Citrus Sinensis ID: 018896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEcccccccccccEEccHHccHHHHHcccccccccccEccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHcHEEEEcccccccHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEEccEEEEEEccccccHHHHcccccccccHHHHcccccccccccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccEEEEEEccccccEEEHHHHHHcccccHHHHHccc
Coil and Loop (DISEMBL)
maatmtpyqklnlshcfitkscdfvlfwrppsqgrtsfsssaevssKKLQLVTAsgstsnnalpvsqsvppitaskvkrhtisvfvgdesgiINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKvedisnephVERELMLIKLngdtstwpeIMWLVDIFRAKVvdisehaltievtgdpgkMVAVQRNLSKFGIKELARTGKIALrreklgdtapfwnfsaasypdleekkrtgifipetnqslngnanvdtssrgdvypvepyddfsanqvldahwgilydedpsglrshtlsmlvnntpgvlNIVTGVISRRGYNIQVISNNL
Flexible Loop (DISEMBL)
maatmtpyqklnlshCFITKSCDFVLFWRPPSQGRTsfsssaevsSKKLQLVTASgstsnnalpvsqsvppitaskvKRHTIsvfvgdesgiiNRIAGVFARRGYNIESlavglnvdKALFTIVVSGTERVLRQVVEQLNKLVnvikvedisnephvERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAltievtgdpgkmVAVQRNLSKFGIKELARTGKIAlrreklgdtapfwnfsaasypdleEKKRTGIFipetnqslngnanvdTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTgvisrrgyniqvisnnl
Low Complexity Region (SEG)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTsfsssaevssKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Disordered region (IsUnstruct)
*******YQKLNLSHCFITKSCDFVLFWR***********************************************VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE***RTGIFI*******************DVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI****
Disordered Region (DISOPRED)
*******************************************************************************HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR******************************************************VEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Disordered Region (DISEMBL)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQ*****************************LPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Disordered Region (DISPRO)
****MTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSS********************************ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR**********************RGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9FFF4	477	Acetolactate synthase sma	yes	no	0.893	0.654	0.684	1e-122
Q93YZ7	491	Acetolactate synthase sma	no	no	0.799	0.568	0.672	1e-113
Q9SMC2	449	Acetolactate synthase sma	N/A	no	0.724	0.563	0.733	1e-106
Q55141	172	Acetolactate synthase sma	N/A	no	0.441	0.895	0.589	1e-45
Q9TLY1	172	Acetolactate synthase sma	N/A	no	0.438	0.889	0.567	5e-45
O78451	169	Acetolactate synthase sma	yes	no	0.435	0.899	0.594	3e-44
Q1XDQ7	174	Acetolactate synthase sma	N/A	no	0.438	0.879	0.554	2e-42
Q9MS98	181	Acetolactate synthase sma	N/A	no	0.438	0.845	0.541	2e-41
P51230	174	Acetolactate synthase sma	N/A	no	0.469	0.942	0.505	3e-41
P65161	168	Putative acetolactate syn	yes	no	0.441	0.916	0.467	2e-34

>sp|Q9FFF4|ILVH1_ARATH Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 254/317 (80%), Gaps = 5/317 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQVIS 346
           ++TG ISRRGYNIQ ++
Sbjct: 323 LITGAISRRGYNIQSLA 339

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YZ7|ILVH2_ARATH Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1

 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/299 (67%), Positives = 238/299 (79%), Gaps = 20/299 (6%)

Query: 56  GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
           G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAVGLN
Sbjct: 65  GKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN 122

Query: 116 VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPE 175
            DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +  E
Sbjct: 123 RDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAE 182

Query: 176 IMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
           IMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRREK+G
Sbjct: 183 IMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMG 242

Query: 236 DTAPFWNFSAASYPDLEEK--------KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEP 287
            TAPFW FSAASYPDL+E+         + G  +P+           +TS+ GDVYPVEP
Sbjct: 243 ATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK----------ETSAGGDVYPVEP 292

Query: 288 YDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           + D   +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQ ++
Sbjct: 293 FFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLA 351

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMC2|ILVH_NICPL Acetolactate synthase small subunit 1, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/255 (73%), Positives = 215/255 (84%), Gaps = 2/255 (0%)

Query: 92  IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151
           +INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QV+EQL KLVNVIKVED+
Sbjct: 37  MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVMEQLQKLVNVIKVEDL 96

Query: 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQR 211
           S EP VERELMLIK++ D     E+MWLVD+FRAK+VDIS+ +LTIEVTGDPGKMVAVQR
Sbjct: 97  SKEPQVERELMLIKISADPKYRAEVMWLVDVFRAKIVDISDQSLTIEVTGDPGKMVAVQR 156

Query: 212 NLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGN 271
           NLSKFGI+E+ARTGKIALRREK+G++APFW FSAASYPDLE     G       ++ NG 
Sbjct: 157 NLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDLEGAMSAGTISRTIKRTPNGE 216

Query: 272 ANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIV 331
           +   + + GDVYPVE  D+   +QVLDAHWG+L DED SGLRSHTLSMLVN+TPGVLNIV
Sbjct: 217 SM--SMAEGDVYPVETDDNSGVSQVLDAHWGVLNDEDTSGLRSHTLSMLVNDTPGVLNIV 274

Query: 332 TGVISRRGYNIQVIS 346
           TGV +RRGYNIQ ++
Sbjct: 275 TGVFARRGYNIQSLA 289

Regulatory subunit of acetohydroxy-acid synthase. Probably involved in feedback inhibition by branched-chain amino acids. Not involved in herbicide tolerance.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q55141|ILVH_SYNY3 Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 120/156 (76%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G++ RIAG+FARRG+NIESLAVG     D +  T+VV G E  + Q+ 
Sbjct: 2   KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVNVIKV+DI+  P VERELML+K++ +     E++ L  +FRA++VDISE  +T
Sbjct: 62  KQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           IEV GDPGKMVA+ + L+KFGIKE+ARTGKIAL RE
Sbjct: 122 IEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRE 157

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9TLY1|ILVH_CYACA Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1

 Score =  182 bits (461), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 123/155 (79%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           ++T+SV V DE+G++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+ 
Sbjct: 2   KYTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++KV++I+  P VEREL+L+K+N  TS+ PEI+ ++ +FRAKVVD+SE+ L 
Sbjct: 62  KQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLV 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           +E+TGDPGK+ A+Q+ L KFGI E+ARTGKIAL R
Sbjct: 122 LELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTR 156

Cyanidium caldarium (taxid: 2771)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|O78451|ILVH_GUITH Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 120/158 (75%), Gaps = 6/158 (3%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDKALFTIVVSGTERVLRQ 134
           +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    L + +   T+VV   ER + Q
Sbjct: 2   KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISR--ITMVVPSDERTIEQ 59

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL KLVN++KVEDI+N P VERELMLIKL   T    E + +++IFRAKVVD+SE  
Sbjct: 60  LTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDF 119

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           L IEVTGDPGK+VA+++ LSKF I E+ RTGKI+L RE
Sbjct: 120 LIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRE 157

Guillardia theta (taxid: 55529)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q1XDQ7|ILVH_PORYE Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 119/155 (76%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++ T  E + +V IFRAK+VDI+E  L 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLI 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IEVTGDPGK+VA+++ L+KFGI E+ARTGKI L R
Sbjct: 122 IEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVR 156

Porphyra yezoensis (taxid: 2788)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9MS98|ILVH_GALSU Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 120/157 (76%), Gaps = 4/157 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA---LFTIVVSGTERVLRQV 135
           +HT+SV V DESG++ RI+G+FARRG+NI+SLAVG   +KA     T+V+ G  R++ Q+
Sbjct: 2   KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVG-PAEKAGISRITMVIRGDNRIIEQI 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            + L KLVNV+K++DI+N P VERELMLIK+    +   EI+ + +IFRA+VVD+SE  +
Sbjct: 61  TKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFI 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +E+TGDPGK+ A+++ L K+GI E+ARTGKIAL RE
Sbjct: 121 ILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRE 157

Galdieria sulphuraria (taxid: 130081)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P51230|ILVH_PORPU Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 8/172 (4%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++    E + +V IFRA VVDI+E  + 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLII 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR------EKLGDTAPFWN 242
           +EVTGDPGK+VA+++ L+KFGI E+ARTGKI+L R      E L D    +N
Sbjct: 122 VEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLKDKVVAYN 173

Porphyra purpurea (taxid: 2787)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P65161|ILVH_MYCTU Putative acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQV 135
           K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct: 4   KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct: 64  TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R
Sbjct: 124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
359495876	476	PREDICTED: uncharacterized protein LOC10	0.793	0.581	0.810	1e-125
449442655	480	PREDICTED: uncharacterized protein LOC10	0.902	0.656	0.681	1e-123
224112371	414	predicted protein [Populus trichocarpa]	0.767	0.647	0.780	1e-120
15237321	477	protein valine-tolerant 1 [Arabidopsis t	0.893	0.654	0.684	1e-120
224098798	414	predicted protein [Populus trichocarpa]	0.776	0.654	0.779	1e-120
222423112	477	AT5G16290 [Arabidopsis thaliana]	0.893	0.654	0.681	1e-120
297807659	476	hypothetical protein ARALYDRAFT_488480 [	0.893	0.655	0.682	1e-119
225434187	482	PREDICTED: uncharacterized protein LOC10	0.845	0.612	0.706	1e-119
441477737	767	B3-type transcription factor [Ricinus co	0.893	0.406	0.684	1e-118
147792338	451	hypothetical protein VITISV_043824 [Viti	0.773	0.598	0.761	1e-118

>gi|359495876|ref|XP_002266924.2| PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera] gi|296083398|emb|CBI23353.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/279 (81%), Positives = 241/279 (86%), Gaps = 2/279 (0%)

Query: 68  SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127
           S PPI  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVVSG
Sbjct: 62  SAPPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSG 121

Query: 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKV 187
           TE VLRQVVEQLNKLVNV+KV+D+S EP VERELMLIKLN D S   EIMWLVDIFRAK+
Sbjct: 122 TETVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKI 181

Query: 188 VDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAAS 247
           VDISEH+LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK+G+TAPFW FSAAS
Sbjct: 182 VDISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAAS 241

Query: 248 YPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE 307
           YPDLEE       +    + LNGN +  TS  GDVYPVEP++DFS N VLD HWG L DE
Sbjct: 242 YPDLEETIPVNALVRNVKRPLNGNPS--TSPGGDVYPVEPFNDFSVNPVLDPHWGALNDE 299

Query: 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           D SGLRSHTLSMLVN+TPGVLNIVTGVISRR YNIQ ++
Sbjct: 300 DSSGLRSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLA 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442655|ref|XP_004139096.1| PREDICTED: uncharacterized protein LOC101208212 [Cucumis sativus]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/330 (68%), Positives = 264/330 (80%), Gaps = 15/330 (4%)

Query: 29  RPPSQG---RTSFSSSAEVSSKKLQ---------LVTASGSTSNNALPVSQSVPPITASK 76
           +PP      R  FS+S  V  +++Q         L  +S + ++NA+ V+ S  P   S 
Sbjct: 16  KPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDNAVTVTDSSRPSIRST 75

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           V RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV+GTE VLRQVV
Sbjct: 76  VMRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVTGTENVLRQVV 135

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VEREL+L+KLN D+ST  EIMWLVDIFR K+VDISEH++T
Sbjct: 136 EQLNKLVNVIKVEDISRQPQVERELVLMKLNADSSTRAEIMWLVDIFRGKIVDISEHSVT 195

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR 256
           IEVTGDPGK+VAV+RN SKFGI+ELARTGKIALRREK G+TAPFW FSAASYPDLE+ + 
Sbjct: 196 IEVTGDPGKLVAVERNFSKFGIRELARTGKIALRREKRGETAPFWRFSAASYPDLEDSRP 255

Query: 257 TGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHT 316
              F+ +  QSL G     ++S GDVYPVEPY+ F ++QVLDAHWG+LYDED SG +SHT
Sbjct: 256 INSFVEDAIQSLKGQV---STSTGDVYPVEPYESFHSDQVLDAHWGVLYDEDSSGHQSHT 312

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           LSMLVN+ PGVLN+VTG+ISRRGYNIQ ++
Sbjct: 313 LSMLVNDYPGVLNVVTGIISRRGYNIQSLA 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112371|ref|XP_002316167.1| predicted protein [Populus trichocarpa] gi|222865207|gb|EEF02338.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/278 (78%), Positives = 240/278 (86%), Gaps = 10/278 (3%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           ++RHTISVFVGDE GIINRIAGVFARRGY+IESLAVGLN DKALFTIVV GTE+VLRQVV
Sbjct: 1   MQRHTISVFVGDEIGIINRIAGVFARRGYSIESLAVGLNKDKALFTIVVCGTEKVLRQVV 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VERELMLIKLN + ST  EIMWLVDIFRAK+VDISEH+LT
Sbjct: 61  EQLNKLVNVIKVEDISRDPQVERELMLIKLNANPSTRAEIMWLVDIFRAKIVDISEHSLT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE---- 252
           IEVTGDPGKM AVQRNLSKFGIKELARTGKIAL+RE +G+TAPFW FSAASYPDL+    
Sbjct: 121 IEVTGDPGKMAAVQRNLSKFGIKELARTGKIALKRETMGETAPFWGFSAASYPDLDRIPS 180

