Citrus Sinensis ID: 018789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEccccHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mdsstnhnyhqqsnpglsrfnsaptaLLVNFTdslesggvnkssfESERLISRFMnsggdnsnnssfqefevkspvsygnsqqscsglpphyprqssamdhnsydlfldqssrvksvnsnlvrqssspaglFAKLsaqngyastkevgsyggvngsngdlspstkrlksqisipsripsslgmlsrvsevesdgpthgkvrngngdtqfystgfsygswndsshfteSFTDMkreqgngelgnstSAEMAAVEKFLqfqdsvpckirakrgcathprsIAERVRRTRISERMRKLQELvpnmdkqtntADMLDLAVDYIKDLQNQFKTLsdnrakckcskiqkpvenqiv
Flexible Loop (DISEMBL)
mdsstnhnyhqqsnpglsrfnSAPTALLVNFtdslesggvnkSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLksqisipsripsslgmlSRVSEVEsdgpthgkvrngngdTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIrakrgcathprsiaervrrtrISERMRklqelvpnmdkqtntADMLDLAVDYIKDLQNQFKTlsdnrakckcskiqkpvenqiv
Low Complexity Region (SEG)
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMnsggdnsnnssFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEvgsyggvngsngDLSPSTKRLKsqisipsripssLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Disordered region (IsUnstruct)
**************************LLV***********************************************************************************************************************************************************************************FYSTGFSYGSW********************************VEKFLQFQDSVPCKIRAKRGCA***********************************ADMLDLAVDYIKDLQNQFKTL*********************
Disordered Region (DISOPRED)
*********************SAPTALLVNFTD****************************************************************************************************************************************************************************************************************************************************************ERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT**********************
Disordered Region (DISEMBL)
**************PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVK***************PPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLS***********HGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Disordered Region (DISPRO)
**************PGLSRFNSAPTALLVNFTDSLES********************************************************************************************GLFAKLSAQNGYASTKEVGSYGG*************************************************************************************************AAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSTNHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q66GR3	359	Transcription factor bHLH	yes	no	0.885	0.863	0.485	1e-76
Q9C690	379	Transcription factor bHLH	no	no	0.891	0.823	0.370	6e-46
Q8H102	362	Transcription factor bHLH	no	no	0.894	0.864	0.359	3e-37
Q9C8P8	259	Transcription factor bHLH	no	no	0.325	0.440	0.569	3e-34
Q9M0R0	262	Transcription factor bHLH	no	no	0.322	0.431	0.572	2e-30
Q9ZW81	297	Transcription factor bHLH	no	no	0.562	0.663	0.417	4e-28
Q9ZUG9	350	Transcription factor bHLH	no	no	0.194	0.194	0.637	9e-17
Q8S3D5	310	Transcription factor bHLH	no	no	0.194	0.219	0.623	3e-16
Q9LSQ3	297	Transcription factor bHLH	no	no	0.194	0.228	0.579	3e-15
Q8GY61	335	Transcription factor bHLH	no	no	0.245	0.256	0.488	1e-13

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 230/389 (59%), Gaps = 79/389 (20%)

Query: 1   MDSSTNHNYHQQSNP---GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNS 57
           MDS+ NH Y    NP   GL RF SAP+++L  F D       +K  F+S+RL+SRF+ S
Sbjct: 1   MDSN-NHLY--DPNPTGSGLLRFRSAPSSVLAAFVDD------DKIGFDSDRLLSRFVTS 51

Query: 58  GGDNSNNSSFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQSSA-MDH 101
            G N +  S  +FE KSPVS  N+  S +               GLPPHYPRQS   M+ 
Sbjct: 52  NGVNGDLGS-PKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSKGIMNS 110

Query: 102 NSYDLFLD-QSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDL 160
              D FL   +   K V SNL+RQSSSPAG+F  LS QNGY S + + +Y        + 
Sbjct: 111 VGLDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNY-----EEDEE 165

Query: 161 SPSTKR-LKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSW 219
           SPS    L+   S+ SR PSSLGMLS++ E+  +                  T F Y  W
Sbjct: 166 SPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPE------------------TNFPYSHW 207

Query: 220 NDSSHFTESFTDMKREQ----------GNGELGN---------------STSAEMAAVEK 254
           ND S F ++ + +KRE            NGE GN               ST+++M +V+K
Sbjct: 208 NDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDK 267

Query: 255 FLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDL 314
           +LQ QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DMLDL
Sbjct: 268 YLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDL 327

Query: 315 AVDYIKDLQNQFKTLSDNRAKCKCSKIQK 343
           AVDYIKDLQ Q+K L+DNRA CKC   +K
Sbjct: 328 AVDYIKDLQRQYKILNDNRANCKCMNKEK 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 196/386 (50%), Gaps = 74/386 (19%)

Query: 6   NHNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNS 65
           +H + +  N GL R+ SAP++   +F +S+E      +S E+ER++S F+ +   + N  
Sbjct: 14  DHQHQRPRNSGLIRYQSAPSSYFSSFGESIEEFLDRPTSPETERILSGFLQTTDTSDNVD 73

Query: 66  SFQEF------------EVKS-------PVSYGNSQQ----SCSGLPPHYPRQS----SA 98
           SF               EVK+       PV+   +      S  G     P  S    ++
Sbjct: 74  SFLHHTFNSDGTEKKPPEVKTEDEDAEIPVTATATAMEVVVSGDGEISVNPEVSIGYVAS 133

Query: 99  MDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYAST-KEVGSYGGVN--- 154
           +  N      D  + V    +NL R +SSPAGLF+ +  +  YA+  K +G +GG N   
Sbjct: 134 VSRNKRPREKDDRTPV----NNLARHNSSPAGLFSSIDVETAYAAVMKSMGGFGGSNVMS 189

Query: 155 GSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGD---TQFYS 211
            SN + S  T R K        +P +   +S +SEV+        V+ G       +  S
Sbjct: 190 TSNTEASSLTPRSK-------LLPPTSRAMSPISEVD--------VKPGFSSRLPPRTLS 234

Query: 212 TGFSYGSWNDSSHFTESFTDMKREQGNGELGNSTSAEMAA------------------VE 253
            GF+    N+ S  +   T + R Q  G     T  E +A                  +E
Sbjct: 235 GGFNRSFGNEGS-ASSKLTALARTQSGGLDQYKTKDEDSASRRPPLAHHMSLPKSLSDIE 293

Query: 254 KFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLD 313
           + L   DS+PCKIRAKRGCATHPRSIAERVRRT+ISERMRKLQ+LVPNMD QTNTADMLD
Sbjct: 294 QLLS--DSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLD 351

Query: 314 LAVDYIKDLQNQFKTLSDNRAKCKCS 339
           LAV YIKDLQ Q K L ++RA+C+CS
Sbjct: 352 LAVQYIKDLQEQVKALEESRARCRCS 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 181/356 (50%), Gaps = 43/356 (12%)

Query: 16  GLSRFNSAPTALLVNFTDSLESGGV-NKSSF-----ESERLISRFMNSGGDNSNNSSFQE 69
           GL R+ SAP + L +  D +  GG  N   F      S+  I  F     D+S   S + 
Sbjct: 22  GLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGNFFTGAADSS---SLRS 78

Query: 70  FEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKS---------VNSN 120
                 V+  +  Q   G   +           SY  F + S + KS          + +
Sbjct: 79  DSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQHKSNDIGGGNSSGSYS 138

Query: 121 LVRQSSSPAGLFAKLSA-QNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPS 179
           L RQ SSPA  F  L++ +N ++  +    Y    GSNG    S  RLKSQ+S  +    
Sbjct: 139 LARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHS--RLKSQLSFTNH--- 193

Query: 180 SLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYG---SWNDSSH---FTESFTDMK 233
               L+R++EV ++ P H    +G+G + F +  F      SW+D S    FT +    +
Sbjct: 194 --DSLARINEV-NETPVH----DGSGHS-FSAASFGAATTDSWDDGSGSIGFTVTRPSKR 245

Query: 234 REQGNGELGNSTS----AEMAAVEKFLQF-QDSVPCKIRAKRGCATHPRSIAERVRRTRI 288
            +  +  L +  S      M  ++ F+Q  +DSVPCKIRAKRGCATHPRSIAER RRTRI
Sbjct: 246 SKDMDSGLFSQYSLPSDTSMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRI 305

Query: 289 SERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKP 344
           S +++KLQ+LVPNMDKQT+ +DMLDLAV +IK LQ+Q + L  ++  C C   +KP
Sbjct: 306 SGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEKP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 91/123 (73%), Gaps = 9/123 (7%)

Query: 226 TESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRR 285
           T+  + +K EQ +G +       M  +     F+DSVPC++RAKRGCATHPRSIAERVRR
Sbjct: 146 TQFSSQLKEEQMSGGISGMMDMNMDKI-----FEDSVPCRVRAKRGCATHPRSIAERVRR 200

