Citrus Sinensis ID: 018874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEccHHcccccccccccccEcccHHHHcccccccHHcccccccccccccccccccccccccccccccccccccEccccHHHHHcccccccccccEEcccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHEEccccccccHHccccccccHEEccHHHccc
Coil and Loop (DISEMBL)
msysrdssenVVHIIVgngapehwipnpndssvwateddypddppsisnsncqsqtrsnseqppnkksrngsqdvnskSKAIGKMFFKTKlcckfrngtcpyitncnfahsieelrrpppnwQEIVAAHEEerastneipreefqipsivstnFAVETQrsykgrhckkfyteegcpygenctflhdeqsknresvaislgpggyggggaaaaaagnnigvsnvkpsnwktricnkweltgycpfgnkchfahGIQELHrfggglvesenndssaapsdsklvgvpsktpvdTVVASVtsvphadvyhmgvpsqrssivvqrpgqrshekwkgpdkisriygdwiddie
Flexible Loop (DISEMBL)
msysrdssenVVHIIvgngapehwipNPNDSSVWATEDDYPDDPPSIsnsncqsqtrsnseqppnkksrngsqdvnskSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEerastneipreefqipsivstnfavetqrsykGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNnigvsnvkpsnwKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSsaapsdsklvgvpskTPVDTVVASVTSVPHAdvyhmgvpsqrssivvqrpgqrshekwkgpdkisriygdwiddie
Low Complexity Region (SEG)
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLgpggyggggaaaaaagNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE
Disordered region (IsUnstruct)
**********VVHIIVGNGAPEHWI********************************************************IGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELR*****W**I******************FQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD*********AISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGL***************************TVVASVTSVPHADVYHMG**************************ISRIYGDWI****
Disordered Region (DISOPRED)
*****************************************************************************************KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGI**********************************************************************************SRIYGDWIDDI*
Disordered Region (DISEMBL)
*********NVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSI******************************KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVE*****************VPSKTPVDTVVASVTSVPHADVYHMGVPSQ******************GPDKISRIYGDWIDDIE
Disordered Region (DISPRO)
*****DSSENVVHIIVGNGAPEHWIPNPNDSSVWATE*********************************************GKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAH*******************************SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAA*************KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR*******************************************************SSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9LQM3	384	Zinc finger CCCH domain-c	yes	no	0.974	0.885	0.582	1e-108
Q84UQ3	367	Zinc finger CCCH domain-c	yes	no	0.954	0.907	0.559	1e-101
Q9LT81	386	Zinc finger CCCH domain-c	no	no	0.724	0.655	0.379	3e-39
Q5PP65	252	Zinc finger CCCH domain-c	no	no	0.455	0.630	0.466	4e-37
Q7F8R0	300	Zinc finger CCCH domain-c	no	no	0.266	0.31	0.347	2e-10
Q69XQ3	295	Zinc finger CCCH domain-c	no	no	0.255	0.301	0.387	2e-10
Q7XPK1	309	Zinc finger CCCH domain-c	no	no	0.300	0.339	0.367	2e-09
A2ZVY5	333	Zinc finger CCCH domain-c	no	no	0.054	0.057	0.428	8e-07
Q6L5G1	343	Zinc finger CCCH domain-c	no	no	-0.02	-0.02	0.633	4e-06
Q9C9F5	308	Zinc finger CCCH domain-c	no	no	-0.03	-0.03	0.655	5e-06

>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/388 (58%), Positives = 262/388 (67%), Gaps = 48/388 (12%)

Query: 3   YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
           + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY     + + +     T  ++ 
Sbjct: 4   HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-----NRAWAMNPDNTSGDNN 58

Query: 62  QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
            PPNKK+R          +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 59  GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 118

Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
           ELRRPPPNWQEIVAAHEEER+        S  EIPREEFQIPS+VS+    E+ RS+KGR
Sbjct: 119 ELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSS--TAESGRSFKGR 176

Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGG---------------- 209
           HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAISLGPGGYG GG                
Sbjct: 177 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 236

Query: 210 -----AAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
                     +G+  G+  +KPSNWKTRICNKWE+TGYCPFG KCHFAHG  ELHRFGGG
Sbjct: 237 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 296

Query: 265 LVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPH-ADV-YHMGVPSQR-SSIVVQ 321
           LVE E  D  +   D+K      K   DT       VPH AD  YH GV  QR SS V Q
Sbjct: 297 LVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQ 356

Query: 322 RPGQRSHEKWKGPDKISRIYGDWIDDIE 349
           +PG R+H+KWKGP KISRIYGDWIDDIE
Sbjct: 357 KPGIRTHQKWKGPAKISRIYGDWIDDIE 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/370 (55%), Positives = 245/370 (66%), Gaps = 37/370 (10%)

Query: 10  NVVHIIVGNGAPEHWI---PNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNK 66
           N +HII     P+ W        D+ +WATEDDY +   +       S    + + PP K
Sbjct: 5   NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDY-NSQWNADGGGGGSSRAGSEQPPPGK 63

Query: 67  KSRNGSQDV----NSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNW 122
           KSR G         SKS+AIGKMFFKTKLCCKFR GTCPY+TNCNFAH +EELR+PPPNW
Sbjct: 64  KSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNW 123

Query: 123 QEIVAAHEEERASTNEIPREEFQIPSIVSTN------------FAVETQRSYKGRHCKKF 170
           QEIVAAHEE   +     REE QIP + S+                 + R+YKGRHCKKF
Sbjct: 124 QEIVAAHEEATEA-----REEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKF 178

Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPG--------GYGGGGAAAAAAGNNIGVS 222
           YT+EGCPYG+ CTFLHDEQSK RESVAISL P          Y    AAAA+A    G  
Sbjct: 179 YTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNG 238

Query: 223 NV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSK 281
            + KPSNWKTRICNKWE+TGYCPFG+KCHFAHG  ELH++GGGLV+ ++ D++A P DSK
Sbjct: 239 PMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATP-DSK 297

Query: 282 LVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPG--QRSHEKWKGPDKISR 339
              V +K P +T  AS T +PHADVYH+GV +QRS+I  QR G  QR  +KWKGPDKISR
Sbjct: 298 QAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISR 357

Query: 340 IYGDWIDDIE 349
           IYGDWID+ E
Sbjct: 358 IYGDWIDETE 367

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 151/295 (51%), Gaps = 42/295 (14%)

Query: 79  SKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERA 134
           +K    +F+KT++C KFR GTC     CNFAH IE+LR+PP NWQEIV    A  + ER 
Sbjct: 97  NKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERE 156

Query: 135 STNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQS---- 190
              E  RE   +  +V+ N+  + +   + + C+KF   E CPYG+ C F+H++ S    
Sbjct: 157 RERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE 216

Query: 191 ---KNRESVAISLGPGGYG--------------GGGAAAAAAGNNIGVSNVKPSNWKTRI 233
              K RES  IS+G                    G     A  NN GV  VK   WKTR+
Sbjct: 217 DSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGV--VKTVYWKTRL 274

Query: 234 CNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDT 293
           C K+++TG CPFG+KCHFAHG  ELH    G VE E  ++ A  S +K   VP+      
Sbjct: 275 CMKFDITGQCPFGDKCHFAHGQAELHN-SVGRVEGEAMNAVA--SVNKQAVVPANEAF-- 329

Query: 294 VVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDI 348
            +  +T V  AD   +    +R   ++         KW    KI+RIYGDWIDD+
Sbjct: 330 AMKPITQV-TADSSGLNEEGRRKKCLL---------KWSDSKKINRIYGDWIDDL 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 115/210 (54%), Gaps = 51/210 (24%)

Query: 162 YKGRHCKKFYTEEGCPY-GENCTFLHD-------------------EQSKNRESVAISLG 201
           +K + C KF     CPY   +C F H                    E S+NRES A+SLG
Sbjct: 72  FKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG 130

Query: 202 PGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF 261
           P G             N+    +K  NWKTRICNKW+ TGYCPFG+ CHFAHG  ELH F
Sbjct: 131 PRG-------------NV-AQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTF 176

Query: 262 GGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQR-SSIVV 320
           GGGLVE E    ++A  D+K  G      VDTV + V+          GV SQR SS V 
Sbjct: 177 GGGLVEGECKIGTSATLDTKQRG-----QVDTVTSLVSP---------GVSSQRTSSAVT 222

Query: 321 QRP-GQRSHEKWKGPDKISRIYGDWIDDIE 349
           Q+P G R+  KWKGPDKISR+YGDWIDDIE
Sbjct: 223 QKPNGVRTQRKWKGPDKISRVYGDWIDDIE 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 25/118 (21%)

Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGG------- 207
           + +T    K + C KF++  GCP+GE C FLH               PGGY         
Sbjct: 27  SFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHF-------------PGGYQAVAKMTNL 73

Query: 208 GGAAAAAAGNNIGVSNVKPS-----NWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
           GG A A     + + N  P        KTR+CNK+     C +G+KCHFAHG +EL +
Sbjct: 74  GGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGK 131

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN---NIGVSN 223
           C KF++  GCP+G +C FLH+     + +  ++       GG A AA  G      G  N
Sbjct: 38  CTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMT-----SHGGTAVAAPPGRMPLGPGAPN 92

Query: 224 VKP-SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
             P S+ KTR+CNK+     C +G+KCHFAHG +EL +
Sbjct: 93  GPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGK 130

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA 214
           + +T  S K + C KF++  GCP+GE C F H       ++VA +L  G       A A 
Sbjct: 31  SFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPG-GYQAVAKTLNLGNPAVPAPARAP 89

Query: 215 AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
             +  G ++   S+ KTR+C K+     C FG+KCHFAHG +EL +
Sbjct: 90  MDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGERELGK 135

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 203 GGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
           GG  G    A  A +   +       +KT +CNKWE TG CP+G++C FAHG+ EL
Sbjct: 233 GGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTEL 288

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 25/30 (83%)

Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
           +KT +CNKWE TG CP+G++C FAHG+ EL
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAEL 298

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 230 KTRICNKWELTGYCPFGNKCHFAHGIQEL 258
           KT +CNKW+ TG CP+G+ C FAHGI+EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
255573451	349	nucleic acid binding protein, putative [	0.974	0.974	0.745	1e-136
224074291	371	predicted protein [Populus trichocarpa]	0.982	0.924	0.713	1e-135
224138948	372	predicted protein [Populus trichocarpa]	0.968	0.908	0.689	1e-133
449520671	350	PREDICTED: zinc finger CCCH domain-conta	0.954	0.951	0.705	1e-128
449436820	339	PREDICTED: zinc finger CCCH domain-conta	0.928	0.955	0.692	1e-127
359474468	372	PREDICTED: zinc finger CCCH domain-conta	0.928	0.870	0.696	1e-127
356495861	368	PREDICTED: zinc finger CCCH domain-conta	0.974	0.923	0.657	1e-122
357516999	376	Zinc finger CCCH domain-containing prote	0.977	0.906	0.619	1e-116
357144913	362	PREDICTED: zinc finger CCCH domain-conta	0.962	0.928	0.568	1e-109
297846208	385	zinc finger (CCCH-type) family protein [	0.974	0.883	0.579	1e-107

>gi|255573451|ref|XP_002527651.1| nucleic acid binding protein, putative [Ricinus communis] gi|223532956|gb|EEF34722.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/358 (74%), Positives = 295/358 (82%), Gaps = 18/358 (5%)

Query: 1   MSYSRDSSENVVHIIVGNGAPEHWIPNPNDSSV-WATEDDY-----PDDPPSISNSNCQS 54
           M YSRD   NVVH+I G G P++W+PN  DS V WATEDDY      D P   + SN   
Sbjct: 1   MDYSRD---NVVHVIPGTG-PDNWLPNSADSGVVWATEDDYQMWNNSDGPNDNTPSNSSF 56

Query: 55  QTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           Q+RS SE PPNKKS+N SQ+++SK K+IGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 57  QSRSGSE-PPNKKSKNNSQELSSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 114

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPPPNWQEIVAAHEEER +  E+ REEFQIPSI    F+ E+QRSYKGRHCKKFYTEE
Sbjct: 115 LRRPPPNWQEIVAAHEEERGNVMEV-REEFQIPSI--GGFSGESQRSYKGRHCKKFYTEE 171

Query: 175 GCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSN---VKPSNWKT 231
           GCPYG+NCTFLHDEQSKNRESVAISLGPGGYGGGG   A +GN  G  +   VKPSNWKT
Sbjct: 172 GCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGGGGGAGSGNGSGGGSAGNVKPSNWKT 231

Query: 232 RICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPV 291
           RICNKWELTGYCPFGNKCHFAHG  ELHR+GGGL+ESE  D S+ P+D+K  GV SKTP 
Sbjct: 232 RICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMESEGKDPSSVPADTKQGGVLSKTPA 291

Query: 292 DTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE 349
           D VVASV SVPH+DVYH+GVPSQR SI++QRPGQRSH+KWKGPDKISRIYGDWIDDIE
Sbjct: 292 DIVVASVASVPHSDVYHLGVPSQRPSILMQRPGQRSHQKWKGPDKISRIYGDWIDDIE 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074291|ref|XP_002304341.1| predicted protein [Populus trichocarpa] gi|222841773|gb|EEE79320.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 269/377 (71%), Positives = 299/377 (79%), Gaps = 34/377 (9%)

Query: 1   MSYSRD-SSENVVHIIVGNGAPEHWIPNPNDSS-VWATEDDYPD-------DPPSISNSN 51
           M  +RD S  NVVH+I  +  PE WI N +DSS VWATEDDY D       +  + SNSN
Sbjct: 1   MDCNRDFSGGNVVHVIPISD-PESWILNSSDSSSVWATEDDYRDWNNSDILNDNASSNSN 59

Query: 52  CQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHS 111
            QS TRS SE PPNKKS+N SQ++NSK K+IGKMFFKTKLCCKFR GTCPYITNCNFAHS
Sbjct: 60  YQSSTRSGSE-PPNKKSKNNSQELNSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFAHS 117

Query: 112 IEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFY 171
           IEELRRPPPNWQ+IVAAHEEE+ +T ++ REEFQIPSIV   F  ETQRSYKGRHCKKFY
Sbjct: 118 IEELRRPPPNWQDIVAAHEEEKGNTVDV-REEFQIPSIVG--FGAETQRSYKGRHCKKFY 174

Query: 172 TEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNI------------ 219
           TEEGCPYG+NCTFLHDEQSKNRESVAISLGPGGYGGG  A A AG  +            
Sbjct: 175 TEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGSGAGAGAGVGVGVGVGGGGGGEG 234