Query: 253 ----EKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDED 308
               ++  T  F    + SLNG+    +SS+GDVY VEPYDDF ANQVLDAHWG+LYDED
Sbjct: 181 GVALDRNSTNTFAGNGDLSLNGSNT--SSSKGDVYAVEPYDDFLANQVLDAHWGVLYDED 238

Query: 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
            +GLRSHTLSMLVNN PGVLNI+TGVISRRGYNIQ ++
Sbjct: 239 SNGLRSHTLSMLVNNCPGVLNILTGVISRRGYNIQSLA 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237321|ref|NP_197133.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|30685790|ref|NP_850829.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|75271992|sp|Q9FFF4.1|ILVH1_ARATH RecName: Full=Acetolactate synthase small subunit 1, chloroplastic; AltName: Full=Acetohydroxy-acid synthase small subunit; Short=AHAS; Short=ALS; AltName: Full=Protein valine-tolerant 1; Flags: Precursor gi|9759111|dbj|BAB09596.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|63003744|gb|AAY25401.1| At5g16290 [Arabidopsis thaliana] gi|110742103|dbj|BAE98982.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|332004889|gb|AED92272.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|332004890|gb|AED92273.1| protein valine-tolerant 1 [Arabidopsis thaliana]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 254/317 (80%), Gaps = 5/317 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQVIS 346
           ++TG ISRRGYNIQ ++
Sbjct: 323 LITGAISRRGYNIQSLA 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098798|ref|XP_002311270.1| predicted protein [Populus trichocarpa] gi|222851090|gb|EEE88637.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/277 (77%), Positives = 240/277 (86%), Gaps = 6/277 (2%)

Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQV 135
           +++RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GTE+VLRQV
Sbjct: 1   RLQRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVCGTEKVLRQV 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
           VEQLNKLVNVIKV+DIS EP VERELMLIK N D ST  E+MWLVDIFRAK+VDISE++L
Sbjct: 61  VEQLNKLVNVIKVDDISREPQVERELMLIKFNADPSTRAEVMWLVDIFRAKIVDISENSL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKK 255
           TIEVTGDPGKM A+QRNLSKFGIKELARTGKIALRRE++G+TAPFWNFSAASYPDLE   
Sbjct: 121 TIEVTGDPGKMAAIQRNLSKFGIKELARTGKIALRRERMGETAPFWNFSAASYPDLERVP 180

Query: 256 RTGIFIPETNQSLNGNA------NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDP 309
                   + +++ GNA      +  +SS+GDVYPVEPYDDF  N VLDAHWG+LYDED 
Sbjct: 181 SGVALARNSTKTVAGNANLSLNGSNSSSSKGDVYPVEPYDDFLMNPVLDAHWGVLYDEDS 240

Query: 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           +GLRSHTLSMLVNN PGVLNIVTGVISRRGYNIQ ++
Sbjct: 241 NGLRSHTLSMLVNNCPGVLNIVTGVISRRGYNIQSLA 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423112|dbj|BAH19535.1| AT5G16290 [Arabidopsis thaliana]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/317 (68%), Positives = 254/317 (80%), Gaps = 5/317 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGI+E+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIQEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQVIS 346
           ++TG ISRRGYNIQ ++
Sbjct: 323 LITGAISRRGYNIQSLA 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807659|ref|XP_002871713.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata] gi|297317550|gb|EFH47972.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/318 (68%), Positives = 255/318 (80%), Gaps = 6/318 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QS+ P    +V+RHTISVFVGDE
Sbjct: 25  PAKTPNSLQVTPIIDGRKMRNATVLSAASTDKAITTAQSIAPTACDRVRRHTISVFVGDE 84

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 85  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 144

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SEH+LTIEVTGDPGKMVA+
Sbjct: 145 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEHSLTIEVTGDPGKMVAL 204

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPE-TNQSL 268
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L  +  +   + E T  +L
Sbjct: 205 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVNESSSHETVAEKTKLAL 264

Query: 269 NGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVL 328
            GN N   S  GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVL
Sbjct: 265 TGNGN--ASPGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVL 320

Query: 329 NIVTGVISRRGYNIQVIS 346
           N++TG ISRRGYNIQ ++
Sbjct: 321 NLITGAISRRGYNIQSLA 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434187|ref|XP_002279286.1| PREDICTED: uncharacterized protein LOC100261174 [Vitis vinifera] gi|296084341|emb|CBI24729.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/303 (70%), Positives = 248/303 (81%), Gaps = 8/303 (2%)

Query: 50  QLVTASGSTSN------NALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARR 103
           +LV ++ S  N          V+   P    SKV+RHTISVFVGDESG+INRIAGVFARR
Sbjct: 42  KLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMINRIAGVFARR 101

Query: 104 GYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML 163
           GYNI+SLAVGLN DKALFTIVVSGTERVL+QVVEQL+KLVNV+KVEDIS EPHVERELML
Sbjct: 102 GYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTEPHVERELML 161

Query: 164 IKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELAR 223
           IK+N +     EIMWLV+IFRAK+VDISEH++TIEVTGDPGKMVAVQRNLSKFGI+E+AR
Sbjct: 162 IKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLSKFGIREIAR 221

Query: 224 TGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVY 283
           TGKIALRREK+G++APFW FSA+SYPDLE +     F+    ++LN  +  D S  GDVY
Sbjct: 222 TGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSES--DASVGGDVY 279

Query: 284 PVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQ 343
           PVEP D F  N+VLDAHWG+LYDED SGLRSHTLSM+VNN PGVLN+VTGV +RRGYNIQ
Sbjct: 280 PVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGVFARRGYNIQ 339

Query: 344 VIS 346
            ++
Sbjct: 340 SLA 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441477737|dbj|BAM75181.1| B3-type transcription factor [Ricinus communis]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 254/317 (80%), Gaps = 5/317 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQVIS 346
           ++TG ISRRGYNIQ ++
Sbjct: 323 LITGAISRRGYNIQSLA 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792338|emb|CAN61470.1| hypothetical protein VITISV_043824 [Vitis vinifera]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/272 (76%), Positives = 238/272 (87%), Gaps = 2/272 (0%)

Query: 75  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQ 134
           S+V+RHTISVFVGDESG+INRIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+Q
Sbjct: 42  SQVRRHTISVFVGDESGMINRIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQ 101

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           VVEQL+KLVNV+KVEDIS EPHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH+
Sbjct: 102 VVEQLHKLVNVLKVEDISTEPHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHS 161

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEK 254
           +TIEVTGDPGKMVAVQRNLSKFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +
Sbjct: 162 VTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGE 221

Query: 255 KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRS 314
                F+    ++LN  +  D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRS
Sbjct: 222 IPENTFVETRTKTLNSES--DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRS 279

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           HTLSM+VNN PGVLN+VTGV +RRGYNIQ ++
Sbjct: 280 HTLSMVVNNAPGVLNLVTGVFARRGYNIQSLA 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2171292	477	VAT1 "VALINE-TOLERANT 1" [Arab	0.848	0.620	0.714	9e-109
TAIR|locus:2045248	491	AT2G31810 [Arabidopsis thalian	0.830	0.590	0.676	7.9e-101
TIGR_CMR|CHY_0518	170	CHY_0518 "acetolactate synthas	0.438	0.9	0.574	1.2e-40
UNIPROTKB|P65161	168	ilvH "Putative acetolactate sy	0.452	0.940	0.462	9.5e-34
TIGR_CMR|DET_0832	178	DET_0832 "acetolactate synthas	0.438	0.859	0.470	2.9e-32
TIGR_CMR|GSU_1910	163	GSU_1910 "acetolactate synthas	0.449	0.963	0.433	4.7e-32
TIGR_CMR|CHY_1594	164	CHY_1594 "acetolactate synthas	0.438	0.932	0.419	6.4e-28
TIGR_CMR|SPO_2579	186	SPO_2579 "acetolactate synthas	0.489	0.919	0.397	2.2e-25
TIGR_CMR|CPS_3237	165	CPS_3237 "acetolactate synthas	0.449	0.951	0.378	3.6e-25
UNIPROTKB|P00894	163	ilvH "IlvH" [Escherichia coli	0.432	0.926	0.386	2.6e-24

TAIR|locus:2171292 VAT1 "VALINE-TOLERANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 215/301 (71%), Positives = 248/301 (82%)

Query:    47 KKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGY 105
             +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDESGIINRIAGVFARRGY
Sbjct:    43 RKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDESGIINRIAGVFARRGY 102

Query:   106 NIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165
             NIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVED+S EPHVERELMLIK
Sbjct:   103 NIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIK 162

Query:   166 LNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTG 225
             LN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+  NL KFGIKE+ARTG
Sbjct:   163 LNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTG 222

Query:   226 KIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPV 285
             KIALRREK+G+TAPFW FSAASYP L ++        +T  +L GN N   SS GDVYPV
Sbjct:   223 KIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNA--SSGGDVYPV 280

Query:   286 EPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI 345
             EPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN++TG ISRRGYNIQ +
Sbjct:   281 EPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNIQSL 338

Query:   346 S 346
             +
Sbjct:   339 A 339

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0006551 "leucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2045248 AT2G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 199/294 (67%), Positives = 237/294 (80%)

Query:    53 TASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 112
             +  G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct:    62 SVDGKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAV 119

Query:   113 GLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST 172
             GLN DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +
Sbjct:   120 GLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPES 179

Query:   173 WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
               EIMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRRE
Sbjct:   180 RAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRRE 239

Query:   233 KLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFS 292
             K+G TAPFW FSAASYPDL+E+    +       ++      +TS+ GDVYPVEP+ D  
Sbjct:   240 KMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK--ETSAGGDVYPVEPFFDPK 297

Query:   293 ANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
              +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQ ++
Sbjct:   298 VHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLA 351

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_0518 CHY_0518 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 89/155 (57%), Positives = 119/155 (76%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
             RHT++V V +  G++ R+AG+F+RRGYNI+SLAVG   N D +  TIVV G +RVL QVV
Sbjct:     2 RHTLAVLVENNPGVLARVAGLFSRRGYNIDSLAVGRTENPDISRMTIVVEGDDRVLEQVV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL KLV+VIKV+DI++E +V REL+L+K++ D++T  EIM +V+IFRA++VDI    LT
Sbjct:    62 KQLRKLVDVIKVQDITSEQYVSRELLLLKVHADSNTRGEIMQIVEIFRARIVDIGPKTLT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE TGD  K+ A++  L  FGIKEL RTGKIAL R
Sbjct:   122 IEATGDEDKIEAIENALRPFGIKELVRTGKIALLR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P65161 ilvH "Putative acetolactate synthase small subunit" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/160 (46%), Positives = 111/160 (69%)

Query:    78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQV 135
             K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct:     4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query:   136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
              +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct:    64 TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query:   196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R   G
Sbjct:   124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0832 DET_0832 "acetolactate synthase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/155 (47%), Positives = 106/155 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HTI   V D  G++NR+A +F RRG+NI+S+AVG +        TIVV G   ++ QV 
Sbjct:     5 KHTIVALVEDRPGVLNRMASLFRRRGFNIDSIAVGRSETPGFSRMTIVVDGANTMVEQVR 64

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+K+V+V+KV DI+ +  + REL LIK+    +   EIM +VDIFRAK+VD++  +LT
Sbjct:    65 KQLDKVVDVVKVSDITGQDIICRELALIKVKSTPANRSEIMQIVDIFRAKIVDVASDSLT 124

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             +EVTGD  K+ ++   L  FGIKE+ RTG+IA+ R
Sbjct:   125 VEVTGDEEKVNSLYNLLRAFGIKEITRTGRIAMTR 159

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1910 GSU_1910 "acetolactate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             RHTI+V V +E G+++R+AG+F+ RG+NI+SL+V    D+++   TIV  G +++L Q+ 
Sbjct:     2 RHTITVLVENEFGVLSRVAGLFSGRGFNIDSLSVAPTNDESISRMTIVTRGDDQILEQIT 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QLNKL++VIKV D ++   +ERE+ LIK+  +     E++ +VDIFR+K++D++  + T
Sbjct:    62 KQLNKLIDVIKVIDFTDGEVIEREMALIKVTAEDDARAEVLRIVDIFRSKIIDVTPRSFT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             IE TG P K+ A+   L   G+KEL RTG  A+ R   G
Sbjct:   122 IEATGTPAKIDAILELLRPLGLKELVRTGPAAIGRGAKG 160

