Citrus Sinensis ID: 018864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVKQN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHccEEEEcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccEEEEEEEEcccccccEEccccccccccccccccccccccEEEEEEcccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHEEEHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccEEEEEcccccccccccccccccHHHHHHEEHHHHHHHHHHHHHHccccccccccccccHHHcccccccccccccccccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MMTTLSQTVSVFSNKAInlksvasfntiktlrfnppssprslsrnFCRVQATILQDEEEKVVVeessplknfpnddeppetgsaSALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISprmayhfsecveshafETYDKFIKAQGEklkkmpapavaikyytggdlylfdefqtarlpnsrrpkienLYDVFLNIRDDEAEHCKTMkacqthgnlrsphsyseddfgcedesgcivaQADCEGIVDCIKKAVavstprvkqn
Flexible Loop (DISEMBL)
MMTTLSQTVSVFSNKAInlksvasfntiktlrfnppssprslsrNFCRVQATilqdeeekvvveessplknfpnddeppeTGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGeklkkmpaPAVAIKYYTGGDLYLFDEFQtarlpnsrrpkieNLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAvavstprvkqn
Low Complexity Region (SEG)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTlrfnppssprslsrnfCRVQATILQDeeekvvveeSSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVKQN
Disordered region (IsUnstruct)
**********VFSNKAINLKSVASFNTIKTLR*************FCRVQATIL********************************LEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQT*************DFGCEDESGCIVAQADCEGIVDCIKKAVAV********
Disordered Region (DISOPRED)
********************************************************************LKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPH***********************GIVDC***************
Disordered Region (DISEMBL)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEE**************************SALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVA*********
Disordered Region (DISPRO)
****LSQTVSVFSNKAINLKSVASFNTIK************LSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFG**DESGCIVAQADCEGIVDCIKKAV**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTTLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVKQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q56X52	351	Ubiquinol oxidase 4, chlo	yes	no	0.845	0.840	0.750	1e-136
Q41266	333	Ubiquinol oxidase 2, mito	no	no	0.455	0.477	0.277	1e-12
O22049	353	Ubiquinol oxidase 2, mito	no	no	0.455	0.450	0.3	2e-12
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	0.455	0.5	0.283	2e-12
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.446	0.525	0.295	2e-11
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.446	0.441	0.295	5e-11
O03376	326	Alternative oxidase 3, mi	no	no	0.446	0.478	0.306	7e-11
Q8LEE7	318	Ubiquinol oxidase 3, mito	no	no	0.421	0.462	0.291	1e-10
Q39219	354	Ubiquinol oxidase 1a, mit	no	no	0.455	0.449	0.266	4e-10
Q8NKE2	401	Alternative oxidase, mito	N/A	no	0.426	0.371	0.306	6e-10

>sp|Q56X52|AOX4_ARATH Ubiquinol oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2

 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/301 (75%), Positives = 258/301 (85%), Gaps = 6/301 (1%)

Query: 45  NFCRVQATILQDEEEKVVVEES----SPLKNFPNDDEPPETGSASALEKWVIKFEQSVNI 100
           N  RVQATILQD+EEKVVVEES    +     P ++    + S SA E W+IK EQ VN+
Sbjct: 51  NNHRVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNV 110

Query: 101 LLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFA 160
            LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFA
Sbjct: 111 FLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFA 170

Query: 161 ESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHA 220
           ESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA
Sbjct: 171 ESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHA 230

Query: 221 FETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
           +ETYDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP IENLYDVF+
Sbjct: 231 YETYDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFV 290

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIV-AQADCEGIVDCIKKAV 339
           NIRDDEAEHCKTM+ACQT G+LRSPHS  EDD   E+ESGC+V  +A CEGIVDC+KK++
Sbjct: 291 NIRDDEAEHCKTMRACQTLGSLRSPHSILEDD-DTEEESGCVVPEEAHCEGIVDCLKKSI 349

Query: 340 A 340
            
Sbjct: 350 T 350

Acts early in chloroplast biogenesis as a component of a redox chain responsible for phytoene desaturation. Involved in the differentiation of multiple plastid types, including chloroplasts, amyloplasts, and etioplasts. Might participate in the chloroplast respiratory chain.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q41266|AOX2_SOYBN Ubiquinol oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     + +   ++K    E+ NE  HL+
Sbjct: 147 DLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLM 206

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +Y++SP++A+     +E  A  +Y +++K 
Sbjct: 207 TMVELVKPK-WYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLKD 265

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            +   ++ +PAPA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 266 LESGAIENVPAPAIAIDYW-------------------RLPKDARLKDVITVIRADEAHH 306

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22049|AOX2_ARATH Ubiquinol oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 226

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL    W ++R L   +   ++      YVISPR+A+     +E  A  +Y +F+K 
Sbjct: 227 TMMELVKPKW-YERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKD 285

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
               K++ + APA+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 286 IDNGKIENVAAPAIAIDYW-------------------RLPKDATLKDVVTVIRADEAHH 326

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH+       +   ++K    E+ NE  HL+
Sbjct: 132 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLM 191

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK- 229
            M EL     W++R L   +   ++     +YV+SP++A+     +E  A  +Y +++K 
Sbjct: 192 TMVELVQPK-WYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKD 250

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
                +K +PAPA+AI Y+                   R PK   L DV   +R DEA H
Sbjct: 251 IDSGAIKNIPAPAIAIDYW-------------------RLPKDATLKDVITVVRADEAHH 291

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 111 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 170

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+     W++R   F  Q + +  YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 171 TFMEVAKPN-WYERALVFAVQGVFINAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 226

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y+                   R PK   L DV L +R DE
Sbjct: 227 LKELDKGNIENVPAPAIAIDYW-------------------RLPKDSTLRDVVLVVRADE 267

Query: 287 AEH 289
           A H
Sbjct: 268 AHH 270

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLM 226

Query: 171 IMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
              E+    W ++R   F  Q +    YFVT   Y++SP++A+     +E  A  +Y +F
Sbjct: 227 TFMEVAKPNW-YERALVFAVQGVFFNAYFVT---YLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 228 IKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           +K   +  ++ +PAPA+AI Y                    R PK   L DV L +R DE
Sbjct: 283 LKELDKGNIENVPAPAIAIDY-------------------CRLPKDSTLLDVVLVVRADE 323

Query: 287 AEH 289
           A H
Sbjct: 324 AHH 326

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O03376|AOX3_SOYBN Alternative oxidase 3, mitochondrial OS=Glycine max GN=AOX3 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  +++R      +LETIA VP      +LH+     +     ++K    E+ NE  HL+
Sbjct: 140 DIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLM 199

Query: 171 IMEELGGNAWWFDRFL---AQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKF 227
            M EL   + W +R L   AQ +    +FV    Y++SP+ A+ F   +E  A  +Y + 
Sbjct: 200 TMVELVKPS-WHERLLIFTAQGVFFNAFFV---FYLLSPKAAHRFVGYLEEEAVISYTQH 255

Query: 228 IKA-QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDE 286
           + A +  K++ +PAPA+AI Y+                   R PK   L DV   IR DE
Sbjct: 256 LNAIESGKVENVPAPAIAIDYW-------------------RLPKDATLKDVVTVIRADE 296

Query: 287 AEH 289
           A H
Sbjct: 297 AHH 299

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWF 182
            +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL    W +
Sbjct: 144 MLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKW-Y 202

Query: 183 DRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAP 241
           +R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAP
Sbjct: 203 ERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAP 262

Query: 242 AVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
           A+AI Y+                   R PK   L DV   IR DEA H
Sbjct: 263 AIAIDYW-------------------RLPKDATLRDVVYVIRADEAHH 291