Query: 286 TRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPV 345
           TRIS+R+R+LQELVPNMDKQTNTADML+ AV+Y+K LQ+Q + L++ + +CKC    KP 
Sbjct: 201 TRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKC----KPK 256

Query: 346 ENQ 348
           E Q
Sbjct: 257 EEQ 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 87/117 (74%), Gaps = 4/117 (3%)

Query: 222 SSHFTESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAE 281
           S  FT   + MK EQ +G++    S+ M+ +      +DSV  ++RAKRGCATHPRSIAE
Sbjct: 144 SPEFT---SQMKGEQSSGQVPTGVSS-MSDMNMENLMEDSVAFRVRAKRGCATHPRSIAE 199

Query: 282 RVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC 338
           RVRRTRIS+R+RKLQELVPNMDKQTNTADML+ AV+Y+K LQ Q + L++ + +C C
Sbjct: 200 RVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTC 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 124/225 (55%), Gaps = 28/225 (12%)

Query: 121 LVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPS- 179
           L R  SSPAG + +    +   +   +G   G  G  G+  PS  RLKS++   S   S 
Sbjct: 82  LFRHRSSPAGFYDQHLPTDPNGTGFSLGRPNGGYGGGGEQGPS--RLKSELRFSSGSSSH 139

Query: 180 -SLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGS-----W-NDSSHFTESFTDM 232
                L R+SEVE+        RNG       S+  S+G+     W N SSH + +    
Sbjct: 140 QEHNSLPRISEVEAAA----AARNG-----VASSSMSFGNNRTNNWDNSSSHISFTIDQP 190

Query: 233 KREQGNGELGN--------STSAEMAAVEKFLQF-QDSVPCKIRAKRGCATHPRSIAERV 283
            +   N +            T+ EMA +E  +   +DSVPC+ RAKRG ATHPRSIAER 
Sbjct: 191 GKRSKNSDFFTLETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERE 250

Query: 284 RRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 328
           RRTRIS +++KLQELVPNMDKQT+ ADMLDLAV++IK LQ+Q + 
Sbjct: 251 RRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 265 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 324
           KIRA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct: 137 KIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQL 195

Query: 325 QFKTLSDNR 333
           Q K LS +R
Sbjct: 196 QVKVLSMSR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 265 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 324
           K+RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 325 QFKTLSDNR 333
           Q K LS +R
Sbjct: 188 QVKVLSMSR 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 265 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 324
           ++RA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  ++Y++ LQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 325 QFKTLSDNR 333
           Q K LS +R
Sbjct: 157 QVKVLSMSR 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 243 NSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNM 302
           N+ S + + V K L+  D +   +RA+RG AT   SIAERVRR +ISERM+ LQ+LVP  
Sbjct: 151 NNFSNDSSKVTKELEKTDYI--HVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGC 208

Query: 303 DKQTNTADMLDLAVDYIKDLQNQFKTLS 330
           DK T  A MLD  ++Y++ LQ Q + LS
Sbjct: 209 DKITGKAGMLDEIINYVQSLQRQIEFLS 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
225441696	405	PREDICTED: transcription factor bHLH130-	0.92	0.795	0.560	4e-98
147789805	394	hypothetical protein VITISV_008845 [Viti	0.92	0.817	0.560	4e-98
255583282	355	DNA binding protein, putative [Ricinus c	0.871	0.859	0.53	2e-96
224120208	355	predicted protein [Populus trichocarpa]	0.851	0.839	0.544	4e-93
356500459	378	PREDICTED: transcription factor bHLH130-	0.911	0.843	0.501	1e-87
449437603	366	PREDICTED: transcription factor bHLH130-	0.928	0.887	0.513	1e-83
297739719	280	unnamed protein product [Vitis vinifera]	0.702	0.878	0.59	2e-81
312282767	363	unnamed protein product [Thellungiella h	0.902	0.870	0.482	4e-78
356537351	384	PREDICTED: transcription factor bHLH130-	0.868	0.791	0.483	1e-76
42569863	359	transcription factor bHLH130 [Arabidopsi	0.885	0.863	0.485	7e-75

>gi|225441696|ref|XP_002277274.1| PREDICTED: transcription factor bHLH130-like [Vitis vinifera]

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 223/398 (56%), Positives = 260/398 (65%), Gaps = 76/398 (19%)

Query: 1   MDSSTNHNYHQQS-----NPGLSRFNSAPTALLVNFTDSLESGGVNKSS-----FESERL 50
           MDS+TN+ +HQQ+     N GL RF SAP++LL NFTDS +  GV+K +     FESER 
Sbjct: 36  MDSNTNY-HHQQNQNQPPNSGLLRFRSAPSSLLANFTDSGD--GVHKGANLCDDFESER- 91

Query: 51  ISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSC-SGLPPHYPRQSS-----AMDHNSY 104
              FM  GG       FQ+           S  SC S LPP YPRQSS     AMD  SY
Sbjct: 92  ---FMPCGG-------FQD-----------SAMSCQSQLPPQYPRQSSSTSSSAMD-GSY 129

Query: 105 DLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPST 164
            +    +   K   S+LVRQSSSPAGLF+ LS QNGYA  + VG++   N  NG++SPST
Sbjct: 130 GVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPST 188

Query: 165 KRLKSQISIPSRIPSSLGMLSRVSEVESD-----GPTHGKVRNGNGDTQFYSTGFSYGSW 219
            RLK Q+S  S +PSSLG+L ++SE+ S+      P   K+ N NGD +FYS GF YGSW
Sbjct: 189 SRLKPQVSFSSGLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSW 248

Query: 220 NDSSHFTESFTDMKREQGNG---------------ELGN------------STSAEMAAV 252
           NDS+HF E+F+ MKR+Q N                E G+             TSAEMAA+
Sbjct: 249 NDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAM 307

Query: 253 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 312
           EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML
Sbjct: 308 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 367

Query: 313 DLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           DLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 368 DLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789805|emb|CAN62935.1| hypothetical protein VITISV_008845 [Vitis vinifera]

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 223/398 (56%), Positives = 260/398 (65%), Gaps = 76/398 (19%)

Query: 1   MDSSTNHNYHQQS-----NPGLSRFNSAPTALLVNFTDSLESGGVNKSS-----FESERL 50
           MDS+TN+ +HQQ+     N GL RF SAP++LL NFTDS +  GV+K +     FESER 
Sbjct: 25  MDSNTNY-HHQQNQNQPPNSGLLRFRSAPSSLLANFTDSGD--GVHKGANLCDDFESER- 80

Query: 51  ISRFMNSGGDNSNNSSFQEFEVKSPVSYGNSQQSC-SGLPPHYPRQSS-----AMDHNSY 104
              FM  GG       FQ+           S  SC S LPP YPRQSS     AMD  SY
Sbjct: 81  ---FMPCGG-------FQD-----------SAMSCQSQLPPQYPRQSSSTSSSAMD-GSY 118

Query: 105 DLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPST 164
            +    +   K   S+LVRQSSSPAGLF+ LS QNGYA  + VG++   N  NG++SPST
Sbjct: 119 GVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSGQNGYAIMRGVGNFRPGNVGNGEISPST 177

Query: 165 KRLKSQISIPSRIPSSLGMLSRVSEVESD-----GPTHGKVRNGNGDTQFYSTGFSYGSW 219
            RLK Q+S  S +PSSLG+L ++SE+ S+      P   K+ N NGD +FYS GF YGSW
Sbjct: 178 SRLKPQVSFSSGLPSSLGLLPQISEIGSECIQASSPNDRKLANSNGDARFYSPGFPYGSW 237

Query: 220 NDSSHFTESFTDMKREQGNG---------------ELGN------------STSAEMAAV 252
           NDS+HF E+F+ MKR+Q N                E G+             TSAEMAA+
Sbjct: 238 NDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFGHRSQILSHHLSLPKTSAEMAAM 296

Query: 253 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 312
           EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML
Sbjct: 297 EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADML 356

Query: 313 DLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           DLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 357 DLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583282|ref|XP_002532405.1| DNA binding protein, putative [Ricinus communis] gi|223527901|gb|EEF29990.1| DNA binding protein, putative [Ricinus communis]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 243/400 (60%), Gaps = 95/400 (23%)

Query: 1   MDSSTNHNYHQQSN----PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMN 56
           MDSS+N N+H Q+N     GL RF SAP++ L NF D+                      
Sbjct: 1   MDSSSNPNFHHQNNQQPSSGLLRFRSAPSSFLANFNDN---------------------- 38

Query: 57  SGGDNSNNS--SFQEFEVKSPV---------SYGNSQQSCSGLPPHYPRQSSAMDH---- 101
             G  SNNS   FQE E KS V         +Y NS QS SGLPPHYPR +++       
Sbjct: 39  --GVTSNNSVMGFQELEDKSAVRVREVGAVVNYANSTQSYSGLPPHYPRHTNSSAATSSS 96