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1594 CHY_1594 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 65/155 (41%), Positives = 104/155 (67%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HT+SV V ++ G++ RI+G+ +RR +NIES+  G + +  +   TIVV G + VL QV+
Sbjct:     2 KHTLSVLVLNKPGVLARISGLLSRRMFNIESITAGYSEEPNITRITIVVQGDDLVLEQVI 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
              QL+KL++VIK++++  E  + REL LIK+        +I+ +V+IFRA +VD++   + 
Sbjct:    62 NQLSKLIDVIKIKELPMEETIARELALIKVRALPEKRADIVNIVNIFRANIVDVNRETMV 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE+TGD  K+ A+   L+  GI E+ RTGK+AL R
Sbjct:   122 IELTGDEDKINALCEVLTDHGIVEIVRTGKVALNR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_2579 SPO_2579 "acetolactate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 72/181 (39%), Positives = 108/181 (59%)

Query:    56 GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
             GS+S++A     ++ P  +   +RHTI++ V +E G++ R+ G+F+ RGYNIESL V   
Sbjct:     9 GSSSHSAY----NLRPTFSDVAERHTIALLVENEPGVLARVIGLFSGRGYNIESLTVA-E 63

Query:   116 VDK----ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH-VERELMLIKLNGDT 170
             VD     +  TIV +GT +V+ Q+  QL ++V+V  V D++ E   VEREL ++K+ G  
Sbjct:    64 VDHTGHLSRITIVTTGTPQVIEQIKAQLGRIVSVRDVHDLTVEGRSVERELAMLKVVGSG 123

Query:   171 STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR 230
                 E + L DIFRA VVD +  +   E+TG P K+ A    +   G+ E+ARTG  AL 
Sbjct:   124 DKRVEALRLADIFRANVVDSTLSSFVFEITGAPEKIDAFADLMRPLGLAEIARTGVAALL 183

Query:   231 R 231
             R
Sbjct:   184 R 184

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3237 CPS_3237 "acetolactate synthase III, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 62/164 (37%), Positives = 104/164 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +++ + +E G ++RI G+F++R +NIESL V    D +L   TI   G ++VL Q+V
Sbjct:     2 RRILAILMENEPGSLSRIVGLFSQRAFNIESLTVAPTDDNSLSRMTIATKGDDKVLEQIV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPEIMWLVDIFRAKVVDISEHAL 195
             +Q+NKL++VIK+ DI++  H+EREL+L+K+   +  +  E+  + DIFR  ++DI +   
Sbjct:    62 KQVNKLIDVIKITDITDRKHIERELLLVKVAAMNDKSRTEVTRITDIFRGNIIDIGKQVY 121

Query:   196 TIEVTGDPGKMVAVQRNL-SKFGIKELARTGKIALRREKLGDTA 238
             T+++TGD  K+ A    L ++  I E AR+G + + R   GD A
Sbjct:   122 TVQLTGDAEKLNAFINALQNETEIIESARSGCVGMAR---GDQA 162

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P00894 ilvH "IlvH" [Escherichia coli K-12 (taxid:83333)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 61/158 (38%), Positives = 100/158 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct:     2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct:    62 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 121

Query:   197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
             +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct:   122 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 157

GO:0009097 "isoleucine biosynthetic process" evidence=IEA;IDA

GO:0003984 "acetolactate synthase activity" evidence=IEA;IDA

GO:0009099 "valine biosynthetic process" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFF4	ILVH1_ARATH	No assigned EC number	0.6845	0.8939	0.6540	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	LOW CONFIDENCE prediction!
4th Layer	2.2.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012144001	SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026591001	RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa)	•					•	•		0.972
	GSVIVG00000550001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (476 aa)	•					•	•		0.959
	GSVIVG00018719001	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shot [...] (588 aa)	•					•	•		0.958
	GSVIVG00037861001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa)	•		•			•	•		0.935
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•						•		0.932
	GSVIVG00029877001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa)	•		•			•	•		0.923
	GSVIVG00005682001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa)	•						•		0.912
	GSVIVG00028924001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00028312001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (197 aa)						•			0.899
	GSVIVG00026166001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (89 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	2e-73
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	1e-68
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	5e-59
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	9e-59
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	1e-29
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	3e-29
pfam13710	63	pfam13710, ACT_5, ACT domain	1e-12
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	1e-09
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	9e-09
pfam01842	66	pfam01842, ACT, ACT domain	9e-08
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	2e-07
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	4e-07
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	2e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	4e-05
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	3e-04
PRK06349	426	PRK06349, PRK06349, homoserine dehydrogenase; Prov	0.001
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	0.002
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	0.002
PRK13562	84	PRK13562, PRK13562, acetolactate synthase 1 regula	0.004

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  224 bits (573), Expect = 2e-73
 Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RHT+SV V +E G+++R+AG+F+RRGYNIESL VG   D  L   TIV SG E+V+ Q+ 
Sbjct: 2   RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL++V+KV D++ E HVEREL L+K+        EI+ L DIFRAK+VD++  +LT
Sbjct: 62  KQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IEVTGD  K+ A    L  +GIKE+ RTG +A+ R
Sbjct: 122 IEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGR 156

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  212 bits (541), Expect = 1e-68
 Identities = 96/157 (61%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQV 135
            +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+
Sbjct: 1   MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQL 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QL KLVN++KV+DI+N P VERELMLIK+N ++ T PEI+ +  IFRAKVVD+SE +L
Sbjct: 61  TKQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +EVTGDPGK+VA+++ L KFGI E+ARTGKIAL RE
Sbjct: 121 ILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRE 157

Length = 174

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  187 bits (476), Expect = 5e-59
 Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH +SV V +E G+++R+AG+F RRG+NIESL VG   D  L   TIVV G ++VL Q+ 
Sbjct: 1   RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKLV+VIKV D++    VEREL L+K++       EI+ L +IFR ++VD+S  + T
Sbjct: 61  KQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           +EVTGD  K+ A    L  FGIKE+ARTGK AL R 
Sbjct: 121 VEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRG 156

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  186 bits (475), Expect = 9e-59
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
             R  +S+ V +E G+++R+ G+F+RRGYNIESL VG      L   TIVVSG E+VL Q
Sbjct: 2   PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQ 61

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           +++QLNKL++V+KV D+++EPHVEREL LIK++ + S   EI  + +IFRA VVD+S  +
Sbjct: 62  IIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPES 121

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           LTIE+TGD  K+ A  R L  +GI E+ARTG +A+ R 
Sbjct: 122 LTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRG 159

Length = 163

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  108 bits (272), Expect = 1e-29
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217
           EREL L+K+     T  EI+ + DIFRAK+VD++  + TIE+TGDP K+ A    L  FG
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 218 IKELARTGKIALRRE 232
           I E+ RTG +A+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  107 bits (269), Expect = 3e-29
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVE 137
           HT+SV V +E G++NRI+G+FARRG+NIESL VG   +   +  TIVV G + V+ Q+V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 138 QLNKLVNVIKVE 149
           QLNKLV+V+KV 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G++ RI  V  RRG+NI SL +    D  +   T+ V G ER +  +V QL KL++V
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 146 IKV 148
           ++V
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 18/32 (56%), Positives = 27/32 (84%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           HTLS+LV N PGVLN ++G+ +RRG+NI+ ++
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLT 32

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score = 53.5 bits (130), Expect = 9e-09
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           HTLS+LV N PGVL+ V G+ SRRGYNI+ ++
Sbjct: 3   HTLSVLVENEPGVLSRVAGLFSRRGYNIESLT 34

Length = 161

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138
             + V V D  G++  + G  A RG NIES++   + DKA +  IVV   E  L   +E 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

Query: 139 LNKLVN 144
           L KL+ 
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNI 342
               LS+LV N PGVL+ VTG+ SRRGYNI
Sbjct: 3   MRRILSLLVENEPGVLSRVTGLFSRRGYNI 32

Length = 163

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVE 137
           HT S+ + ++  ++ RI+G+FARRGY I SL +        +   +    TE     +V 
Sbjct: 3   HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62

Query: 138 QLNKLVNVIKVEDI 151
           QL KL+NV++V  +
Sbjct: 63  QLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           H LS+LV N PGVL+ V G+ +RRG+NI+ ++
Sbjct: 2   HILSVLVENEPGVLSRVAGLFTRRGFNIESLT 33

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVEQL 139
           ++V   D  G++ ++  V A  G NI S+      +  +A   IVV G    L +++E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           HTLS+LV +  GVL  + G+ +RRG+NI+ ++
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLA 34

Length = 174

>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV---SGTERVLRQV 135
           ++ + + V D+ G++ +IA +FA  G +IES+ +          IV+     +E  LR  
Sbjct: 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESI-LQKGAGGEGAEIVIVTHETSEAALRAA 406

Query: 136 VEQLNKL------VNVIKVE 149
           +  +  L       +VI+VE
Sbjct: 407 LAAIEALDVVLGIPSVIRVE 426

Length = 426

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348
           SHT S++++N P VL  ++G+ +RRGY I  ++ N
Sbjct: 2   SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36

Length = 76

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 86  VGDESGIINRIAGVFARRGYNIES---LAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142
           V +  G+++ + G+FARR +N+E    L +  + DK+   ++V+  +R L Q++ Q+ KL
Sbjct: 15  VRNHPGVMSHVCGLFARRAFNVEGILCLPIQ-DGDKSRIWLLVNDDQR-LEQMISQIEKL 72

Query: 143 VNVIKVEDISNEPHV 157
            +V+KV    ++P +
Sbjct: 73  EDVLKVRRNQSDPTM 87

Length = 96

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---ALFTIVVSGTERVLRQVVE 137
            + +   D  G++  I  V +    NI S+      +       T+ V   E  L +++ 
Sbjct: 6   DLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKDLEH-LARLIR 64

Query: 138 QLNKLVNVIKVE 149
           +L K+  VI VE
Sbjct: 65  KLRKIPGVISVE 76

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G+I ++  +    G NI ++ VG       A   + V     V  +V+E+L  L  +
Sbjct: 8   DVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGI 65

Query: 146 IKVEDI 151
           I+V  I
Sbjct: 66  IRVRLI 71

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|184144 PRK13562, PRK13562, acetolactate synthase 1 regulatory subunit; Provisional

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQV 135
              + + V D+   +NRI   F R  YNI++L V  +    +  + +      +  L  +
Sbjct: 2   TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHIL 61

