~   88 (350)
                      .+...+...|++++|+..|++.....|.+..++..+..+|.+.|++++|+..++++++.... +.     ..+|..+...
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666665555556666666666666666666666666665542111 00     1244445555


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 018782           89 MCKAGNIDEAHGMLREMRS  107 (350)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~  107 (350)
                      +...+++++|++.|.....
T Consensus        89 ~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            5555566666666655544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.6e-06  Score=57.60  Aligned_cols=62  Identities=13%  Similarity=0.008  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782           81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus        81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      +|+.+..+|.+.|++++|+..++..++.. +.++.++..+..++...|++++|...|+...+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34445555555666666666665555542 224455555555556666666666666655553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.2e-05  Score=57.06  Aligned_cols=60  Identities=12%  Similarity=0.025  Sum_probs=28.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782          152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTK  212 (350)
Q Consensus       152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  212 (350)
                      |+.+..+|.+.|++++|+..++..+..++. +..++..+..++...|++++|...|+...+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333444444455555555555444444322 344444444444455555555555555444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-05  Score=54.11  Aligned_cols=95  Identities=11%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HhhHHHH
Q 018782           47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-PD-----AFSYSIF  120 (350)
Q Consensus        47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l  120 (350)
                      +..+...+...|++++|+..|++.++.++. +..++..+..+|.+.|++++|++.++++++.... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            445666777777888888888777776433 6777777777777778887777777777653110 01     1244555


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhh
Q 018782          121 IHAFCEANDIHSVFRVLDSMKR  142 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~  142 (350)
                      ...+...+++++|+..|++...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            5566666677777777766554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.29  E-value=2e-05  Score=54.81  Aligned_cols=64  Identities=11%  Similarity=-0.058  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782           80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN  144 (350)
Q Consensus        80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  144 (350)
                      .+|..+..+|.+.|++++|++.+...++.. +.+..+|..+..++...|++++|...|++..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            355566667777777777777777776653 3355667777777777777777777777776643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.26  E-value=3.6e-05  Score=53.41  Aligned_cols=62  Identities=11%  Similarity=-0.038  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      +|..+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34444555555555555555555554443 334455555555555555555555555555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.24  E-value=4.8e-06  Score=57.39  Aligned_cols=73  Identities=14%  Similarity=-0.057  Sum_probs=53.5

Q ss_pred             HHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782           20 LCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDV----------GELSEARKLFDEMLERKCPVDILAHNSLLEAM   89 (350)
Q Consensus        20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   89 (350)
                      |-+.+.+++|+..|+......|.++.++..+..++...          +.+++|+..|++.++.++. +..+|..+..+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence            34556788999999998887888999998888888754          3456777777777776433 667777777776


Q ss_pred             HhcC
Q 018782           90 CKAG   93 (350)
Q Consensus        90 ~~~~   93 (350)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            6544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=2.1e-05  Score=55.77  Aligned_cols=80  Identities=6%  Similarity=-0.034  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782           78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR  157 (350)
Q Consensus        78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  157 (350)
                      ....|..+..++.+.|++++|+..+.++++.. +.+..+|..+..++...|++++|+..|++..+.. +.+..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34455555666666666666666666666543 2345566666666666666666666666665543 234444444444


Q ss_pred             HH
Q 018782          158 KL  159 (350)
Q Consensus       158 ~~  159 (350)
                      +.
T Consensus       154 ~~  155 (169)
T d1ihga1         154 VK  155 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=2.4e-05  Score=55.80  Aligned_cols=122  Identities=14%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782           17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID   96 (350)
Q Consensus        17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (350)
                      .......|++++|.+.|.....-.+-+..         ......+.+...-..+...    ....+..+...+...|+++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l---------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVL---------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTT---------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccccc---------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence            35677899999999999997653221110         0011111122222222222    3456677788888888888