Query: 102 ---------NSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGG 152
                     S  +        K V+SNL RQSSSPAGLF  LS Q GYA+ K +G+Y  
Sbjct: 97  AMDSSFGLIGSMAMGGHHEQEAKRVDSNLARQSSSPAGLFGNLSVQTGYATMKGMGNYAR 156

Query: 153 VNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYST 212
           VNG++G++SP   RLKSQ+S PSRIPSSL MLS++SE+ S+                 S 
Sbjct: 157 VNGTSGEVSP---RLKSQLSFPSRIPSSLSMLSQISEIGSE-----------------SI 196

Query: 213 GFSYGSWNDSSHFTESFTDMKREQG----------NGELGN------------STSAEMA 250
           GF YGSWNDS  F+E+F  MKR+            NGELGN              S +M 
Sbjct: 197 GFPYGSWNDSP-FSENFNGMKRDPDDNGKPFSAAQNGELGNRVHLLSHHLSLPKASVDMV 255

Query: 251 AVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD 310
           A+EKFL FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD
Sbjct: 256 AMEKFLHFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTAD 315

Query: 311 MLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           MLDLAVDYIKDLQ Q+KTLSDNRA CKC   QKPV+NQIV
Sbjct: 316 MLDLAVDYIKDLQKQYKTLSDNRANCKCLSKQKPVQNQIV 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120208|ref|XP_002330991.1| predicted protein [Populus trichocarpa] gi|222872921|gb|EEF10052.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/375 (54%), Positives = 245/375 (65%), Gaps = 77/375 (20%)

Query: 19  RFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSP--- 75
           RF SA ++LL NFTD+                       G DN +  +FQ+FE KS    
Sbjct: 15  RFRSARSSLLANFTDN-----------------------GVDNDSVLNFQDFEDKSAARV 51

Query: 76  ----VSYGNSQQSCSGLPPHYPRQSSA-----MDHNSYDLF----LDQSSRVKSVNSNLV 122
               V+Y    +S  GLPPHYPRQSSA     MD +SY L     +    +V+ V+SN  
Sbjct: 52  REEAVNYSCLPRSYPGLPPHYPRQSSATSSSAMD-SSYGLIGSISIGHHEQVEKVDSNPA 110

Query: 123 RQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLG 182
           RQ+SSPAGLF  L+ QNG      VG+Y G+NG+N + SP   RL+SQ+S  SR+PSSLG
Sbjct: 111 RQNSSPAGLFGNLTVQNG------VGNYSGLNGTNREASP---RLQSQLSFSSRVPSSLG 161

Query: 183 MLSRVSEV-----ESDGPTHGKVRNGNGDTQFYST-GFSYGSWNDSSHFTESFTDMKREQ 236
           +LS++SE+     E+  P  GK+ + + D++FYS+ GF YGSWNDS H +E+F+ MKREQ
Sbjct: 162 LLSQISEIGSESMEAGSPDSGKLSSVSVDSRFYSSHGFPYGSWNDS-HLSENFSSMKREQ 220

Query: 237 ---------GNGELGN------------STSAEMAAVEKFLQFQDSVPCKIRAKRGCATH 275
                     NGELGN             T+ EM A+EKFL FQDSVPCKIRAKRGCATH
Sbjct: 221 ENGNLFSNAQNGELGNRAHVLSHHLSLPKTAMEMVAMEKFLHFQDSVPCKIRAKRGCATH 280

Query: 276 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 335
           PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV YIKDLQ Q+KTLSDNRA 
Sbjct: 281 PRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVVYIKDLQKQYKTLSDNRAN 340

Query: 336 CKCSKIQKPVENQIV 350
           CKC   QKPV+N+IV
Sbjct: 341 CKCLSKQKPVQNRIV 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500459|ref|XP_003519049.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 205/409 (50%), Positives = 244/409 (59%), Gaps = 90/409 (22%)

Query: 1   MDSSTNHN--YHQQSNP--GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMN 56
           MDS  +H+  Y QQ+ P  GL RF SAP++LL N T           SF SE   S    
Sbjct: 1   MDSHIHHHQSYQQQNQPSSGLLRFRSAPSSLLSNLT----------PSFVSEDFGS---- 46

Query: 57  SGGDNSNNSSFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQ------ 95
                   SSF+E E       GN+ + CS               GLPPHYPR       
Sbjct: 47  --------SSFRELE-------GNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHGSSSST 91

Query: 96  -SSAMDHNSYDLF----LDQSSRVKSVNSNLVRQSSSPAGLFAK--LSAQNGYASTKEVG 148
            SSAM+  SY +     LD  +  K   S+L+RQSSSPAGLF+   +S QNG+A+ K VG
Sbjct: 92  SSSAME-GSYGMVSSMGLDHEAPHKGFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVG 150

Query: 149 SYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSE-----VESDGPTHGKVRNG 203
           +YG VNGSNG+LSP   RLK+Q+S   R  SSLGMLS++SE     +E+  P     ++G
Sbjct: 151 NYGAVNGSNGELSPCINRLKNQVSFSPRNASSLGMLSQISELGSEDIEATSPD-DDTKHG 209

Query: 204 NGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQG----------NGELGN---------- 243
             DTQ Y  GF +GSWND+   +E+ + +KR +           NGEL N          
Sbjct: 210 GNDTQHYGPGFPFGSWNDTPQLSENISGLKRGRSGNEKMFSDVQNGELANQVNMLSHHLS 269

Query: 244 --STSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPN 301
              TSAEM  +EK LQF DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVP+
Sbjct: 270 LPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPH 329

Query: 302 MDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           MDKQTNTADMLDLAV+YIKDLQ QFKTLS+ RA CKC  + K   NQI 
Sbjct: 330 MDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMPKADTNQIA 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437603|ref|XP_004136581.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus] gi|449522885|ref|XP_004168456.1| PREDICTED: transcription factor bHLH130-like [Cucumis sativus]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/380 (51%), Positives = 250/380 (65%), Gaps = 55/380 (14%)

Query: 7   HNYHQQSNPGLSRFNSAPTALLVNFTDSLESGGVNK-SSFESERLISRFMN-SGGDNSNN 64
           H   QQ N  L RF SAP++L  +F+  ++S  +N     ESERL+SRF + + G NSN+
Sbjct: 6   HQSFQQPNSALLRFRSAPSSLFADFSHGIDSKRLNPFEGSESERLVSRFGSRADGCNSND 65

Query: 65  SSFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSRVKS-------V 117
           S       +SPV+ GN     SGLPPHYPR SSA++ +S       SS   S       +
Sbjct: 66  S-------ESPVA-GNYS---SGLPPHYPRLSSAVNCSSSSSSSSCSSSSSSMCSSLGFL 114

Query: 118 NSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDL---SPSTKRLKSQISIP 174
            SNLVRQSSSPAG+ ++L+ QNGY      GS+  ++G+N  +   SPS+ RL SQIS  
Sbjct: 115 GSNLVRQSSSPAGVLSQLN-QNGYGG----GSFSRLSGNNNGVEVVSPSSNRLNSQISFS 169

Query: 175 SRIPSSLGMLSRVSEVESDGPTHGKVRNGN-GDTQFYS-TGFSYGSWNDSSHFTESFTDM 232
           S +PSSLGM  ++SE       + K+ N N G+TQF++ +GF + SWN+SS F+E+F  +
Sbjct: 170 SLVPSSLGMFPQISEQVVG---NEKLSNSNNGETQFFTPSGFPFASWNESSQFSETFPGI 226

Query: 233 KRE----------QGNGELGNSTS------------AEMAAVEKFLQFQDSVPCKIRAKR 270
           KR+            NGE+GN               +++A++EK LQ QD+VPC+IRAKR
Sbjct: 227 KRDPDSNKKFSSGHQNGEIGNRVHLLSHHLSLPKNVSDVASIEKLLQLQDAVPCRIRAKR 286

Query: 271 GCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 330
           GCATHPRSIAERVRRTRISERMRKLQ+LVPNMDKQTNTADMLDLAVDYIK+LQ QFKTLS
Sbjct: 287 GCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQKQFKTLS 346

Query: 331 DNRAKCKCSKIQKPVENQIV 350
           DNRA C C  +QKP+ NQI+
Sbjct: 347 DNRANCVCVNMQKPLSNQIM 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739719|emb|CBI29901.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/300 (59%), Positives = 201/300 (67%), Gaps = 54/300 (18%)

Query: 84  SC-SGLPPHYPRQSS-----AMDHNSYDLFLDQSSRVKSVNSNLVRQSSSPAGLFAKLSA 137
           SC S LPP YPRQSS     AMD  SY +    +   K   S+LVRQSSSPAGLF+ LS 
Sbjct: 2   SCQSQLPPQYPRQSSSTSSSAMD-GSYGVVNSNNMEAKQ-GSSLVRQSSSPAGLFSHLSG 59