Query: 136 VEQLNKLVNVIKV--EDIS 152
           +++L + +NV+ V   D+ 
Sbjct: 62  IKKLKQQINVLTVECYDLV 80

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.96
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.95
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.95
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.94
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.93
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.83
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.59
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.58
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.52
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.48
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	99.29
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	99.01
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.85
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	98.83
COG4747	142	ACT domain-containing protein [General function pr	98.82
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.75
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.69
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.59
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.58
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.5
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.47
PRK06349	426	homoserine dehydrogenase; Provisional	98.46
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.42
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.36
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.35
PRK08577	136	hypothetical protein; Provisional	98.33
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.28
PRK00194	90	hypothetical protein; Validated	98.27
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	98.22
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.2
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	98.15
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	98.08
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	98.04
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.99
PRK04435	147	hypothetical protein; Provisional	97.98
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.91
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.89
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.88
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.88
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.86
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.82
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.75
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.75
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.71
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.7
cd02116	60	ACT ACT domains are commonly involved in specifica	97.67
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.67
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	97.66
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.63
COG4492	150	PheB ACT domain-containing protein [General functi	97.63
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.55
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.52
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.48
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.43
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.36
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.34
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.3
COG1707	218	ACT domain-containing protein [General function pr	97.17
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.16
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.11
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.05
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.05
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	97.0
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.96
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.93
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.82
PRK11589	190	gcvR glycine cleavage system transcriptional repre	96.8
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.78
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.77
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	96.7
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.62
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	96.58
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.5
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	96.45
PRK06635	404	aspartate kinase; Reviewed	96.37
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.31
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.21
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.15
PRK06349	426	homoserine dehydrogenase; Provisional	96.15
PRK07334	403	threonine dehydratase; Provisional	96.11
PRK11899	279	prephenate dehydratase; Provisional	96.09
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	96.07
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.06
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	96.02
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	96.02
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.99
PRK06545	359	prephenate dehydrogenase; Validated	95.96
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	95.95
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	95.89
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	95.86
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	95.84
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	95.78
PRK00194	90	hypothetical protein; Validated	95.71
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	95.69
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.66
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	95.65
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.63
PRK06382	406	threonine dehydratase; Provisional	95.6
COG2061	170	ACT-domain-containing protein, predicted allosteri	95.57
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	95.45
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.43
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.37
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	95.36
PRK12483	521	threonine dehydratase; Reviewed	95.29
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	95.22
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	95.17
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.17
PRK11898	283	prephenate dehydratase; Provisional	95.09
PRK08198	404	threonine dehydratase; Provisional	95.09
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	95.08
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.0
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	94.81
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.8
cd02116	60	ACT ACT domains are commonly involved in specifica	94.75
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	94.75
PRK08818	370	prephenate dehydrogenase; Provisional	94.64
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	94.48
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	94.38
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	94.36
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	94.35
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	94.29
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	94.15
PRK03059	856	PII uridylyl-transferase; Provisional	94.15
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.07
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	94.06
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	94.06
PRK08577	136	hypothetical protein; Provisional	94.02
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	93.96
PRK08210	403	aspartate kinase I; Reviewed	93.88
PRK05092	931	PII uridylyl-transferase; Provisional	93.85
COG4747	142	ACT domain-containing protein [General function pr	93.83
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	93.82
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	93.72
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	93.52
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	93.5
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	93.32
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	93.25
COG3830	90	ACT domain-containing protein [Signal transduction	93.23
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	93.17
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	93.12
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	93.05
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	93.05
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	93.05
PRK03381	774	PII uridylyl-transferase; Provisional	93.04
PRK07431	587	aspartate kinase; Provisional	92.85
PLN02550	591	threonine dehydratase	92.76
PLN02317	382	arogenate dehydratase	92.74
PRK07431	587	aspartate kinase; Provisional	92.7
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	92.67
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	92.61
COG2150	167	Predicted regulator of amino acid metabolism, cont	92.56
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	92.42
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.81
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	91.64
PRK09034	454	aspartate kinase; Reviewed	91.6
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	91.33
PRK04435	147	hypothetical protein; Provisional	91.29
PRK00275	895	glnD PII uridylyl-transferase; Provisional	91.25
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	90.99
PRK03381	774	PII uridylyl-transferase; Provisional	90.94
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	90.93
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	90.88
PRK05092	931	PII uridylyl-transferase; Provisional	90.86
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	90.82
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	90.7
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	90.64
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	90.55
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	90.4
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	90.32
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	90.2
PRK05007	884	PII uridylyl-transferase; Provisional	90.04
PRK15385	225	magnesium transport protein MgtC; Provisional	90.01
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.78
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	89.44
PRK04374	869	PII uridylyl-transferase; Provisional	89.17
PRK08818	370	prephenate dehydrogenase; Provisional	88.98
PRK01759	854	glnD PII uridylyl-transferase; Provisional	88.94
PRK09224	504	threonine dehydratase; Reviewed	88.89
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	88.89
PRK05007	884	PII uridylyl-transferase; Provisional	88.83
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	88.79
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	88.72
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	88.6
PRK14434	92	acylphosphatase; Provisional	88.48
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	88.44
PRK00275	895	glnD PII uridylyl-transferase; Provisional	88.27
PRK09084	448	aspartate kinase III; Validated	88.23
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	88.04
PRK06291	465	aspartate kinase; Provisional	87.91
PRK03059	856	PII uridylyl-transferase; Provisional	87.79
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	87.65
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	87.15
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	87.12
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	86.88
PRK14426	92	acylphosphatase; Provisional	86.6
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	86.16
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	86.12
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	86.02
PLN02551	521	aspartokinase	85.67
PRK08526	403	threonine dehydratase; Provisional	85.35
PRK01759	854	glnD PII uridylyl-transferase; Provisional	85.21
PRK06545	359	prephenate dehydrogenase; Validated	85.05
PRK04374	869	PII uridylyl-transferase; Provisional	84.99
PRK14429	90	acylphosphatase; Provisional	84.75
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	84.74
PRK08639	420	threonine dehydratase; Validated	83.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	83.77
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	83.63
PRK09977	215	putative Mg(2+) transport ATPase; Provisional	83.36
PRK11899	279	prephenate dehydratase; Provisional	83.19
PRK14420	91	acylphosphatase; Provisional	83.07
PRK09181	475	aspartate kinase; Validated	82.98
PF00708	91	Acylphosphatase: Acylphosphatase; InterPro: IPR001	82.81
PF10741	110	T2SM_b: Type II secretion system (T2SS), protein M	82.66
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.82
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	81.7
PRK14422	93	acylphosphatase; Provisional	81.29
PRK14445	91	acylphosphatase; Provisional	81.24
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	81.16
PRK14436	91	acylphosphatase; Provisional	81.09
TIGR02079	409	THD1 threonine dehydratase. This model represents	80.77
PRK14428	97	acylphosphatase; Provisional	80.46
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	80.36
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	80.06
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	80.03

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=7e-53  Score=373.60  Aligned_cols=157  Identities=52%  Similarity=0.827  Sum_probs=153.0

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||+++++++.++||+|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            5899999999999999999999999999999999999997774  99999999999999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (349)
Q Consensus       156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~  234 (349)
                      .|+|||+||||++++++|.||++++++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999963

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=2.2e-52  Score=369.00  Aligned_cols=155  Identities=52%  Similarity=0.801  Sum_probs=151.2

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~  156 (349)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||+|+++++.++||.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            589999999999999999999999999999999999997774  999999999999999999999999999999999999


Q ss_pred             hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 018896          157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (349)
Q Consensus       157 V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~  233 (349)
                      |+||||||||++++++|.||++++++|||||||++++++++|+||+++|||+|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=1.4e-52  Score=375.71  Aligned_cols=166  Identities=58%  Similarity=0.878  Sum_probs=158.1

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||++.++++.++||.+||+||+||++|+++++++
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            5899999999999999999999999999999999999999885  99999998888999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 018896          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG  235 (349)
Q Consensus       156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~~  235 (349)
                      +|+||||||||++++++|.||++++++|||||||+++++++||+||+++|||+|+++|+||||+|++|||++||.|+...
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcccccc
Q 018896          236 DTAPFWNF  243 (349)
Q Consensus       236 ~~~~~~~~  243 (349)
                      ...++.++
T Consensus       161 ~~~~l~~~  168 (174)
T CHL00100        161 NTEYLRYI  168 (174)
T ss_pred             hHHHHHhh
Confidence            65544433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-51  Score=366.09  Aligned_cols=159  Identities=50%  Similarity=0.776  Sum_probs=155.2

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      +|+|++|++++|+||+|+||+|+|+||||||+||+|++||+++  +|||++.||+..++||+|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            6899999999999999999999999999999999999999997  49999999989999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (349)
Q Consensus       155 ~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~  234 (349)
                      ++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+.
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~  161 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK  161 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence            99999999999999988899999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q 018896          235 G  235 (349)
Q Consensus       235 ~  235 (349)
                      .
T Consensus       162 ~  162 (163)
T COG0440         162 K  162 (163)
T ss_pred             C
Confidence            3

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-49  Score=373.13  Aligned_cols=215  Identities=50%  Similarity=0.736  Sum_probs=200.8

Q ss_pred             ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ..+.++|+|++||+|+||+|+||+|+|++||||||||.|+.+|++.+  ||||+.|.|+.++|.++||+||++|++|.||
T Consensus        72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy  151 (309)
T KOG2663|consen   72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY  151 (309)
T ss_pred             cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence            46899999999999999999999999999999999999999999985  8999999999999999999999999999999


Q ss_pred             CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 018896          152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR  231 (349)
Q Consensus       152 t~~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~R  231 (349)
                      +.++.|+|||||+||+         ++..+.|+|  ||..++++++|+|||++   ++...|++|+|.|++|||. |+.|
T Consensus       152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr  216 (309)
T KOG2663|consen  152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR  216 (309)
T ss_pred             CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence            9999999999999998         999999999  99999999999999999   7889999999999999999 8999


Q ss_pred             CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCc
Q 018896          232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG  311 (349)
Q Consensus       232 g~~~~~~~~~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~~~~~~~~~~~~vl~~~~~~~~~~~~~~  311 (349)
                      .+++.++++|+|+++.||++.+..+...++...            +.+|||||++++.++-         | +++++..+
T Consensus       217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp~---------g-vle~~rSG  274 (309)
T KOG2663|consen  217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDPK---------G-VLEEDRSG  274 (309)
T ss_pred             HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCcc---------c-chhhcccc
Confidence            999999999999999999998877777755433            5679999999974442         2 66899999


Q ss_pred             cceeEEEEEEeCCC
Q 018896          312 LRSHTLSMLVNNTP  325 (349)
Q Consensus       312 ~~~~~ls~~V~n~~  325 (349)
                      .+.|+++.+|+|.|
T Consensus       275 l~a~trspl~n~v~  288 (309)
T KOG2663|consen  275 LRAHTRSPLVNSVP  288 (309)
T ss_pred             hhhcccccccccCh
Confidence            99999999999998

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.96  E-value=5.9e-29  Score=205.47  Aligned_cols=86  Identities=23%  Similarity=0.443  Sum_probs=81.5

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN  153 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~  153 (349)
                      .+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++  +|||++. ++..++||+|||+||+||++|.++++
T Consensus         5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~   83 (96)
T PRK08178          5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS   83 (96)
T ss_pred             CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence            47789999999999999999999999999999999999999998  4999998 57899999999999999999999999


Q ss_pred             chhhhhhee
Q 018896          154 EPHVERELM  162 (349)
Q Consensus       154 ~~~V~RELa  162 (349)
                      ++.|++|+.
T Consensus        84 ~~~v~~e~~   92 (96)
T PRK08178         84 DPTMFNKIA   92 (96)
T ss_pred             chhHHHHHH
Confidence            999999974

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.95  E-value=1.4e-28  Score=198.96  Aligned_cols=78  Identities=27%  Similarity=0.485  Sum_probs=73.9

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEEE--ecC
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS  152 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV~--dlt  152 (349)
                      |+|+||++|+|+||+|+||+++|+||||||+||+||+|+++++  |||+++ +|++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            5899999999999999999999999999999999999999984  999998 99999999999999999999999  777


Q ss_pred             Cch
Q 018896          153 NEP  155 (349)
Q Consensus       153 ~~~  155 (349)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            653

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.95  E-value=1.9e-27  Score=188.82  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=71.2

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      |+|+|+++|+|+||+|+||+++|+||||||+||++|++++++.  |||++.++++.++||+|||+||+||++|+++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            5899999999999999999999999999999999999999984  9999999999999999999999999999985

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.94  E-value=8.6e-27  Score=183.16  Aligned_cols=75  Identities=47%  Similarity=0.753  Sum_probs=70.8

Q ss_pred             hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896          158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (349)
Q Consensus       158 ~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg  232 (349)
                      +||||||||++++++|.+|++|++.|+|+|||+++++++||+||+++|||+|++.|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            599999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=179.97  Aligned_cols=73  Identities=27%  Similarity=0.439  Sum_probs=69.3

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~d  150 (349)
                      ||+|+|+++|+|+||+|+||+|+|+||||||+||++++|++++.  |||+|. +++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence            78999999999999999999999999999999999999999974  888885 89999999999999999999985

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.83  E-value=1e-20  Score=144.03  Aligned_cols=61  Identities=56%  Similarity=0.950  Sum_probs=56.1

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV  148 (349)
                      |+||+|+||+++|+||||||+||+++++++++.  |||+++++++.++||++||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999985  9999999999999999999999999987

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.59  E-value=8.5e-16  Score=127.47  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=37.3

Q ss_pred             CCccceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      +....+|+||++|+|+||||+||+|||+|||||||||+||
T Consensus         3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg   42 (96)
T PRK08178          3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL   42 (96)
T ss_pred             CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence            4456789999999999999999999999999999999997

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.58  E-value=8.9e-16  Score=124.68  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=34.8

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      ++|+||++|+|+||||+||+|||+||||||+||+||
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg   36 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT   36 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEec
Confidence            479999999999999999999999999999999997

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.52  E-value=5.8e-15  Score=117.58  Aligned_cols=36  Identities=42%  Similarity=0.763  Sum_probs=34.8

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      ++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg   36 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN   36 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence            479999999999999999999999999999999997

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.48  E-value=2.1e-14  Score=114.31  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=34.9

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      ++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus         2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~   37 (76)
T PRK11152          2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT   37 (76)
T ss_pred             ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence            589999999999999999999999999999999997

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=99.29  E-value=1.1e-12  Score=125.28  Aligned_cols=40  Identities=38%  Similarity=0.733  Sum_probs=38.3

Q ss_pred             CccceeEEEEEEeCCCchhhhhhhhhcccccccceeeecC
Q 018896          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNNL  349 (349)
Q Consensus       310 ~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~~  349 (349)
                      +..++|+|+++|+|+|||||||+|+||+||||||||.|++
T Consensus        73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             ccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            5779999999999999999999999999999999999986

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=99.01  E-value=8e-10  Score=89.85  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=69.4