Query: 220 -------GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENND 272
                     NVKPSNWKTRICNKWELTGYCPFGNKCHFAHG+ ELHR+GGGLV++E  D
Sbjct: 235 GGGNAGSNAVNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGVGELHRYGGGLVDTEAKD 294

Query: 273 SSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWK 332
           SS+ P +SK  G+PSKTP +T VASVTSVPH+DVYH+GV SQRSSI++QR GQR+HEKWK
Sbjct: 295 SSSVPVESKQGGMPSKTPPETAVASVTSVPHSDVYHLGVSSQRSSILIQRSGQRTHEKWK 354

Query: 333 GPDKISRIYGDWIDDIE 349
           GPDKISRIYGDWIDDIE
Sbjct: 355 GPDKISRIYGDWIDDIE 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138948|ref|XP_002326730.1| predicted protein [Populus trichocarpa] gi|222834052|gb|EEE72529.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/383 (68%), Positives = 293/383 (76%), Gaps = 45/383 (11%)

Query: 1   MSYSRDSSENVVHIIVGNGAPEHWIPNPNDS-SVWATEDDYP---------DDPPSISNS 50
           M Y+RD S   V  I G   P+ WI N +DS SVWATEDDY          D+ PS  NS
Sbjct: 1   MDYNRDFSGVNVIPITG---PDSWISNSSDSNSVWATEDDYRFWNNSDGLNDNTPS--NS 55

Query: 51  NCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAH 110
           N QS    +  +PPNKKS+N SQ++NSK K+IGKMFFKTKLCCKFR GTCPYITNCNFAH
Sbjct: 56  NYQSSETLSGSEPPNKKSKNNSQELNSK-KSIGKMFFKTKLCCKFRAGTCPYITNCNFAH 114

Query: 111 SIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKF 170
           S+EELRRPPPNWQEIVAAHEEER +T +  REEFQIPSIV   F  ETQRSYKGRHCKKF
Sbjct: 115 SMEELRRPPPNWQEIVAAHEEERGNTVDA-REEFQIPSIVG--FGAETQRSYKGRHCKKF 171

Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA---------------- 214
           YTEEGCPYG+NCTFLHDEQSKNRESVAISLGPGGYGGGG                     
Sbjct: 172 YTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGGGGGGGGGGGGGG 231

Query: 215 --------AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLV 266
                   AG+N    NVKPSNWKTRICNKWELTGYCPFGNKCHFAHG+ ELHR+GGGLV
Sbjct: 232 GGGGGGGNAGSN--AVNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGVGELHRYGGGLV 289

Query: 267 ESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQR 326
           E +  DS+  P +SK  GVPSKTP +TVVASVTSVP++DVYH+GVPSQ+SSI++QRPGQR
Sbjct: 290 EMDAKDSAFVPVESKQGGVPSKTPPETVVASVTSVPNSDVYHLGVPSQKSSILIQRPGQR 349

Query: 327 SHEKWKGPDKISRIYGDWIDDIE 349
           +H+KWKGPDKISRIYGDWIDDIE
Sbjct: 350 THQKWKGPDKISRIYGDWIDDIE 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520671|ref|XP_004167357.1| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Cucumis sativus]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/357 (70%), Positives = 279/357 (78%), Gaps = 24/357 (6%)

Query: 7   SSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYP----------DDPPSISNSNCQSQT 56
           S  NVVH+I G  + E+W        VWATED+Y           D P + S    QSQ+
Sbjct: 4   SGGNVVHVISGT-SNENW-----PGEVWATEDEYRAWNNGGDGSVDTPSNSSYDQRQSQS 57

Query: 57  RSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           RS SE PPNKKSR+ SQDV S  +SKAIGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 58  RSGSE-PPNKKSRS-SQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 115

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPP NWQEIVAAHEEE+A  +E PREEFQIPS+ ++NF  E+QRSYKGRHCKKFYTEE
Sbjct: 116 LRRPPHNWQEIVAAHEEEKAVLSE-PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEE 174

Query: 175 GCPYGENCTFLHDEQSKNRESVAISL--GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTR 232
           GCPYG++CTFLHDEQSKNRESVAISL  G    GGGG      G +   SN KPSNWKTR
Sbjct: 175 GCPYGDSCTFLHDEQSKNRESVAISLGPGGYSGGGGGGGGGGGGGSGNGSNTKPSNWKTR 234

Query: 233 ICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVD 292
           ICNKWELTGYCPFGNKCHFAHG  ELHR+GGGL+E+E  DSSAAP D K  GV  K P D
Sbjct: 235 ICNKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDSSAAPPDLKQ-GVLPKAPGD 293

Query: 293 TVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE 349
           T+VASV S PH+DVYH+ VPSQRS+IV+QRPGQR+H+KWKGPDKISRIYGDWIDDIE
Sbjct: 294 TLVASVPSAPHSDVYHVVVPSQRSTIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436820|ref|XP_004136190.1| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Cucumis sativus]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/355 (69%), Positives = 273/355 (76%), Gaps = 31/355 (8%)

Query: 7   SSENVVHIIVGNGAPEHWIPNPNDSSVWATEDDYP----------DDPPSISNSNCQSQT 56
           S  NVVH+I G  + E+W        VWATED+Y           D P + S    QSQ+
Sbjct: 4   SGGNVVHVISGT-SNENW-----PGEVWATEDEYRAWNNGGDGSVDTPSNSSYDQRQSQS 57

Query: 57  RSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
           RS SE PPNKKSR+ SQDV S  +SKAIGKMFFKTKLCCKFR GTCPYITNCNFAHSIEE
Sbjct: 58  RSGSE-PPNKKSRS-SQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEE 115

Query: 115 LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEE 174
           LRRPP NWQEIVAAHEEE+A  +E PREEFQIPS+ ++NF  E+QRSYKGRHCKKFYTEE
Sbjct: 116 LRRPPHNWQEIVAAHEEEKAVLSE-PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEE 174

Query: 175 GCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRIC 234
           GCPYG++CTFLHDEQSKNRESVAIS                G +   SN KPSNWKTRIC
Sbjct: 175 GCPYGDSCTFLHDEQSKNRESVAISF---------GGGGGGGGSGNGSNTKPSNWKTRIC 225

Query: 235 NKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDTV 294
           NKWELTGYCPFGNKCHFAHG  ELHR+GGGL+E+E  DSSAAP D K  GV  K P DT+
Sbjct: 226 NKWELTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDSSAAPPDLKQ-GVLPKAPGDTL 284

Query: 295 VASVTSVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE 349
           VASV S PH+DVYH+ VPSQRS+IV+QRPGQR+H+KWKGPDKISRIYGDWIDDIE
Sbjct: 285 VASVPSAPHSDVYHVVVPSQRSTIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474468|ref|XP_002277716.2| PREDICTED: zinc finger CCCH domain-containing protein 12-like [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/359 (69%), Positives = 278/359 (77%), Gaps = 35/359 (9%)

Query: 22  EHWIPNPNDSSVWATEDDYP-------DDPPSISN-SNCQSQTRSNSEQPPNKKSRNGSQ 73
           ++WIP  +D  VWATEDDY         D PS SN    QSQ+RS SE PPNKKSRN SQ
Sbjct: 18  DNWIPGSSDQLVWATEDDYAVWNGDGSGDTPSNSNYEGRQSQSRSGSE-PPNKKSRN-SQ 75

Query: 74  DVNS--------------KSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPP 119
            V+S              +SKAIGKMFFKTKLCCKFR GTCPY+TNCNFAHSI+ELRRPP
Sbjct: 76  VVDSQGNVFGRDRDLPSNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIQELRRPP 135

Query: 120 PNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYG 179
           PNWQEIVAAH+EER  ++E PREEFQIPSI S++F VETQRSYKGRHCKKFYT+EGCPYG
Sbjct: 136 PNWQEIVAAHDEERGVSSE-PREEFQIPSIGSSSFGVETQRSYKGRHCKKFYTDEGCPYG 194

Query: 180 ENCTFLHDEQSKNRESVAISL---GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNK 236
           +NCTFLHDEQSK RESVAISL     GG GGGG      G     SN+KPSNWKTRICNK
Sbjct: 195 DNCTFLHDEQSKARESVAISLGPGAGGGGGGGGGGGGGGGGGGSGSNIKPSNWKTRICNK 254

Query: 237 WELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTPVDTVVA 296
           WELTGYCPFG+KCHFAHG+ ELHR+GGGLV+ E+ DS++AP DSK  GVPSK P D VVA
Sbjct: 255 WELTGYCPFGSKCHFAHGMGELHRYGGGLVD-ESRDSTSAPPDSKQGGVPSKPPSDAVVA 313

Query: 297 SVT------SVPHADVYHMGVPSQRSSIVVQRPGQRSHEKWKGPDKISRIYGDWIDDIE 349
            VT      SVPH+DVYH GVPSQR + V+QRPGQR+ +KWKGPDKISRIYGDWIDDIE
Sbjct: 314 FVTSVPLVASVPHSDVYHAGVPSQRPTSVIQRPGQRTQKKWKGPDKISRIYGDWIDDIE 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495861|ref|XP_003516789.1| PREDICTED: zinc finger CCCH domain-containing protein 56-like [Glycine max]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/377 (65%), Positives = 280/377 (74%), Gaps = 37/377 (9%)

Query: 1   MSYSRDSSENVVHIIVGNGAP----EHWIPNPNDSSVWATEDDYP---------DDPPSI 47
           M ++RD   NVV II G G      E W     D + WATED+Y          D   + 
Sbjct: 1   MDFARDG--NVVQIITGGGGGGGGGESW---SGDQADWATEDEYRFWNNNNSGGDSETTP 55

Query: 48  SNSNCQSQTRSNSEQPPNKKSRNGSQDVNS--KSKAIGKMFFKTKLCCKFRNGTCPYITN 105
           SNSN + +    S +PP+KKSRN SQ+ +S  +SKAIGKMFFKTKLCCKFR GTCPYITN
Sbjct: 56  SNSNYEGR----SSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITN 111

Query: 106 CNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVET-QRSYKG 164
           CNFAHSIEELRRPPPNWQEIVAAHEEE+A   E PREEFQIP++ ST F+ E  QRSYKG
Sbjct: 112 CNFAHSIEELRRPPPNWQEIVAAHEEEKAVMIEPPREEFQIPTVGSTTFSGEMMQRSYKG 171

Query: 165 RHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNV 224
           RHCKKFYTEEGCPYG++CTFLHDEQSKNRESVAISLGPGGYGGGG      G      N 
Sbjct: 172 RHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGVGGGASGGNG 231

Query: 225 -----------KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDS 273
                      KPSNWKTRICNKWE+TGYCPFGNKCHFAHG  ELHR+GGGL+E EN D+
Sbjct: 232 GANAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDA 291

Query: 274 SAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQR-SSIVVQRPGQRSHEKWK 332
           ++A +     GVPSK   D VVA+VT V H+DVYH+GVPSQR SS+V+QRPGQR+H+KWK
Sbjct: 292 ASAVAGDTNKGVPSKASADNVVAAVTLVAHSDVYHIGVPSQRPSSMVIQRPGQRAHQKWK 351

Query: 333 GPDKISRIYGDWIDDIE 349
           GPDKISRIYGDWIDDIE
Sbjct: 352 GPDKISRIYGDWIDDIE 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516999|ref|XP_003628788.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355522810|gb|AET03264.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/384 (61%), Positives = 273/384 (71%), Gaps = 43/384 (11%)

Query: 1   MSYSRDSSENVVHIIV--GNGAPEHWIPNPNDSSVWATEDDYP--DDPPSISNSNCQSQT 56
           M Y+RD   NVV II   G GA + W     D + WATED+Y   +   +   +   S +
Sbjct: 1   MDYNRDG--NVVQIITTGGGGAADSW---STDQADWATEDEYRYWNGNDAGGETTPSSNS 55

Query: 57  RSNSEQPPNKKSRNGSQDVN--------SKSKAIGKMFFKTKLCCKFRNGTCPYITNCNF 108
           R+ SE PP+KKSR+ SQD          +++KAIGKMFFKTKLCCKFR GTCPYITNCNF
Sbjct: 56  RAGSE-PPSKKSRSNSQDGGGGGSGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNF 114

Query: 109 AHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ--RSYKGRH 166
           AHS+EELRRPP NWQEIVAAHEEER S  E PREEFQIP++ S+ F  E+   RSYKGRH
Sbjct: 115 AHSVEELRRPPENWQEIVAAHEEER-SVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRH 173

Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVS---- 222
           CKKFYTEEGCPYG++CTFLHDEQSKNRESVAISLGPGGYGGGG      G ++G      
Sbjct: 174 CKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSGVGSG 233

Query: 223 -----------------NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGL 265
                            N+KPSNWKTRICNKWE+TGYCPFGNKCHFAHG  ELHR+GGGL
Sbjct: 234 SGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGL 293

Query: 266 VESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQ 325
           +E E+ D  +  +     GVPSKT  D VVAS   +  +DVYH+GVPSQR SIV QRPGQ
Sbjct: 294 MEGESRDGVSVVASDTKQGVPSKTHADNVVASNPPI-GSDVYHLGVPSQRPSIVSQRPGQ 352

Query: 326 RSHEKWKGPDKISRIYGDWIDDIE 349
           R+H+KWKGPDKISRIYGDWIDD E
Sbjct: 353 RAHQKWKGPDKISRIYGDWIDDFE 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144913|ref|XP_003573458.1| PREDICTED: zinc finger CCCH domain-containing protein 56-like [Brachypodium distachyon]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/375 (56%), Positives = 253/375 (67%), Gaps = 39/375 (10%)

Query: 1   MSYSRDSSENVVHIIVGNGAPEHWIPNP----NDSSVWATEDDYPD---DPPSIS----- 48
           M YS     N +HII     PE W+ +      DS +WATEDDY     +P         
Sbjct: 1   MDYS-----NAIHIIPDAAGPEAWVNSAVLPGGDSGIWATEDDYSQWNAEPGLTGGGYGG 55

Query: 49  -NSNCQSQTRSNSEQPP-NKKSRNGSQDVNS-------KSKAIGKMFFKTKLCCKFRNGT 99
             ++ Q Q+RS SEQPP  KK R G             KS+AIGKMFFKTKLCCKFR GT
Sbjct: 56  DRNSSQPQSRSGSEQPPPGKKPRGGPSGGGGGDAGSMSKSRAIGKMFFKTKLCCKFRAGT 115

Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVE-- 157
           CPY+TNCNFAH +EELR+PPPNWQEIVAAHEE         REE QIP + S++ A    
Sbjct: 116 CPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEQ-----REEHQIPIMTSSSVAPSES 170

Query: 158 -TQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAG 216
            + R+YKGRHCKKFYTEEGCPYG+ CTFLHDEQSK RESVAISL P   GG   +  AA 
Sbjct: 171 VSGRAYKGRHCKKFYTEEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGSYNSPTAAA 230