Query: 138 QNGYASTKEVGSYGGVNGSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTH 197
           QNGYA  + VG++   N  NG++SPST RLK Q+S  S +PSSLG+L ++SE+ SD    
Sbjct: 60  QNGYAIMRGVGNFRPGNVGNGEISPSTSRLKPQVSFSSGLPSSLGLLPQISEIGSD---- 115

Query: 198 GKVRNGNGDTQFYSTGFSYGSWNDSSHFTESFTDMKREQGNG---------------ELG 242
                          GF YGSWNDS+HF E+F+ MKR+Q N                E G
Sbjct: 116 --------------PGFPYGSWNDSAHF-ENFSGMKRDQDNDGKLYSGSNTSGIRNEEFG 160

Query: 243 N------------STSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE 290
           +             TSAEMAA+EKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE
Sbjct: 161 HRSQILSHHLSLPKTSAEMAAMEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISE 220

Query: 291 RMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           RMRKLQELVPNMDKQTNTADMLDLAV+YIKDLQ Q+ TL+DNRA CKC   QKPV NQ V
Sbjct: 221 RMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQYNTLTDNRAHCKCLGKQKPVPNQTV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282767|dbj|BAJ34249.1| unnamed protein product [Thellungiella halophila]

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 189/392 (48%), Positives = 235/392 (59%), Gaps = 76/392 (19%)

Query: 1   MDSSTNHNYHQQSN------PGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRF 54
           MDS++ HN+H   N       GL RF SAP+++L  F D  +SG      F+S+RL+SRF
Sbjct: 1   MDSNS-HNHHYDPNHISSSGSGLLRFRSAPSSVLAAFVDDEKSG------FDSDRLLSRF 53

Query: 55  M--NSGGDNSNNSSFQEFEVKSPVSYGNSQQSCS----------------GLPPHYPRQS 96
              N G D+ +  +  EFE KSPVS  N+  S +                GLPPHYPRQS
Sbjct: 54  ASSNGGNDDLDLPNPSEFEDKSPVSLTNTSVSYAATLPPPPRQTEPSSFLGLPPHYPRQS 113

Query: 97  SAMDHN-SYDLFLDQSSR-VKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVN 154
             M +    D FL  ++   K   SNL+RQSSSPAG+F  LS QNGY S + + +YGG  
Sbjct: 114 KGMMNTIGLDQFLGMNNHHTKPAESNLLRQSSSPAGMFTNLSDQNGYGSMRSLMNYGG-E 172

Query: 155 GSNGDLSPSTKRLKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGF 214
             + D   ++  L+   S+ SR  SSLGMLS++ E+                    +T F
Sbjct: 173 EEDEDRPSNSNGLRRHCSLSSRPLSSLGMLSQIPEI--------------------ATNF 212

Query: 215 SYGSWNDSSHFTESFTDMKRE----------QGNGELGNST-----------SAEMAAVE 253
            Y  WND S F ++ + +KRE            NGE GN             S++MA+V+
Sbjct: 213 QYNHWNDPSSFIDNLSSLKRETEDDAKLFNGAQNGESGNRMQLLSHHLSLPKSSDMASVD 272

Query: 254 KFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLD 313
           KF+Q QDSVPCK+RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DMLD
Sbjct: 273 KFMQLQDSVPCKVRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLD 332

Query: 314 LAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPV 345
           LAVDYIKDLQ Q+K L+DNRA CKC K +KPV
Sbjct: 333 LAVDYIKDLQRQYKILNDNRANCKC-KEKKPV 363

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537351|ref|XP_003537191.1| PREDICTED: transcription factor bHLH130-like [Glycine max]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 190/393 (48%), Positives = 230/393 (58%), Gaps = 89/393 (22%)

Query: 16  GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNSGGDNSNNSSFQEFEVKSP 75
           GL RF SAP++LL N T            F SE   S            SSF+E +    
Sbjct: 23  GLLRFRSAPSSLLSNLT-----------PFVSEDFGS------------SSFRELQ---- 55

Query: 76  VSYGNSQQSCS---------------GLPPHYPRQSSAMD---------HNSYDLF---- 107
              GN+ + CS               GLPPHYPR   +             S+ L     
Sbjct: 56  ---GNNNKGCSKDLSSMNSHKGVYGGGLPPHYPRHRGSSSSAATSSSAMEGSFGLVGSMG 112

Query: 108 LDQSSRVKSVNSNLVRQSSSPAGLFAK--LSAQNGYASTKEVGSYGGVNGSNGDLSPSTK 165
           ++  +    + S+L+R S+SPAGLF+   ++ QNG+A+ K VG+YGGVNGSNG+LSP   
Sbjct: 113 MNHETPQNGLGSSLLRHSTSPAGLFSNNNINFQNGFATMKGVGNYGGVNGSNGELSPCIN 172

Query: 166 RLKSQISIPSRIPSSLGMLSRVSEV-----ESDGPTHGKVRNGNGDTQFYSTGFSYGSWN 220
            LK+Q+S   R  SSLGMLS++SE+     E+  P       GN DTQ Y  GF YGSWN
Sbjct: 173 GLKNQVSFSPRNASSLGMLSQISEIGNEDIEATSPDDDTRHEGN-DTQQYGPGFPYGSWN 231

Query: 221 DSSHFTESFTDMKR-----------EQGNGELGN------------STSAEMAAVEKFLQ 257
           D+   +E+ + +KR           E  NGELGN             TSAEM  ++K LQ
Sbjct: 232 DTPQLSENLSGLKRGRSSNEKMFSDEIQNGELGNQVNMLSHHLSLPKTSAEMITMKKLLQ 291

Query: 258 FQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVD 317
           F DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAV+
Sbjct: 292 FPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVE 351

Query: 318 YIKDLQNQFKTLSDNRAKCKCSKIQKPVENQIV 350
           YIKDLQ QFKTLS+ RAKC+C+ +QK   NQI 
Sbjct: 352 YIKDLQKQFKTLSEKRAKCECTSMQKADTNQIA 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569863|ref|NP_181757.2| transcription factor bHLH130 [Arabidopsis thaliana] gi|75288858|sp|Q66GR3.1|BH130_ARATH RecName: Full=Transcription factor bHLH130; AltName: Full=Basic helix-loop-helix protein 130; Short=AtbHLH130; Short=bHLH 130; AltName: Full=Transcription factor EN 69; AltName: Full=bHLH transcription factor bHLH130 gi|51536448|gb|AAU05462.1| At2g42280 [Arabidopsis thaliana] gi|52421281|gb|AAU45210.1| At2g42280 [Arabidopsis thaliana] gi|110737862|dbj|BAF00869.1| putative bHLH transcription factor [Arabidopsis thaliana] gi|330255005|gb|AEC10099.1| transcription factor bHLH130 [Arabidopsis thaliana]

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 230/389 (59%), Gaps = 79/389 (20%)

Query: 1   MDSSTNHNYHQQSNP---GLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMNS 57
           MDS+ NH Y    NP   GL RF SAP+++L  F D       +K  F+S+RL+SRF+ S
Sbjct: 1   MDSN-NHLY--DPNPTGSGLLRFRSAPSSVLAAFVDD------DKIGFDSDRLLSRFVTS 51

Query: 58  GGDNSNNSSFQEFEVKSPVSYGNSQQSCS---------------GLPPHYPRQSSA-MDH 101
            G N +  S  +FE KSPVS  N+  S +               GLPPHYPRQS   M+ 
Sbjct: 52  NGVNGDLGS-PKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSKGIMNS 110

Query: 102 NSYDLFLD-QSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEVGSYGGVNGSNGDL 160
              D FL   +   K V SNL+RQSSSPAG+F  LS QNGY S + + +Y        + 
Sbjct: 111 VGLDQFLGINNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNY-----EEDEE 165

Query: 161 SPSTKR-LKSQISIPSRIPSSLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYGSW 219
           SPS    L+   S+ SR PSSLGMLS++ E+  +                  T F Y  W
Sbjct: 166 SPSNSNGLRRHCSLSSRPPSSLGMLSQIPEIAPE------------------TNFPYSHW 207

Query: 220 NDSSHFTESFTDMKREQ----------GNGELGN---------------STSAEMAAVEK 254
           ND S F ++ + +KRE            NGE GN               ST+++M +V+K
Sbjct: 208 NDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDK 267

Query: 255 FLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDL 314
           +LQ QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT+DMLDL
Sbjct: 268 YLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDL 327

Query: 315 AVDYIKDLQNQFKTLSDNRAKCKCSKIQK 343
           AVDYIKDLQ Q+K L+DNRA CKC   +K
Sbjct: 328 AVDYIKDLQRQYKILNDNRANCKCMNKEK 356