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN  153 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~  153 (349)
                      ||+|++.+.+..+||.|.||.++-++|||-+.++++...-|.+.  +.++|+ +++.++.|..||+||.||..|+..-.
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~-s~R~~~lL~~QLeKl~Dv~~V~i~~~   78 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD-SDRSVDLLTSQLEKLYDVAHVEITQS   78 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc-CCCChHHHHHHHHHHccceeEEEeeh
Confidence            89999999999999999999999999999999999999888776  788887 66779999999999999999986543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.85  E-value=1.3e-08  Score=73.84  Aligned_cols=64  Identities=28%  Similarity=0.463  Sum_probs=55.1

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEEeCChHHHHHHHHHHhcCe
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNKLV  143 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV~gdd~~veQLiKQL~KLi  143 (349)
                      |+|.+.+.|+||+|.+|+.+|+++|+||.++......+.. .+.++...+....+++.+.|+++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   65 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP   65 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence            6899999999999999999999999999999999988843 455555567788999999998875

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=98.83  E-value=1.4e-09  Score=83.05  Aligned_cols=26  Identities=58%  Similarity=0.974  Sum_probs=24.3

Q ss_pred             CCCchhhhhhhhhcccccccceeeec
Q 018896          323 NTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       323 n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      |+||+|+||+|||+||||||+||+|+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~   26 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVG   26 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEee
Confidence            89999999999999999999999986

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.82  E-value=1.5e-08  Score=88.40  Aligned_cols=122  Identities=20%  Similarity=0.274  Sum_probs=85.0

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHH---HhcCeeeeEEEecCC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ---LNKLVNVIKVEDISN  153 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQ---L~KLiDVikV~dlt~  153 (349)
                      |+-.+||+|+|||||-|..++..+...|+||..++.+.|.++|+++++|+.++.. .+..+.   .-++-||+.|+-=  
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~Lee~gF~Vr~~dVlaVEme--   77 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSVLEEAGFTVRETDVLAVEME--   77 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHHHHHCCcEEEeeeEEEEEec--
Confidence            6778999999999999999999999999999999999999999999999866653 344332   3455566555521  


Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcEE
Q 018896          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIKE  220 (349)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG--------~~~KIdafi~~L~~fGIlE  220 (349)
                                    -.|..-   ..|++.++..  |++-+|+.-=++-        ..+.+|..++.|+.-||.-
T Consensus        78 --------------D~PG~l---~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~  133 (142)
T COG4747          78 --------------DVPGGL---SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKL  133 (142)
T ss_pred             --------------CCCCcH---HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCee
Confidence                          123333   3444444332  2333333222221        3467899999999999863

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.75  E-value=9.2e-08  Score=69.29  Aligned_cols=69  Identities=59%  Similarity=0.947  Sum_probs=58.1

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV  148 (349)
                      |+|.+.+.|+||+|.+|+.+|++.|+||.++........+  .+.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            7899999999999999999999999999999987642233  46666653337899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.69  E-value=8.6e-08  Score=71.90  Aligned_cols=47  Identities=21%  Similarity=0.506  Sum_probs=42.2

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS  126 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~  126 (349)
                      +.|+|.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.++
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~   48 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVS   48 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEEC
Confidence            57899999999999999999999999999999988877766777774

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.59  E-value=2.1e-07  Score=67.07  Aligned_cols=68  Identities=26%  Similarity=0.465  Sum_probs=58.1

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      |.+.+.|+||+|++|+.+|+.+|+||.++.+...+  +...+++.++..  ..++++++|.++.+|.+|..+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            67899999999999999999999999999998765  334577777543  588999999999999999864

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.58  E-value=6.3e-07  Score=69.09  Aligned_cols=73  Identities=27%  Similarity=0.398  Sum_probs=57.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~-gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      .-.-.|.|.+.|+||+|+.|+.++++.|.||.++.+....+.  ..+++.+. .+-+.+++|++.|+++-+|.+|+
T Consensus         4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            345689999999999999999999999999999999987533  33444433 47788999999999999999996

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.50  E-value=6.3e-07  Score=65.98  Aligned_cols=70  Identities=26%  Similarity=0.366  Sum_probs=58.2

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      |.|.+.+.|+||+|++|+.+|++.|+||+++......+  ...+.+++. .+...++.++++|+++.+|.++.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~   73 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP   73 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence            57899999999999999999999999999998765543  234666654 57788999999999998887653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.47  E-value=6.5e-07  Score=64.83  Aligned_cols=69  Identities=30%  Similarity=0.425  Sum_probs=58.0

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      +|.+.+.|+||+|.+|+.+|++.|+||.++.+....  +.+.+.|.+++.  .+++++++|+++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            478899999999999999999999999999987643  334566777654  688999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.46  E-value=5.2e-07  Score=90.46  Aligned_cols=75  Identities=25%  Similarity=0.379  Sum_probs=65.6

Q ss_pred             ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV  148 (349)
                      .+.+.+|.|++.++|+||+|.+|+++|+++|+||+|+...+.++ ...+.|+++ .++..++++++||+||.+|.+.
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            44567899999999999999999999999999999999887654 245888887 7889999999999999998664

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.42  E-value=3.6e-07  Score=67.49  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=57.0

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      |-+..+|+||+|++|+.++++.|+||.++....+.+.+.+.+.++..  .+++++++|.++.+|++|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876554445567666644  788999999999999999764

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.36  E-value=3.3e-06  Score=63.41  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=57.0

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .|.+.+.|+||.|.+|+..+++.|.||..++..... ....  +++.+.+.+..+++|+++|.++-+|.+|+.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            578999999999999999999999999999874322 2223  4444454455899999999999999999854

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.35  E-value=4e-06  Score=61.00  Aligned_cols=69  Identities=28%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d  150 (349)
                      .|.+.+.|+||+|++|+.+|++.++||.++...... +...+++.+++. +.++.++++|++.-+|..|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            478899999999999999999999999999876543 334577777765 678899999999999999874

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=98.33  E-value=5.3e-06  Score=71.07  Aligned_cols=76  Identities=26%  Similarity=0.323  Sum_probs=62.4

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEe--CChHHHHHHHHHHhcCeeeeEEEec
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~--gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ....+.|.+.+.|+||+|+.|+.+|+..++||.++.+......+  .+.+++.  ..+..+++++++|.++-+|..|...
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            34578999999999999999999999999999999987655333  4555444  3346799999999999999999854

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.28  E-value=2.5e-06  Score=61.63  Aligned_cols=49  Identities=24%  Similarity=0.541  Sum_probs=41.9

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeCChH
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTER  130 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~gdd~  130 (349)
                      |++.+.|+||.|.||+.+|+++|+||+++.+.+++ +.+++.+.++..++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~   50 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPER   50 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHH
Confidence            46899999999999999999999999999999887 55568888875333

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK00194 hypothetical protein; Validated

Probab=98.27  E-value=1.4e-06  Score=68.68  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=56.6

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~  149 (349)
                      |+++.|++.-.|+||++++|+++|+++|+||..+......+.-.++++++.+.  ...+.+.+.|.++.+...++
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            56899999999999999999999999999999998776433333666666443  33677777777777666655

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=98.22  E-value=9.9e-06  Score=62.13  Aligned_cols=70  Identities=9%  Similarity=0.268  Sum_probs=58.5

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      .|.|...|++|+|+.|+.+++..|+||.++.+... +.-.+++.+. +-..+++++++|.++..|.+|+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998653 2212555554 6677999999999999999998653

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.20  E-value=4.8e-06  Score=61.78  Aligned_cols=69  Identities=22%  Similarity=0.411  Sum_probs=55.2

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      +-+...|+||.|++|+.+|+++|+||.++.+.+....+  .+.+.++++.  ...+.+.|.++.+|..|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence            45689999999999999999999999999987764333  4666676532  457888899999999888764

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=98.15  E-value=2.3e-05  Score=54.34  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      |.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.++++|.++..|.+|+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 2234555554 45677999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=98.08  E-value=4.4e-05  Score=57.31  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~-gdd~~veQLiKQL~KLiDVikV  148 (349)
                      +|.+.+.|+||.|++|+.++++.|.||.++......+. ..+.+++. .+.+.++++++.|+++.+|.--
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~   70 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL   70 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence            47899999999999999999999999999998664422 23555555 4778899999999999998753

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=98.04  E-value=2.6e-05  Score=58.13  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      +.+++.+.|+||.|.+++++|++.|+||.++......  ..+.+.++++.++ ..+++.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence            6899999999999999999999999999999877753  2556777787433 56677666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.99  E-value=5.9e-05  Score=58.53  Aligned_cols=65  Identities=23%  Similarity=0.395  Sum_probs=51.4

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cE--EEEEEeCC--hHHHHHHHHHHhcCee
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT--ERVLRQVVEQLNKLVN  144 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-gi--iTIVV~gd--d~~veQLiKQL~KLiD  144 (349)
                      ..|.+.+.|+||.|.+|+.+|+++|+||.++..-+..+. ..  +.+-+++.  +..++++++.|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            367788899999999999999999999999998887653 33  44445554  6778888898887443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK04435 hypothetical protein; Provisional

Probab=97.98  E-value=5.1e-05  Score=66.64  Aligned_cols=77  Identities=32%  Similarity=0.421  Sum_probs=61.8

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEE--eCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV--~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      .-+.-+|.+.+.|+||+|++|+.++++.|.||.+++..... +...+++++  .+.+..+++|+.+|+++-.|.+|+-+.
T Consensus        66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            34567999999999999999999999999999999875332 223355554  444558999999999999999998764

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.91  E-value=6.4e-05  Score=56.98  Aligned_cols=63  Identities=11%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-C--CcE--EEEEEeCChHHHHHHHHHHhcCeee
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-D--KAL--FTIVVSGTERVLRQVVEQLNKLVNV  145 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d--~gi--iTIVV~gdd~~veQLiKQL~KLiDV  145 (349)
                      +++.+.|+||.|.+++.++++.|.||.++...+.. +  ...  +++.+.. +..++.|++.|++-..|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccE
Confidence            78999999999999999999999999999887752 2  233  4444433 33478888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.89  E-value=5.4e-05  Score=56.43  Aligned_cols=59  Identities=31%  Similarity=0.462  Sum_probs=45.2

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL~K  141 (349)
                      .+++.+.|+||.|.+++.+|+++|+||+++...+....+  .+.|.+++++.  +++++.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHH
Confidence            688999999999999999999999999999887764444  36666664332  355555544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.88  E-value=9.4e-05  Score=56.47  Aligned_cols=63  Identities=17%  Similarity=0.349  Sum_probs=51.1

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcE--EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVN  144 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~gi--iTIVV~g--dd~~veQLiKQL~KLiD  144 (349)
                      +.+.+.|+||.|.+|...|+++|+||.++.--|... .+.  +-|-+.+  ++..++++++.|.+..+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~   69 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE   69 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            567779999999999999999999999997777665 343  4555666  57889999999988654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.88  E-value=4.9e-05  Score=58.18  Aligned_cols=61  Identities=25%  Similarity=0.359  Sum_probs=46.8

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC----CcE--EEEEEeCCh-HHHHHHHHHHhcC
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL  142 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted----~gi--iTIVV~gdd-~~veQLiKQL~KL  142 (349)
                      |++...|+||.+++|+.+|+++|.||..+.....+.    .++  +++.++.++ ..+.++.+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            789999999999999999999999999999865542    244  566666443 3467777766544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.86  E-value=2.1e-05  Score=62.21  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=54.5

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEE
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~  149 (349)
                      ++.|++...|+||++++|++.|+++|.||..+......+.-.++++++.+.  ..++++.+.|++|-+-..++
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~   73 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK   73 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            478999999999999999999999999999998776322212666776543  45888888887776554444

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.82  E-value=9.3e-05  Score=53.60  Aligned_cols=61  Identities=15%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC---Cc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KA--LFTIVVSG-TERVLRQVVEQLNKL  142 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted---~g--iiTIVV~g-dd~~veQLiKQL~KL  142 (349)
                      +.|.+.|+||.|.+|+.+++..|.||.++...+...   .+  .+.+.+.. +...++++++.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            357889999999999999999999999999876532   33  35555443 446788999888764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.75  E-value=8.5e-05  Score=53.88  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeC
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG  127 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~g  127 (349)
                      |.+.+.|+||.|.+++++|++.|+||.++...+....+  .+.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            68899999999999999999999999999876655333  46666664

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.75  E-value=0.00019  Score=55.78  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=53.0

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcC
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KL  142 (349)
                      ...|+++-.|+||++++|++.+++.|.||..+......+.-.+.+.++.++...+++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            4579999999999999999999999999999999987765457777887788899999988776

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.71  E-value=2.6e-05  Score=58.49  Aligned_cols=32  Identities=41%  Similarity=0.646  Sum_probs=29.9