Query: 217 NNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAA 276
           N  G + +KPSNWKTRICNKWE+TGYCPFG+KCHFAHG  ELH++GGGLV+ E  D ++ 
Sbjct: 231 N--GPTILKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDVEGRDIAST 288

Query: 277 PSDSKLVGVPSKTPVDTVVASVTSVPHADVYHMGVPSQRSSIVVQRPGQ--RSHEKWKGP 334
           P DSK   + +K P +T  AS  + PH+DVYH+G+ SQRS++  QR GQ  R  +KWKGP
Sbjct: 289 P-DSKQAALSAKAPAETTPASTAAPPHSDVYHLGIQSQRSTMTSQRSGQLPRPIQKWKGP 347

Query: 335 DKISRIYGDWIDDIE 349
           DKISRIYGDWID+ +
Sbjct: 348 DKISRIYGDWIDETD 362

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846208|ref|XP_002890985.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297336827|gb|EFH67244.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/388 (57%), Positives = 264/388 (68%), Gaps = 48/388 (12%)

Query: 3   YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
           + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY +   +++  N    T  ++ 
Sbjct: 5   HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-NRAWAVNPDN----TSGDNN 59

Query: 62  QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
            PPNKK+R          +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 60  GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 119

Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
           ELRRPPPNWQEIVAAHEEER+        +  E+PREEFQIPS+VS+    E+ RS+KGR
Sbjct: 120 ELRRPPPNWQEIVAAHEEERSGGMGTPTVAVVELPREEFQIPSLVSS--TAESGRSFKGR 177

Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGG---------------- 209
           HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAISLGPGGYG GG                
Sbjct: 178 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGGSGGGSGGGGGGS 237

Query: 210 -----AAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFGGG 264
                      G+  G++ +KPSNWKTRICNKWE+TGYCPFG KCHFAHG  ELHRFGGG
Sbjct: 238 SSNVVVLGGGGGSGSGINILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 297

Query: 265 LVESENNDSSAAPSDSKLVGVPSKTPVDTVVASVTSVP-HADV-YHMGVPSQR-SSIVVQ 321
           LVE E  D  +   D+K      K   DT       VP HAD  YH GV  QR SS V Q
Sbjct: 298 LVEEEGKDGGSPNPDTKQTVQNPKGHADTTTLLSPGVPHHADAGYHSGVALQRASSAVTQ 357

Query: 322 RPGQRSHEKWKGPDKISRIYGDWIDDIE 349
           +PG R+H+KWKGP KISRIYGDWIDDIE
Sbjct: 358 KPGVRTHQKWKGPAKISRIYGDWIDDIE 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2028306	384	AT1G32360 [Arabidopsis thalian	0.550	0.5	0.616	3e-110
TAIR|locus:2090669	386	AT3G19360 [Arabidopsis thalian	0.332	0.300	0.425	4.7e-44
TAIR|locus:2062476	252	AT2G35430 [Arabidopsis thalian	0.618	0.857	0.406	7.4e-34
TAIR|locus:2170169	240	AT5G06770 [Arabidopsis thalian	0.123	0.179	0.489	2.7e-10
SGD|S000004126	285	TIS11 "mRNA-binding protein ex	0.108	0.133	0.45	1.4e-09
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.111	0.221	0.487	0.00043
TAIR|locus:2099292	248	AT3G12130 [Arabidopsis thalian	0.100	0.141	0.527	1.7e-09
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.111	0.188	0.487	0.00089
MGI|MGI:107946	338	Zfp36l1 "zinc finger protein 3	0.183	0.189	0.402	7e-09
CGD|CAL0004295	203	orf19.5334 [Candida albicans (	0.120	0.206	0.422	7e-09

TAIR|locus:2028306 AT1G32360 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 132/214 (61%), Positives = 157/214 (73%)

Query:     3 YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDY-------PDDPPSISNSNCQS 54
             + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY       PD+    +N     
Sbjct:     4 HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDYNRAWAMNPDNTSGDNNGPPNK 63

Query:    55 QTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEE 114
             +TR +    P+  S   +   ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++EE
Sbjct:    64 KTRGS----PSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEE 119

Query:   115 LRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGRH 166
             LRRPPPNWQEIVAAHEEER+        S  EIPREEFQIPS+VS+    E+ RS+KGRH
Sbjct:   120 LRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESGRSFKGRH 177

Query:   167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
             CKKFYTEEGCPYGE+CTFLHDE S+NRESVAISL
Sbjct:   178 CKKFYTEEGCPYGESCTFLHDEASRNRESVAISL 211

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2090669 AT3G19360 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 51/120 (42%), Positives = 72/120 (60%)

Query:    79 SKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERA 134
             +K    +F+KT++C KFR GTC     CNFAH IE+LR+PP NWQEIV    A  + ER 
Sbjct:    97 NKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERE 156

Query:   135 STNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRE 194
                E  RE   +  +V+ N+  + +   + + C+KF   E CPYG+ C F+H++ SK RE
Sbjct:   157 RERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE 216

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2062476 AT2G35430 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 98/241 (40%), Positives = 125/241 (51%)

Query:   119 PPNWQEIVAAHEEERASTNEIPREEFQIPSIVS-TNFAVETQRSY-KGRHCKKFYTEEGC 176
             P +    V A E++ +    I  +  + PS  + ++ + E  +S+ K + C KF     C
Sbjct:    27 PNSGDSSVWATEDDYSRVWAINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGT-C 85

Query:   177 PYG-ENCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXNNIGV-SNV----KPSNWK 230
             PY   +C F H  +                            ++G   NV    K  NWK
Sbjct:    86 PYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLGPRGNVAQTLKSPNWK 145

Query:   231 TRICNKWELTGYCPFGNKCHFAHGIQELHRFGGGLVESENNDSSAAPSDSKLVGVPSKTP 290
             TRICNKW+ TGYCPFG+ CHFAHG  ELH FGGGLVE E    ++A  D+K  G      
Sbjct:   146 TRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQRG-----Q 200

Query:   291 VDTVVASVTSVPHADVYHMGVPSQR-SSIVVQRP-GQRSHEKWKGPDKISRIYGDWIDDI 348
             VDTV + V+  P       GV SQR SS V Q+P G R+  KWKGPDKISR+YGDWIDDI
Sbjct:   201 VDTVTSLVS--P-------GVSSQRTSSAVTQKPNGVRTQRKWKGPDKISRVYGDWIDDI 251

Query:   349 E 349
             E
Sbjct:   252 E 252

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2170169 AT5G06770 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query:   219 IGVSNVKP---SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
             IG    KP   SN+KT+IC+++   G C +G++CHFAHG  EL R G
Sbjct:   193 IGGPEGKPHPGSNYKTKICDRYS-KGNCTYGDRCHFAHGESELRRSG 238

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

SGD|S000004126 TIS11 "mRNA-binding protein expressed during iron starvation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 103 (41.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query:   217 NNIGVSNVKPS--NWKTRICNKWELTGYCPFGNKCHFAHG 254
             + +G   VK S  N++T+ C  WE  GYCP+G +C F HG
Sbjct:   194 HGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHG 233

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 0.00043, P = 0.00043
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query:   220 GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
             G   V  S +KT +C  +E  G C +G+KC FAHGI EL
Sbjct:    84 GGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 122

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

TAIR|locus:2099292 AT3G12130 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query:   227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRFG 262
             SN+KT+IC ++   G C FG++CHFAHG  EL + G
Sbjct:   212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSG 246

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 0.00089, P = 0.00089
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query:   220 GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
             G   V  S +KT +C  +E  G C +G+KC FAHGI EL
Sbjct:   112 GGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 150

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
 Identities = 31/77 (40%), Positives = 40/77 (51%)

Query:    45 PSISNSNCQSQTRSNSEQP----PNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
             PS+S+ + + + RS SE      P +K + GS  VNS         +KT+LC  F  NG 
Sbjct:    77 PSLSSRDSRFRDRSFSEGGERLLPTQK-QPGSGQVNSSR-------YKTELCRPFEENGA 128

Query:   100 CPYITNCNFAHSIEELR 116
             C Y   C FAH I ELR
Sbjct:   129 CKYGDKCQFAHGIHELR 145

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0004295 orf19.5334 [Candida albicans (taxid:5476)]

 Score = 105 (42.0 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query:    82 IGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRP--PPNWQ 123
             I    +KT+LC  F + G CPY   C FAH   EL+    PP W+
Sbjct:   134 INTQLYKTELCASFMKTGVCPYANKCQFAHGENELKHVERPPKWR 178

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84UQ3	C3H56_ORYSJ	No assigned EC number	0.5594	0.9541	0.9073	yes	no
Q9LQM3	C3H12_ARATH	No assigned EC number	0.5824	0.9742	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030660 hypothetical protein (371 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	1e-08
smart00356	27	smart00356, ZnF_C3H1, zinc finger	4e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	5e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	7e-05
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	3e-04

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
           +KT +C  +  TG C +G++C FAHG
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHG 254
            +KT +C  ++  GYCP G++C FAH 
Sbjct: 1   KYKTELCKFFK-RGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 87  FKTKLCCKFRNGTCPYITNCNFAHS 111
           +KT+LC  F+ G CP    C FAH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 87  FKTKLCCKF-RNGTCPYITNCNFAHS 111
           +KT+LC  F R GTC Y   C FAH 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 54/251 (21%), Positives = 83/251 (33%), Gaps = 52/251 (20%)

Query: 27  NPNDSSVWATEDDYPDDPPSISNSN----------CQSQTRSNSEQPPNKKSRNGSQDVN 76
             + S+   +  +YP   P  SN+N           +S T     + P+K     S+ ++
Sbjct: 84  AEDSSASSNSPQNYPW-SPRGSNANKPYGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAIS 142

Query: 77  SKSKAIGKMFFKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERAS 135
           S ++   K  +KT+    F N G  PY   C F          P     +    + +  S
Sbjct: 143 SLAQTHPK--YKTESLEVFINPGYVPYSKRCCFISL-------PLTDINLQPLSQRKPKS 193

Query: 136 TNE-----IPREEFQIPSIVSTNFAVETQRS-YKGRH--CKKFYTEEGCPYGENCTFLHD 187
                   + +E    P         E  +  YK     C+ F  +  CPY  +      
Sbjct: 194 GKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQ- 252

Query: 188 EQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN 247
                                  A    G N   S  K  N++T  C  WE +GYCP+G 
Sbjct: 253 ----------------------FACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGL 290

Query: 248 KCHFAHGIQEL 258
           +C F HG    
Sbjct: 291 RCCFKHGDDSD 301

Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	99.55
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.52
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.24
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.11
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.98
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.8
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.77
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.5
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.39
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.27
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.14
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.04
smart00356	27	ZnF_C3H1 zinc finger.	98.03
KOG1040	325	consensus Polyadenylation factor I complex, subuni	97.96
smart00356	27	ZnF_C3H1 zinc finger.	97.87
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.77
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.6
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.53
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.49
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.33
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.89
KOG1763	343	consensus Uncharacterized conserved protein, conta	96.86
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.6
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.55
KOG4791	667	consensus Uncharacterized conserved protein [Funct	96.09
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.95
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.61
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.55
KOG1763	343	consensus Uncharacterized conserved protein, conta	94.9
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	94.76
COG5152	259	Uncharacterized conserved protein, contains RING a	94.48
COG5152	259	Uncharacterized conserved protein, contains RING a	93.92
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	92.67
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	87.92
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	84.2
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	83.85
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	82.62

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.55  E-value=8e-15  Score=148.08  Aligned_cols=102  Identities=32%  Similarity=0.688  Sum_probs=85.9

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccc-cCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccc
Q 018874           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEE-LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYK  163 (349)
Q Consensus        85 ~~yKTklC~~f~~G~C~~G~~C~FaH~~ee-lR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yK  163 (349)
                      .-|||+.|..-   .|..+..|.|+|.-+. -|+.|                     |+.                 .|.
T Consensus       197 y~fKir~C~R~---~shDwteCPf~HpgEkARRRDP---------------------Rky-----------------hYs  235 (528)
T KOG1595|consen  197 YSFKIRRCSRP---RSHDWTECPFAHPGEKARRRDP---------------------RKY-----------------HYS  235 (528)
T ss_pred             EeeeecccCCc---cCCCcccCCccCCCcccccCCc---------------------ccc-----------------ccc
Confidence            34899999984   9999999999995544 44433                     322                 378


Q ss_pred             cccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccC
Q 018874          164 GRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYC  243 (349)
Q Consensus       164 t~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C  243 (349)
                      .++|+.|.+ |.|+.||.|.|+|+..|                               .++||..|||++|+.   .|+|
T Consensus       236 ~tpCPefrk-G~C~rGD~CEyaHgvfE-------------------------------cwLHPa~YRT~~CkD---g~~C  280 (528)
T KOG1595|consen  236 STPCPEFRK-GSCERGDSCEYAHGVFE-------------------------------CWLHPARYRTRKCKD---GGYC  280 (528)
T ss_pred             CccCccccc-CCCCCCCccccccceeh-------------------------------hhcCHHHhccccccC---CCCC
Confidence            889988765 99999999999999998                               679999999999985   5899


Q ss_pred             CCCCCCCCCCCccccccCCC
Q 018874          244 PFGNKCHFAHGIQELHRFGG  263 (349)
Q Consensus       244 ~~G~~C~FaHg~~ELr~~~~  263 (349)
                      ++ .-|.|||..+|||....
T Consensus       281 ~R-rvCfFAH~~eqLR~l~~  299 (528)
T KOG1595|consen  281 PR-RVCFFAHSPEQLRPLPP  299 (528)
T ss_pred             cc-ceEeeecChHHhcccCC
Confidence            99 99999999999998764

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.52  E-value=1.1e-14  Score=142.12  Aligned_cols=119  Identities=30%  Similarity=0.643  Sum_probs=92.2

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874           90 KLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK  168 (349)
Q Consensus        90 klC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~  168 (349)
                      ..|.++. .+.|.++..|+|.|...+++..+..                   +           .........+|+.+|.
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-------------------~-----------~~~~~~p~~~kt~lc~  136 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-------------------R-----------SRGERKPERYKTPLCR  136 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCcc-------------------c-----------cccccCcccccCCcce
Confidence            7899998 7999999999999998565543210                   0           0011123468999999