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.954	0.930	0.435	1.9e-58
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.62	0.572	0.405	1.4e-42
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.271	0.633	0.884	4.6e-41
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.374	0.600	0.598	1.7e-38
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.325	0.440	0.569	8.1e-35
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.931	0.900	0.330	1.5e-33
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.311	0.416	0.594	8.8e-32
TAIR|locus:2126624	310	LRL2 "AT4G30980" [Arabidopsis	0.277	0.312	0.494	9e-15
TAIR|locus:2032990	223	CES "AT1G25330" [Arabidopsis t	0.345	0.542	0.370	7.8e-14
TAIR|locus:2047555	350	LRL1 "AT2G24260" [Arabidopsis	0.194	0.194	0.637	1.1e-13

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 159/365 (43%), Positives = 201/365 (55%)

Query:     1 MDSSTNHNYHQQ-SNPGLSRFNSAPTALLVNFTDSLESGGVNKSSFESERLISRFMXXXX 59
             MDS+ NH Y    +  GL RF SAP+++L  F D  +  G +     S  + S  +    
Sbjct:     1 MDSN-NHLYDPNPTGSGLLRFRSAPSSVLAAFVDD-DKIGFDSDRLLSRFVTSNGVNGDL 58

Query:    60 XXXXXXXFQEFEV-KSPVSYGNS--------QQSCSGLPPHYPRQSSA-MDHNSYDLFLD 109
                         +  + VSY  +          S  GLPPHYPRQS   M+    D FL 
Sbjct:    59 GSPKFEDKSPVSLTNTSVSYAATLPPPPQLEPSSFLGLPPHYPRQSKGIMNSVGLDQFLG 118

Query:   110 -QSSRVKSVNSNLVRQSSSPAGLFAKLSAQNGYASTKEXXXXXXXXXXXXDLSPSTKR-L 167
               +   K V SNL+RQSSSPAG+F  LS QNGY S +             + SPS    L
Sbjct:   119 INNHHTKPVESNLLRQSSSPAGMFTNLSDQNGYGSMRNLMNYEED-----EESPSNSNGL 173

Query:   168 KXXXXXXXXXXXXLGMLSRVSEVESDGPTHGKVRNGNGDTQFYS--TGFSYGSWNDSSHF 225
             +            LGMLS++ E+  +  T+    + N  + F    +     + +D   F
Sbjct:   174 RRHCSLSSRPPSSLGMLSQIPEIAPE--TNFPYSHWNDPSSFIDNLSSLKREAEDDGKLF 231

Query:   226 T-----ESFTDMKREQGNGEL--GNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRS 278
                   ES   M+    +  L   +ST+++M +V+K+LQ QDSVPCKIRAKRGCATHPRS
Sbjct:   232 LGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRS 291

Query:   279 IAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC 338
             IAERVRRTRISERMRKLQELVPNMDKQTNT+DMLDLAVDYIKDLQ Q+K L+DNRA CKC
Sbjct:   292 IAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKC 351

Query:   339 SKIQK 343
                +K
Sbjct:   352 MNKEK 356

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 94/232 (40%), Positives = 125/232 (53%)

Query:   119 SNLVRQSSSPAGLFAKLSAQNGYASTKEXXXX-------XXXXXXXXDLSPSTKRLKXXX 171
             +NL R +SSPAGLF+ +  +  YA+  +                    L+P +K L    
Sbjct:   150 NNLARHNSSPAGLFSSIDVETAYAAVMKSMGGFGGSNVMSTSNTEASSLTPRSKLLPPTS 209

Query:   172 XXXXXXXXX---LGMLSRVSEVESDGPTHGKVRN-GNGDTQFYSTGFSYGSWNDSSHFTE 227
                          G  SR+      G  +    N G+  ++  +   +     D     +
Sbjct:   210 RAMSPISEVDVKPGFSSRLPPRTLSGGFNRSFGNEGSASSKLTALARTQSGGLDQYKTKD 269

Query:   228 SFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTR 287
               +  +R      +  S    ++ +E+ L   DS+PCKIRAKRGCATHPRSIAERVRRT+
Sbjct:   270 EDSASRRPPLAHHM--SLPKSLSDIEQLLS--DSIPCKIRAKRGCATHPRSIAERVRRTK 325

Query:   288 ISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCS 339
             ISERMRKLQ+LVPNMD QTNTADMLDLAV YIKDLQ Q K L ++RA+C+CS
Sbjct:   326 ISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRCS 377

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 84/95 (88%), Positives = 90/95 (94%)

Query:   245 TSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDK 304
             TS+EMAA+EKFLQFQD+VPCKIRAKRGCATHPRSIAERVRRTRISER+RKLQELVPNMDK
Sbjct:    48 TSSEMAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDK 107

Query:   305 QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCS 339
             QTNTADMLDLAVDYIKDLQ Q K L+D+RA C CS
Sbjct:   108 QTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCS 142

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 385 (140.6 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 85/142 (59%), Positives = 101/142 (71%)

Query:   209 FYSTGFSYGSWNDSSHFTESFTDMKR-EQGNGE----LGNSTSA-----EMAAVEKFLQF 258
             F S GFS GSW DS+    S +  K    GN +    L N  S      EMA VEK+LQ 
Sbjct:    66 FSSGGFSIGSWEDSNSIVFSTSTGKSGAHGNDDIIATLSNYESQLVAPREMAGVEKYLQM 125

Query:   259 Q-DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVD 317
             Q D VP ++RAKRGCATHPRSIAER RRTRISE++RKLQ LVPNMDKQT+T+DMLDLAVD
Sbjct:   126 QHDQVPFRVRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVD 185

Query:   318 YIKDLQNQFKTLSDNRAKCKCS 339
             +IK LQ+Q +TL +++ KC CS
Sbjct:   186 HIKGLQSQLQTLKEDKEKCTCS 207

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 70/123 (56%), Positives = 91/123 (73%)

Query:   226 TESFTDMKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRR 285
             T+  + +K EQ +G +       M  +     F+DSVPC++RAKRGCATHPRSIAERVRR
Sbjct:   146 TQFSSQLKEEQMSGGISGMMDMNMDKI-----FEDSVPCRVRAKRGCATHPRSIAERVRR 200

Query:   286 TRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQKPV 345
             TRIS+R+R+LQELVPNMDKQTNTADML+ AV+Y+K LQ+Q + L++ + +CKC    KP 
Sbjct:   201 TRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKC----KPK 256

Query:   346 ENQ 348
             E Q
Sbjct:   257 EEQ 259

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 123/372 (33%), Positives = 177/372 (47%)

Query:     3 SSTNHNYHQQSNPG---LSRFNSAPTALLVNFTDSLESGGV-NKSSF-----ESERLISR 53
             SST+ +  + S PG   L R+ SAP + L +  D +  GG  N   F      S+  I  
Sbjct:     6 SSTSSSSQRSSLPGGGGLIRYGSAPGSFLNSVVDEVIGGGSSNARDFTGYQPSSDNFIGN 65

Query:    54 FMXXXXXXXXXXXFQEFEVKSPVSYGNSQQSCSGLPPHYPRQSSAMDHNSYDLFLDQSSR 113
             F             +       V+  +  Q   G   +           SY  F + S +
Sbjct:    66 FFTGAADSSS---LRSDSTTCGVNNSSDGQKQLGNNNNNNSNKDIFLDRSYGGFNEISQQ 122

Query:   114 VKSV-----NSN----LVRQSSSPAGLFAKLSA-QNGYASTKEXXXXXXXXXXXXDLSPS 163
              KS      NS+    L RQ SSPA  F  L++ +N ++  +                 S
Sbjct:   123 HKSNDIGGGNSSGSYSLARQRSSPADFFTYLASDKNNFSLNQPTSDYSPQGGSNGGRGHS 182

Query:   164 TKRLKXXXXXXXXXXXXLGMLSRVSEVESDGPTHGKVRNGNGDTQFYSTGFSYG---SWN 220
               RLK               L+R++EV ++ P H    +G+G + F +  F      SW+
Sbjct:   183 --RLKSQLSFTNHDS-----LARINEV-NETPVH----DGSGHS-FSAASFGAATTDSWD 229

Query:   221 DSSH---FTESFTDMK-REQGNG---ELGNSTSAEMAAVEKFLQF-QDSVPCKIRAKRGC 272
             D S    FT +    + ++  +G   +    +   M  ++ F+Q  +DSVPCKIRAKRGC
Sbjct:   230 DGSGSIGFTVTRPSKRSKDMDSGLFSQYSLPSDTSMNYMDNFMQLPEDSVPCKIRAKRGC 289

Query:   273 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDN 332
             ATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ +DMLDLAV +IK LQ+Q + L  +
Sbjct:   290 ATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKD 349

Query:   333 RAKCKCSKIQKP 344
             +  C C   +KP
Sbjct:   350 QENCTCGCSEKP 361

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 66/111 (59%), Positives = 85/111 (76%)

Query:   229 FTD-MKREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTR 287
             FT  MK EQ +G++    S+ M+ +      +DSV  ++RAKRGCATHPRSIAERVRRTR
Sbjct:   147 FTSQMKGEQSSGQVPTGVSS-MSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTR 205