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh-----hCCCCccHHHH
Q 018782           97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK-----RYNLVPNVFTY  152 (350)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  152 (350)
                      +|+..++++.+.. +-+...|..++.++...|+..+|++.|+++.     +.|+.|+..+-
T Consensus        85 ~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          85 AVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            8888888887763 4567778888888888888888888888763     35777776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.5e-06  Score=72.13  Aligned_cols=112  Identities=9%  Similarity=0.001  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782          115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH  194 (350)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  194 (350)
                      ..+..+...+.+.|+.+.|...++......   ...++..+...+...|++++|...|.+..+..+. +...|+.+...+
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~  196 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA  196 (497)
T ss_dssp             ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence            344445555555555555555554443311   1234445555555666666666666666555332 445566666666


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782          195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR  231 (350)
Q Consensus       195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  231 (350)
                      ...|+..+|...|.+..... +|...++..|...+.+
T Consensus       197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            66666666666666655543 2444555555555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.19  E-value=8.1e-05  Score=52.51  Aligned_cols=61  Identities=10%  Similarity=-0.063  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782           82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY  143 (350)
Q Consensus        82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  143 (350)
                      |..+..++.+.|++++|+..++..++.. +.+...|..+..++...|++++|...|+.+.+.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444555555555555555555555432 234445555555555555555555555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=3.5e-05  Score=54.56  Aligned_cols=61  Identities=8%  Similarity=-0.116  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER  178 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  178 (350)
                      +..+..++.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3444444555555555555555554433 234444455555555555555555555555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.11  E-value=0.00016  Score=50.95  Aligned_cols=63  Identities=8%  Similarity=0.014  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      .|..+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|.++....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556666666777777777777666654 4456666666677777777777777777766653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.09  E-value=3.8e-06  Score=64.19  Aligned_cols=53  Identities=11%  Similarity=0.068  Sum_probs=34.7

Q ss_pred             HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782           21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER   73 (350)
Q Consensus        21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   73 (350)
                      .+.|++++|+..++...+..|.+...+..+...++..|++++|.+.|+...+.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45566666666666666656666666666666666666666666666666655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=0.0001  Score=52.49  Aligned_cols=58  Identities=9%  Similarity=0.029  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782          117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM  175 (350)
Q Consensus       117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  175 (350)
                      +..+...+...|++++|+..++++.... +-+...|..++.++...|+.++|++.|+++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3344444445555555555555544432 334444555555555555555555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.3e-06  Score=70.05  Aligned_cols=227  Identities=8%  Similarity=0.009  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782           62 EARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAF-SYSIFIHAFCEANDIHSVFRVLDSM  140 (350)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~  140 (350)
                      +|.+.|++..+.... ....+..+..++...+++++|   |++++..  .|+.. ..+..  ...-...+..+...++..
T Consensus         4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHHh
Confidence            577788877764221 344556677777777777765   6666543  22211 11111  111111234566666666


Q ss_pred             hhCCCCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC
Q 018782          141 KRYNLVPNVFTYNCIIRK--LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD  218 (350)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  218 (350)
                      .+....++..-.......  ....+.++.|+..+....+.. .++...+..+...+.+.++.+.|...+.......  | 
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H-
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-
Confidence            554323333222222211  122344555555444443332 2245566667777778888888887777665422  2 


Q ss_pred             hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782          219 RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLR  297 (350)
Q Consensus       219 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  297 (350)
                      ..++..+...+...|++++|...|++..+.  .| +...|+.+...+... |+..+|+..|.+.+... +|.+.++..|.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~-~~~~~A~~~y~ral~~~-~~~~~a~~nL~  227 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSK-GDHLTTIFYYCRSIAVK-FPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHT-TCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence            356777888888899999999999988876  34 345677776666555 89999999999888876 77888888888


Q ss_pred             HHHHcCC
Q 018782          298 NRLVGLG  304 (350)
Q Consensus       298 ~~~~~~g  304 (350)
                      ..+.+..
T Consensus       228 ~~~~~~~  234 (497)
T d1ya0a1         228 KALSKAL  234 (497)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7776543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=0.0018  Score=50.61  Aligned_cols=261  Identities=10%  Similarity=0.065  Sum_probs=143.4

Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782           41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF  120 (350)
Q Consensus        41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  120 (350)
                      .||..-...++..|.+.|.++.|..+|..+..         |..++..+.+.+++..|.+++.+.      -+..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence            35666667778888899999999999986543         456788889999999998888765      256688888