Q ss_pred             cccccCCCCC-CCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCCCC
Q 018874          169 KFYTEEGCPY-GENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN  247 (349)
Q Consensus       169 ~f~~~G~C~~-G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~G~  247 (349)
                      .|...|.|+| |++|+|+|...+++...                       .......+..|||++|.+|+++|+|+||.
T Consensus       137 ~~~~~g~c~y~ge~crfah~~~e~r~~~-----------------------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~  193 (332)
T KOG1677|consen  137 SFRKSGTCKYRGEQCRFAHGLEELRLPS-----------------------SENQVGNPPKYKTKLCPKFQKTGLCKYGS  193 (332)
T ss_pred             eeecCccccccCchhhhcCCcccccccc-----------------------cchhhcCCCCCCCcCCCccccCCCCCCCC
Confidence            9999999999 99999999998865321                       00122456789999999999999999999


Q ss_pred             CCCCCCCccccccC
Q 018874          248 KCHFAHGIQELHRF  261 (349)
Q Consensus       248 ~C~FaHg~~ELr~~  261 (349)
                      +|+|+|+..+++..
T Consensus       194 rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  194 RCRFIHGEPEDRAS  207 (332)
T ss_pred             cCeecCCCcccccc
Confidence            99999999887653

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.24  E-value=4.6e-12  Score=123.78  Aligned_cols=82  Identities=39%  Similarity=0.755  Sum_probs=66.3

Q ss_pred             ccccCccccccccccccc-cCCCCC-CCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccc
Q 018874           79 SKAIGKMFFKTKLCCKFR-NGTCPY-ITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAV  156 (349)
Q Consensus        79 ~~~~~~~~yKTklC~~f~-~G~C~~-G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~  156 (349)
                      ........|||.+|..|. .|.|+| |+.|+|+|+.+++|.+..  .  .                            ..
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~--~--~----------------------------~~  169 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS--E--N----------------------------QV  169 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc--c--h----------------------------hh
Confidence            344556679999999999 799999 999999999999996530  0  0                            00


Q ss_pred             ccccccccccCccccccCCCCCCCCCCCCCCccccc
Q 018874          157 ETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKN  192 (349)
Q Consensus       157 ~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~  192 (349)
                      ....+|||++|.+|..+|.|+||.+|+|+|...+.+
T Consensus       170 ~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  170 GNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             cCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            113579999999999999999999999999988753

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.11  E-value=5.6e-11  Score=113.02  Aligned_cols=116  Identities=27%  Similarity=0.536  Sum_probs=92.8

Q ss_pred             ccCcccccc--ccccccc-cCCCCC---CCCCCCC---CCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccc
Q 018874           81 AIGKMFFKT--KLCCKFR-NGTCPY---ITNCNFA---HSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVS  151 (349)
Q Consensus        81 ~~~~~~yKT--klC~~f~-~G~C~~---G~~C~Fa---H~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s  151 (349)
                      ..++..|||  .||.-|. .|+|++   |+.|.|+   |+..++...-                                
T Consensus       220 e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------------------------------  267 (351)
T COG5063         220 EQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------------------------------  267 (351)
T ss_pred             hccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccccc--------------------------------
Confidence            355677899  9999998 799999   9999999   9987765421                                


Q ss_pred             cccccccccccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccc
Q 018874          152 TNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT  231 (349)
Q Consensus       152 ~~~~~~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt  231 (349)
                            ....|+|++|..|...|.|+||.+|.|.|+.+++...-.                           ...-.|+.
T Consensus       268 ------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~---------------------------~~~~~y~~  314 (351)
T COG5063         268 ------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYE---------------------------EASLGYLD  314 (351)
T ss_pred             ------cccccccCCccchhhcccCccccccccccCChhhccccc---------------------------cccccccc
Confidence                  023589999999999999999999999999988643211                           11124666


Q ss_pred             cccccccccccCCCCCCCCCCCCccccccC
Q 018874          232 RICNKWELTGYCPFGNKCHFAHGIQELHRF  261 (349)
Q Consensus       232 ~lC~~f~~~G~C~~G~~C~FaHg~~ELr~~  261 (349)
                      ..|+-+++.|.|++|.+|.|.|...-|...
T Consensus       315 ~~crt~~~~g~~p~g~~~c~~~dkkn~~~s  344 (351)
T COG5063         315 GPCRTRAKGGAFPSGGAVCKSFDKKNLDFS  344 (351)
T ss_pred             cccccccccCccCCCCchhhccccchhhhh
Confidence            789999999999999999999998766543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.98  E-value=4.8e-10  Score=109.36  Aligned_cols=113  Identities=24%  Similarity=0.495  Sum_probs=78.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874           85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (349)
Q Consensus        85 ~~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt  164 (349)
                      ..+++.+|++|+.|.|+.|+.|.|+|.. +|.                                              ++
T Consensus        73 ~~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~----------------------------------------------k~  105 (325)
T KOG1040|consen   73 DSRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT----------------------------------------------KM  105 (325)
T ss_pred             ccCCceeehhhhhhhhhccCcCcchhhh-hhc----------------------------------------------cc
Confidence            3678899999999999999999999977 432                                              23


Q ss_pred             ccCccccccCCCCCCCCCCCCCCccccc-cccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccC
Q 018874          165 RHCKKFYTEEGCPYGENCTFLHDEQSKN-RESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYC  243 (349)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~-res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C  243 (349)
                      ..|.+|+..|.|..+..|.|.|...+-. .+...+..               +--..+....-...+..+|+.|. .|.|
T Consensus       106 rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~---------------g~c~~g~~c~~~h~~~~~c~~y~-~gfC  169 (325)
T KOG1040|consen  106 RECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKE---------------GFCRGGPSCKKRHERKVLCPPYN-AGFC  169 (325)
T ss_pred             ccccccccccccccccCCcccCCChhhhhhccchhhh---------------ccCCCcchhhhhhhcccCCCchh-hhhc
Confidence            3677888889999999999999884211 11000100               00011122222333447899998 8999


Q ss_pred             CCCCC-CCCCCCcccccc
Q 018874          244 PFGNK-CHFAHGIQELHR  260 (349)
Q Consensus       244 ~~G~~-C~FaHg~~ELr~  260 (349)
                      +.|.. |-+.|+...+..
T Consensus       170 ~~g~q~c~~~hp~~~~~~  187 (325)
T KOG1040|consen  170 PKGPQRCDMLHPEFQQPP  187 (325)
T ss_pred             cCCCCcccccCCCCCCCh
Confidence            99998 999999877655

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.80  E-value=4.5e-09  Score=100.16  Aligned_cols=72  Identities=36%  Similarity=0.831  Sum_probs=60.7

Q ss_pred             ccccc--ccCccccccCCCCC---CCCCCCC---CCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccc
Q 018874          160 RSYKG--RHCKKFYTEEGCPY---GENCTFL---HDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKT  231 (349)
Q Consensus       160 ~~yKt--~~C~~f~~~G~C~~---G~~C~f~---H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt  231 (349)
                      ..|++  .+|..|...|.|++   |+.|.|+   |+..++..                             +..-..|+|
T Consensus       224 ~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-----------------------------k~k~~~frT  274 (351)
T COG5063         224 PLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-----------------------------KKKKQNFRT  274 (351)
T ss_pred             hhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-----------------------------ccccccccc
Confidence            46788  89999999999999   9999999   98766421                             123347899


Q ss_pred             cccccccccccCCCCCCCCCCCCcccccc
Q 018874          232 RICNKWELTGYCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       232 ~lC~~f~~~G~C~~G~~C~FaHg~~ELr~  260 (349)
                      +.|..|++.|+|+||.+|.|+||..++..
T Consensus       275 ePcinwe~sGyc~yg~Rc~F~hgd~~~ie  303 (351)
T COG5063         275 EPCINWEKSGYCPYGLRCCFKHGDDSDIE  303 (351)
T ss_pred             CCccchhhcccCccccccccccCChhhcc
Confidence            99999999999999999999999887654

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.77  E-value=7.7e-09  Score=105.18  Aligned_cols=149  Identities=23%  Similarity=0.459  Sum_probs=95.5

Q ss_pred             CCCccccCccccccccccccccCCCC-CCCCCCCCCCccccCCCCCchHHHHH---hhhhhhcccCC----CCccccccc
Q 018874           76 NSKSKAIGKMFFKTKLCCKFRNGTCP-YITNCNFAHSIEELRRPPPNWQEIVA---AHEEERASTNE----IPREEFQIP  147 (349)
Q Consensus        76 ~~~~~~~~~~~yKTklC~~f~~G~C~-~G~~C~FaH~~eelR~pp~~~~e~~~---~~~e~~~~~~~----~~r~~~q~P  147 (349)
                      +...+.++-..|||-+|..-..|.|. .+..|.|+|...++|.+...+.++..   ...++......    .-.++.+.|
T Consensus       104 ~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~p  183 (528)
T KOG1595|consen  104 GDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWP  183 (528)
T ss_pred             CCcceeEeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcc
Confidence            33356677788999999965679994 46789999999999987654444320   00000100000    111112223


Q ss_pred             ccc-ccccccccccccccccCccccccCCCCCCCCCCCCC-CccccccccccccCCCCCCCCCCCcccccCCCCCccccC
Q 018874          148 SIV-STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLH-DEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVK  225 (349)
Q Consensus       148 ~~~-s~~~~~~~~~~yKt~~C~~f~~~G~C~~G~~C~f~H-~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~  225 (349)
                      .|. .++-.....-.||++.|.    .+.|.-+..|.|+| .+...+|....                            
T Consensus       184 di~~~ys~DeFrMy~fKir~C~----R~~shDwteCPf~HpgEkARRRDPRk----------------------------  231 (528)
T KOG1595|consen  184 DINGIYSSDEFRMYSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRK----------------------------  231 (528)
T ss_pred             cccccccccceEEEeeeecccC----CccCCCcccCCccCCCcccccCCccc----------------------------
Confidence            321 001111223469999996    35899999999999 66666654221                            


Q ss_pred             CCcccccccccccccccCCCCCCCCCCCCcccc
Q 018874          226 PSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL  258 (349)
Q Consensus       226 p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL  258 (349)
                       -.|....|+.|. +|.|..||.|.|+||..|.
T Consensus       232 -yhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc  262 (528)
T KOG1595|consen  232 -YHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC  262 (528)
T ss_pred             -ccccCccCcccc-cCCCCCCCccccccceehh
Confidence             246677899998 6999999999999998874

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.50  E-value=2.6e-08  Score=62.65  Aligned_cols=27  Identities=56%  Similarity=1.232  Sum_probs=21.9

Q ss_pred             ccccccccccccccCCCCCCCCCCCCc
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHGI  255 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~  255 (349)
                      ||+++|++|+.+|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578899999989999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.39  E-value=7.2e-08  Score=60.66  Aligned_cols=25  Identities=56%  Similarity=1.158  Sum_probs=20.5

Q ss_pred             cccccccccc-cCCCCCCCCCCCCCC
Q 018874           87 FKTKLCCKFR-NGTCPYITNCNFAHS  111 (349)
Q Consensus        87 yKTklC~~f~-~G~C~~G~~C~FaH~  111 (349)
                      |||++|.+|+ .|.|++|+.|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            6899999999 599999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.27  E-value=1.9e-06  Score=82.75  Aligned_cols=90  Identities=24%  Similarity=0.664  Sum_probs=70.6

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      .+...+|++|..|.|+.+..|.|+|+..-++.                                             .+.
T Consensus       101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s---------------------------------------------~~~  135 (285)
T COG5084         101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS---------------------------------------------QGP  135 (285)
T ss_pred             ccCCcccchhccccCcCCCccccccCCCcccc---------------------------------------------cCC
Confidence            56779999999999999999999998732220                                             133


Q ss_pred             cCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc--cccC
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL--TGYC  243 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~--~G~C  243 (349)
                      .|+.|...|.|..|..|.|.|......                                      ...|.+|..  ++.|
T Consensus       136 ~c~~Fs~~G~cs~g~~c~~~h~dp~~~--------------------------------------~~~~~~~~~~~~~f~  177 (285)
T COG5084         136 PCRSFSLKGSCSSGPSCGYSHIDPDSF--------------------------------------AGNCDQYSGATYGFC  177 (285)
T ss_pred             CcccccccceeccCCCCCccccCcccc--------------------------------------cccccccCccccccc
Confidence            788888999999999999999874311                                      123665553  7999


Q ss_pred             CCCCCCCCCCCcccc
Q 018874          244 PFGNKCHFAHGIQEL  258 (349)
Q Consensus       244 ~~G~~C~FaHg~~EL  258 (349)
                      ++|..|+|.|+...+
T Consensus       178 p~g~~c~~~H~~~~~  192 (285)
T COG5084         178 PLGASCKFSHTLKRV  192 (285)
T ss_pred             CCCCccccccccccc
Confidence            999999999998743

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.14  E-value=2.7e-06  Score=78.69  Aligned_cols=23  Identities=26%  Similarity=0.771  Sum_probs=14.8

Q ss_pred             cCccccccCCCCCCCCCCCCCCccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      .|+ |+..|.|. ..+|+|.|..-.
T Consensus       263 acr-yfllgkcn-npncryvhihys  285 (377)
T KOG1492|consen  263 ACR-YFLLGKCN-NPNCRYVHIHYS  285 (377)
T ss_pred             hhh-hhhhccCC-CCCceEEEEeec
Confidence            564 44557776 577888776544

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.04  E-value=2e-06  Score=79.52  Aligned_cols=104  Identities=26%  Similarity=0.533  Sum_probs=71.7

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874           90 KLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK  168 (349)
Q Consensus        90 klC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~  168 (349)
                      .-|++|. +|.|-.|..|+|.|..  .                                               +..+|+
T Consensus       207 vycryynangicgkgaacrfvhep--t-----------------------------------------------rkticp  237 (377)
T KOG1492|consen  207 VYCRYYNANGICGKGAACRFVHEP--T-----------------------------------------------RKTICP  237 (377)
T ss_pred             eEEEEecCCCcccCCceeeeeccc--c-----------------------------------------------ccccCh
Confidence            5699998 7999999999999954  1                                               124898


Q ss_pred             cccccCCCCCCCCCCCCCCccccccccccc-cCCCCCCCCCCCcccccCCCCCccccCC-CcccccccccccccccCCCC
Q 018874          169 KFYTEEGCPYGENCTFLHDEQSKNRESVAI-SLGPGGYGGGGAAAAAAGNNIGVSNVKP-SNWKTRICNKWELTGYCPFG  246 (349)
Q Consensus       169 ~f~~~G~C~~G~~C~f~H~~~e~~res~~~-s~~ps~~~~~~~~~~~~~~~~~~~~~~p-~~~Kt~lC~~f~~~G~C~~G  246 (349)
                      +|. .|.|.....|..+|..+..+.+.+.. -+|             -+.+++....+. -.-...+|-.|.+.|+|..|
T Consensus       238 kfl-ngrcnkaedcnlsheldprripacryfllg-------------kcnnpncryvhihysenapicfefakygfcelg  303 (377)
T KOG1492|consen  238 KFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLG-------------KCNNPNCRYVHIHYSENAPICFEFAKYGFCELG  303 (377)
T ss_pred             HHh-cCccCchhcCCcccccCccccchhhhhhhc-------------cCCCCCceEEEEeecCCCceeeeehhcceeccc
Confidence            776 59999999999999998765543321 111             112222111111 01123479999999999999