Query:   288 ISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC 338
             IS+R+RKLQELVPNMDKQTNTADML+ AV+Y+K LQ Q + L++ + +C C
Sbjct:   206 ISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTC 256

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2126624 LRL2 "AT4G30980" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 9.0e-15, P = 9.0e-15
 Identities = 49/99 (49%), Positives = 63/99 (63%)

Query:   236 QGNG-ELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRK 294
             QG+G +    + A  +A       Q     K+RA+RG AT P SIAER+RR RI+ERM+ 
Sbjct:    99 QGSGGQTQTQSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKS 158

Query:   295 LQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333
             LQELVPN +K T+ A MLD  +DY+K LQ Q K LS +R
Sbjct:   159 LQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVLSMSR 196

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

TAIR|locus:2032990 CES "AT1G25330" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 47/127 (37%), Positives = 73/127 (57%)

Query:   210 YSTGFSYGSWNDSSHFTESFTDMK-REQGNGE-LGNSTSAEMAAVEKFLQFQDSVPCK-- 265
             +S G    + +++SHF  +      R +GN E  G+    + +  E+ +   ++   K  
Sbjct:    42 FSNGALVDANHNNSHFFPNLLHGNTRRKGNKEESGSKRRRKRSEEEEAMNGDETQKPKDV 101

Query:   266 --IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQ 323
               +RAKRG AT   S+AERVRR +I+ER++ LQ+LVP   K    A MLD+ +DY++ LQ
Sbjct:   102 VHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQ 161

Query:   324 NQFKTLS 330
             NQ + LS
Sbjct:   162 NQIEFLS 168

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:2000488 "positive regulation of brassinosteroid biosynthetic process" evidence=IMP

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2047555 LRL1 "AT2G24260" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 44/69 (63%), Positives = 53/69 (76%)

Query:   265 KIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 324
             KIRA+RG AT P SIAER+RR RI+ERM+ LQELVPN +K T+ A MLD  +DY+K LQ 
Sbjct:   137 KIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQL 195

Query:   325 QFKTLSDNR 333
             Q K LS +R
Sbjct:   196 QVKVLSMSR 204

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GR3	BH130_ARATH	No assigned EC number	0.4858	0.8857	0.8635	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-12
smart00353	53	smart00353, HLH, helix loop helix domain	2e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-09

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 276 PRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQ 325
             ++ ER RR RI++   +L+ L+P +   K+ + A++L  AVDYIK LQ  
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQEL 58

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 278 SIAERVRRTRISERMRKLQELVP--NMDKQTNTADMLDLAVDYIKDLQNQ 325
           +  ER RR +I+E   +L+ L+P    +K+ + A++L LA++YIK LQ +
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEE 50

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 278 SIAERVRRTRISERMRKLQELVPN-MDKQTNTADMLDLAVDYIKDLQ 323
           +  ER RR RI++   +L+EL+P   +K+ + A++L LA++YIK LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.33
smart00353	53	HLH helix loop helix domain.	99.31
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.29
KOG1318	411	consensus Helix loop helix transcription factor EB	99.24
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.0
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.6
KOG3960	284	consensus Myogenic helix-loop-helix transcription	98.41
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.29
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.23
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.87
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.49
PLN03217	93	transcription factor ATBS1; Provisional	97.38
KOG0561	373	consensus bHLH transcription factor [Transcription	97.36
KOG3910	632	consensus Helix loop helix transcription factor [T	95.25
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	90.42
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	89.17
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	87.61
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	84.72

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.33  E-value=2.1e-12  Score=94.76  Aligned_cols=52  Identities=38%  Similarity=0.671  Sum_probs=48.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      ..|+..||+||++||+.|..|+.|||.+  ..+++|+.||+.||+||+.|+.++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999  345899999999999999999876

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.31  E-value=4.4e-12  Score=91.67  Aligned_cols=50  Identities=38%  Similarity=0.726  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018789          278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK  327 (350)
Q Consensus       278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~  327 (350)
                      +..||+||++||+.|..|+.|||.+  ..+++|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4679999999999999999999964  2348999999999999999999876

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.29  E-value=4.2e-12  Score=93.25  Aligned_cols=48  Identities=40%  Similarity=0.652  Sum_probs=44.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCC----CCCCCHHHHHHHHHHHHHHHH
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ  323 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~----~K~~dKAsIL~eAI~YIK~LQ  323 (350)
                      .|+..||+||++||+.|..|+.|||.+    ..+++|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999987    345899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.24  E-value=3.8e-12  Score=127.95  Aligned_cols=57  Identities=28%  Similarity=0.578  Sum_probs=50.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH
Q 018789          272 CATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKT  328 (350)
Q Consensus       272 ~at~~HsiaERrRRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~  328 (350)
                      +++..|+++|||||++||+||++|..|||.|..   +++|..||..+++||+.||+..++
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            344689999999999999999999999999943   368999999999999999886663

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.00  E-value=1.3e-10  Score=107.08  Aligned_cols=75  Identities=29%  Similarity=0.367  Sum_probs=63.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhcccccccc
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFKTLSDNR----AKCKCSKIQKPV  345 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~~K------~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~----~~~~c~~~~k~~  345 (350)
                      .|.-+||+||+-|+..+..|++|||.|..      ++.||.||.++|+||.+|.+++.+.+++.    +..+++.+.|..
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~  144 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVN  144 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999998754      26899999999999999998887777665    667888887777


Q ss_pred             cccCC
Q 018789          346 ENQIV  350 (350)
Q Consensus       346 ~~qIv  350 (350)
                      ++|+|
T Consensus       145 YEqM~  149 (229)
T KOG1319|consen  145 YEQMV  149 (229)
T ss_pred             HHHHH
Confidence            76653

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.60  E-value=1.9e-08  Score=95.85  Aligned_cols=51  Identities=31%  Similarity=0.580  Sum_probs=44.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCCCC-------CCCHHHHHHHHHHHHHHHHHHH
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNMDK-------QTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~~K-------~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      .|-+.|||||+|||+-|.+|++|||.+.|       +++||+||+.||+|++.||.+.
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            45689999999999999999999996644       2789999999999999998654

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=98.41  E-value=5.1e-07  Score=86.63  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=60.2

Q ss_pred             CcccccCcCCCCCCCcc---hHHHHHHHHHHHHHHHH-hhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789          262 VPCKIRAKRGCATHPRS---IAERVRRTRISERMRKL-QELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR  333 (350)
Q Consensus       262 v~~k~RakR~~at~~Hs---iaERrRRerINeri~~L-r~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~  333 (350)
                      +.||..+|+.-.++.+.   +-||||=.|+||.|.+| |.-+++.+..+.|+.||..||+||..||.-++++.+..
T Consensus       104 wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  104 WACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            35676666666555554   44999999999999999 67889999999999999999999999999888887654

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.29  E-value=3.6e-07  Score=99.58  Aligned_cols=62  Identities=29%  Similarity=0.472  Sum_probs=56.0

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789          272 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR  333 (350)
Q Consensus       272 ~at~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~  333 (350)
                      .++..|+++|||.|..||+||.+|++|||+...++.|..+|..||+||++|+...+.|+.+.
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~  336 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN  336 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence            44789999999999999999999999999988779999999999999999998777766555

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.23  E-value=1.1e-06  Score=95.06  Aligned_cols=52  Identities=27%  Similarity=0.485  Sum_probs=48.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhcCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018789          274 THPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQNQ  325 (350)
Q Consensus       274 t~~HsiaERrRRerINeri~~Lr~LVP~~~---K~~dKAsIL~eAI~YIK~LQ~q  325 (350)
                      +.+|+.+|||||+++|..|.+|.+|||.|.   .++||-+||.+||++||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            467899999999999999999999999997   5699999999999999999875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.87  E-value=3.9e-05  Score=72.94  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=47.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMDKQT--NTADMLDLAVDYIKDLQNQFKTLSDNR  333 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~K~~--dKAsIL~eAI~YIK~LQ~qv~~Le~~~  333 (350)
                      ..|+.-||+||..|.+.|..|+.+||.....+  ..+.||++|++||+.|+.+..+.....
T Consensus        61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~  121 (232)
T KOG2483|consen   61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDI  121 (232)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHH
Confidence            35788899999999999999999999765432  258999999999999987655544433

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.49  E-value=6.8e-05  Score=69.83  Aligned_cols=57  Identities=26%  Similarity=0.400  Sum_probs=50.3

Q ss_pred             cchHHHHHHHHHHHHHHHHhhcCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789          277 RSIAERVRRTRISERMRKLQELVPN--M-DKQTNTADMLDLAVDYIKDLQNQFKTLSDNR  333 (350)
Q Consensus       277 HsiaERrRRerINeri~~Lr~LVP~--~-~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~  333 (350)
                      ++..||.|=.-+|..|..||.+||.  . +|++.|..+|..||.||++|++.++.-+...
T Consensus       113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            4566999999999999999999995  3 6679999999999999999999888777665