Q ss_pred             HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782          121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV  200 (350)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  200 (350)
                      ...+.+......+.     +.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence            88888877665432     2223334455666788999999999999999999876542 457778888999888764 4


Q ss_pred             HHHHHHHHHHHhCCCCCC--------hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHH
Q 018782          201 NMALRLITRMTKENVMPD--------RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLE  272 (350)
Q Consensus       201 ~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~  272 (350)
                      ++..+.++.... ...+.        ...|.-++..|.+.|+++.|..+.-.   .  .++.......+..+.+. ++.+
T Consensus       149 ~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~-~N~e  221 (336)
T d1b89a_         149 QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKV-ANVE  221 (336)
T ss_dssp             HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHC-SSTH
T ss_pred             HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHcc-CChH
Confidence            444444443211 11111        11234455555555665555443221   1  11221222223333333 4444


Q ss_pred             HHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcccccc
Q 018782          273 EACKYFEMMVDEGIPPYSSTV-------------EMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGF  337 (350)
Q Consensus       273 ~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  337 (350)
                      ...++.....+..  |  ...             ..+++.+.+.++..-...+++.....+.   ..+.+++.+.+..
T Consensus       222 ~~~~~i~~yL~~~--p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~---~~vn~al~~lyie  292 (336)
T d1b89a_         222 LYYRAIQFYLEFK--P--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN---KSVNESLNNLFIT  292 (336)
T ss_dssp             HHHHHHHHHHHHC--G--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--H--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcCh---HHHHHHHHHHHhC
Confidence            4444444443321  1  122             2344455556666666666666555432   2455555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.95  E-value=2.3e-05  Score=59.75  Aligned_cols=123  Identities=16%  Similarity=0.123  Sum_probs=79.4

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhH
Q 018782           54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCEANDIHS  132 (350)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  132 (350)
                      ..+.|++++|+..+++.++..+. +...+..+...++..|++++|...|+...+.  .|+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            45678999999999998887544 8888999999999999999999999998875  343 3344444444433333332


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782          133 VFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG  179 (350)
Q Consensus       133 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  179 (350)
                      +..-.......+-+++...+......+...|+.++|.+.++++.+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            22211111111212233444445566777888888888888887653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.91  E-value=8.9e-05  Score=50.80  Aligned_cols=29  Identities=14%  Similarity=0.020  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 018782          166 EEAYQLLDEMIERGANPDEWSYNAILAYHC  195 (350)
Q Consensus       166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  195 (350)
                      ++|+..|++..+.++. +..+|..+..+|.
T Consensus        58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~   86 (145)
T d1zu2a1          58 QEAITKFEEALLIDPK-KDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence            4455555555544322 3444444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.8e-05  Score=46.35  Aligned_cols=75  Identities=16%  Similarity=0.109  Sum_probs=42.5

Q ss_pred             CHhhHHHHHHHHHccCChHHHHHHHHHhhhc-------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782            9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-------FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA   81 (350)
Q Consensus         9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   81 (350)
                      ++..+..+...+.+.|+++.|...|++....       .+....++..+..++.+.|++++|++.++++++..+. +..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence            4445556666666677777777777665331       1112345666666666666666666666666665322 3444


Q ss_pred             HHH
Q 018782           82 HNS   84 (350)
Q Consensus        82 ~~~   84 (350)
                      ++.
T Consensus        83 ~~N   85 (95)
T d1tjca_          83 NGN   85 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.64  E-value=0.00058  Score=47.22  Aligned_cols=53  Identities=17%  Similarity=0.077  Sum_probs=25.6

Q ss_pred             HHHccCChHHHHHHHHHhhh---cCCC---------CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782           19 ALCKRKHVKVAHQFFDNAKH---EFTP---------TVKTYSILVRGLGDVGELSEARKLFDEML   71 (350)
Q Consensus        19 ~~~~~g~~~~a~~~~~~~~~---~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   71 (350)
                      .+...|++++|++.|++...   ..+.         ....|+.+..+|...|++++|...+++.+
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44455666666666665433   1110         12344455555555555555555555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.54  E-value=0.0012  Score=45.57  Aligned_cols=55  Identities=22%  Similarity=0.152  Sum_probs=28.6