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
           D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct: 168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query: 171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
              E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct: 228 TFMEVAKPK-WYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query: 231 QGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
             +  ++ +PAPA+AI Y+                   R P    L DV + +R DEA H
Sbjct: 287 LDKGNIENVPAPAIAIDYW-------------------RLPADATLRDVVMVVRADEAHH 327

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8NKE2|AOX_CRYNH Alternative oxidase, mitochondrial OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=AOX1 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 121 RFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAW 180
           R  +LE+IA VP     ++ H+       R   ++     E+ NE  HLL    +     
Sbjct: 186 RIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIA-QPG 244

Query: 181 WFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKL----K 236
            F R L       +Y      Y+ISPR+A+ F   +E  A  TY   I      L    K
Sbjct: 245 IFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWK 304

Query: 237 KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            MPAPA+AI Y+              RLP S      +L DV   +R DEA H
Sbjct: 305 DMPAPAIAIDYW--------------RLPAS-----SSLLDVIRAVRADEATH 338

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Cryptococcus neoformans var. grubii (taxid: 178876)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
255554747	356	Alternative oxidase 4, chloroplast precu	0.945	0.926	0.702	1e-142
449455371	355	PREDICTED: ubiquinol oxidase 4, chloropl	0.934	0.918	0.720	1e-142
224116034	358	predicted protein [Populus trichocarpa]	0.888	0.865	0.766	1e-141
428161219	365	plastid terminal oxidase [Daucus carota]	0.936	0.895	0.702	1e-137
350536613	366	plastid quinol oxidase [Solanum lycopers	0.919	0.877	0.723	1e-137
357447777	342	Alternative oxidase [Medicago truncatula	0.942	0.961	0.677	1e-136
356555706	332	PREDICTED: alternative oxidase 4, chloro	0.871	0.915	0.726	1e-135
297799790	351	hypothetical protein ARALYDRAFT_492640 [	0.891	0.886	0.738	1e-135
388507484	342	unknown [Medicago truncatula]	0.942	0.961	0.675	1e-135
224118168	362	predicted protein [Populus trichocarpa]	0.902	0.870	0.717	1e-135

>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis] gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/346 (70%), Positives = 287/346 (82%), Gaps = 16/346 (4%)

Query: 4   TLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPSSPR-SLSRNFCRVQATILQDEEEKVV 62
           ++S T +       N K+++SF++   L F   SSPR   +   CRVQAT+L++ EEKVV
Sbjct: 5   SISPTTTAAVYAISNSKALSSFSSRNGLSFISLSSPRFKATGKLCRVQATVLRENEEKVV 64

Query: 63  VEESSPLKNFPNDDE---------PPETGSASALEKWVIKFEQSVNILLTESVIMVLDAL 113
           ++E+   K+F +DD+         PP+T    +LE+WVIK EQSVN+ LT+SVI +LDA 
Sbjct: 65  IDETFQPKSFTDDDDGKGGRTGGDPPDT----SLERWVIKLEQSVNVFLTDSVIKILDAF 120

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           Y DRDYARFFVLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME
Sbjct: 121 YHDRDYARFFVLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 180

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGGN+WWFDRFLAQHIA+ YY +TVFMY +SPRMAYHFSECVESHA+ TYDKFIKAQGE
Sbjct: 181 ELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYDKFIKAQGE 240

Query: 234 KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM 293
           +LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SRRPKI+NLYDVFLNIRDDEAEHCKTM
Sbjct: 241 ELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNIRDDEAEHCKTM 300

Query: 294 KACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAV 339
           +ACQTHGNLRSPHS+ E+D   ED SGCI+ +ADCEGIVDC+KK++
Sbjct: 301 RACQTHGNLRSPHSHVENDI--EDVSGCILPEADCEGIVDCMKKSL 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like [Cucumis sativus] gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like [Cucumis sativus]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/343 (72%), Positives = 283/343 (82%), Gaps = 17/343 (4%)

Query: 15  KAINLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPN 74
           K IN K++ASF    +    P      +SR  CRV AT+L+++EEKVV+EES P K  P 
Sbjct: 21  KPINTKNLASFRIPTSFSARP-----LISRKSCRVMATVLKEDEEKVVLEESFPPKASPI 75

Query: 75  DD------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETI 128
            D      + PE+ S++  +KW++K EQSVN+LLT+SVI +LDA Y DR YARFFVLETI
Sbjct: 76  QDGEGGSGQGPESSSSNGFDKWIVKLEQSVNVLLTDSVIKILDAFYHDRHYARFFVLETI 135

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           ARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGN WWFDRFLAQ
Sbjct: 136 ARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNDWWFDRFLAQ 195

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYY 248
           HIAVAYYF+TVFMY+ISPRMAYHFSECVESHAF TYDKF+KA+GE+LKK PAP VA+KYY
Sbjct: 196 HIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYDKFLKAEGEELKKQPAPEVAVKYY 255

Query: 249 TGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSY 308
           T GDLYLFDEFQT+R P SRRPKIE+LYDVF+NIRDDEAEHCKTM+ACQ+HGNLRSPHSY
Sbjct: 256 TEGDLYLFDEFQTSRAPKSRRPKIESLYDVFMNIRDDEAEHCKTMRACQSHGNLRSPHSY 315

Query: 309 SEDDFGC--EDESGCIVAQADCEGIVDCIKKAVAVSTPRVKQN 349
           SE    C  EDE  C +A+ADCEGIVDCIKK++  S+P VKQ 
Sbjct: 316 SE---SCPEEDEPLCNLAEADCEGIVDCIKKSI-TSSPPVKQK 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa] gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/321 (76%), Positives = 270/321 (84%), Gaps = 11/321 (3%)

Query: 34  NPPSSPRSLSRNFCRVQATIL-QDEEEKVVVEESSPLKNFPNDDEP----PETGSASALE 88
           N  S P   SR  CRVQATIL +DEE+KVVVEES   K F +  EP    P++ S   LE
Sbjct: 43  NRTSHPFLPSRKLCRVQATILREDEEKKVVVEESFQPKTFTH--EPVRGSPQSSSPGGLE 100

Query: 89  KWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGW 148
            W IK EQSVN+ LT+SVI +LD LY DRDYARFFVLETIARVPYFAFISVLHMYESFGW
Sbjct: 101 TWAIKLEQSVNVFLTDSVIKILDTLYHDRDYARFFVLETIARVPYFAFISVLHMYESFGW 160

Query: 149 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRM 208
           WRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDR LAQ IA +YYF+TV MY +SPRM
Sbjct: 161 WRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRM 220

Query: 209 AYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSR 268
           AYHFSECVESHAF TYDKFIKAQG+ LKK+PAP VA+KYYT GDLYLFDEFQT+R P+SR
Sbjct: 221 AYHFSECVESHAFATYDKFIKAQGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSR 280

Query: 269 RPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQADC 328
           RPKIENLYDVFLN+RDDEAEHCKTMKACQTHGNLRSPHSY ED F  ED++GC + QADC
Sbjct: 281 RPKIENLYDVFLNVRDDEAEHCKTMKACQTHGNLRSPHSYPEDAF--EDDTGCDLPQADC 338

Query: 329 EGIVDCIKKAVAVSTPRVKQN 349
           EGIVDCIKK  +V++P  KQN
Sbjct: 339 EGIVDCIKK--SVTSPPSKQN 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 275/343 (80%), Gaps = 16/343 (4%)