Q ss_pred             CCCCCCCCcc
Q 018874          247 NKCHFAHGIQ  256 (349)
Q Consensus       247 ~~C~FaHg~~  256 (349)
                      ..|.-.|-.+
T Consensus       304 tscknqhilq  313 (377)
T KOG1492|consen  304 TSCKNQHILQ  313 (377)
T ss_pred             cccccceeee
Confidence            9999999654

>smart00356 ZnF_C3H1 zinc finger

Probab=98.03  E-value=2.9e-06  Score=52.60  Aligned_cols=25  Identities=52%  Similarity=1.157  Sum_probs=23.5

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q 018874           87 FKTKLCCKFRNGTCPYITNCNFAHS  111 (349)
Q Consensus        87 yKTklC~~f~~G~C~~G~~C~FaH~  111 (349)
                      +|+.+|.+|.+|.|.+|+.|+|+|.
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCc
Confidence            6889999999999999999999996

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=97.96  E-value=5.5e-06  Score=81.18  Aligned_cols=110  Identities=23%  Similarity=0.370  Sum_probs=67.2

Q ss_pred             cccccccc--CCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccC
Q 018874           90 KLCCKFRN--GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHC  167 (349)
Q Consensus        90 klC~~f~~--G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C  167 (349)
                      ..|.++..  -.|.+|..|.+.|....                                             ...++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~vc   80 (325)
T KOG1040|consen   46 ATCEFNESREKPCERGPICPKSHNDVS---------------------------------------------DSRGKVVC   80 (325)
T ss_pred             chhcccccCCCCccCCCCCccccCCcc---------------------------------------------ccCCceee
Confidence            45666654  57999999999996521                                             02356799


Q ss_pred             ccccccCCCCCCCCCCCCCCccccc-cccccccCCCCCCCCCCCcccccCCC-CCccccCCC-cccccccccccccccCC
Q 018874          168 KKFYTEEGCPYGENCTFLHDEQSKN-RESVAISLGPGGYGGGGAAAAAAGNN-IGVSNVKPS-NWKTRICNKWELTGYCP  244 (349)
Q Consensus       168 ~~f~~~G~C~~G~~C~f~H~~~e~~-res~~~s~~ps~~~~~~~~~~~~~~~-~~~~~~~p~-~~Kt~lC~~f~~~G~C~  244 (349)
                      + |+..|.|+.|+.|.|+|...-.+ ++-..+++.            +.+.+ ...+..+.. .-+..+|+.|. .|+|+
T Consensus        81 K-~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~------------g~c~~~~~c~y~h~dpqt~~k~c~~~~-~g~c~  146 (325)
T KOG1040|consen   81 K-HWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLF------------GECTNGKDCPYLHGDPQTAIKKCKWYK-EGFCR  146 (325)
T ss_pred             h-hhhhhhhhccCcCcchhhhhhcccccccccccc------------cccccccCCcccCCChhhhhhccchhh-hccCC
Confidence            5 55679999999999999873221 122212110            11112 112222222 34455787665 78888


Q ss_pred             CCCCCCCCCCcccc
Q 018874          245 FGNKCHFAHGIQEL  258 (349)
Q Consensus       245 ~G~~C~FaHg~~EL  258 (349)
                      .|+.|++.|-...+
T Consensus       147 ~g~~c~~~h~~~~~  160 (325)
T KOG1040|consen  147 GGPSCKKRHERKVL  160 (325)
T ss_pred             CcchhhhhhhcccC
Confidence            88888888876643

>smart00356 ZnF_C3H1 zinc finger

Probab=97.87  E-value=8.2e-06  Score=50.53  Aligned_cols=26  Identities=46%  Similarity=1.307  Sum_probs=22.9

Q ss_pred             ccccccccccccccCCCCCCCCCCCCc
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHGI  255 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~  255 (349)
                      +|+.+|++| .+|.|++|+.|+|.|..
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467789999 59999999999999973

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.77  E-value=1e-05  Score=78.41  Aligned_cols=60  Identities=27%  Similarity=0.501  Sum_probs=45.2

Q ss_pred             ccccccccccCCCCCCCC-CCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccccc
Q 018874           88 KTKLCCKFRNGTCPYITN-CNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRH  166 (349)
Q Consensus        88 KTklC~~f~~G~C~~G~~-C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~  166 (349)
                      ..++|+.|+.|+|.+|+. |+|+|....+.+                                          ..-+...
T Consensus        36 ~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V------------------------------------------~~g~v~a   73 (331)
T KOG2494|consen   36 TLEVCREFLRNTCSRGDRECKFAHPPKNCQV------------------------------------------SNGRVIA   73 (331)
T ss_pred             HHHHHHHHHhccccCCCccccccCCCCCCCc------------------------------------------cCCeEEE
Confidence            458999999999999998 999997642211                                          0124457


Q ss_pred             CccccccCCCCCCCCCCCCCCcccc
Q 018874          167 CKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       167 C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      |. -+..|.|. .++|+|+|...++
T Consensus        74 C~-Ds~kgrCs-R~nCkylHpp~hl   96 (331)
T KOG2494|consen   74 CF-DSQKGRCS-RENCKYLHPPQHL   96 (331)
T ss_pred             Ee-ccccCccC-cccceecCCChhh
Confidence            94 45669999 5779999988765

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.60  E-value=1.8e-05  Score=80.31  Aligned_cols=60  Identities=38%  Similarity=0.851  Sum_probs=45.9

Q ss_pred             ccccccccccC---CCCCCCCCCCCCCccc-cCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccc
Q 018874           88 KTKLCCKFRNG---TCPYITNCNFAHSIEE-LRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYK  163 (349)
Q Consensus        88 KTklC~~f~~G---~C~~G~~C~FaH~~ee-lR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yK  163 (349)
                      +..||+....|   .|.||++|+|.|+++- |...+++                           |              
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D---------------------------i--------------  113 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD---------------------------I--------------  113 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcc---------------------------c--------------
Confidence            56999999865   7999999999999855 3322221                           1              


Q ss_pred             cccCccccccCCCCCCCCCCCCCCc
Q 018874          164 GRHCKKFYTEEGCPYGENCTFLHDE  188 (349)
Q Consensus       164 t~~C~~f~~~G~C~~G~~C~f~H~~  188 (349)
                      ...|..|...|.|+||..|||+-..
T Consensus       114 g~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen  114 GPSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             CCccceeeccccCCccceeehhhcc
Confidence            1368889999999999999997533

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=6.3e-05  Score=76.01  Aligned_cols=86  Identities=24%  Similarity=0.417  Sum_probs=62.4

Q ss_pred             ccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCcc
Q 018874           90 KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKK  169 (349)
Q Consensus        90 klC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~~  169 (349)
                      ..|.+|+...|++++.|.|.|...-|.                                              -...|..
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~----------------------------------------------n~t~C~~   37 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALG----------------------------------------------NETVCTL   37 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhc----------------------------------------------Ccchhhh
Confidence            468899989999999999999652211                                              1247977


Q ss_pred             ccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccccc-CCCCCC
Q 018874          170 FYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY-CPFGNK  248 (349)
Q Consensus       170 f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~-C~~G~~  248 (349)
                      |...-.|+.  .|+|-|....+.|                                    ...+|.+|. ++. |.+ .+
T Consensus        38 w~~~~~C~k--~C~YRHSe~~~kr------------------------------------~e~~CYwe~-~p~gC~k-~~   77 (667)
T KOG4791|consen   38 WQEGRCCRK--VCRYRHSEIDKKR------------------------------------SEIPCYWEN-QPTGCQK-LN   77 (667)
T ss_pred             hhhcCcccc--cccchhhHHhhhc------------------------------------Ccccceeec-CCCccCC-Cc
Confidence            776655764  9999998876432                                    235797666 666 987 79


Q ss_pred             CCCCCCccccccC
Q 018874          249 CHFAHGIQELHRF  261 (349)
Q Consensus       249 C~FaHg~~ELr~~  261 (349)
                      |-|.|....|...
T Consensus        78 CgfRH~~pPLkg~   90 (667)
T KOG4791|consen   78 CGFRHNRPPLKGV   90 (667)
T ss_pred             cccccCCCchhhh
Confidence            9999976555443

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.49  E-value=4.4e-05  Score=74.02  Aligned_cols=60  Identities=27%  Similarity=0.589  Sum_probs=45.2

Q ss_pred             cccCccccccCCCCCCCC-CCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccccc
Q 018874          164 GRHCKKFYTEEGCPYGEN-CTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY  242 (349)
Q Consensus       164 t~~C~~f~~~G~C~~G~~-C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~  242 (349)
                      -.+|+.|.. +.|.+|++ |+|+|......                                 -+.-+...|-.|+ +|.
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~---------------------------------V~~g~v~aC~Ds~-kgr   81 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQ---------------------------------VSNGRVIACFDSQ-KGR   81 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCC---------------------------------ccCCeEEEEeccc-cCc
Confidence            358988765 99999999 99999876421                                 1123345699998 899


Q ss_pred             CCCCCCCCCCCCccccc
Q 018874          243 CPFGNKCHFAHGIQELH  259 (349)
Q Consensus       243 C~~G~~C~FaHg~~ELr  259 (349)
                      |.+ ++|+|.|+..+|+
T Consensus        82 CsR-~nCkylHpp~hlk   97 (331)
T KOG2494|consen   82 CSR-ENCKYLHPPQHLK   97 (331)
T ss_pred             cCc-ccceecCCChhhh
Confidence            998 5699999977653

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.33  E-value=9.3e-05  Score=75.26  Aligned_cols=61  Identities=31%  Similarity=0.783  Sum_probs=44.1

Q ss_pred             ccccCcccccc--CCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          163 KGRHCKKFYTE--EGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       163 Kt~~C~~f~~~--G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      +..+|+.....  ..|.||++|+|.|+......-                              ++.... .-|+.|...
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLat------------------------------K~~Dig-~~Cp~f~s~  123 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLAT------------------------------KAPDIG-PSCPVFESL  123 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhc------------------------------cCcccC-Cccceeecc
Confidence            34588766655  469999999999999764211                              111111 239999999


Q ss_pred             ccCCCCCCCCCCCC
Q 018874          241 GYCPFGNKCHFAHG  254 (349)
Q Consensus       241 G~C~~G~~C~FaHg  254 (349)
                      |+|++|-+|||+-.
T Consensus       124 G~Cp~G~~CRFl~a  137 (614)
T KOG2333|consen  124 GFCPYGFKCRFLGA  137 (614)
T ss_pred             ccCCccceeehhhc
Confidence            99999999999743

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.89  E-value=0.00024  Score=66.24  Aligned_cols=31  Identities=45%  Similarity=0.712  Sum_probs=28.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCCccccCC
Q 018874           87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR  117 (349)
Q Consensus        87 yKTklC~~f~~G~C~~G~~C~FaH~~eelR~  117 (349)
                      -|+.+|..|.++.|..|+.|+|+|+.++.|.
T Consensus        83 pK~~vcalF~~~~c~kg~~ckF~h~~ee~r~  113 (299)
T COG5252          83 PKTVVCALFLNKTCAKGDACKFAHGKEEARK  113 (299)
T ss_pred             chhHHHHHhccCccccCchhhhhcchHHHhh
Confidence            4899999999999999999999999988665

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=96.86  E-value=0.00023  Score=68.23  Aligned_cols=29  Identities=31%  Similarity=0.731  Sum_probs=25.1

Q ss_pred             cccccCccccccCCCCCCCCCCCCCCcccc
Q 018874          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      .|+.+| .|+..|.|..|+.|.|+|+....
T Consensus        90 PKSvvC-afFk~g~C~KG~kCKFsHdl~~~  118 (343)
T KOG1763|consen   90 PKSVVC-AFFKQGTCTKGDKCKFSHDLAVE  118 (343)
T ss_pred             chHHHH-HHHhccCCCCCCcccccchHHHh
Confidence            588899 57778999999999999998764

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.60  E-value=0.0011  Score=66.13  Aligned_cols=40  Identities=28%  Similarity=0.740  Sum_probs=30.7

Q ss_pred             ccCCCcccccccccccccccCCCCCCCCCCCCc----cccccCCC
Q 018874          223 NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGI----QELHRFGG  263 (349)
Q Consensus       223 ~~~p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~----~ELr~~~~  263 (349)
                      ..+|..-...+|+||+ .|.|+|+.+|||.||.    .+|+.|..
T Consensus       132 fl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V~lsslr~yq~  175 (486)
T KOG2185|consen  132 FLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDVPLSSLRNYQQ  175 (486)
T ss_pred             eecCcchhhccchHhh-ccccccCcccccccCcccchhhcccCCC
Confidence            3455556667899998 8999999999999984    35565543

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.55  E-value=0.007  Score=58.49  Aligned_cols=86  Identities=22%  Similarity=0.584  Sum_probs=62.7

Q ss_pred             ccccccc-ccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccC
Q 018874           89 TKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHC  167 (349)
Q Consensus        89 TklC~~f-~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C  167 (349)
                      .-.|++| ..|.|..|..|.++|..-+-.                                               ...|
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~-----------------------------------------------~~~~  166 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSF-----------------------------------------------AGNC  166 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCcccc-----------------------------------------------cccc
Confidence            5679999 589999999999999761111                                               1245


Q ss_pred             cccc--ccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCC
Q 018874          168 KKFY--TEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPF  245 (349)
Q Consensus       168 ~~f~--~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~  245 (349)
                      ..|.  ..+.|.+|..|++.|.....                                    .|.+..|..|. .++|+.
T Consensus       167 ~~~~~~~~~f~p~g~~c~~~H~~~~~------------------------------------~~~~~p~~~y~-~~fsP~  209 (285)
T COG5084         167 DQYSGATYGFCPLGASCKFSHTLKRV------------------------------------SYGSSPCGNYT-PPFSPP  209 (285)
T ss_pred             cccCcccccccCCCCccccccccccc------------------------------------cccccccccCc-CCcCCC
Confidence            3333  26899999999999988642                                    12223688887 788888