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCC-CC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782           52 RGLGDVGELSEARKLFDEMLERKCP-VD----------ILAHNSLLEAMCKAGNIDEAHGMLREMR  106 (350)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~  106 (350)
                      ..+...|++++|+..|++.++.... |+          ..+|+.+..+|...|++++|...+++.+
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3444556666666666665542111 11          2345555555555566555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00053  Score=42.80  Aligned_cols=69  Identities=13%  Similarity=0.026  Sum_probs=43.5

Q ss_pred             HHHHhhccCcHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHH
Q 018782          261 VHGLCKKKGKLEEACKYFEMMVDEG------IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANA  330 (350)
Q Consensus       261 l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  330 (350)
                      -..+... |++++|+..|++..+..      ......++..+..++.+.|++++|...++++.+.+|..+....|.
T Consensus        12 G~~~~~~-g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_          12 GKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHC-CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3334444 67777777776665321      111245677777777777777777777777777777776655543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.00  E-value=0.018  Score=38.01  Aligned_cols=9  Identities=33%  Similarity=0.464  Sum_probs=3.5

Q ss_pred             HHHHHHHHH
Q 018782           27 KVAHQFFDN   35 (350)
Q Consensus        27 ~~a~~~~~~   35 (350)
                      ++|..+|++
T Consensus        10 ~~A~~~~~k   18 (133)
T d1klxa_          10 KKAIQYYVK   18 (133)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.64  E-value=0.04  Score=36.27  Aligned_cols=112  Identities=11%  Similarity=0.048  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHH
Q 018782           58 GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSV  133 (350)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a  133 (350)
                      .++++|.++|++..+.|.+   .....|.  .....+.++|++++++..+.|   ++.....|...|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence            3677888888888887633   3333333  234567889999999888876   34555556666654    4568889


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCC
Q 018782          134 FRVLDSMKRYNLVPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGA  180 (350)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~  180 (350)
                      .++|++..+.|   ++.....|...|..    ..+.++|..+|++..+.|.
T Consensus        79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999988876   34455555555554    4578899999998888763

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.94  E-value=0.095  Score=33.50  Aligned_cols=136  Identities=11%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChh---HHHHHHHHHHHcCCHh
Q 018782          160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRH---TYNMVLKLLVRVGRFD  236 (350)
Q Consensus       160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~  236 (350)
                      .-.|..++..+++.+.....   +..-|+.++.-....-+-+-..+.++.+-+.   .|..   -...++.++...+.  
T Consensus        13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n~--   84 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT--   84 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC--
T ss_pred             HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhcc--
Confidence            34566666677666666542   4455555555555555555555555554332   1111   11223333333222  


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHh
Q 018782          237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKM  316 (350)
Q Consensus       237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  316 (350)
                                      +...+...+..+..+ |+-+...++++.+.+.+ .+++..+..+..+|.+.|...++.+++.+.
T Consensus        85 ----------------~se~vdlALd~lv~~-~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          85 ----------------LNEHVNKALDILVIQ-GKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             ----------------CCHHHHHHHHHHHHT-TCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------hHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence                            334455556665555 88889999999877766 888999999999999999999999999998


Q ss_pred             hccCC
Q 018782          317 ERSTS  321 (350)
Q Consensus       317 ~~~~~  321 (350)
                      -+.+.
T Consensus       147 Ce~G~  151 (161)
T d1wy6a1         147 CKKGE  151 (161)
T ss_dssp             HHTTC
T ss_pred             HHHhH
Confidence            87764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.60  E-value=0.14  Score=32.76  Aligned_cols=138  Identities=14%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782           56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR  135 (350)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  135 (350)
                      -.|.+++..+++.+....   .+..-||.++-.....-+-+-..++++..-+. +  |.          ..++++.....
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHHHH
Confidence            345566666666555543   14455555555555555555555555444321 1  11          01122222222