Query: 18  NLKSVASFNTIKTLRFNP--------PSSPRSLSRNFCRVQATILQDEEEKVVVEESSPL 69
           N+ +  S  +  +LRFNP         SS  S SR   +VQA ILQ+ EEKVVVE+S   
Sbjct: 24  NISNNFSSFSCNSLRFNPLVLPQSCSASSHPSFSRKLFKVQARILQENEEKVVVEDSFQP 83

Query: 70  KNFP------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFF 123
           K+ P      +D EPP+  S+S +E+WVIK EQS+NILLT+SVI +LD LY DRDYARFF
Sbjct: 84  KSSPEVDGSGSDREPPDGSSSSGIERWVIKLEQSINILLTDSVIKILDTLYHDRDYARFF 143

Query: 124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
           VLETIARVPYFAF+SVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD
Sbjct: 144 VLETIARVPYFAFMSVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 203

Query: 184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAV 243
           RFL+QHIAV YYF+  FMY++SPRMAYHFSECVE HAFETYDKFI A+GE LKK+PA  V
Sbjct: 204 RFLSQHIAVFYYFMAAFMYLLSPRMAYHFSECVEHHAFETYDKFINAKGEDLKKLPASKV 263

Query: 244 AIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLR 303
           AIKYYT GD+YLFDEFQT+R PN+RRP I+NLYDVF+NIRDDEAEHCKTMKACQT GNLR
Sbjct: 264 AIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFVNIRDDEAEHCKTMKACQTPGNLR 323

Query: 304 SPHSYSEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRV 346
           SPHS  ++ F  ED++GCI+    CEGIVDCIKK+V   T  V
Sbjct: 324 SPHSGFDNAF--EDDAGCILPDTSCEGIVDCIKKSVTRDTSSV 364

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum] gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum] gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum] gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum] gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/329 (72%), Positives = 280/329 (85%), Gaps = 8/329 (2%)

Query: 18  NLKSVASFNTIKTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPND-- 75
           N ++   FN++  +R +  +S  S+SR  CRV+AT+LQ+ EE+VVVE+S   K+FP++  
Sbjct: 33  NSQNPCRFNSVFPIRKSDGASRCSVSRKSCRVRATLLQENEEEVVVEKSFAPKSFPDNVG 92

Query: 76  ----DEPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARV 131
                +PP+  S++ LEKWVIK EQSVNILLT+SVI +LD LY +R+YARFFVLETIARV
Sbjct: 93  GGSNGKPPDDSSSNGLEKWVIKLEQSVNILLTDSVIKILDTLYHNRNYARFFVLETIARV 152

Query: 132 PYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 191
           PYFAFISVLHMYESFGWWRRADY+KVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA
Sbjct: 153 PYFAFISVLHMYESFGWWRRADYMKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA 212

Query: 192 VAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGG 251
           + YYF+TV MY +SPRMAYHFSECVESHA+ETYDKFIK QGE+LK +PAP +A+ YYTGG
Sbjct: 213 IFYYFMTVLMYALSPRMAYHFSECVESHAYETYDKFIKDQGEELKNLPAPKIAVDYYTGG 272

Query: 252 DLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSED 311
           DLYLFDEFQT+R PN+RRPKI+NLYDVF+NIRDDEAEHCKTMKACQTHG+LRSPH+   D
Sbjct: 273 DLYLFDEFQTSREPNTRRPKIDNLYDVFMNIRDDEAEHCKTMKACQTHGSLRSPHTDPCD 332

Query: 312 DFGCEDESGCIVAQADCEGIVDCIKKAVA 340
           D   ED++GC V QADC GIVDCIKK+V 
Sbjct: 333 D--SEDDTGCSVPQADCIGIVDCIKKSVT 359

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula] gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula] gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/360 (67%), Positives = 285/360 (79%), Gaps = 31/360 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            QGE+LKKMPAP VA+ YYTGGDLYLFDEFQT+R+PN+RRP I+NLYDVFLNIRDDEAEH
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287

Query: 290 CKTMKACQTHGNLRSPHSY--SEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVK 347
           CKTM+ACQT+GNLRSPHSY  +EDD    DES C + +A CEGIVDCIKK+V  +  +VK
Sbjct: 288 CKTMRACQTYGNLRSPHSYADAEDD----DESVCTI-EAGCEGIVDCIKKSVTSNPAKVK 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555706|ref|XP_003546171.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like [Glycine max]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/322 (72%), Positives = 265/322 (82%), Gaps = 18/322 (5%)

Query: 39  PRSLSRNFCRV---------QATILQDEEEKVVVEESSPLKNFPNDDEPPETG----SAS 85
           P+ LS ++ R+         ++++LQD E+KV+V +S P K  P       TG    + S
Sbjct: 16  PKPLSSSYSRIHTAPQLFRARSSLLQDNEKKVIVHDSFPSKTSPLHTADKSTGGNSINTS 75

Query: 86  ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYES 145
           A EK +IK EQSVNI LT+SVI +LD LY DR YARFFVLETIARVPYFAF+SVLHMYES
Sbjct: 76  AFEKRIIKVEQSVNIFLTDSVIKILDTLYHDRHYARFFVLETIARVPYFAFMSVLHMYES 135

Query: 146 FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVIS 205
           FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIA+ YY +TV MY +S
Sbjct: 136 FGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVS 195

Query: 206 PRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLP 265
           PRMAYHFSECVESHAFETYDKFIK QG++LKKMPAP VA+ YYTG DLYLFDEFQT+R+P
Sbjct: 196 PRMAYHFSECVESHAFETYDKFIKVQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVP 255

Query: 266 NSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQ 325
           NSRRPKIENLYDVF+NIRDDEAEHCKTMKACQTHGNLRSPHSY+EDD    D S C + +
Sbjct: 256 NSRRPKIENLYDVFVNIRDDEAEHCKTMKACQTHGNLRSPHSYAEDD----DSSVCAL-E 310

Query: 326 ADCEGIVDCIKKAVAVSTPRVK 347
           ADCEGIVDCIKK+VA +  +VK
Sbjct: 311 ADCEGIVDCIKKSVASNPAKVK 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp. lyrata] gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp. lyrata]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/317 (73%), Positives = 264/317 (83%), Gaps = 6/317 (1%)

Query: 29  KTLRFNPPSSPRSLSRNFCRVQATILQDEEEKVVVEESSPLKNFPNDD--EPPETGSAS- 85
           + L   P SS R L RN  RVQATILQD+EEKVVVEES   + F   +  E P   S+S 
Sbjct: 35  RLLHHRPLSSRRLLFRNIDRVQATILQDDEEKVVVEESFKAETFTGKEPLEEPNMNSSSS 94

Query: 86  -ALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYE 144
            A E W+IK EQ VN+ LT+SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE
Sbjct: 95  SAFESWIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYE 154

Query: 145 SFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVI 204
           +FGWWRRADYLKVHFAESWNEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++
Sbjct: 155 TFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYIL 214

Query: 205 SPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARL 264
           SPRMAYHFSECVESHA+ETYDKF+K  GE+LK MPAP +A+KYYTG DLYLFDEFQT+R 
Sbjct: 215 SPRMAYHFSECVESHAYETYDKFLKTSGEELKNMPAPDIAVKYYTGSDLYLFDEFQTSRA 274

Query: 265 PNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVA 324
           PN+RRP IENLYDVF+NIRDDEAEHCKTM+ACQT G+LRSPHS  ED  G E ESGC+V 
Sbjct: 275 PNTRRPVIENLYDVFVNIRDDEAEHCKTMRACQTLGSLRSPHSILEDGDG-EGESGCVVP 333