Q ss_pred             CCC--------------CCCCCCcccc
Q 018874          246 GNK--------------CHFAHGIQEL  258 (349)
Q Consensus       246 G~~--------------C~FaHg~~EL  258 (349)
                      |..              |.+.|+..+.
T Consensus       210 g~~~~~~~~~~~~~~~~~~~~~ps~~~  236 (285)
T COG5084         210 GTPSESVSSWGYGKGTSCSLSHPSLNI  236 (285)
T ss_pred             CCCccccccccccccccccCCCccccC
Confidence            888              9999986543

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.005  Score=62.64  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             ccccccccCC-CCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccccCc
Q 018874           90 KLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCK  168 (349)
Q Consensus        90 klC~~f~~G~-C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~~C~  168 (349)
                      ..|.+|+.+. |+.  .|.|-|+.-.+.+                                             ...+| 
T Consensus        33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr---------------------------------------------~e~~C-   64 (667)
T KOG4791|consen   33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR---------------------------------------------SEIPC-   64 (667)
T ss_pred             chhhhhhhcCcccc--cccchhhHHhhhc---------------------------------------------Ccccc-
Confidence            6799999775 554  8999997633221                                             23489 


Q ss_pred             cccccCC-CCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccccCCCCC
Q 018874          169 KFYTEEG-CPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGN  247 (349)
Q Consensus       169 ~f~~~G~-C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G~C~~G~  247 (349)
                      +|...+. |. .++|-|-|....+.-.......      .....-++....+.   .....-....|-+|+ .++|..++
T Consensus        65 Ywe~~p~gC~-k~~CgfRH~~pPLkg~l~~~p~------~pe~ev~~~~~SAq---~~sV~~~p~P~l~~~-K~~e~~~D  133 (667)
T KOG4791|consen   65 YWENQPTGCQ-KLNCGFRHNRPPLKGVLPTVPE------SPEEEVKASQLSAQ---QNSVQSNPSPQLRSV-KKVESSED  133 (667)
T ss_pred             eeecCCCccC-CCccccccCCCchhhhccCCCC------CcccccccccccCC---CcccccCCchHHHHh-hhhhhhcc
Confidence            5666666 98 6999999966543211000000      00000000000000   001112234688887 89999999


Q ss_pred             CCCCCCCcc
Q 018874          248 KCHFAHGIQ  256 (349)
Q Consensus       248 ~C~FaHg~~  256 (349)
                      .|-|.|...
T Consensus       134 ~~s~Lh~P~  142 (667)
T KOG4791|consen  134 VPSPLHPPV  142 (667)
T ss_pred             ccccCCCCc
Confidence            999999753

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.95  E-value=0.0028  Score=63.25  Aligned_cols=39  Identities=33%  Similarity=0.865  Sum_probs=29.3

Q ss_pred             ccccccccccCCCCCCCCCCCCCCc----cccCC-CCCchHHHH
Q 018874           88 KTKLCCKFRNGTCPYITNCNFAHSI----EELRR-PPPNWQEIV  126 (349)
Q Consensus        88 KTklC~~f~~G~C~~G~~C~FaH~~----eelR~-pp~~~~e~~  126 (349)
                      -.++|.||+.|.|+|+++|+|+|+.    +.||. -+++|..|+
T Consensus       139 sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq~pD~s~L~  182 (486)
T KOG2185|consen  139 SMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQQPDWSQLM  182 (486)
T ss_pred             hhccchHhhccccccCcccccccCcccchhhcccCCCccHHHHh
Confidence            4588999999999999999999987    33432 344565544

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.61  E-value=0.0076  Score=34.77  Aligned_cols=19  Identities=32%  Similarity=0.728  Sum_probs=16.3

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 018874          233 ICNKWELTGYCPFGNKCHFAHG  254 (349)
Q Consensus       233 lC~~f~~~G~C~~G~~C~FaHg  254 (349)
                      +|+||.   .|++++.|.|.|+
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            488876   3999999999995

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.55  E-value=0.0086  Score=34.54  Aligned_cols=19  Identities=37%  Similarity=0.621  Sum_probs=16.0

Q ss_pred             cccccccCCCCCCCCCCCCCC
Q 018874           91 LCCKFRNGTCPYITNCNFAHS  111 (349)
Q Consensus        91 lC~~f~~G~C~~G~~C~FaH~  111 (349)
                      +|++|..  |+++++|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4887754  999999999994

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=94.90  E-value=0.0065  Score=58.46  Aligned_cols=31  Identities=32%  Similarity=0.725  Sum_probs=27.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCCccccCC
Q 018874           87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR  117 (349)
Q Consensus        87 yKTklC~~f~~G~C~~G~~C~FaH~~eelR~  117 (349)
                      -|+.+|.+|.+|+|..|+.|+|+|+....|.
T Consensus        90 PKSvvCafFk~g~C~KG~kCKFsHdl~~~~k  120 (343)
T KOG1763|consen   90 PKSVVCAFFKQGTCTKGDKCKFSHDLAVERK  120 (343)
T ss_pred             chHHHHHHHhccCCCCCCcccccchHHHhhh
Confidence            4889999999999999999999999855443

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=94.76  E-value=0.0073  Score=56.50  Aligned_cols=84  Identities=21%  Similarity=0.458  Sum_probs=48.6

Q ss_pred             cccccCccccccCCCCCCCCCCCCCCcccccc-ccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc-
Q 018874          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR-ESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL-  239 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~r-es~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~-  239 (349)
                      .|+.+|..| ..+.|..|+.|.|+|+..+.++ +...+-.....-      ..+.+.   +  ..|-.--.++|+||.. 
T Consensus        83 pK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~------~ed~pl---~--krP~intd~VCkffieA  150 (299)
T COG5252          83 PKTVVCALF-LNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDK------EEDVPL---G--KRPWINTDRVCKFFIEA  150 (299)
T ss_pred             chhHHHHHh-ccCccccCchhhhhcchHHHhhhcccchhhhhhhh------hccCCc---c--cCCCCChhHHHHHHHHH
Confidence            488899655 5699999999999999876543 111111000000      000000   0  1111122358998854 


Q ss_pred             --cc------cCCCC-CCCCCCCCccc
Q 018874          240 --TG------YCPFG-NKCHFAHGIQE  257 (349)
Q Consensus       240 --~G------~C~~G-~~C~FaHg~~E  257 (349)
                        +|      .||+| .+|-|.|.+.+
T Consensus       151 ~e~GkYgw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         151 MESGKYGWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             HhcCCccceeeCCCCCceeeeeeccCc
Confidence              23      49999 79999998765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.48  E-value=0.013  Score=53.60  Aligned_cols=30  Identities=30%  Similarity=0.927  Sum_probs=26.1

Q ss_pred             ccccccccccccccCCCCCCCCCCCCcccc
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL  258 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL  258 (349)
                      +...+|+.|..+|||-||+.|.|.|..++.
T Consensus       139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             cCcccccchhhcccccCCchhhhhhhhhhh
Confidence            445689999999999999999999987654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.92  E-value=0.022  Score=52.12  Aligned_cols=35  Identities=20%  Similarity=0.601  Sum_probs=28.9

Q ss_pred             Cccccccccccccc-cCCCCCCCCCCCCCCccccCC
Q 018874           83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRR  117 (349)
Q Consensus        83 ~~~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~  117 (349)
                      --+.|.-.+|..|. +|.|-||+.|+|+|..++...
T Consensus       135 ~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt  170 (259)
T COG5152         135 EVIDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT  170 (259)
T ss_pred             ceeecCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence            34556678999998 899999999999999876543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.088  Score=52.34  Aligned_cols=25  Identities=28%  Similarity=0.846  Sum_probs=22.3

Q ss_pred             ccCccccccCCCCCCCCCCCCCCccc
Q 018874          165 RHCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      ++| +|+..|.|++|+.|+|.|+...
T Consensus         9 tic-~~~~~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TIC-KYYQKGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhh-hhcccccccccceeeeeccCch
Confidence            689 5778899999999999999984

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.92  E-value=0.16  Score=49.16  Aligned_cols=30  Identities=33%  Similarity=0.999  Sum_probs=26.0

Q ss_pred             ccccccccccccccCCCCCCCCCCCCcccc
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHGIQEL  258 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~EL  258 (349)
                      |..-+|+.|..+|+|-||+.|.|.|.....
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            445689999999999999999999987654

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=84.20  E-value=0.61  Score=28.29  Aligned_cols=20  Identities=35%  Similarity=0.766  Sum_probs=16.5

Q ss_pred             ccccccccC-CCCCCCCCCCCC
Q 018874           90 KLCCKFRNG-TCPYITNCNFAH  110 (349)
Q Consensus        90 klC~~f~~G-~C~~G~~C~FaH  110 (349)
                      .||.+.++| .|.. +.|.|.|
T Consensus         1 ~lC~yEl~Gg~Cnd-~~C~~QH   21 (23)
T PF10650_consen    1 PLCPYELTGGVCND-PDCEFQH   21 (23)
T ss_pred             CCCccccCCCeeCC-CCCCccc
Confidence            479999987 9954 5899999

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.85  E-value=0.4  Score=47.77  Aligned_cols=24  Identities=33%  Similarity=1.025  Sum_probs=22.4

Q ss_pred             cccccccccccCCCCCCCCCCCCcc
Q 018874          232 RICNKWELTGYCPFGNKCHFAHGIQ  256 (349)
Q Consensus       232 ~lC~~f~~~G~C~~G~~C~FaHg~~  256 (349)
                      .+|+||+ .|+|.+|+.|||.|...
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            6799998 89999999999999977

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.62  E-value=0.42  Score=46.39  Aligned_cols=33  Identities=33%  Similarity=0.790  Sum_probs=28.1

Q ss_pred             ccccccccCccccccCCCCCCCCCCCCCCcccc
Q 018874          159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       159 ~~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      ..-|..-+|+.|..+|+|-||+.|.|+|.....
T Consensus       181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            334666789999999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		3e-04
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		6e-04

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 37/104 (35%)
Query: 158 TQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXN 217
           T   YK   C+ +     C YG  C F H                               
Sbjct: 6   TSSRYKTELCRTYSESGRCRYGAKCQFAH------------------------------- 34
Query: 218 NIGVSNVKPSN----WKTRICNKWELTGYCPFGNKCHFAHGIQE 257
             G+  ++ +N    +KT +C+K++L G CP+G++CHF H   E
Sbjct: 35  --GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXNNIGV 221
           YK   C+ F     C YGE C F H                                   
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 34
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
           S  +   +KT +C  +   G+CP+G +CHF H   E
Sbjct: 35  SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-17
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	8e-11
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-05
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	2e-05
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	2e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 29/100 (29%)

Query: 158 TQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN 217
           T   YK   C+ +     C YG  C F H      + +                      
Sbjct: 6   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN---------------------- 43

Query: 218 NIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
                  +   +KT +C+K++L G CP+G++CHF H   E
Sbjct: 44  -------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 39/112 (34%)

Query: 79  SKAIGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTN 137
           S       +KT+LC  +  +G C Y   C FAH + ELR+   + +              
Sbjct: 2   SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPK-------------- 47

Query: 138 EIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
                                   YK   C KF  +  CPYG  C F+H+  
Sbjct: 48  ------------------------YKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 220 GVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR 260
           G      S +KT +C  +  +G C +G KC FAHG+ EL +
Sbjct: 1   GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 74  DVNSKSKAIGKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
            +    +A     +KT+LC KF   G CPY + C+F H+  E
Sbjct: 35  GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 90  KLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQE 124
            +C ++ NGTCP   +C FAH   EL      W+E
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGNAELHE----WEE 51

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 232 RICNKWELTGYCPFGNKCHFAHGIQELH 259
            IC+++ + G CP GN C FAHG  ELH
Sbjct: 21  SICDRY-MNGTCPEGNSCKFAHGNAELH 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.61
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.59
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.34
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.13
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.03
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.01
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.96
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.91
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.87
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.73
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.7
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.69
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.49
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.49
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.41
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.23
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.94
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.38
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.31
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.11
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	93.04
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.96
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.32
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	85.83

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.61  E-value=2.2e-16  Score=121.81  Aligned_cols=70  Identities=37%  Similarity=0.857  Sum_probs=32.1

Q ss_pred             Cccccccccccccc-cCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccc
Q 018874           83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS  161 (349)
Q Consensus        83 ~~~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~  161 (349)
                      ++.+|||+||++|+ +|.|++|++|+|+|+.++++....                                      ...
T Consensus         6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------------------------------------~~~   47 (77)
T 1m9o_A            6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------------------------------------HPK   47 (77)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------------
T ss_pred             CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------------------------------------ccc
Confidence            45679999999997 899999999999999988775321                                      124


Q ss_pred             cccccCccccccCCCCCCCCCCCCCCccc
Q 018874          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      +++.+|+.|...|.|++|++|+|+|...|
T Consensus        48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             -----------------------------
T ss_pred             ccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            67889988999999999999999998765

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.59  E-value=4.2e-16  Score=120.20  Aligned_cols=69  Identities=33%  Similarity=0.858  Sum_probs=30.2

Q ss_pred             cccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccc
Q 018874          160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL  239 (349)
Q Consensus       160 ~~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~  239 (349)
                      .+||+.+|+.|...|.|++|++|+|+|+..+++..                             ...+.+++.+|++|..
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~-----------------------------~~~~~~k~~~C~~f~~   58 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA-----------------------------NRHPKYKTELCHKFKL   58 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT-----------------------------C---------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc-----------------------------cccccccCCcccchhh
Confidence            46899999888889999999999999999876431                             1224678899998888


Q ss_pred             cccCCCCCCCCCCCCccc
Q 018874          240 TGYCPFGNKCHFAHGIQE  257 (349)
Q Consensus       240 ~G~C~~G~~C~FaHg~~E  257 (349)
                      +|.|++|++|+|+|+..|
T Consensus        59 ~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           59 QGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ------------------
T ss_pred             CcCCCCcCcCCCCCCCCC
Confidence            999999999999999865

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=5.4e-13  Score=103.25  Aligned_cols=57  Identities=26%  Similarity=0.504  Sum_probs=47.7

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      .+|+++|++|+.|.|++|++|+|+|+....                                               ++.
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~~   39 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KMP   39 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT-----------------------------------------------TSC
T ss_pred             CCcceeCHhHccCcCCCCCCCCCccccccC-----------------------------------------------cCC
Confidence            568899999999999999999999987331                                               234


Q ss_pred             cCccccccCCCCCCCCCCCCCCccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      +|++|...|.|. |+.|+|+|...+
T Consensus        40 ~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           40 ECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             BCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CCcccCCCCccC-CCCeeccCCCcc
Confidence            797666669999 999999998864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.13  E-value=2.5e-11  Score=98.11  Aligned_cols=53  Identities=32%  Similarity=0.646  Sum_probs=46.7