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|++.|.|+||+|++|+.+|+++|+||+++.+
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~   34 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSI   34 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEE
Confidence            47889999999999999999999999999875

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.70  E-value=0.00028  Score=51.60  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd  129 (349)
                      .|.|.+.|+||+|.+|+++|+..|+||.++.+...++.....+.+.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            5789999999999999999999999999999887766444566665433

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.67  E-value=0.00028  Score=46.11  Aligned_cols=57  Identities=30%  Similarity=0.425  Sum_probs=44.8

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHH
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL  139 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd~~veQLiKQL  139 (349)
                      |++...|+||.+.+|++.|+++|+||.++........+  .+++.+...+ ..+.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46888999999999999999999999999987765343  3666676443 566776665

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.67  E-value=0.00012  Score=56.35  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=46.9

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH-HHHHHHHHHhcCe
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLV  143 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~-~veQLiKQL~KLi  143 (349)
                      +++.-.|+||.+++|+++|+.+|+||..++.....+.=.+.+.++.++. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999999999999975554432225556665443 5777777776654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=97.66  E-value=4.3e-05  Score=55.32  Aligned_cols=33  Identities=33%  Similarity=0.588  Sum_probs=30.9

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |+|.+.+.|+||+|++|+++|+.+|+||.++..
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~   33 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQ   33 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence            678999999999999999999999999998864

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.63  E-value=0.00016  Score=55.17  Aligned_cols=62  Identities=15%  Similarity=0.193  Sum_probs=47.2

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHhcC
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL  142 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~KL  142 (349)
                      +|++...|+||++++|++.|+.+|+||..+........+.  +.+.++.+.  ..++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999998875334444  555555443  2477777776654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.63  E-value=0.00035  Score=62.23  Aligned_cols=77  Identities=27%  Similarity=0.362  Sum_probs=65.2

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee-ecCCCcEEEEEE--eCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg-~Ted~giiTIVV--~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      +-+..+|++.++++.|.|+++....++++.||-++... |-++..-+||.+  ++-+..++.|+..|+|+..|.+|+-+.
T Consensus        69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg  148 (150)
T COG4492          69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG  148 (150)
T ss_pred             cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence            34678999999999999999999999999999999877 444444466655  467888999999999999999998654

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.55  E-value=0.00067  Score=50.26  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC------ChHHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g------dd~~veQLiKQL~K  141 (349)
                      .|.|...|+||+|.+|+++|+..|+||.++.+....+....++.+..      +++..++|.+.|.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            57899999999999999999999999999998766554344555432      23455556666644

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.52  E-value=0.00065  Score=52.24  Aligned_cols=46  Identities=17%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS  126 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~  126 (349)
                      .|.|.+.|+||+|.+|+++|++.|+||.+..+...++....++.|.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~   48 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT   48 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence            6889999999999999999999999999999876544333555553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.48  E-value=0.0011  Score=61.05  Aligned_cols=116  Identities=16%  Similarity=0.245  Sum_probs=78.3

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeee----eEEEec
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNV----IKVEDI  151 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDV----ikV~dl  151 (349)
                      +++...|+++-.||||++++|++++++.|.||...+...-.++--+.+.|++....+.++...|.++..-    +.+...
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~   84 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT   84 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence            4477899999999999999999999999999999998877765446666788777788888877666532    223333


Q ss_pred             CCchhhhhhee-eEEEeCCCCCHH----HHHHHHHhcCcEEEEecCC
Q 018896          152 SNEPHVERELM-LIKLNGDTSTWP----EIMWLVDIFRAKVVDISEH  193 (349)
Q Consensus       152 t~~~~V~RELa-LIKV~~~~~~R~----EI~~la~iFrAkIVDvs~~  193 (349)
                      ....  .++.. .+.|.+....|+    +|-+....++..|.|.+.+
T Consensus        85 ~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         85 TARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             cccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence            2211  22222 255554443444    4455555667777666443

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.43  E-value=0.00073  Score=52.33  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe----C----ChHHHHHHHHHHhcC
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL  142 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~----g----dd~~veQLiKQL~KL  142 (349)
                      .|+|+..|+||.|.+|++.|++.|.||.+..+....+.-.-++.|.    +    +++..++|.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999985533223344442    1    245567777777653

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.36  E-value=0.0016  Score=49.96  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=44.6

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe---C----ChHHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G----TERVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~---g----dd~~veQLiKQL~K  141 (349)
                      .|.|...|+||.|.+|+++|++.|+||.+..+..+.+.-. =++.|.   +    +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999877744322 233332   1    34456666666654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.34  E-value=0.0016  Score=50.47  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=51.6

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEeCChHHHHHHHHHHhcCee
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVN  144 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~gdd~~veQLiKQL~KLiD  144 (349)
                      .|.+.+.|+||.|.+|...|+.+|+|+..|.--|..... .  +=|-+++.+..+++++++|.+...
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~   68 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVA   68 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcC
Confidence            356667899999999999999999999999988877553 2  445566777778999999887654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.30  E-value=0.00086  Score=52.29  Aligned_cols=62  Identities=21%  Similarity=0.301  Sum_probs=46.5

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      ..|++.-.|+||++++|+++++.+|.||..+......+.-.|.+.++.+....++|.+.|.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHH
Confidence            47899999999999999999999999999999887333223666666444445556555443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=97.17  E-value=0.0015  Score=60.59  Aligned_cols=81  Identities=23%  Similarity=0.379  Sum_probs=64.4

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~  156 (349)
                      ..-||+.++|+||+|..++|+.+.+|.||.-...-...+  .+.+-+-+.|-++ .+.|+..|+.+-.|++|+.+..-+.
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d-~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDD-FEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCC-HHHHHHHhhccceEEEeeecchHHH
Confidence            356899999999999999999999999998665543333  3456666775544 7889999999999999998888665


Q ss_pred             hhhh
Q 018896          157 VERE  160 (349)
Q Consensus       157 V~RE  160 (349)
                      ++--
T Consensus        81 iyGK   84 (218)
T COG1707          81 IYGK   84 (218)
T ss_pred             HhCc
Confidence            5543

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.16  E-value=0.0031  Score=49.32  Aligned_cols=61  Identities=16%  Similarity=0.310  Sum_probs=44.3

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe-C-----ChHHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS-G-----TERVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~-g-----dd~~veQLiKQL~K  141 (349)
                      .|.|+..|+||.|.+|++.|++.|+||.+-.+..+.+.-. =++.|. .     +++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999987655432 233332 1     22445555555543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.11  E-value=0.0016  Score=63.06  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEE--EEEEeC-ChHHHHHHHHHHhcCe
Q 018896           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSG-TERVLRQVVEQLNKLV  143 (349)
Q Consensus        75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gii--TIVV~g-dd~~veQLiKQL~KLi  143 (349)
                      .+|.++.|++...|+||+.++||++|+.+|+||+.++.......+++  ++.++. ....+++|...|+++-
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~   74 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA   74 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            46888999999999999999999999999999999999754455554  444542 2223555655555443

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.05  E-value=0.00037  Score=50.25  Aligned_cols=32  Identities=44%  Similarity=0.641  Sum_probs=29.4

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      |++.+.|+||+|++++.+|+++|.||+++.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~   32 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIA   32 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEE
Confidence            46789999999999999999999999998864

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.05  E-value=0.001  Score=67.02  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=60.2

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ..++|.+.=+|+||++++|+.++++.|+||..+.+....+.+++.|-+++  ..-+.++++|+++.+|++|..+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            45899999999999999999999999999999999776655567666764  3355788999999999998754

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=97.00  E-value=0.0049  Score=52.60  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gdd~~veQLiKQL~KLiDVikV  148 (349)
                      .+..|.+.+.|+||.|.+|...|+.+|+|+..|.--|.....  + +=|-+.+....+++++++|.+...-++|
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            367888888999999999999999999999999998875543  2 4455666666688888988876554443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.96  E-value=0.0043  Score=50.87  Aligned_cols=65  Identities=12%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHHhc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK  141 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gd-d~~veQLiKQL~K  141 (349)
                      ..+..|.+.+.|+||.|.+|...|+++|+|+..|.--|.....  + +=|-+++. +..++++++.|.+
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~   80 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN   80 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence            3456778888999999999999999999999999998876543  2 33445553 6677888888876

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.93  E-value=0.0021  Score=62.09  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHHhcCe
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLV  143 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~g--dd~~veQLiKQL~KLi  143 (349)
                      .|+++.|++.-.|+||.++.|+++|+.+|.||+.++.......+.  |++.++.  ....+++|...|+++-
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999887333344  4444543  1233555555554444

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.82  E-value=0.0082  Score=47.65  Aligned_cols=61  Identities=13%  Similarity=0.197  Sum_probs=46.0

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C----ChHHHHHHHHHHh
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G----TERVLRQVVEQLN  140 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g----dd~~veQLiKQL~  140 (349)
                      ..|.|...|+||.|.+|+..|++.|++|.+-.++--.+...  |-+.-. |    +++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999988876555433  444322 2    3455667776663

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=96.80  E-value=0.0021  Score=59.16  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--Cc--E--EEEEEeC-ChHHHHHHHHHHhcCeeee
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA--L--FTIVVSG-TERVLRQVVEQLNKLVNVI  146 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~g--i--iTIVV~g-dd~~veQLiKQL~KLiDVi  146 (349)
                      .|.+++...|+||.+.+||.+|+.+|+||++|+......  .+  +  +.+.+.- .+..++++..+|+++-+=+
T Consensus        95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL  169 (190)
T PRK11589         95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTEL  169 (190)
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999875442  22  2  5555552 3334666666665554433

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.78  E-value=0.0012  Score=47.52  Aligned_cols=33  Identities=55%  Similarity=0.990  Sum_probs=31.4

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |+|.+.+.|+||+|+.++.+|+..|+||+++..
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~   33 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTV   33 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEe
Confidence            899999999999999999999999999999864

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.77  E-value=0.0089  Score=47.08  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=39.1

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~  126 (349)
                      +.|.|+..|+||++.+|+|.|++.|+||.+-.+-.+.+.-. -+++|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~   49 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT   49 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence            68999999999999999999999999999998877755433 355554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=96.70  E-value=0.0086  Score=64.72  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEEEec
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .-.|.|.+.|++|+|+.|+.+++..+.||.+++..... .+.  +++.+. .+-+.+++|+++|.++-+|.+|...
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD-GRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN  700 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence            34899999999999999999999999999999975433 332  444443 4778899999999999999999864

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.62  E-value=0.0038  Score=64.66  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=59.4

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ..++|-+.-.|+||++.+|+.+|++.++||.++.++..+..+.-.++++-|+..-+.++++|.++.+|.+|..+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence            45778777799999999999999999999999999987766553334444455557788899999999988765

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=96.58  E-value=0.0099  Score=63.89  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=58.6

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~-gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      .-.|.|.+.|++|+|+.|+.++++-+.||.++++....+. ..+.+.+. .+-+.+..|+.+|.++-+|.+|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~  682 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK  682 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence            4589999999999999999999999999999998654322 23444443 47788999999999999999985

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.50  E-value=0.017  Score=45.52  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHHhc
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gdd~~veQLiKQL~K  141 (349)
                      |.+.+.|+||.|.++...|+++|+|+..|.--|.....  + +=|-+.+....++++++.|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            45566899999999999999999999999988876553  2 445566766678888887765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=96.45  E-value=0.015  Score=63.46  Aligned_cols=72  Identities=21%  Similarity=0.359  Sum_probs=59.5

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEe-CChHHHHHHHHHHhcCeeeeEEEec
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~-gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      -.|.|.+.|++|+|+.|+.+++..+.||.++++......+  .+++++. .+-..+++|+++|.++-+|.+|...
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL  741 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence            4889999999999999999999999999999985433123  3454444 4778899999999999999999864

>PRK06635 aspartate kinase; Reviewed

Probab=96.37  E-value=0.034  Score=55.06  Aligned_cols=121  Identities=20%  Similarity=0.256  Sum_probs=82.7

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEeCChHHHHHHHHHHhcC---eeeeEEEecCCchhhhhhe
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDISNEPHVEREL  161 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~gdd~~veQLiKQL~KL---iDVikV~dlt~~~~V~REL  161 (349)
                      ..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.+  ..++..+.|+++   ..+..+.       +.+.+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~~i~-------~~~~i  340 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD--DLEKALELLEEVKDEIGAESVT-------YDDDI  340 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence            67899999999999999999999998876665 44588888632  244555556553   2332232       56778


Q ss_pred             eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       162 aLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      +++.|...     +..-.+|++....++.+|.-++....-+-++=+.+..+..++.|..
T Consensus       341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh~  399 (404)
T PRK06635        341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALHE  399 (404)
T ss_pred             EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHHH
Confidence            88888532     2344578888888888888775444444445555666666777653