Query: 325 Q-ADCEGIVDCIKKAVA 340
           + A CEGIVDCIKK++ 
Sbjct: 334 EAAHCEGIVDCIKKSIT 350

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/360 (67%), Positives = 285/360 (79%), Gaps = 31/360 (8%)

Query: 1   MMTTLSQTVSVFSNKAINLKSVASFNTI--KTLRFNPPSSPRSLSRNFCRVQATILQDEE 58
           M +T   + S+F    +N K  +S N++  + L F PP           R+++++LQD+E
Sbjct: 1   MASTAMFSSSLFPITPLN-KLSSSRNSLIFRPLSFRPP---------LFRIRSSLLQDKE 50

Query: 59  EKVVVEESSPLKNFP---------NDDEPPETGSASALEKWVIKFEQSVNILLTESVIMV 109
           +KV+ + + P K  P         NDD+   T S SA EK VIK EQSVNI LT+SVI +
Sbjct: 51  DKVITQNTFPSKTSPLDSVTENSTNDDD---TSSTSAWEKGVIKVEQSVNIFLTDSVIKI 107

Query: 110 LDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHL 169
           LDALYRDR+YARFFVLETIARVPYFAF+S+LHMYESFGWWRRADYLKVHFAESWNEMHHL
Sbjct: 108 LDALYRDRNYARFFVLETIARVPYFAFMSILHMYESFGWWRRADYLKVHFAESWNEMHHL 167

Query: 170 LIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK 229
           LIMEELGGNAWWFDRFLAQHIA+ YYF+T  MY+ISPRMAYHFSECVESHAFETYDKFIK
Sbjct: 168 LIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYDKFIK 227

Query: 230 AQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
            QGE+LKKMPAP VA+ YYTGGDLYLFDEF+T+R+PN+RRP I+NLYDVFLNIRDDEAEH
Sbjct: 228 EQGEELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDVFLNIRDDEAEH 287

Query: 290 CKTMKACQTHGNLRSPHSY--SEDDFGCEDESGCIVAQADCEGIVDCIKKAVAVSTPRVK 347
           CKTM+ACQT+GNLRSPHSY  +EDD    DES C + +A CEGIVDCIKK+V  +  +VK
Sbjct: 288 CKTMRACQTYGNLRSPHSYADAEDD----DESVCTI-EAGCEGIVDCIKKSVTSNPAKVK 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118168|ref|XP_002331574.1| predicted protein [Populus trichocarpa] gi|222873798|gb|EEF10929.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/322 (71%), Positives = 266/322 (82%), Gaps = 7/322 (2%)

Query: 33  FNP---PSSPRSLSRNFCRVQATIL-QDEEEKVVVEESSPLKNFPNDDE-PPETGSASAL 87
           FNP   P  P + S  FCRVQAT+  ++E+EKVVVEES     F +  E  P+  S + L
Sbjct: 42  FNPTSLPFPPSTRSAKFCRVQATVFKENEDEKVVVEESFRPSTFTHGPENSPQPSSPTEL 101

Query: 88  EKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFG 147
           +KWV+K EQSVN+ LT+SV+ +LDALY  RDYARF+VLETIARVPYFAFISVLH+YESFG
Sbjct: 102 DKWVVKLEQSVNVFLTDSVVTILDALYHGRDYARFYVLETIARVPYFAFISVLHLYESFG 161

Query: 148 WWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPR 207
           WWRR+DY+KVHFAESWNEMHHLLIMEELGGN+ WFDRFLAQH+A  YY +TV MY +SPR
Sbjct: 162 WWRRSDYIKVHFAESWNEMHHLLIMEELGGNSLWFDRFLAQHMAFFYYIMTVLMYALSPR 221

Query: 208 MAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
           MAYHFSECVE+HAFETYDKFIKAQGE L+KMPAP VA+KYYT GDLYLFDEFQT+R P+S
Sbjct: 222 MAYHFSECVENHAFETYDKFIKAQGEDLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHS 281

Query: 268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQAD 327
           RRPKIENLYDVFLNIRDDEAEHCKTM ACQTHGNLRSPHSY ED F  ED++G  + QAD
Sbjct: 282 RRPKIENLYDVFLNIRDDEAEHCKTMGACQTHGNLRSPHSYPEDAF--EDDTGSELRQAD 339

Query: 328 CEGIVDCIKKAVAVSTPRVKQN 349
           C G+ DC++K+V     + KQN
Sbjct: 340 CGGVADCLEKSVTSPPSKQKQN 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2005514	351	IM "IMMUTANS" [Arabidopsis tha	0.833	0.829	0.734	1.1e-119
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.389	0.385	0.314	1.9e-11
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	0.355	0.389	0.293	4.4e-10
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	0.418	0.443	0.25	3.4e-09
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.392	0.387	0.273	4.6e-09
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.386	0.391	0.276	8.5e-09
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	0.386	0.415	0.297	9.8e-09
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	0.392	0.426	0.266	1.3e-08
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.441	0.435	0.277	2e-06
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.564	0.522	0.241	4e-05

TAIR|locus:2005514 IM "IMMUTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 218/297 (73%), Positives = 248/297 (83%)

Query:    48 RVQATILQDXXXXXXXXXSSPLKNFPNDD--EPPE--TGSASALEKWVIKFEQSVNILLT 103
             RVQATILQD         S   +     +  E P   + S SA E W+IK EQ VN+ LT
Sbjct:    54 RVQATILQDDEEKVVVEESFKAETSTGTEPLEEPNMSSSSTSAFETWIIKLEQGVNVFLT 113

Query:   104 ESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESW 163
             +SVI +LD LYRDR YARFFVLETIARVPYFAF+SVLHMYE+FGWWRRADYLKVHFAESW
Sbjct:   114 DSVIKILDTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESW 173

Query:   164 NEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFET 223
             NEMHHLLIMEELGGN+WWFDRFLAQHIA  YYF+TVF+Y++SPRMAYHFSECVESHA+ET
Sbjct:   174 NEMHHLLIMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYET 233

Query:   224 YDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIR 283
             YDKF+KA GE+LK MPAP +A+KYYTGGDLYLFDEFQT+R PN+RRP IENLYDVF+NIR
Sbjct:   234 YDKFLKASGEELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIR 293

Query:   284 DDEAEHCKTMKACQTHGNLRSPHSYSEDDFGCEDESGCIVAQ-ADCEGIVDCIKKAV 339
             DDEAEHCKTM+ACQT G+LRSPHS  EDD   E+ESGC+V + A CEGIVDC+KK++
Sbjct:   294 DDEAEHCKTMRACQTLGSLRSPHSILEDD-DTEEESGCVVPEEAHCEGIVDCLKKSI 349

GO:0005739 "mitochondrion" evidence=ISM

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009658 "chloroplast organization" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009657 "plastid organization" evidence=IMP

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=TAS

GO:0009644 "response to high light intensity" evidence=TAS

GO:0009579 "thylakoid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 44/140 (31%), Positives = 72/140 (51%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH+     +     ++K    E+ NE  HL+
Sbjct:   167 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 226

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK 229
              M EL     W++R L   +    +F + F+ YVISPR+A+     +E  A  +Y +F+K
Sbjct:   227 TMMELV-KPKWYERLLVM-LVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLK 284

Query:   230 -AQGEKLKKMPAPAVAIKYY 248
                  K++ + APA+AI Y+
Sbjct:   285 DIDNGKIENVAAPAIAIDYW 304

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 37/126 (29%), Positives = 63/126 (50%)

Query:   124 VLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFD 183
             +LET+A VP      +LH+     +     ++K    E+ NE  HL+   EL     W++
Sbjct:   145 LLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFIELS-QPKWYE 203