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      .+|+.+|++|++|.|++|++|+|+|+.                                                    .
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~~----------------------------------------------------~   37 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHGD----------------------------------------------------F   37 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSSS----------------------------------------------------S
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCCC----------------------------------------------------C
Confidence            468999999999999999999999971                                                    2


Q ss_pred             cCccccccCCCCCCCCCCCCCCccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      +|+.|...|.|++|+.|+|+|....
T Consensus        38 ~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           38 PCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             cCcCcccCCcCCCCCCCcccCCCCc
Confidence            7977778899999999999998653

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.06  E-value=7.3e-11  Score=95.41  Aligned_cols=52  Identities=31%  Similarity=0.677  Sum_probs=45.2

Q ss_pred             ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .+|+.+|++| ..|.|++|+.|+|+|+.                                           .+|++|..+
T Consensus        10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~-------------------------------------------~~C~~f~~~   45 (98)
T 2cqe_A           10 PKKRELCKFY-ITGFCARAENCPYMHGD-------------------------------------------FPCKLYHTT   45 (98)
T ss_dssp             SCCCSBCTTT-TTTCCSCSTTCSSBSSS-------------------------------------------SBCSHHHHT
T ss_pred             CCCCccCccc-ccCcCCCCCCCCCCCCC-------------------------------------------CcCcCcccC
Confidence            4789999766 68999999999999981                                           349999779


Q ss_pred             ccCCCCCCCCCCCCcc
Q 018874          241 GYCPFGNKCHFAHGIQ  256 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~  256 (349)
                      |.|++|++|+|+|...
T Consensus        46 G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           46 GNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SCCSSCTTCSSBCCCC
T ss_pred             CcCCCCCCCcccCCCC
Confidence            9999999999999854

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.05  E-value=4e-11  Score=91.64  Aligned_cols=57  Identities=26%  Similarity=0.498  Sum_probs=46.9

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      ..|+++|++|+.|.|++|++|+|+|+....                                               ++.
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~~   45 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KMS   45 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSCCTT-----------------------------------------------SCC
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCccccccc-----------------------------------------------cCC
Confidence            467899999999999999999999986321                                               234


Q ss_pred             cCccccccCCCCCCCCCCCCCCccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      +|++|...|.|.+ +.|+|.|....
T Consensus        46 ~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           46 ECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             BCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             cccccCCCCCCCC-CCeeccCCCcc
Confidence            8966665599999 99999998764

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.1e-10  Score=90.25  Aligned_cols=58  Identities=29%  Similarity=0.548  Sum_probs=47.3

Q ss_pred             ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .+|+.+|++|.. |.|++|+.|+|+|+....                                      ++.+|++|+..
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~--------------------------------------~~~~C~~f~~~   47 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT--------------------------------------KMPECYFYSKF   47 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT--------------------------------------TSCBCHHHHHT
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC--------------------------------------cCCCCcccCCC
Confidence            468899975554 999999999999987531                                      23579999966


Q ss_pred             ccCCCCCCCCCCCCcccc
Q 018874          241 GYCPFGNKCHFAHGIQEL  258 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~EL  258 (349)
                      |.|. |+.|+|+|...+.
T Consensus        48 G~C~-~~~C~f~H~~~~~   64 (77)
T 2d9n_A           48 GECS-NKECPFLHIDPES   64 (77)
T ss_dssp             CCCC-CSSCSSBCCCTTS
T ss_pred             CccC-CCCeeccCCCccc
Confidence            9999 8999999997643

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.01  E-value=1.1e-10  Score=88.64  Aligned_cols=63  Identities=17%  Similarity=0.498  Sum_probs=49.3

Q ss_pred             cccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        87 yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      .|..+|++|+.|.|.+|+ .|+|+|..+++...+                                        ...++.
T Consensus         4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~----------------------------------------~~~~~~   43 (70)
T 3d2q_A            4 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDT----------------------------------------NDNTVT   43 (70)
T ss_dssp             CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT----------------------------------------TTTEEE
T ss_pred             ccchhCHHHhcCCCCCCCCCCCCccCcccccccc----------------------------------------cCCcce
Confidence            467899999999999999 599999886543211                                        113667


Q ss_pred             cCccccccCCCCCCCCCCCCCCcccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      +|..|. .|.|.+| .|+|+|....+
T Consensus        44 vC~~fl-kG~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A           44 VCMDYI-KGRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             BCHHHH-TTCCCCT-TCCSBCCCHHH
T ss_pred             eccccC-cCCCCCC-CcCeeCCHHHH
Confidence            996555 5999999 99999998764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.96  E-value=2e-10  Score=87.20  Aligned_cols=64  Identities=23%  Similarity=0.608  Sum_probs=51.0

Q ss_pred             ccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCcccccccccccccc
Q 018874          163 KGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTG  241 (349)
Q Consensus       163 Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~G  241 (349)
                      +..+|+.| ..|.|.+|+ .|+|+|+..+..                               ..+...++.+|.+|+ .|
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-------------------------------~~~~~~~~~vC~~fl-kG   51 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-------------------------------IDTNDNTVTVCMDYI-KG   51 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-------------------------------CBTTTTEEEBCHHHH-TT
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCccccc-------------------------------ccccCCcceeccccC-cC
Confidence            45689766 679999999 599999886521                               122345678999998 69


Q ss_pred             cCCCCCCCCCCCCcccccc
Q 018874          242 YCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       242 ~C~~G~~C~FaHg~~ELr~  260 (349)
                      .|.+| .|+|.|...+|+.
T Consensus        52 ~C~r~-~C~y~H~~~~L~~   69 (70)
T 3d2q_A           52 RCSRE-KCKYFHPPAHLQA   69 (70)
T ss_dssp             CCCCT-TCCSBCCCHHHHC
T ss_pred             CCCCC-CcCeeCCHHHHhc
Confidence            99999 9999999988864

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.91  E-value=3.2e-10  Score=86.62  Aligned_cols=58  Identities=29%  Similarity=0.515  Sum_probs=46.3

Q ss_pred             ccccccCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      ..++.+|++|. .|.|++|+.|+|+|+...                                      .++.+|++|+..
T Consensus        13 ~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~--------------------------------------~~~~~C~~f~~~   53 (72)
T 2rhk_C           13 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDM--------------------------------------TKMSECYFYSKF   53 (72)
T ss_dssp             CCCCSBCHHHH-TTCCCCGGGSSSBCSCCT--------------------------------------TSCCBCHHHHHH
T ss_pred             CCcCeeCHHHh-cCCCCCCCCCCCcccccc--------------------------------------ccCCcccccCCC
Confidence            45788997555 599999999999998643                                      124579999966


Q ss_pred             ccCCCCCCCCCCCCcccc
Q 018874          241 GYCPFGNKCHFAHGIQEL  258 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~EL  258 (349)
                      |.|.+ +.|+|.|...+.
T Consensus        54 G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           54 GECSN-KECPFLHIDPES   70 (72)
T ss_dssp             SCCSB-TTCCSBCCCCC-
T ss_pred             CCCCC-CCeeccCCCccc
Confidence            99999 999999987643

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=2.9e-10  Score=91.87  Aligned_cols=63  Identities=22%  Similarity=0.518  Sum_probs=50.0

Q ss_pred             cccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCccccccccccccccccccccccccc
Q 018874           87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR  165 (349)
Q Consensus        87 yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt~  165 (349)
                      .|.++|++|+.|.|.+|+ .|+|+|..+++...+.                                        ..++.
T Consensus        18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~----------------------------------------~~~~~   57 (98)
T 2e5s_A           18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDTS----------------------------------------DNTVT   57 (98)
T ss_dssp             SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTT----------------------------------------TCEEE
T ss_pred             hhhhhhHHHhcCcCCCCCCCCCCcCCchhcccccc----------------------------------------CCccc
Confidence            477999999999999999 7999998866443211                                        13567


Q ss_pred             cCccccccCCCCCCCCCCCCCCcccc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      +|.. +..|.|.++ .|+|+|...++
T Consensus        58 vC~~-flkG~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           58 VCMD-YIKGRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             BCHH-HHHTCCCCT-TCCSBCCCHHH
T ss_pred             cchh-hccCCCCCC-CcCccCChHHH
Confidence            9964 456999999 99999999775

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=1.4e-09  Score=87.88  Aligned_cols=65  Identities=28%  Similarity=0.555  Sum_probs=51.2

Q ss_pred             cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .|..+|+.|.. |.|.+|+ .|+|+|+......                               .+...+..+|.+|+ .
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-------------------------------~~~~~~~~vC~~fl-k   64 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI-------------------------------DTSDNTVTVCMDYI-K   64 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-------------------------------CTTTCEEEBCHHHH-H
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-------------------------------cccCCccccchhhc-c
Confidence            46679976665 9999999 7999999865311                               11245667899998 7


Q ss_pred             ccCCCCCCCCCCCCcccccc
Q 018874          241 GYCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~ELr~  260 (349)
                      |.|.++ .|+|.|...+|+.
T Consensus        65 G~C~r~-~C~y~H~~~~l~~   83 (98)
T 2e5s_A           65 GRCMRE-KCKYFHPPAHLQA   83 (98)
T ss_dssp             TCCCCT-TCCSBCCCHHHHH
T ss_pred             CCCCCC-CcCccCChHHHHH
Confidence            999999 9999999888754

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=4.4e-09  Score=79.15  Aligned_cols=39  Identities=38%  Similarity=0.800  Sum_probs=33.2

Q ss_pred             cccCCCcccccccccccccccCCCCCCCCCCCCccccccC
Q 018874          222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF  261 (349)
Q Consensus       222 ~~~~p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ELr~~  261 (349)
                      ...+++..+++||+.| .+|.|+||++|+||||++||+.+
T Consensus        11 W~~R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~   49 (69)
T 2d9m_A           11 WQHRFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW   49 (69)
T ss_dssp             CCCCCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred             ccccCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence            4455566678999999 58999999999999999999874

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.69  E-value=7.5e-09  Score=81.10  Aligned_cols=62  Identities=24%  Similarity=0.557  Sum_probs=48.2

Q ss_pred             ccccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt  164 (349)
                      +.|..+|++|+.|.|.+|+ .|+|+|....+..                                          ...+.
T Consensus         6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------------------------------------------~~~~~   43 (83)
T 3d2n_A            6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV------------------------------------------ENGRV   43 (83)
T ss_dssp             GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE------------------------------------------ETTEE
T ss_pred             cccchhcHHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCce
Confidence            5788999999999999997 9999998643211                                          01245


Q ss_pred             ccCccccccCCCCCCCCCCCCCCcccc
Q 018874          165 RHCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      .+|..| ..|.|.++ .|+|.|....+
T Consensus        44 ~vC~df-lkG~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A           44 IACFDS-LKGRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             ECCHHH-HTTCCCCS-SCSSCCCCHHH
T ss_pred             eehhHh-hhccccCC-CcceeCChHHH
Confidence            689655 56999998 99999998765

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.49  E-value=5e-08  Score=76.39  Aligned_cols=63  Identities=22%  Similarity=0.454  Sum_probs=48.9

Q ss_pred             cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .+..+|+.|.. |.|.+|+ .|+|+|.......                                 ...+..+|.+|+ .
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------------------------------~~~~~~vC~dfl-k   51 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------------------------------ENGRVIACFDSL-K   51 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------------------------------ETTEEECCHHHH-T
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeehhHhh-h
Confidence            46678987766 9999997 9999999864210                                 012346799998 7


Q ss_pred             ccCCCCCCCCCCCCcccccc
Q 018874          241 GYCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~ELr~  260 (349)
                      |.|.++ .|+|.|....|..
T Consensus        52 G~C~r~-~C~y~H~~~~l~~   70 (83)
T 3d2n_A           52 GRCSRE-NCKYLHPPPHLKT   70 (83)
T ss_dssp             TCCCCS-SCSSCCCCHHHHH
T ss_pred             ccccCC-CcceeCChHHHHH
Confidence            999999 9999999887654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.49  E-value=4.1e-08  Score=77.86  Aligned_cols=62  Identities=24%  Similarity=0.555  Sum_probs=47.9

Q ss_pred             ccccccccccccCCCCCCC-CCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (349)
Q Consensus        86 ~yKTklC~~f~~G~C~~G~-~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt  164 (349)
                      ..+..+|+.|+.|.|.+|+ .|+|+|....+..-                                          .-+.
T Consensus        14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~------------------------------------------~~~~   51 (89)
T 2rpp_A           14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE------------------------------------------NGRV   51 (89)
T ss_dssp             SSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB------------------------------------------TTBE
T ss_pred             cchhhhchHHhcCCCCCCCCCCCCcCCCcccccc------------------------------------------CCce
Confidence            4577899999999999998 99999977442110                                          0145


Q ss_pred             ccCccccccCCCCCCCCCCCCCCcccc
Q 018874          165 RHCKKFYTEEGCPYGENCTFLHDEQSK  191 (349)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~  191 (349)
                      ..|..| ..|.|.++ .|+|.|....+
T Consensus        52 ~vC~df-lkG~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           52 IACFDS-LKGRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             EBCHHH-HHTCCCCT-TCCSBCCCHHH
T ss_pred             eeehhh-hhCcCCCC-CcceecCHHHH
Confidence            689655 56999987 99999998765

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=3.4e-08  Score=74.32  Aligned_cols=30  Identities=40%  Similarity=0.812  Sum_probs=27.9

Q ss_pred             ccccccccccCCCCCCCCCCCCCCccccCC
Q 018874           88 KTKLCCKFRNGTCPYITNCNFAHSIEELRR  117 (349)
Q Consensus        88 KTklC~~f~~G~C~~G~~C~FaH~~eelR~  117 (349)
                      |++||.+|.+|.|+||+.|.|||+.+|||.
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            459999999999999999999999999986

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.23  E-value=3.9e-07  Score=72.20  Aligned_cols=63  Identities=24%  Similarity=0.481  Sum_probs=48.9

Q ss_pred             cccccCccccccCCCCCCC-CCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .+..+|+.|.. |.|.+|+ .|+|+|.......+                                 .-+..+|.+|+ .
T Consensus        15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~---------------------------------~~~~~vC~dfl-k   59 (89)
T 2rpp_A           15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE---------------------------------NGRVIACFDSL-K   59 (89)
T ss_dssp             SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB---------------------------------TTBEEBCHHHH-H
T ss_pred             chhhhchHHhc-CCCCCCCCCCCCcCCCcccccc---------------------------------CCceeeehhhh-h
Confidence            35668987766 9999998 99999988642110                                 12356799998 8