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.31  E-value=0.017  Score=46.25  Aligned_cols=61  Identities=11%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeee--ecCCCcE--EEEEEeC----ChHHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKAL--FTIVVSG----TERVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg--~Ted~gi--iTIVV~g----dd~~veQLiKQL~K  141 (349)
                      .|.|...|+||.|.+|+..|.+.|++|.+-.++  .-.+...  |-+..+|    ++...+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            688999999999999999999999999998888  3333322  5553333    34555666666543

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.21  E-value=0.012  Score=54.40  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeC--ChHHHHH
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ  134 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~g--dd~~veQ  134 (349)
                      .-|.|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+  +|.|.+++  +++.+++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            457888888999999999999999999999999999877555  47777774  4554543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.15  E-value=0.0044  Score=46.09  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+.+.+.|+||.|++++.+|+.+|+||+++..
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~   34 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV   34 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence            57889999999999999999999999999863

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.15  E-value=0.0041  Score=62.76  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             ccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       311 ~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      -..++.|++.|+|+||||++|+++|+++|+||+|+..
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q  381 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQ  381 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence            3467999999999999999999999999999999864

>PRK07334 threonine dehydratase; Provisional

Probab=96.11  E-value=0.028  Score=56.16  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=51.8

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC---CCc--EEEEEEe-CChHHHHHHHHHHhcC
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL  142 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te---d~g--iiTIVV~-gdd~~veQLiKQL~KL  142 (349)
                      ...|.|.+.|+||+|.+|+.+++..++||.++......   ..+  .+.+++. .+.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999986431   223  3555444 3778899999999885

>PRK11899 prephenate dehydratase; Provisional

Probab=96.09  E-value=0.026  Score=54.75  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=52.0

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i-iTIVV~g--dd~~veQLiKQL~KLiD  144 (349)
                      +..|.+.+.|+||.|.+|.+.|++||+|+.+|.--|+.+. + + |=|-+.|  ++..+++.+++|.+.-.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~  264 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE  264 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            6677778899999999999999999999999999988654 3 2 4444554  46667888888877554

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.07  E-value=0.026  Score=45.19  Aligned_cols=63  Identities=17%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEE-EeC----ChHHHHHHHHHHhcC
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL  142 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIV-V~g----dd~~veQLiKQL~KL  142 (349)
                      ..|.|...|+||.|.+|+..|++.|++|.+-.++-..+...  +=|. .+|    ++...+.|.+.|...
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999887665543  4443 223    556677777777543

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.06  E-value=0.0041  Score=45.00  Aligned_cols=31  Identities=29%  Similarity=0.503  Sum_probs=28.7

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ++.+.+.|+||.|++++++|+..|.||.++.
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~   31 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMY   31 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheE
Confidence            3788999999999999999999999999875

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=96.02  E-value=0.0083  Score=55.28  Aligned_cols=72  Identities=19%  Similarity=0.314  Sum_probs=50.4

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc----EEEE--EEe-CChHHHHHHHHHHhcCeeeeEEE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----LFTI--VVS-GTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g----iiTI--VV~-gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      .-+.+.+-+.||||+++++|.+|.++|+||++|..-....++    .+.+  .+. ...-.+.+|..+++.|-|=+.|+
T Consensus        91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v~  169 (176)
T COG2716          91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNVD  169 (176)
T ss_pred             ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcce
Confidence            457899999999999999999999999999999987544443    2322  222 12233666666666655544443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.02  E-value=0.11  Score=50.56  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee
Q 018896           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG  113 (349)
Q Consensus        74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg  113 (349)
                      +++|.++.|++.-.|+||+.++||++++++|.||..++..
T Consensus         4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            3468888999999999999999999999999999999986

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.99  E-value=0.01  Score=61.55  Aligned_cols=72  Identities=17%  Similarity=0.359  Sum_probs=57.1

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .-|+|-+.-.|+||++.+|+.++.+.++||.++.++..+..+.  |.|.++  +..-+.++++|.++.+|.+|..+
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence            3467777778999999999999999999999999998776654  444454  44456777888888888888754

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.96  E-value=0.023  Score=55.82  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=52.9

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCee
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN  144 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiD  144 (349)
                      .-|.+.|.+.|+||.|.+|+.++.+.|+||+.+.+-++.+.  |.++|.+. +++..++..+.|.+-..
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~  356 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK-NEEDRERAKALLEEFWT  356 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC-CHHHHHHHHHHHHhcCc
Confidence            35899999999999999999999999999999999876544  56888887 44556666666655443

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=95.95  E-value=0.0067  Score=45.09  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.2

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +.+++.+.|+||.|++++++|+..|.||+++..
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~   34 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEI   34 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEe
Confidence            468899999999999999999999999998854

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=95.89  E-value=0.021  Score=55.38  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHhc
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~K  141 (349)
                      +|++.-.|+||+.++||++++++|.||..++.....+.++  |++.++.++  ...+++...|+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            6899999999999999999999999999999887766666  555666432  234555544433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=95.86  E-value=0.041  Score=59.74  Aligned_cols=74  Identities=27%  Similarity=0.342  Sum_probs=62.2

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~d  150 (349)
                      ..-...|.|...|++|+|+.|+.++++-+.||.+++..... +...  |+|.|+ +-..+.+|+.||..+-+|..|..
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R  700 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR  700 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence            34567899999999999999999999999999999988762 2222  455555 78889999999999999999874

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=95.84  E-value=0.046  Score=53.81  Aligned_cols=66  Identities=14%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee---ecCCCc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL  142 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg---~Ted~g--iiTIVV~g-dd~~veQLiKQL~KL  142 (349)
                      -+..+|++.+.|+||.|.+++.++++.|.||.++...   .....+  .++|.++. +....++|++.|++.
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            3567999999999999999999999999999999766   222223  36777663 456678888888654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.78  E-value=0.0075  Score=43.16  Aligned_cols=31  Identities=26%  Similarity=0.522  Sum_probs=28.9

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |.+.+.|+||+|+.|+.+|+.+|.||.++.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~   32 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQV   32 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEE
Confidence            6789999999999999999999999999865

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK00194 hypothetical protein; Validated

Probab=95.71  E-value=0.0072  Score=47.61  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +++|++.-.|+||++++|+++++.+|.||..+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~   35 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDIS   35 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehh
Confidence            789999999999999999999999999998865

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=95.69  E-value=0.0072  Score=47.74  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +++|++.-.|+||++++|+++|+.+|.||..+.
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~   33 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDIS   33 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEech
Confidence            478999999999999999999999999999875

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.66  E-value=0.011  Score=45.87  Aligned_cols=32  Identities=34%  Similarity=0.579  Sum_probs=29.6

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ..|.+.+.|+||.|++|...|+..|.||.+|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~   33 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIE   33 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEE
Confidence            57888999999999999999999999999885

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=95.65  E-value=0.054  Score=53.09  Aligned_cols=71  Identities=21%  Similarity=0.417  Sum_probs=56.6

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c--EEEE--EEeCChHHHHHHHHHHhcCeeeeEE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTI--VVSGTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g--iiTI--VV~gdd~~veQLiKQL~KLiDVikV  148 (349)
                      .+..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... +  +|-|  .-+.++..+++.++.|.++-..+++
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            57888999999999999999999999999999999888754 3  2333  3445666788888888877765555

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.63  E-value=0.063  Score=40.63  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             EEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHHhc
Q 018896           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNK  141 (349)
Q Consensus        82 ISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~-gdd~~veQLiKQL~K  141 (349)
                      +++.+.++||.|.+++.+++. |.||..+.-.... +.+.+.+++. .+.+.+++++.+|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 9999999876543 2334666655 345678888888865

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=95.60  E-value=0.05  Score=54.48  Aligned_cols=65  Identities=23%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeee----ecCC-CcEEEEEEeCC-hHHHHHHHHHHhcC
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVD-KALFTIVVSGT-ERVLRQVVEQLNKL  142 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg----~Ted-~giiTIVV~gd-d~~veQLiKQL~KL  142 (349)
                      ++..|.|.+.|+||.|.+|+.+|.+.|.||.++...    +.+. ...+++.++.. .+..++|++.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            567899999999999999999999999999999875    3322 23477777643 34456888888653

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=95.57  E-value=0.44  Score=43.75  Aligned_cols=137  Identities=21%  Similarity=0.244  Sum_probs=94.3

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHHh-cCeeeeEEEe
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLN-KLVNVIKVED  150 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~gd-d~~veQLiKQL~-KLiDVikV~d  150 (349)
                      -+|+-++.|-.+|+||-|-++..=++.-|-||-++.=...+..+ +  +.|++.+| +.....+.+-++ .=+.++++..
T Consensus         2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg   81 (170)
T COG2061           2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG   81 (170)
T ss_pred             cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence            36889999999999999999999999999999988766554433 3  77777766 555666666663 2355555542


Q ss_pred             cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 018896          151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       151 lt~~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs--------~~s--ltIEvTG~~~KIdafi~~L~~  215 (349)
                      ..-  ..+-...||-=-++..-+.-|-.+-.+=+|.++|.+        +.+  ++|+.. +.+|++..++.|+.
T Consensus        82 ~~~--~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~-~~e~l~ea~~~l~e  153 (170)
T COG2061          82 ARL--REKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAV-GKEKLDEALRRLKE  153 (170)
T ss_pred             cCc--ceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEc-ChhHHHHHHHHHHH
Confidence            221  223334555444555567778888889999999984        233  455554 45777777777654

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.45  E-value=0.012  Score=45.22  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+.+.+.|+||+|++|+|.|+..|.||.|..+
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i   34 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEI   34 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEE
Confidence            47789999999999999999999999988754

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.43  E-value=0.011  Score=42.56  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +|.+.+.|+||+|++++.+|+..|.||.++.+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~   32 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRV   32 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEE
Confidence            47889999999999999999999999998854

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.37  E-value=0.18  Score=50.01  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=88.6

Q ss_pred             EEEEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           79 RHTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        79 ~htISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      ...|++.   +.|+||++.||...|.+.|+||+.++.+.++  .-++++++.  +..+++++.|++...-....    .=
T Consensus       260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i  331 (401)
T TIGR00656       260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RV  331 (401)
T ss_pred             EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eE
Confidence            3467777   7899999999999999999999999876544  347888853  23555555555543211111    11


Q ss_pred             hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       156 ~V~RELaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .+.+.+++|-|-...     ..-..+++.....+.+|.-++....-+-+.=+.+..+..++.|.+
T Consensus       332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~  396 (401)
T TIGR00656       332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE  396 (401)
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence            266788888885432     234578888888888998887666666666667777777777764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=95.36  E-value=0.048  Score=39.72  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=37.8

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHHhc
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      +.++||++.+|...+++.|+||+.+..+...+. ..+++++..  ...+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876644432 347777763  223444444433

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK12483 threonine dehydratase; Reviewed

Probab=95.29  E-value=0.44  Score=50.11  Aligned_cols=132  Identities=14%  Similarity=0.198  Sum_probs=91.8

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe--CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~--gdd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      +++.+++..-++||.|.+++.++..+  ||..+.--.... ...+.+.++  +.+...++|++.|++.=  .++.++++.
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn  419 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD  419 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence            67899999999999999999999988  999887654222 233555544  33443489999997643  477788886


Q ss_pred             hh---------------hhhheeeEEEeCCCCCHHHHHHHHHhcCc--EEEEec-----CCE----EEEEEeCChhHHHH
Q 018896          155 PH---------------VERELMLIKLNGDTSTWPEIMWLVDIFRA--KVVDIS-----EHA----LTIEVTGDPGKMVA  208 (349)
Q Consensus       155 ~~---------------V~RELaLIKV~~~~~~R~EI~~la~iFrA--kIVDvs-----~~s----ltIEvTG~~~KIda  208 (349)
                      +.               +.|| +|+.|..+ |.....++.++.++-  .|-..+     .+.    +=|++.  .++.+.
T Consensus       420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~  495 (521)
T PRK12483        420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA  495 (521)
T ss_pred             HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence            65               3454 57788776 677788888888876  333321     111    236763  377789


Q ss_pred             HHHHhccCC
Q 018896          209 VQRNLSKFG  217 (349)
Q Consensus       209 fi~~L~~fG  217 (349)
                      |++.|+..|
T Consensus       496 ~~~~l~~~g  504 (521)
T PRK12483        496 LDAALAALG  504 (521)
T ss_pred             HHHHHHHCC
Confidence            999998755

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=95.22  E-value=0.014  Score=44.50  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=29.3

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +|++...|+||.+++|+.+|+.+|-||.++..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~   32 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLST   32 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEe
Confidence            37889999999999999999999999998864

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=95.17  E-value=0.09  Score=36.64  Aligned_cols=51  Identities=18%  Similarity=0.309  Sum_probs=37.3