Query:   184 RFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIK-AQGEKLKKMPAPA 242
             R +   +   ++      YVISP++A+  +  +E  A  +Y +F+K     K +  PAPA
Sbjct:   204 RAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPA 263

Query:   243 VAIKYY 248
             +AI Y+
Sbjct:   264 IAIDYW 269

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 37/148 (25%), Positives = 72/148 (48%)

Query:   102 LTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAE 161
             + +S+    D  ++ R   R  +LET+A VP      ++H      + +   ++K    E
Sbjct:   134 MVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEE 193

Query:   162 SWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF 221
             + NE  HL+   E+     W++R L   +   ++   +  Y+ISP+ A+     +E  A 
Sbjct:   194 AENERMHLMTFMEVA-KPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAI 252

Query:   222 ETYDKFIKA-QGEKLKKMPAPAVAIKYY 248
              +Y +F+K      ++ +PAPA+A+ Y+
Sbjct:   253 HSYTEFLKELDNGNIENVPAPAIAVDYW 280

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 38/139 (27%), Positives = 68/139 (48%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH      + +   ++K    E+ NE  HL+
Sbjct:   168 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLM 227

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
                E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y +F+K 
Sbjct:   228 TFMEVA-KPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 286

Query:   231 QGE-KLKKMPAPAVAIKYY 248
               +  ++ +PAPA+AI Y+
Sbjct:   287 LDKGNIENVPAPAIAIDYW 305

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 152 (58.6 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
 Identities = 39/141 (27%), Positives = 73/141 (51%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH+     +     +++    E+ NE  HL+
Sbjct:   159 DIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLM 218

Query:   171 IMEELGGNAWWFDRFLAQHIAV-AYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI 228
                E+     W++R L   +AV   +F   F+ Y++SP++A+     +E  A  +Y +++
Sbjct:   219 TFMEVA-KPRWYERALV--LAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYL 275

Query:   229 K-AQGEKLKKMPAPAVAIKYY 248
             K  +  K++ +PAP +AI Y+
Sbjct:   276 KDIEAGKIENVPAPPIAIDYW 296

GO:0005739 "mitochondrion" evidence=IC

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
 Identities = 42/141 (29%), Positives = 71/141 (50%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      ++H      + +   ++K    E+ NE  HL+
Sbjct:   139 DLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLM 198

Query:   171 IMEELGGNAWWFDRFLAQHIAV-AYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFI 228
                E+     W++R L   IAV   +F   F+ Y+ISP+ A+     +E  A  +Y +F+
Sbjct:   199 TFMEVA-KPNWYERALV--IAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 255

Query:   229 KA-QGEKLKKMPAPAVAIKYY 248
             K      ++ +PAPA+AI Y+
Sbjct:   256 KELDNGNIENVPAPAIAIDYW 276

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 150 (57.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 37/139 (26%), Positives = 66/139 (47%)

Query:   111 DALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLL 170
             D  ++ R   R  +LET+A VP      +LH      +     + K    E+ NE  HL+
Sbjct:   135 DVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLM 194

Query:   171 IMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA 230
                E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +F+K 
Sbjct:   195 TFMEVA-KPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKE 253

Query:   231 QGE-KLKKMPAPAVAIKYY 248
               +  ++ +PAPA+AI Y+
Sbjct:   254 LDKGNIENVPAPAIAIDYW 272

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 50/180 (27%), Positives = 85/180 (47%)

Query:   116 DRDYARFFV-LETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE 174
             ++++ R FV LE++A VP      + H+       R   +++    E++NE  HLL   +
Sbjct:   146 EKEWLRRFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLK 205

Query:   175 LGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFSECVESHAFETYDKFIK-AQG 232
             +     WF R +    A   +F   F+ Y+ISPR  + F   +E  A  TY + IK  + 
Sbjct:   206 MA-EPGWFMRLMVLG-AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLES 263

Query:   233 EKL---KKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEH 289
              +L   +K+ AP +A+KY+              ++P   R     + D+ L +R DEA+H
Sbjct:   264 GRLPHWEKLEAPEIAVKYW--------------KMPEGNR----TMKDLLLYVRADEAKH 305

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 54/224 (24%), Positives = 92/224 (41%)

Query:    95 EQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADY 154
             +Q +N     + I+    L   +  +RF  LE+IA VP      + H++      R   +
Sbjct:   125 QQQINKGSPTTSIVAAKPLTEAQWLSRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGW 184

Query:   155 LKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFM-YVISPRMAYHFS 213
             ++    E++NE  HLL   ++    W     +    A   YF  +F+ Y+ISP++ + F 
Sbjct:   185 IETLLEEAYNERMHLLTFLKMCEPGWLMKILIIG--AQGVYFNAMFVAYLISPKICHRFV 242

Query:   214 ECVESHAFETYDKFIKA--QGEKLK----KMPAPAVAIKYYTGGDLYLFDEFQTARLPNS 267
               +E  A  TY + I+   +G+  K    K   P +A+ Y+  G            +P  
Sbjct:   243 GYLEEEAVHTYTRSIEELERGDLPKWSDPKFQVPEIAVSYW--G------------MPEG 288

Query:   268 RRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGNLRSPHSYSED 311
              R     + D+ L IR DEA H            +  P+ +  D
Sbjct:   289 HR----TMRDLLLYIRADEANHRGVHHTLGNLNQVEDPNPFVSD 328

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56X52	AOX4_ARATH	1, ., -, ., -, ., -	0.7508	0.8452	0.8404	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XI.1685.1	hypothetical protein (295 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.2559.1	iron superoxide dismutase (EC-1.15.1.1); Destroys radicals which are normally produced within t [...] (223 aa)							•		0.532
	estExt_Genewise1_v1.C_LG_XIII3158	manganese superoxide dismutase (EC-1.15.1.1); Destroys radicals which are normally produced wit [...] (226 aa)							•		0.525
	grail3.0095006301	RecName- Full=Superoxide dismutase; EC=1.15.1.1;; Destroys radicals which are normally produced [...] (230 aa)							•		0.523
	gw1.V.3253.1	iron superoxide dismutase (EC-1.15.1.1); Destroys radicals which are normally produced within t [...] (223 aa)							•		0.521

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	1e-96
pfam01786	214	pfam01786, AOX, Alternative oxidase	6e-76
PLN02478	328	PLN02478, PLN02478, alternative oxidase	7e-15

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  283 bits (726), Expect = 1e-96
 Identities = 82/188 (43%), Positives = 103/188 (54%), Gaps = 21/188 (11%)

Query: 114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIME 173
           Y DR  ARF  LET+ARVP      +LH+Y   G WR   ++K    E+ NE  HLLI E
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 174 ELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE 233
           ELGG  WWF RF+AQH AV +Y     +Y+ISPR+A+ F   +E  A +TY +F+K   E
Sbjct: 61  ELGGPGWWFRRFVAQHQAV-FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEE 119

Query: 234 KLK-KMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT 292
            LK  +PAP +AI+YY                      +   LYDVF+ IR DEAEH K 
Sbjct: 120 GLKPDLPAPEIAIEYYRL-------------------GEDATLYDVFVAIRADEAEHRKV 160

Query: 293 MKACQTHG 300
             AC   G
Sbjct: 161 NHACADLG 168

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  232 bits (594), Expect = 6e-76
 Identities = 62/234 (26%), Positives = 88/234 (37%), Gaps = 30/234 (12%)

Query: 76  DEPPETGSASALEKWVIKFEQSVNILLTESVIMVLD-------ALYRDRDYARFFVLETI 128
               E  +     +        V   L + +    D        +  +R   R   LET+
Sbjct: 3   YTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLETV 62