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.38  E-value=0.00047  Score=57.10  Aligned_cols=54  Identities=24%  Similarity=0.479  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018789          285 RTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC  338 (350)
Q Consensus       285 RerINeri~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c  338 (350)
                      -+.|+|-+.+||.|+|....     +...+-||+||+.||+.|+.+|..|.+.+..-..
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~   77 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA   77 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999996422     2578899999999999999999999998855443

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.36  E-value=9.9e-05  Score=72.86  Aligned_cols=51  Identities=29%  Similarity=0.478  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018789          278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTL  329 (350)
Q Consensus       278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~L  329 (350)
                      +-.||||=..||-.|..||.|+|..  .| +.||.||+.+.+||.+|+.+.-+|
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhccccc
Confidence            3459999999999999999999964  45 899999999999999998654443

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.25  E-value=0.014  Score=61.33  Aligned_cols=65  Identities=25%  Similarity=0.363  Sum_probs=48.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 018789          278 SIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQK  343 (350)
Q Consensus       278 siaERrRRerINeri~~Lr~LVP~---~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c~~~~k  343 (350)
                      +..||.|=.-|||.|++|..+.--   .+|--.|-.||-.||.-|-.|++||.+- ..+-|..|+.+-+
T Consensus       531 NARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER-NLNPKaaclkRRe  598 (632)
T KOG3910|consen  531 NARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER-NLNPKAACLKRRE  598 (632)
T ss_pred             hhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc-cCChhhhhhhccc
Confidence            344777778899999999988753   3443468899999999999999999753 2335667776543

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=90.42  E-value=0.14  Score=46.91  Aligned_cols=48  Identities=29%  Similarity=0.464  Sum_probs=42.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCC--CCCCCCHHHHHHHHHHHHHHHHH
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPN--MDKQTNTADMLDLAVDYIKDLQN  324 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~--~~K~~dKAsIL~eAI~YIK~LQ~  324 (350)
                      -|++-||+|-..+|+.|.+||.++|.  .+| +.|.--|..|-.||-+|=.
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence            36788999999999999999999996  455 7888999999999999954

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=89.17  E-value=0.29  Score=53.37  Aligned_cols=42  Identities=26%  Similarity=0.509  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHHHH
Q 018789          280 AERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKD  321 (350)
Q Consensus       280 aERrRRerINeri~~Lr~LVP~~---~K~~dKAsIL~eAI~YIK~  321 (350)
                      |-|.||.|=|+-|.+|..++|-.   .-++|||+|+..||-|+|-
T Consensus        53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            67999999999999999999943   3358999999999999873

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=87.61  E-value=0.51  Score=50.57  Aligned_cols=40  Identities=25%  Similarity=0.531  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCC----CCCCCCHHHHHHHHHHHHHH
Q 018789          281 ERVRRTRISERMRKLQELVPN----MDKQTNTADMLDLAVDYIKD  321 (350)
Q Consensus       281 ERrRRerINeri~~Lr~LVP~----~~K~~dKAsIL~eAI~YIK~  321 (350)
                      -+|-|+|+|--+..|..|+|-    +.| +||-+||..+|-|++.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence            477899999999999999994    456 8999999999999864

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=84.72  E-value=0.93  Score=47.31  Aligned_cols=44  Identities=27%  Similarity=0.405  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHHHHH
Q 018789          279 IAERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKDL  322 (350)
Q Consensus       279 iaERrRRerINeri~~Lr~LVP~~---~K~~dKAsIL~eAI~YIK~L  322 (350)
                      -+-|.||++=|..|.+|.+|+|-.   +.|.||++|+..|-.|||--
T Consensus         7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr   53 (598)
T KOG3559|consen    7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR   53 (598)
T ss_pred             hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence            357899999999999999999954   44689999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-11
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	7e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	2e-06
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	3e-06
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	8e-06
1a0a_A	63	BHLH, protein (phosphate system positive regulator	1e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 15/54 (27%), Positives = 33/54 (61%)

Query: 278 SIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSD 331
           +  E+  R+ I++++ +L++LV   + + N + +L  A+DYI+ LQ+  + L  
Sbjct: 11  NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 267 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNT-----ADMLDLAVDYIKD 321
             +R  A H  +  ER RR +I+  + +L +++P+   ++         +L  A DYI++
Sbjct: 3   EKRR--AQH--NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 322 LQNQ 325
           L+  
Sbjct: 59  LRQS 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 273 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQ-TNTADMLDLAVDYIKDLQNQFKTL 329
           A H  +  ER RR  I +    L++ VP++  +  + A +LD A +YI+ ++ +  T 
Sbjct: 4   AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 267 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQN 324
             KR   TH  ++ ER RR  +      L++ +P ++  ++     +L  A  YI  +Q 
Sbjct: 4   NVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 325 QFKTL 329
           + + L
Sbjct: 60  EEQKL 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 267 RAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQ-TNTADMLDLAVDYIKDLQNQ 325
             KR  A H  +  ER RR  I +    L++ VP++  +  + A +LD A +YI+ ++ +
Sbjct: 10  ADKR--AHH--NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65

Query: 326 FKTL 329
             T 
Sbjct: 66  NHTH 69

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 279 IAERVRRTRISERMRKLQELVPNMDKQTNT------ADMLDLAVDYIKDLQNQFKT 328
            AE+ RR R++  + +L  L+P   KQ N       A  ++ A  YI+ LQ    T
Sbjct: 8   HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.68
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.64
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.54
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.53
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.5
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.46
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.46
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.41
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.35
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.29
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.1
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.0
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.93
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.86
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.71
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.55
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.01

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.68  E-value=4e-17  Score=137.66  Aligned_cols=81  Identities=26%  Similarity=0.399  Sum_probs=53.3

Q ss_pred             CCCcccccCcCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018789          260 DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC  336 (350)
Q Consensus       260 d~v~~k~RakR~~at~~HsiaERrRRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~  336 (350)
                      ...+.+..+++.+++.+|+++||+||++||++|.+|++|||.+.+   +++|++||+.||+||++||.+++.|+++....
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~   93 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ   93 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334567778888889999999999999999999999999999853   47899999999999999999999999876544


Q ss_pred             hccc
Q 018789          337 KCSK  340 (350)
Q Consensus       337 ~c~~  340 (350)
                      ..+.
T Consensus        94 ~~l~   97 (118)
T 4ati_A           94 KKLE   97 (118)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            4333

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.64  E-value=8.7e-17  Score=127.57  Aligned_cols=64  Identities=23%  Similarity=0.402  Sum_probs=58.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018789          274 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  337 (350)
Q Consensus       274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~  337 (350)
                      +..|+++||+||++||++|.+|++|||+++.+++|++||++||+||++||.+++.|+.+.+.-.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999965599999999999999999999999999885544

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.54  E-value=2.8e-15  Score=117.18  Aligned_cols=57  Identities=16%  Similarity=0.375  Sum_probs=51.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018789          274 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS  330 (350)
Q Consensus       274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le  330 (350)
                      ..+|+++||+||++||++|.+|++|||.+..++||++||+.||+||+.||.++.=|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            347899999999999999999999999876559999999999999999999987664

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.53  E-value=2.4e-15  Score=114.52  Aligned_cols=54  Identities=28%  Similarity=0.419  Sum_probs=47.9

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHhhcCCCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q 018789          274 THPRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFK  327 (350)
Q Consensus       274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K------~~dKAsIL~eAI~YIK~LQ~qv~  327 (350)
                      ..+|+++||+||++||..|.+|+.|||.+.+      +++||+||+.||+||+.||++++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4679999999999999999999999997632      36799999999999999998763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.50  E-value=4.2e-15  Score=112.45  Aligned_cols=54  Identities=24%  Similarity=0.442  Sum_probs=49.0

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCHHHHHHHHHHHHHHHHHHH
Q 018789          273 ATHPRSIAERVRRTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       273 at~~HsiaERrRRerINeri~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      ....|+++||+||++||+.|.+|++|||.+..     +++|++||+.||+||+.||+++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            44679999999999999999999999999873     3799999999999999999865

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=4.4e-15  Score=116.34  Aligned_cols=54  Identities=26%  Similarity=0.429  Sum_probs=47.5

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q 018789          271 GCATHPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQN  324 (350)
Q Consensus       271 ~~at~~HsiaERrRRerINeri~~Lr~LVP~~~---K~~dKAsIL~eAI~YIK~LQ~  324 (350)
                      .+++..|+++||+||++||+.|.+|+.|||.|.   .++|||+||+.||+||+.|+.
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            334457999999999999999999999999873   338999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=7e-14  Score=109.90  Aligned_cols=63  Identities=25%  Similarity=0.444  Sum_probs=56.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK  337 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~-K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~  337 (350)
                      ..|+..||+||..||+.|..|+.|||.+. .+++|++||..||+||+.|++++++|+.+++...
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~   77 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999873 2389999999999999999999999999886543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.46  E-value=9.1e-14  Score=109.65  Aligned_cols=60  Identities=27%  Similarity=0.470  Sum_probs=54.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK  335 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~  335 (350)
                      ..|+..||+||++||+.|..|+++||.+  .| ++|++||..||+||+.|+.+++.|+.+++.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~   65 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDD   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999985  55 899999999999999999999999877744