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 018782          136 VLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV  215 (350)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  215 (350)
                      .+-.+-     .+...+...++.+...|+-+...++++.+.+. -++++.....+..+|.+.|...++-+++.++-+.|.
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            221111     12233334444455555555555555554442 234444555555555555555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.1  Score=33.50  Aligned_cols=57  Identities=12%  Similarity=0.033  Sum_probs=35.3

Q ss_pred             CcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782          269 GKLEEACKYFEMMVDEGIPPYS-STVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE  326 (350)
Q Consensus       269 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  326 (350)
                      .+.++++.+++++...+ +.+. ..+..+.-+|.+.|++++|.+.++.+.+.+|.+...
T Consensus        52 ~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            45566777776666543 3332 455566666777777777777777776666655544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.82  E-value=0.2  Score=30.24  Aligned_cols=63  Identities=10%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             HHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          257 YSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       257 ~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      |..--..|..... +.-++.+-++.+...++-|++.+..+.+++|.+.+++..|.++++.++.+
T Consensus         7 F~aRy~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_           7 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3443444554434 66677777888888888899999999999999999999999999887754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.29  Score=31.24  Aligned_cols=55  Identities=11%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             cCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782          198 AEVNMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS  255 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  255 (350)
                      .+.++++.+++.+.+.+. .+ ...+..|.-+|.+.|++++|.+.++.+.+.  .|+..
T Consensus        52 ~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~  107 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence            345566666666665431 12 234445556666667777777776666654  44443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=1.1  Score=36.14  Aligned_cols=117  Identities=9%  Similarity=0.024  Sum_probs=75.9

Q ss_pred             cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH----HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782          198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLL----VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE  273 (350)
Q Consensus       198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~  273 (350)
                      .+.+.+..++........ .+..-+..+-...    ...+..+.+...+......+  .+.......+...... +++..
T Consensus       228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~-~~~~~  303 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT-GDRRG  303 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH-TCHHH
T ss_pred             cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHc-CChHH
Confidence            567778888877665432 2333333222222    33466777877777776653  3444444444443444 89999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782          274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS  319 (350)
Q Consensus       274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  319 (350)
                      +...++.|.... .....-..-+.+++...|+.+.|..+|..+...
T Consensus       304 ~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~  348 (450)
T d1qsaa1         304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ  348 (450)
T ss_dssp             HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence            999998875432 334555677889999999999999999998764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.92  E-value=0.33  Score=29.23  Aligned_cols=63  Identities=13%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782          199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH  262 (350)
Q Consensus       199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~  262 (350)
                      +.-+..+-+..+......|++....+.+++|.+.+++..|.++++..+.. ..++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            34455556666666667777777777777777777777777777777643 2223345554443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=80.48  E-value=12  Score=29.69  Aligned_cols=182  Identities=13%  Similarity=0.050  Sum_probs=108.3

Q ss_pred             CCHhHHHHHHHHHhhCCCCccHHHHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHH
Q 018782          128 NDIHSVFRVLDSMKRYNLVPNVFTYN----CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMA  203 (350)
Q Consensus       128 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  203 (350)
                      .+.+.+...+........ .+...+.    .+...+...+..+.+...+......+.  +.......+....+.+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            567778888877755432 2222222    222333445667778777777665532  444444455556677888888


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc------------CCCCC----------------HH
Q 018782          204 LRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR------------GFYPS----------------VS  255 (350)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~p~----------------~~  255 (350)
                      ...+..+... ......-..-+.+++...|+.+.|...|..+...            |..++                ..
T Consensus       305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~  383 (450)
T d1qsaa1         305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP  383 (450)
T ss_dssp             HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred             HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence            8888876543 2223344456778888999999999998887542            11100                00


Q ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782          256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER  318 (350)
Q Consensus       256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  318 (350)
                      .+.. +..+... |....|...|..+...   .+......+.....+.|.++.|+....+...
T Consensus       384 ~~~r-a~~L~~~-g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         384 EMAR-VRELMYW-NLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HHHH-HHHHHHT-TCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHH-HHHHHHc-CCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            1111 1222333 7777777777776643   2455666677777777888777777666543