Query: 129 ARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQ 188
           A VP      + H+       R   +++    E+ NE  HLL   EL G   WF+RFL  
Sbjct: 63  AGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLEL-GKPGWFERFLVL 121

Query: 189 HIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGE-KLKKMPAPAVAIKY 247
                ++     +Y++SPRMA+ F   +E  A  TY  F+K     KL  +PAP +AI Y
Sbjct: 122 LAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAIDY 181

Query: 248 YTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQTHGN 301
           +   +L                     L DV L IR DEA H        T  N
Sbjct: 182 WRLPELDA------------------TLRDVILVIRADEAHHR---DVNHTLAN 214

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score = 74.2 bits (182), Expect = 7e-15
 Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 37/188 (19%)

Query: 111 DALYRDRDYARFFVLETIARVPYFAFISVLHM-----YESFGWWRRADYLKVHFAESWNE 165
           D  ++ R   R  +LET+A VP      +LH+     +E  G W     +K    E+ NE
Sbjct: 142 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGW-----IKALLEEAENE 196

Query: 166 MHHLLIMEELGGNAWWFDR---FLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFE 222
             HL+   E+    W+ +R      Q +    YF+    Y+ISP+ A+     +E  A  
Sbjct: 197 RMHLMTFMEVAKPKWY-ERALVIAVQGVFFNAYFLG---YLISPKFAHRIVGYLEEEAIH 252

Query: 223 TYDKFIKAQGE-KLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLN 281
           +Y +F+K     K++ +PAPA+AI Y+                   R P    L DV   
Sbjct: 253 SYTEFLKDLDAGKIENVPAPAIAIDYW-------------------RLPADATLRDVVTV 293

Query: 282 IRDDEAEH 289
           +R DEA H
Sbjct: 294 VRADEAHH 301

Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	97.15
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	96.92
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	95.0
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	94.25
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	92.29
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	91.08
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	89.0

>PLN02478 alternative oxidase

Probab=100.00  E-value=7.8e-79  Score=581.93  Aligned_cols=206  Identities=25%  Similarity=0.387  Sum_probs=196.6

Q ss_pred             CCCCCCCCCCC-------CCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccccchhhhhhhhhhcCchhHHHH
Q 018864           66 SSPLKNFPNDD-------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFIS  138 (349)
Q Consensus        66 ~~p~~~~~~~~-------~~p~~~~d~~a~~~v~~~r~~fd~~~~~~l~~~~D~l~~~R~~~Rfi~LETVA~VPgmv~~~  138 (349)
                      .+||++|+.++       .+|++++|++|+++|+.+|+.+|++            |++||++||+||||||||||||++|
T Consensus       102 ~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~------------f~~R~~~R~ifLETVA~VPGmV~gm  169 (328)
T PLN02478        102 FRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLF------------FQRRYGCRAMMLETVAAVPGMVGGM  169 (328)
T ss_pred             cCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHH------------hhcchhhHHHHHHHHhcCchHHHHH
Confidence            47999998665       8999999999999999999988875            8999999999999999999999999


Q ss_pred             HHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhh
Q 018864          139 VLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVES  218 (349)
Q Consensus       139 ~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEE  218 (349)
                      ++||+++|+|+||+|||++|||||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+||||||||||
T Consensus       170 lrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~-w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEE  248 (328)
T PLN02478        170 LLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK-WYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEE  248 (328)
T ss_pred             HHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998 89999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhhhhcc
Q 018864          219 HAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTMKACQ  297 (349)
Q Consensus       219 EAV~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn~anh  297 (349)
                      |||+|||+||+|++ |.++|+|||+||++||++                   |+++||||||++||+|||+||+|   ||
T Consensus       249 EAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~L-------------------P~~atLrDVi~~IRaDEa~HRdV---NH  306 (328)
T PLN02478        249 EAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRL-------------------PADATLRDVVTVVRADEAHHRDV---NH  306 (328)
T ss_pred             HHHHHHHHHHHHhhcCcccCCCCChHHHHHhCC-------------------CCCCcHHHHHHHHHhhhhhhhcc---Cc
Confidence            99999999999986 899999999999999987                   88999999999999999999999   89


Q ss_pred             cccCCCCCC
Q 018864          298 THGNLRSPH  306 (349)
Q Consensus       298 t~anL~s~~  306 (349)
                      +++|+....
T Consensus       307 ~~sd~~~~~  315 (328)
T PLN02478        307 FASDIHYQG  315 (328)
T ss_pred             chhhhhhcc
Confidence            999975433

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=3.2e-76  Score=540.71  Aligned_cols=197  Identities=36%  Similarity=0.527  Sum_probs=187.8

Q ss_pred             CCCCCCC--------CCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHhhhhccccchhhhhhhhhhcCchhHHHHHHH
Q 018864           70 KNFPNDD--------EPPETGSASALEKWVIKFEQSVNILLTESVIMVLDALYRDRDYARFFVLETIARVPYFAFISVLH  141 (349)
Q Consensus        70 ~~~~~~~--------~~p~~~~d~~a~~~v~~~r~~fd~~~~~~l~~~~D~l~~~R~~~Rfi~LETVA~VPgmv~~~~~H  141 (349)
                      |+|+.++        ++|++++|+++..+|+.+|+.+|+            +|++||++||+||||||||||||++|++|
T Consensus         1 ~~~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~------------~~~~r~~~R~~~LEtVA~VPg~v~~~~~H   68 (207)
T PF01786_consen    1 PIYTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDL------------LFEKRWLHRFIFLETVAGVPGMVGGMVRH   68 (207)
T ss_pred             CCCCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHH------------hccccchhheeeeeecccCChHHHHHHHH
Confidence            6787655        799999999999998877776666            69999999999999999999999999999


Q ss_pred             HHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHH
Q 018864          142 MYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAF  221 (349)
Q Consensus       142 L~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV  221 (349)
                      |+++++||||+|||++|+|||||||||||||++|++|+ |++|++++++|++|||+|+++|++|||+|||||||||||||
T Consensus        69 l~slr~~~rd~g~I~~lleEaeNErmHLli~~~l~~p~-~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv  147 (207)
T PF01786_consen   69 LRSLRRMKRDGGWIKTLLEEAENERMHLLIFEELGKPS-WFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAV  147 (207)
T ss_pred             HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCC-CCCHHHHHHHHHhhhhhhHhhhhhcccc
Q 018864          222 ETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPK-IENLYDVFLNIRDDEAEHCKTMKACQTH  299 (349)
Q Consensus       222 ~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~-~atLrDV~l~IRaDEa~Hr~vn~anht~  299 (349)
                      +|||+||+||+ |+++++|||+||++||++                   |+ ++||||||++||+||++||++   ||++
T Consensus       148 ~tYt~~l~di~~g~l~~~paP~iAi~Yw~l-------------------~~~~atlrDvi~~IRaDEa~Hr~v---NH~~  205 (207)
T PF01786_consen  148 HTYTEFLEDIDEGKLPNMPAPEIAIDYWGL-------------------PELDATLRDVILAIRADEAEHRDV---NHTL  205 (207)
T ss_pred             HHHHHHHHHcccCCCCCCCCCHHHHHHhCC-------------------CccCchHHHHHHHHHhhHHHHHHh---hhhh
Confidence            99999999998 799999999999999998                   55 899999999999999999999   8999


Q ss_pred             cC
Q 018864          300 GN  301 (349)
Q Consensus       300 an  301 (349)
                      ||
T Consensus       206 a~  207 (207)
T PF01786_consen  206 AD  207 (207)
T ss_pred             cC
Confidence            87