Q ss_pred             ccCCCCCCCCCCCCcccccc
Q 018874          241 GYCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~ELr~  260 (349)
                      |.|.++ .|+|.|....|..
T Consensus        60 G~C~r~-~Cky~H~~~hl~~   78 (89)
T 2rpp_A           60 GRCSRE-NCKYLHPPTHLKT   78 (89)
T ss_dssp             TCCCCT-TCCSBCCCHHHHH
T ss_pred             CcCCCC-CcceecCHHHHHH
Confidence            999998 9999999887654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.94  E-value=5e-06  Score=75.91  Aligned_cols=103  Identities=24%  Similarity=0.555  Sum_probs=61.3

Q ss_pred             cccccccccCCCC----CCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccccccc
Q 018874           89 TKLCCKFRNGTCP----YITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG  164 (349)
Q Consensus        89 TklC~~f~~G~C~----~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~~yKt  164 (349)
                      .-||++|+-|.|.    .+..|+|+|++...    .|+ .+...+....-     ..++..       ..--++.+..-.
T Consensus        89 LHLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~----~N~-~vLk~h~l~~L-----~~~eL~-------~LLLQnDp~lLP  151 (229)
T 3u9g_A           89 LHLCKLNLLGRCHYAQSQRNLCKYSHDVLSE----QNF-QILKNHELSGL-----NQEELA-------CLLVQSDPFFLP  151 (229)
T ss_dssp             BCCCHHHHTTCCGGGTCCSSCCSSCSCTTCH----HHH-HHHHHTTCTTC-----CHHHHH-------HHHHTTCGGGSC
T ss_pred             eeechhhhcCcCCcccCCCCCcccccccCch----hHH-HHHHHcCcccC-----CHhHhh-------heeccCCCccCc
Confidence            3789999999993    45789999988331    111 01111100000     000000       000001112234


Q ss_pred             ccCccccc----cCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCcccccCCCCCccccCCCccccccccccccc
Q 018874          165 RHCKKFYT----EEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT  240 (349)
Q Consensus       165 ~~C~~f~~----~G~C~~G~~C~f~H~~~e~~res~~~s~~ps~~~~~~~~~~~~~~~~~~~~~~p~~~Kt~lC~~f~~~  240 (349)
                      .+|.+| +    .|.|.+++.|..+|                                              +|.+|. +
T Consensus       152 eiC~~Y-kG~g~~g~C~~~~~C~kLH----------------------------------------------IC~~Fl-~  183 (229)
T 3u9g_A          152 EICKSY-KGEGRKQTCGQPQPCERLH----------------------------------------------ICEHFT-R  183 (229)
T ss_dssp             CBCTTC-CCSSSCCSCSSSSCCCSBC----------------------------------------------SCHHHH-T
T ss_pred             hHHHHh-CCCCCCCcCCCCCCCccee----------------------------------------------ccchhh-c
Confidence            589877 5    26899999999887                                              388887 8


Q ss_pred             ccCCCCCCCCCCCCccc
Q 018874          241 GYCPFGNKCHFAHGIQE  257 (349)
Q Consensus       241 G~C~~G~~C~FaHg~~E  257 (349)
                      |.|.| ..|.-.|...+
T Consensus       184 G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          184 GNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             TCCCC-SSCSSCCCTTS
T ss_pred             CCcCC-CCccCccCccC
Confidence            99999 79999998743

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.38  E-value=0.00089  Score=46.80  Aligned_cols=28  Identities=36%  Similarity=0.932  Sum_probs=25.5

Q ss_pred             ccccccccccccccCCCCCCCCCCCCcc
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHGIQ  256 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg~~  256 (349)
                      .++.+|..|...|+|++|..|.|.|..+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4678999999999999999999999864

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.31  E-value=0.00064  Score=52.59  Aligned_cols=20  Identities=20%  Similarity=0.524  Sum_probs=16.4

Q ss_pred             ccccccccCCCCCCCCCCCCCCc
Q 018874           90 KLCCKFRNGTCPYITNCNFAHSI  112 (349)
Q Consensus        90 klC~~f~~G~C~~G~~C~FaH~~  112 (349)
                      ++|+++.  .|.+ ..|.|.|..
T Consensus        10 e~CKf~~--~Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A           10 EQCKFGT--HCTN-KRCKYRHAR   29 (80)
Confidence            7798875  7888 899999954

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.11  E-value=0.0014  Score=45.88  Aligned_cols=29  Identities=28%  Similarity=0.531  Sum_probs=26.2

Q ss_pred             cccccCccccccCCCCCCCCCCCCCCccc
Q 018874          162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                      .++.+|..|...|.|++|..|.++|+.+-
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            46779999999999999999999999863

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=93.04  E-value=0.07  Score=48.68  Aligned_cols=47  Identities=30%  Similarity=0.705  Sum_probs=39.2

Q ss_pred             cccccccccccc-----CCCCCCCCCCCCCCccccCCCCCchHHHHHhhhhhhcccCCCCcccccccccccccccccccc
Q 018874           86 FFKTKLCCKFRN-----GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQR  160 (349)
Q Consensus        86 ~yKTklC~~f~~-----G~C~~G~~C~FaH~~eelR~pp~~~~e~~~~~~e~~~~~~~~~r~~~q~P~~~s~~~~~~~~~  160 (349)
                      ++--++|.+| .     |.|.+++.|...|                                                  
T Consensus       148 ~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH--------------------------------------------------  176 (229)
T 3u9g_A          148 FFLPEICKSY-KGEGRKQTCGQPQPCERLH--------------------------------------------------  176 (229)
T ss_dssp             GGSCCBCTTC-CCSSSCCSCSSSSCCCSBC--------------------------------------------------
T ss_pred             ccCchHHHHh-CCCCCCCcCCCCCCCccee--------------------------------------------------
Confidence            4456899999 6     4899999999999                                                  


Q ss_pred             ccccccCccccccCCCCCCCCCCCCCCccc
Q 018874          161 SYKGRHCKKFYTEEGCPYGENCTFLHDEQS  190 (349)
Q Consensus       161 ~yKt~~C~~f~~~G~C~~G~~C~f~H~~~e  190 (349)
                           +|. ++..|.|++ ..|.-+|+..+
T Consensus       177 -----IC~-~Fl~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          177 -----ICE-HFTRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             -----SCH-HHHTTCCCC-SSCSSCCCTTS
T ss_pred             -----ccc-hhhcCCcCC-CCccCccCccC
Confidence                 784 556699999 89999998854

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.96  E-value=0.049  Score=50.21  Aligned_cols=23  Identities=30%  Similarity=0.717  Sum_probs=21.4

Q ss_pred             ccccccccCCCCCCCCCCCCCCc
Q 018874           90 KLCCKFRNGTCPYITNCNFAHSI  112 (349)
Q Consensus        90 klC~~f~~G~C~~G~~C~FaH~~  112 (349)
                      .+|.||..|.|.+|+.|.|.|.+
T Consensus        71 ~~C~ffakG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           71 FFCLFFAKGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred             eEcCccccCCCCCCCCCCccCCC
Confidence            58999999999999999999964

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.32  E-value=0.068  Score=49.21  Aligned_cols=25  Identities=32%  Similarity=0.790  Sum_probs=21.5

Q ss_pred             cccccccccccCCCCCCCCCCCCccc
Q 018874          232 RICNKWELTGYCPFGNKCHFAHGIQE  257 (349)
Q Consensus       232 ~lC~~f~~~G~C~~G~~C~FaHg~~E  257 (349)
                      .+|.||. .|.|.+|+.|.|.|....
T Consensus        71 ~~C~ffa-kG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFA-KGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred             eEcCccc-cCCCCCCCCCCccCCCCC
Confidence            3799998 699999999999997543

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=85.83  E-value=0.16  Score=39.13  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=14.9

Q ss_pred             ccCccccccCCCCCCCCCCCCCCcc
Q 018874          165 RHCKKFYTEEGCPYGENCTFLHDEQ  189 (349)
Q Consensus       165 ~~C~~f~~~G~C~~G~~C~f~H~~~  189 (349)
                      ..|+++   -.|.. ..|.|.|...
T Consensus        10 e~CKf~---~~Ctn-~~C~f~Hp~~   30 (80)
T 2lhn_A           10 EQCKFG---THCTN-KRCKYRHARS   30 (80)
Confidence            478433   36887 8999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-13
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	3e-10
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-05
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	3e-13
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	8e-11
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	2e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	4e-12
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	8e-08
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-07

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
           + +KT +C  +E +G C +G KC FAHG  EL
Sbjct: 2   TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 33

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 87  FKTKLCCKF-RNGTCPYITNCNFAHSIEELR 116
           +KT+LC  F  +GTC Y   C FAH   ELR
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ F     C YGE C F H   
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (148), Expect = 3e-13
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEL 258
             S +KT +C  +  +G C +G KC FAHG+ EL
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL 36

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (131), Expect = 8e-11
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 86  FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRP 118
            +KT+LC  +  +G C Y   C FAH + ELR+ 
Sbjct: 6   RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ +     C YG  C F H   
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAHGLG 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
           +   +KT +C  +   G+CP+G +CHF H   E
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (109), Expect = 8e-08
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 87  FKTKLCCKFRN-GTCPYITNCNFAHSIEE 114
           +KT+LC  F   G CPY   C+F H+ +E
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 3e-07
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
           YK   C+ F+T   CPYG  C F+H+  
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNAD 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.22
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.2
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.15
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.09
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.06
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.87
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.9
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.68
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.8
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.44
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.78
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	92.34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.8e-12  Score=85.43  Aligned_cols=37  Identities=41%  Similarity=0.943  Sum_probs=33.9

Q ss_pred             CCCcccccccccccccccCCCCCCCCCCCCccccccC
Q 018874          225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQELHRF  261 (349)
Q Consensus       225 ~p~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ELr~~  261 (349)
                      .+..|||++|++|...|.|++|++|+|||+++|||..
T Consensus         3 ~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           3 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            3468999999999989999999999999999999874

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-12  Score=84.95  Aligned_cols=34  Identities=44%  Similarity=1.060  Sum_probs=32.0

Q ss_pred             CcccccccccccccccCCCCCCCCCCCCcccccc
Q 018874          227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQELHR  260 (349)
Q Consensus       227 ~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~ELr~  260 (349)
                      ..|||++|++|...|.|++|++|+|||+++|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            4799999999998999999999999999999985

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=9.3e-12  Score=82.88  Aligned_cols=35  Identities=40%  Similarity=0.880  Sum_probs=32.2

Q ss_pred             ccccccccccccc-cCCCCCCCCCCCCCCccccCCC
Q 018874           84 KMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRP  118 (349)
Q Consensus        84 ~~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~p  118 (349)
                      ..+|||+||++|. .|.|++|+.|.|||+.+|||.|
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            4689999999998 6999999999999999999975

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7.8e-12  Score=81.35  Aligned_cols=33  Identities=48%  Similarity=0.956  Sum_probs=30.5

Q ss_pred             cccccccccccc-cCCCCCCCCCCCCCCccccCC
Q 018874           85 MFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRR  117 (349)
Q Consensus        85 ~~yKTklC~~f~-~G~C~~G~~C~FaH~~eelR~  117 (349)
                      ..|||+||++|. .|.|++|++|.|||+.+|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            479999999998 699999999999999999984

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-11  Score=79.13  Aligned_cols=31  Identities=39%  Similarity=1.142  Sum_probs=29.1

Q ss_pred             CcccccccccccccccCCCCCCCCCCCCccc
Q 018874          227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQE  257 (349)
Q Consensus       227 ~~~Kt~lC~~f~~~G~C~~G~~C~FaHg~~E  257 (349)
                      +.|||+||++|...|.|+||++|+|||+++|
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            4799999999999999999999999999876

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.8e-10  Score=73.77  Aligned_cols=30  Identities=43%  Similarity=0.921  Sum_probs=27.2

Q ss_pred             cccccccccccc-cCCCCCCCCCCCCCCccc
Q 018874           85 MFFKTKLCCKFR-NGTCPYITNCNFAHSIEE  114 (349)
Q Consensus        85 ~~yKTklC~~f~-~G~C~~G~~C~FaH~~ee  114 (349)
                      .+|||+||++|. .|.|+||++|.|||+.+|
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            369999999998 699999999999999864

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.4e-06  Score=50.96  Aligned_cols=25  Identities=32%  Similarity=0.869  Sum_probs=22.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCc
Q 018874          230 KTRICNKWELTGYCPFGNKCHFAHGI  255 (349)
Q Consensus       230 Kt~lC~~f~~~G~C~~G~~C~FaHg~  255 (349)
                      |..+|+||. +|+|.+|+.|.|.|.+
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccCC
Confidence            457899998 9999999999999974

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=9.3e-06  Score=48.39  Aligned_cols=24  Identities=33%  Similarity=0.771  Sum_probs=22.4

Q ss_pred             ccccccccccCCCCCCCCCCCCCC
Q 018874           88 KTKLCCKFRNGTCPYITNCNFAHS  111 (349)
Q Consensus        88 KTklC~~f~~G~C~~G~~C~FaH~  111 (349)
                      |.++|.+|.+|.|.+|++|.|.|.
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhheeeeecCCcCcccccC
Confidence            458999999999999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0013  Score=45.31  Aligned_cols=22  Identities=36%  Similarity=0.878  Sum_probs=20.2

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 018874          233 ICNKWELTGYCPFGNKCHFAHG  254 (349)
Q Consensus       233 lC~~f~~~G~C~~G~~C~FaHg  254 (349)
                      .|+||...+.|-.|++|+|.|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            4999997789999999999995

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0022  Score=44.15  Aligned_cols=23  Identities=39%  Similarity=0.889  Sum_probs=20.5

Q ss_pred             cCccccccCCCCCCCCCCCCCCc
Q 018874          166 HCKKFYTEEGCPYGENCTFLHDE  188 (349)
Q Consensus       166 ~C~~f~~~G~C~~G~~C~f~H~~  188 (349)
                      +|+.|+..+.|-.|+.|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69888888899999999999954

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.012  Score=36.56  Aligned_cols=26  Identities=35%  Similarity=0.949  Sum_probs=23.3

Q ss_pred             ccccccccccccccCCCCCCCCCCCC
Q 018874          229 WKTRICNKWELTGYCPFGNKCHFAHG  254 (349)
Q Consensus       229 ~Kt~lC~~f~~~G~C~~G~~C~FaHg  254 (349)
                      -.+.+|..|...|.||.|..|...|.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            45678999999999999999999996

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.02  Score=35.53  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=24.2

Q ss_pred             cccccCccccccCCCCCCCCCCCCCCc
Q 018874          162 YKGRHCKKFYTEEGCPYGENCTFLHDE  188 (349)
Q Consensus       162 yKt~~C~~f~~~G~C~~G~~C~f~H~~  188 (349)
                      ..+.+|..|...|.|+.|..|..+|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            456799999999999999999999974