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.41  E-value=2.5e-13  Score=109.22  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=53.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRA  334 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~  334 (350)
                      ..|++.||+||+.||++|..|+++||.+.  .+++|++||.+||+||++|+.+.+.|..+.+
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~   69 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999863  3489999999999999999999988876653

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.35  E-value=4.5e-13  Score=105.58  Aligned_cols=57  Identities=28%  Similarity=0.317  Sum_probs=49.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSD  331 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~---~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~  331 (350)
                      ..|+..||+||..||++|.+|+++||.   .+|..+|+.||..||+||+.||+++++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999995   455347999999999999999999998763

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.29  E-value=5.5e-12  Score=99.99  Aligned_cols=60  Identities=23%  Similarity=0.257  Sum_probs=53.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK  335 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~  335 (350)
                      .|+..||+||..||+.|..|+++||.+.  .+++|++||..||+||+.|+.+.+.|..+.+.
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~   65 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ   65 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999652  23789999999999999999999998877643

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.10  E-value=2.3e-11  Score=94.05  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             cccccCcCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789          263 PCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNM-DKQTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       263 ~~k~RakR~~at~~HsiaERrRRerINeri~~Lr~LVP~~-~K~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      .||++.........|+..||+|+..||+.|..|+++||.. +++++|..||..||+||..|++.+
T Consensus         2 ~ckr~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A            2 ELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4554332222334578889999999999999999999964 345899999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.00  E-value=3.1e-10  Score=108.03  Aligned_cols=54  Identities=15%  Similarity=0.403  Sum_probs=42.6

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 018789          273 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       273 at~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      ++.+|+++||+||++||+.|.+|++|||....++||++||+.||+|||.|+...
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            345789999999999999999999999955445999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.93  E-value=1.2e-09  Score=82.38  Aligned_cols=51  Identities=24%  Similarity=0.401  Sum_probs=46.0

Q ss_pred             cchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018789          277 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK  327 (350)
Q Consensus       277 HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~  327 (350)
                      |+.-||+|+..||+.|..|+.+||..  +++++|..+|..||+||+.|++.++
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            57789999999999999999999975  4569999999999999999998763

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.86  E-value=7.3e-10  Score=106.97  Aligned_cols=54  Identities=28%  Similarity=0.403  Sum_probs=47.3

Q ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHhhcCCC----CCCCCCHHHHHHHHHHHHHHHHHH
Q 018789          271 GCATHPRSIAERVRRTRISERMRKLQELVPN----MDKQTNTADMLDLAVDYIKDLQNQ  325 (350)
Q Consensus       271 ~~at~~HsiaERrRRerINeri~~Lr~LVP~----~~K~~dKAsIL~eAI~YIK~LQ~q  325 (350)
                      +.++.+|+.+||+||++||+.|.+|+.|||.    ..| +||++||+.||+|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            3345689999999999999999999999994    455 99999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.71  E-value=2.3e-08  Score=80.36  Aligned_cols=51  Identities=29%  Similarity=0.524  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018789          284 RRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRA  334 (350)
Q Consensus       284 RRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~  334 (350)
                      -|..||++|.+|.+|||.+..   +++|++||..||+||+.||++++.+.++..
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~   56 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   56 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999999997632   379999999999999999998887776653

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.55  E-value=3e-08  Score=77.06  Aligned_cols=47  Identities=28%  Similarity=0.408  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 018789          278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQN  324 (350)
Q Consensus       278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~  324 (350)
                      +.-||+|...||+.|..||++||..  +++++|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            3459999999999999999999975  4468999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.01  E-value=1.1e-05  Score=66.56  Aligned_cols=51  Identities=27%  Similarity=0.438  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018789          281 ERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSD  331 (350)
Q Consensus       281 ERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~  331 (350)
                      ||.|=..||+.|..||.+||..  +|++.|..+|..||+||+.|++.++.-..
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~   85 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5778888999999999999965  55699999999999999999988765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-14
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	9e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	9e-11
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	8e-10
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 285 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCS 339
           R+ I++++ +L++LV   D + + + +L  A+DYIK LQ     L       K +
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLA 55

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 17/69 (24%), Positives = 36/69 (52%)

Query: 269 KRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 328
            RG      +  E+  R+ I++++ +L++LV   + + N + +L  A+DYI+ LQ+  + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 329 LSDNRAKCK 337
           L       +
Sbjct: 62  LKQENLSLR 70

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 9e-12
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 277 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRA 334
            ++ ER RR  +      L++ +P +  +++     +L  A  YI  +Q + + L     
Sbjct: 10  HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69

Query: 335 KCK 337
             +
Sbjct: 70  LLR 72

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 9e-11
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 277 RSIAERVRRTRISERMRKLQELV-PNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 335
            +  ER RR  I +    L++ V     ++ + A +LD A +YI+ ++ +  T   +   
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65

Query: 336 CK 337
            K
Sbjct: 66  LK 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 278 SIAERVRRTRISERMRKLQELVPNMDKQTN------TADMLDLAVDYIKDLQNQFKT 328
             AE+ RR R++  + +L  L+P   KQ N       A  ++ A  YI+ LQ    T
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 8e-10
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 335
           +  E+ RR  +   + KL+ LVP      +  T  +L  A  +IK L++  +       +
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65

Query: 336 CK 337
            +
Sbjct: 66  LQ 67

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 278 SIAERVRRTRISERMRKLQELVP-NMDKQTNTADMLDLAVDYIKDLQNQ 325
           ++ ER R ++++E    L+     N +++    ++L  A+ YI+ LQ  
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQAL 65

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 278 SIAERVRRTRISERMRKLQELVPNM-----DKQTNTADMLDLAVDYIKDLQNQ 325
           +  ER RR +I+  + +L +++P+          +   +L  A DYI++L+  
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.47
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.47
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.4
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.34

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=117.17  Aligned_cols=65  Identities=23%  Similarity=0.400  Sum_probs=59.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCS  339 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c~  339 (350)
                      ..|+.+||+||++||+.|..|++|||.+..+++|++||..||+||+.|+.+++.|..+.+...+.
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~~   72 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA   72 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999987669999999999999999999999999888655443

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=4.2e-15  Score=112.42  Aligned_cols=53  Identities=21%  Similarity=0.396  Sum_probs=48.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFK  327 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~-K~~dKAsIL~eAI~YIK~LQ~qv~  327 (350)
                      ..|++.||+||++||+.|..|++|||.+. ++++|++||+.||+||++||++++
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999999874 348999999999999999998764

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.5e-14  Score=107.48  Aligned_cols=52  Identities=27%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNM------DKQTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~------~K~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      ..|+++||+||++||+.|..|++|||.+      ..+++|+.||+.||+||+.||+++
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999952      334899999999999999999865

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.2e-14  Score=108.07  Aligned_cols=61  Identities=23%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC  336 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~  336 (350)
                      .|+.+||+||++||+.|.+|++|||.+.  .+++|++||+.||+||+.|+.+++.|..+++..
T Consensus         4 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L   66 (79)
T d1nlwa_           4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999764  238999999999999999999999998877543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-14  Score=106.93  Aligned_cols=56  Identities=29%  Similarity=0.436  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 018789          285 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK  340 (350)
Q Consensus       285 RerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c~~  340 (350)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||++++.|+.++....|..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999986699999999999999999999999999987766543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=107.18  Aligned_cols=61  Identities=25%  Similarity=0.450  Sum_probs=54.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK  335 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~-K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~  335 (350)
                      ..|+.+||+||++||+.|..|++|||.+. ++++|++||..||+||+.|+.++..|..+.+.
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   65 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999753 34899999999999999999999998877643

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=107.34  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=53.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018789          276 PRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRA  334 (350)
Q Consensus       276 ~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~  334 (350)
                      .|+.+||+||++||+.|..|++|||.+.  ++++|++||..||+||+.|+++++.|..+.+
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   69 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999753  2389999999999999999999999987664

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.8e-13  Score=102.19  Aligned_cols=52  Identities=25%  Similarity=0.473  Sum_probs=46.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhhcCCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
Q 018789          275 HPRSIAERVRRTRISERMRKLQELVPNMD-----KQTNTADMLDLAVDYIKDLQNQF  326 (350)
Q Consensus       275 ~~HsiaERrRRerINeri~~Lr~LVP~~~-----K~~dKAsIL~eAI~YIK~LQ~qv  326 (350)
                      ..|+++||+||++||+.|.+|++|||.+.     .+++|++||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999764     13899999999999999998754