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=5e-75  Score=518.45  Aligned_cols=166  Identities=46%  Similarity=0.786  Sum_probs=157.9

Q ss_pred             hccccchhhhhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 018864          114 YRDRDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAVA  193 (349)
Q Consensus       114 ~~~R~~~Rfi~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~L~~p~~~~~R~laq~~~~~  193 (349)
                      |++||++||+||||||||||||++|++||+|+||||||+||||+|||||||||||||||++|+||++|++|++++++++ 
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~v-   79 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAV-   79 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-
Confidence            5789999999999999999999999999999999999999999999999999999999999999998888887777555 


Q ss_pred             HHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhc-ccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCC
Q 018864          194 YYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQG-EKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKI  272 (349)
Q Consensus       194 fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~-~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~  272 (349)
                      |||+|+++|++|||+|||||||||||||.|||+||++++ |.++++|||+||++||++                   |++
T Consensus        80 fy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l-------------------~~~  140 (168)
T cd01053          80 FYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRL-------------------GED  140 (168)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCC-------------------CCC
Confidence            999999999999999999999999999999999999998 566699999999999998                   689


Q ss_pred             CCHHHHHHHHHhhhhhhHhhhhhcccccCC
Q 018864          273 ENLYDVFLNIRDDEAEHCKTMKACQTHGNL  302 (349)
Q Consensus       273 atLrDV~l~IRaDEa~Hr~vn~anht~anL  302 (349)
                      +||||||++||+|||+||+|   ||+++|+
T Consensus       141 atl~Dvi~~IR~DEa~Hr~v---nh~~~~~  167 (168)
T cd01053         141 ATLYDVFVAIRADEAEHRKV---NHACADL  167 (168)
T ss_pred             CcHHHHHHHHHhhHHhHHHH---HHHhhcC
Confidence            99999999999999999999   6888876

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=97.15  E-value=0.0047  Score=56.01  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=72.8

Q ss_pred             cccchHHHHHHHHHhHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHH
Q 018864          150 RRADYLKVHFAESWNEMHHLLIMEEL----G-GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETY  224 (349)
Q Consensus       150 Rd~~wI~tlleEAeNErmHLLi~~~L----~-~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TY  224 (349)
                      |+...-+.+-+=+..|..||..|.++    + .|+ ++.-+   --.+.| .+-++.=++.++.++-|+.-+|+-...-|
T Consensus        27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps-~l~Pl---W~~~gf-~lG~~tal~G~~~a~~~~~avE~~V~~Hy  101 (165)
T cd01042          27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPS-LLLPL---WYVAGF-ALGALTALLGKKAAMACTAAVETVVEEHY  101 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-hHHHH---HHHHHH-HHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence            33333344555567899999998665    2 455 23222   112223 23356677899999999999999999999


Q ss_pred             HHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864          225 DKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT  292 (349)
Q Consensus       225 T~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v  292 (349)
                      ..-|++++..                +                    +..+++.|..+|+||.+|++.
T Consensus       102 ~~ql~~L~~~----------------~--------------------d~~l~~~l~~~r~DE~~H~d~  133 (165)
T cd01042         102 NDQLRELPAQ----------------P--------------------DKELRAIIEQFRDDELEHADI  133 (165)
T ss_pred             HHHHHHhhcc----------------C--------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            9999988521                1                    337999999999999999999

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=96.92  E-value=0.0047  Score=56.26  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHH
Q 018864          156 KVHFAESWNEMHHLLIMEELG-----GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKA  230 (349)
Q Consensus       156 ~tlleEAeNErmHLLi~~~L~-----~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~d  230 (349)
                      ..+-+=.+.|..||..|.++-     .|+ ++   ....-.+.| .+=++.=++.++.++-+++-+|+....-|..-|++
T Consensus        36 ~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS-~l---~Plw~~~g~-~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~  110 (172)
T PF03232_consen   36 PFLKEMAEEEKDHLAWFEQLLPELRVRPS-LL---NPLWYVAGF-ALGALTALLGDKAAMACTAAVETVVEEHYNDQLRE  110 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHcCCCCc-HH---HHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444558999999997763     466 23   222222333 23356778999999999999999999999999998


Q ss_pred             hcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864          231 QGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT  292 (349)
Q Consensus       231 i~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v  292 (349)
                      +...              .                   .+.+..++++|..+|+||.+|+++
T Consensus       111 L~~~--------------~-------------------~~~d~~l~~~i~~~r~DE~~H~d~  139 (172)
T PF03232_consen  111 LPAM--------------G-------------------EEEDPELRAIIEQFRDDELEHRDT  139 (172)
T ss_pred             HHhc--------------c-------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence            8520              0                   034557999999999999999999

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=95.00  E-value=0.22  Score=46.94  Aligned_cols=95  Identities=22%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             HHHHHHHhHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHh
Q 018864          157 VHFAESWNEMHHLLIMEEL----G-GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDKFIKAQ  231 (349)
Q Consensus       157 tlleEAeNErmHLLi~~~L----~-~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di  231 (349)
                      .+.+-++.|-.||-.|.+.    + .|+ ++ ..+-.+.+  | .+-.+.=|+++++|.-|++-+|+--..-|.+-|+++
T Consensus        75 ~l~em~d~E~~HL~~f~~~l~e~~vRPs-ll-~P~W~~~~--F-alGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L  149 (204)
T COG2941          75 QLKEMADEEIDHLAWFEQRLLELGVRPS-LL-NPLWYAAA--F-ALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLREL  149 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCcc-HH-HHHHHHHH--H-HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455678899888654    2 355 22 22222211  1 223567899999999999999999999999988877


Q ss_pred             cccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhh
Q 018864          232 GEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM  293 (349)
Q Consensus       232 ~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn  293 (349)
                      ++                                     .++.++--+...|.||.+|.+.-
T Consensus       150 ~~-------------------------------------~d~~lr~~l~qfR~DE~eH~d~A  174 (204)
T COG2941         150 PN-------------------------------------LDAELRAILAQFRDDELEHLDNA  174 (204)
T ss_pred             hh-------------------------------------ccHHHHHHHHHHhhHHHHHHHHH
Confidence            42                                     24478899999999999999983

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=94.25  E-value=0.16  Score=43.85  Aligned_cols=128  Identities=18%  Similarity=0.158  Sum_probs=85.1

Q ss_pred             hhhhhhhcCchhHHHHHHHHHhhcCCcc-ccchHHHHHHHHHhHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHH
Q 018864          123 FVLETIARVPYFAFISVLHMYESFGWWR-RADYLKVHFAESWNEMHHLLIMEEL----GGNAWWFDRFLAQHIAVAYYFV  197 (349)
Q Consensus       123 i~LETVA~VPgmv~~~~~HL~~~~g~~R-d~~wI~tlleEAeNErmHLLi~~~L----~~p~~~~~R~laq~~~~~fy~~  197 (349)
                      +++|-++|.-|=-.++...++..+...- +...-+.+...|.-|+-|..++.++    ++...+...+..   .+.++..
T Consensus        17 ~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~   93 (154)
T cd07908          17 LLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTG   93 (154)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCc
Confidence            5677788877766667777777665432 2345567778999999999876554    443322221110   0111100


Q ss_pred             HHHHHhhchhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHH
Q 018864          198 TVFMYVISPRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYD  277 (349)
Q Consensus       198 ~~~~YlvSPr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrD  277 (349)
                      -.+...-++.-+.++.--+|+.|+..|.++++..+                                       +...++
T Consensus        94 ~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~---------------------------------------d~~~r~  134 (154)
T cd07908          94 KYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIK---------------------------------------DPYIRA  134 (154)
T ss_pred             cccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------------------CHHHHH
Confidence            01122345666899999999999999999887542                                       347899


Q ss_pred             HHHHHHhhhhhhHhh
Q 018864          278 VFLNIRDDEAEHCKT  292 (349)
Q Consensus       278 V~l~IRaDEa~Hr~v  292 (349)
                      ++..|.+||..|.+.
T Consensus       135 ll~~I~~eE~~H~~~  149 (154)
T cd07908         135 LLNRIILDEKLHIKI  149 (154)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999886

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=92.29  E-value=3.4  Score=33.15  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHH
Q 018864          153 DYLKVHFAESWNEMHHLLIMEELG-------GNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYD  225 (349)
Q Consensus       153 ~wI~tlleEAeNErmHLLi~~~L~-------~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT  225 (349)
                      +.-..+..-|..|+.|..++.++-       -|..-...+........+ ..-......++..+.+..--+|..|+..|.
T Consensus        28 ~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~  106 (139)
T cd01045          28 ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPE-FKKALESLMDPLEALRLAIEIEKDAIEFYE  106 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhh-HHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            334466678899999998775552       121111111111111111 001245667778888999999999999999


Q ss_pred             HHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 018864          226 KFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKT  292 (349)
Q Consensus       226 ~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~v  292 (349)
                      ++++...                                       +...+++|..|..||..|...
T Consensus       107 ~~~~~~~---------------------------------------d~~~~~~~~~l~~~E~~H~~~  134 (139)
T cd01045         107 ELAEKAE---------------------------------------DPEVKKLFEELAEEERGHLRL  134 (139)
T ss_pred             HHHHHcC---------------------------------------CHHHHHHHHHHHHHHHHHHHH
Confidence            9887653                                       226889999999999999876

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=91.08  E-value=0.68  Score=41.38  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             hhhhhhhcCchhHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHH----hcCChHHHHHHHHHHHHHHHHHHH
Q 018864          123 FVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHFAESWNEMHHLLIMEE----LGGNAWWFDRFLAQHIAVAYYFVT  198 (349)
Q Consensus       123 i~LETVA~VPgmv~~~~~HL~~~~g~~Rd~~wI~tlleEAeNErmHLLi~~~----L~~p~~~~~R~laq~~~~~fy~~~  198 (349)
                      .++|-++|.=|=-.+++.-++....+..+...-..+.+.|-.|..|+-++-+    |++.+.           + .+|  
T Consensus        24 ~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~-----------g-~pw--   89 (156)
T cd01051          24 LLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQ-----------G-VPW--   89 (156)
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----------C-CcC--
Confidence            6788889888855555566666666533445666888999999999976533    332110           0 111  


Q ss_pred             HHHHhhc---hhhhhhhhhhhhhhHHHHHHHHHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCH
Q 018864          199 VFMYVIS---PRMAYHFSECVESHAFETYDKFIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENL  275 (349)
Q Consensus       199 ~~~YlvS---Pr~ahRfvgylEEEAV~TYT~~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atL  275 (349)
                      ...|+.+   +...-+-+=-.|+.|..+|.+.++.++                                       |.++
T Consensus        90 ~~~yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---------------------------------------Dp~v  130 (156)
T cd01051          90 TAAYIQSSGNLVADLRSNIAAESRARLTYERLYEMTD---------------------------------------DPGV  130 (156)
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------------------CHHH
Confidence            1223221   222223333468899999999887763                                       3389


Q ss_pred             HHHHHHHHhhhhhhHhh
Q 018864          276 YDVFLNIRDDEAEHCKT  292 (349)
Q Consensus       276 rDV~l~IRaDEa~Hr~v  292 (349)
                      +|++..|+.||..|.+.
T Consensus       131 ~~~l~~I~~rE~~H~~~  147 (156)
T cd01051         131 KDTLSFLLVREIVHQNA  147 (156)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999876

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=89.00  E-value=2.4  Score=32.13  Aligned_cols=97  Identities=19%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             ccchHHHHHHHHHhHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhHHHHHHH
Q 018864          151 RADYLKVHFAESWNEMHHLLIMEEL----GGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK  226 (349)
Q Consensus       151 d~~wI~tlleEAeNErmHLLi~~~L----~~p~~~~~R~laq~~~~~fy~~~~~~YlvSPr~ahRfvgylEEEAV~TYT~  226 (349)
                      +.++.+.+...+..|+.|...+.++    +++.......       ...+........++..+-...-..|..+...|..
T Consensus        26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~   98 (130)
T cd00657          26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH-------LLAAYALPKTSDDPAEALRAALEVEARAIAAYRE   98 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH-------HHHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667778889999999877655    3322111111       0000111122334444444555566666666666


Q ss_pred             HHHHhcccccCCCCCHHHHhhhcCCCCcchhhhhhccCCCCCCCCCCCHHHHHHHHHhhhhhhHhhh
Q 018864          227 FIKAQGEKLKKMPAPAVAIKYYTGGDLYLFDEFQTARLPNSRRPKIENLYDVFLNIRDDEAEHCKTM  293 (349)
Q Consensus       227 ~L~di~~~~k~~pAP~iAi~Yw~l~dly~fde~qt~~~p~~rrP~~atLrDV~l~IRaDEa~Hr~vn  293 (349)
                      +++...                                       +..+++++..|..||..|....
T Consensus        99 ~~~~~~---------------------------------------d~~~~~~~~~~~~~E~~H~~~~  126 (130)
T cd00657          99 LIEQAD---------------------------------------DPELRRLLERILADEQRHAAWF  126 (130)
T ss_pred             HHHhcC---------------------------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence            554431                                       3368999999999999998863

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 45/349 (12%), Positives = 100/349 (28%), Gaps = 90/349 (25%)

Query: 4   TLSQTVSVFSNKAINLKSVASFNTIKTLRFNPPS----SPRSLS------RNF-CRVQAT 52
           T  +  S+   K ++ +        + L   P      +PR LS      R+        
Sbjct: 299 TPDEVKSLLL-KYLDCR-------PQDL---PREVLTTNPRRLSIIAESIRDGLATWD-N 346

Query: 53  ILQDEEEKVVVEESSPLKNFPNDDEPPETGSASALEKWVIKFEQSVNILLTESVIMVL-- 110
                 +K+    ++ +++  N  EP E       ++  + F  S +I     ++ ++  
Sbjct: 347 WKHVNCDKL----TTIIESSLNVLEPAEY--RKMFDRLSV-FPPSAHI--PTILLSLIWF 397

Query: 111 DALYRD-RDYARFFVLETIARVPYFAFISVLHMYESFGWWRRADYLKVHF-AESWNEMHH 168
           D +  D           ++           +             YL++    E+   +H 
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----------YLELKVKLENEYALHR 447

Query: 169 LLIMEELGGNAWWFDRFLAQHIAVAYYFVTVFMYVISPRMAYHFSECVESHAFETYDK-- 226
            ++        +  D  +  ++    YF   + ++      +H            +    
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLD--QYF---YSHI-----GHHLKNIEHPERMTLFRMVF 497

Query: 227 ----FIKAQGEKLKKMPAPAVAIKYY--TGGDLYLFDEFQTARLPNSRRPKIENLYDVFL 280
               F++    K++       A      T   L  +  +      N   PK E L +  L
Sbjct: 498 LDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYIC---DND--PKYERLVNAIL 549

Query: 281 NIRDDEAEHCKTMKACQTHGNLRSPHSYSEDD---FGCEDESGCIVAQA 326
           +      E+            + S ++    D        E   I  +A
Sbjct: 550 DFLPKIEENL-----------ICSKYT----DLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00