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHH
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQ  138 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQ  138 (349)
                      +.|.||++.++...|.+.|+||+.++.+...+. ..++++++.  +..++.++.
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~   59 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAI   59 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHH
Confidence            578999999999999999999999988764432 236777753  334444443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.17  E-value=0.016  Score=43.80  Aligned_cols=31  Identities=23%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +++.+.|+||.|+.++.+++..|.||.|+..
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~   32 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILT   32 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEe
Confidence            6889999999999999999999999998854

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=95.09  E-value=0.12  Score=49.88  Aligned_cols=66  Identities=12%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             EEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeeecCCCc--E---EEEEEeCChHHHHHHHHHHhcCee
Q 018896           79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKA--L---FTIVVSGTERVLRQVVEQLNKLVN  144 (349)
Q Consensus        79 ~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i---iTIVV~gdd~~veQLiKQL~KLiD  144 (349)
                      +..|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|.....  +   +.+..+.++..++++++.|++...
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            56677777665 999999999999999999999988876442  2   333334455578888888887654

>PRK08198 threonine dehydratase; Provisional

Probab=95.09  E-value=0.12  Score=51.28  Aligned_cols=66  Identities=11%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC---CCc--EEEEEEeC-ChHHHHHHHHHHhcC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVSG-TERVLRQVVEQLNKL  142 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te---d~g--iiTIVV~g-dd~~veQLiKQL~KL  142 (349)
                      -+..++++.+.|+||.|.++..+++..|.||.+++..+..   ..+  .++|+++. +.+.+++|++.|++.
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            3557999999999999999999999999999999987532   123  36666653 455788888888664

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=95.08  E-value=0.11  Score=40.66  Aligned_cols=56  Identities=16%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhcCeee
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNV  145 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~KLiDV  145 (349)
                      ..+.||++.+|.+.|++.|+|++-++.+.    .-+.+++..++     +.+++|++.|+++-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            46789999999999999999999997522    44777777443     3788999999985444

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.00  E-value=0.018  Score=42.50  Aligned_cols=31  Identities=26%  Similarity=0.425  Sum_probs=27.8

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +-+.+.|+||+|++|+.+|+.+|.||.++.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~   32 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQV   32 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEe
Confidence            4568899999999999999999999998764

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=94.81  E-value=0.11  Score=52.53  Aligned_cols=66  Identities=12%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiD  144 (349)
                      +..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+....  + |=|-+.|  ++..+++.+++|++.-.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~  367 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR  367 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            66677778999999999999999999999999998877653  2 4444444  45668888888877654

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.80  E-value=0.025  Score=45.32  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             EEEEEEcC-cccHHHHHHHHHhccCcceeeEeeeecCC---------Cc-EEEEEEeCChHHHHHHHHHHhcCe
Q 018896           81 TISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLV  143 (349)
Q Consensus        81 tISIlVeN-kPGVL~RItGLFsRRGyNIeSLtVg~Ted---------~g-iiTIVV~gdd~~veQLiKQL~KLi  143 (349)
                      .++++-.+ ++|.+.+|+.+++.+|+||+.+.-- +..         +- .|.+.+++.+...+.+.++|.++-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            36788889 9999999999999999999988763 211         11 366677777667777887776553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=94.75  E-value=0.023  Score=36.87  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=28.0

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |++...|+||++.++.+.|+++|.||+++..
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~   31 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQ   31 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEe
Confidence            4678889999999999999999999998865

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=94.75  E-value=0.029  Score=40.86  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|.+.+.|+||+|+.++++|+..|.||.++.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~   33 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARI   33 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEE
Confidence            57899999999999999999999999998764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK08818 prephenate dehydrogenase; Provisional

Probab=94.64  E-value=0.1  Score=52.55  Aligned_cols=52  Identities=25%  Similarity=0.391  Sum_probs=41.3

Q ss_pred             eEEEEEEEEc-CcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEeCCh
Q 018896           78 KRHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE  129 (349)
Q Consensus        78 ~~htISIlVe-NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~gdd  129 (349)
                      .-+.|.+.+. |+||+|.+|+.+|+++|+||.+|....+....+ +.|-+.+.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~  347 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS  347 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence            3578999995 999999999999999999999999955554433 666666433

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=94.48  E-value=0.04  Score=42.16  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+.+.-.|+||.|++|+|.|++.|.||.+-.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i   34 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARI   34 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEE
Confidence            57788899999999999999999999988543

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=94.38  E-value=0.039  Score=40.32  Aligned_cols=33  Identities=30%  Similarity=0.613  Sum_probs=29.8

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +-|.+.+.|+||+|++++.+|+..|.||+++..
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~   33 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQ   33 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEE
Confidence            358899999999999999999999999998753

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=94.36  E-value=0.039  Score=39.87  Aligned_cols=32  Identities=41%  Similarity=0.662  Sum_probs=28.7

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|.+.+.|+||+|++++.+|+..+.||.++..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~   33 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQ   33 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEE
Confidence            47788999999999999999999999988753

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.35  E-value=0.22  Score=39.09  Aligned_cols=56  Identities=13%  Similarity=0.392  Sum_probs=42.1

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH----HHH-HHHHHHhcCeee
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV  145 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~----~ve-QLiKQL~KLiDV  145 (349)
                      +.+.||.+.+|...|++.|+||+-++.+.    .-+.+++..++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522    447777775542    354 577778884443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.29  E-value=0.3  Score=37.67  Aligned_cols=52  Identities=15%  Similarity=0.425  Sum_probs=42.5

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhc
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK  141 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~K  141 (349)
                      ..+.||++.||...|++.|+|++.++.    ....+++++..++     ..++.|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~----s~~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLIST----SEVSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEc----CCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            567899999999999999999998863    2245788887544     478899999998

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.15  E-value=0.26  Score=39.09  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEeC-C-hHHHHHHHHHHhcCeeeeEEEecCCchh
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~g-d-d~~veQLiKQL~KLiDVikV~dlt~~~~  156 (349)
                      ..+.+.+.++||-|.+++.+++  +-||..+.-.... +.+.+.++++. + .+.++++++.|++.=  .++.++++.+.
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~   77 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL   77 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence            4788999999999999999999  6688766655433 33445555542 3 566888888887643  24556666554


Q ss_pred             h
Q 018896          157 V  157 (349)
Q Consensus       157 V  157 (349)
                      .
T Consensus        78 ~   78 (85)
T cd04906          78 A   78 (85)
T ss_pred             H
Confidence            4

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=94.15  E-value=0.16  Score=56.02  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=51.6

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHHhcCeee
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV  145 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g----dd~~veQLiKQL~KLiDV  145 (349)
                      ...+|.|+..|+||+|.+|+++|++.|+||.+-.+....+...=++.|.+    +++..+.|.+.|.+.++|
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            56799999999999999999999999999999888877333222333332    345677788788776654

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.07  E-value=0.035  Score=42.30  Aligned_cols=30  Identities=33%  Similarity=0.536  Sum_probs=27.2

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +.+.+.|+||.|++|-..|+.+|.||-+|.
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~   31 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIE   31 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE
Confidence            567788999999999999999999998873

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=94.06  E-value=0.033  Score=42.45  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=28.5

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +|++.-.|+||++++|++.++.+|.||..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~   31 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESD   31 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeee
Confidence            4788889999999999999999999999875

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.06  E-value=0.049  Score=42.58  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +|++...|+||.|++++|.|++.|.||.+-.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I   33 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKV   33 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEE
Confidence            68899999999999999999999999987543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=94.02  E-value=0.061  Score=46.20  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=32.3

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ..+.|.+.+.|+||+|+.|+.+|+..|.||.++.+
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~   89 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATEC   89 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEE
Confidence            47899999999999999999999999999998754

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=93.96  E-value=0.052  Score=41.98  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+|++.-.|+||.|++|+|.|++.|.||.+-.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i   33 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARA   33 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEE
Confidence            378999999999999999999999999987543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=93.88  E-value=0.82  Score=45.61  Aligned_cols=122  Identities=15%  Similarity=0.133  Sum_probs=79.0

Q ss_pred             EEEEEEEEcCc-ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896           79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (349)
Q Consensus        79 ~htISIlVeNk-PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V  157 (349)
                      ...|+++-.|. ||.++||.+.|.+.|+||+.++...  +  -+++++..  ...+++.+.|+++-         ..-.+
T Consensus       271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~  335 (403)
T PRK08210        271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSV  335 (403)
T ss_pred             cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEE
Confidence            34666666665 9999999999999999999997762  2  35555552  23455555555531         02236


Q ss_pred             hhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       158 ~RELaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .+.+++|.|-...     ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.+
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh~  398 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALHD  398 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHHH
Confidence            6788888886432     334467777777788888766444444444455556666666653

>PRK05092 PII uridylyl-transferase; Provisional

Probab=93.85  E-value=0.23  Score=55.14  Aligned_cols=68  Identities=16%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEE-e----CChHHHHHHHHHHhcCee
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-S----GTERVLRQVVEQLNKLVN  144 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV-~----gdd~~veQLiKQL~KLiD  144 (349)
                      .....|.|...|+||.|.+|+++|++.|+||.+..+.-..+...  |.|.- +    .++...+.|.+.|.+.++
T Consensus       841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            34579999999999999999999999999999999984322222  33332 1    134456777777766553

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=93.83  E-value=0.24  Score=44.00  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEEeCChHHHHHHHHHHhc
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV~gdd~~veQLiKQL~K  141 (349)
                      .-.+.|-++|+||-|+||+++|...++|++-+-+-.++... ++-+-++.    ++..++.|++
T Consensus        69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed----~d~~~~aLed  128 (142)
T COG4747          69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED----IDRAIKALED  128 (142)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH----HHHHHHHHHH
Confidence            45889999999999999999999999999999988887743 33333443    3444555544

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=93.82  E-value=0.37  Score=50.00  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=51.8

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHHhcCe
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV  143 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~gd-d~~veQLiKQL~KLi  143 (349)
                      +..|.+.+.|+||.|.+|..+|+++|+|+..|.--++....  + +=|-+++. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            56788888999999999999999999999999988865443  2 33445554 467888999888876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=93.72  E-value=0.064  Score=39.58  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|.+...|+||+|++++++|+..|.||.++.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~   33 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKI   33 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEE
Confidence            57889999999999999999999999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=93.52  E-value=0.094  Score=40.30  Aligned_cols=34  Identities=35%  Similarity=0.543  Sum_probs=29.7

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ...|.+...|+||+|+.|+..++..|-||.++.+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~   39 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINA   39 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEe
Confidence            4789999999999999999999999999999875

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=93.50  E-value=0.27  Score=35.92  Aligned_cols=49  Identities=14%  Similarity=0.399  Sum_probs=38.5

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHH
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL  139 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL  139 (349)
                      .++||...+|...|.+.|+|++.++.+.    .-+++++..++  +.++.|++.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996422    45788887655  6677777665

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=93.32  E-value=0.06  Score=38.76  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |.+.+.|+||.|++|+..++..|.||.++..
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~   31 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSH   31 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEE
Confidence            3578899999999999999999999998754

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=93.25  E-value=0.071  Score=39.89  Aligned_cols=32  Identities=38%  Similarity=0.491  Sum_probs=29.3

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +|.+.+.|+||.|++|+..++..|.||.++..
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~   32 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDL   32 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEE
Confidence            47899999999999999999999999998764

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=93.23  E-value=0.18  Score=42.24  Aligned_cols=46  Identities=30%  Similarity=0.490  Sum_probs=38.1

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIV  124 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIV  124 (349)
                      |++..|+|.-.||||+.+.|+++|++.|.||.-++  .|--.+++|+.
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~   46 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMI   46 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceee
Confidence            57889999999999999999999999999998665  44445565553

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=93.17  E-value=0.38  Score=37.71  Aligned_cols=55  Identities=15%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--H-HHHHHHHHHhcCee
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVN  144 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~-~veQLiKQL~KLiD  144 (349)
                      .-..||.+.+|.+.|++.|+|++-+..+.    .-+++++..++  . .++.|++-|+|+-+
T Consensus        11 m~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~   68 (73)
T cd04934          11 KSLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGT   68 (73)
T ss_pred             CccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheE
Confidence            34579999999999999999999997522    44777776432  3 78888888888443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=93.12  E-value=1.7  Score=45.07  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd--~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      .+.+.-.....+++|++.||.+.+++.|+|++-+..+.++..  +++++.+++  +..+.+.+....+..  .|+     
T Consensus       308 ~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v~-----  378 (447)
T COG0527         308 ALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EVE-----  378 (447)
T ss_pred             EEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eEE-----
Confidence            344444555566679999999999999999999988776665  888887544  333344443333333  232     


Q ss_pred             hhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          155 PHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       155 ~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                        +++.+++|-+--.     +.--+++++-...++-+|.-++...+-|-+.=+.+..+..++.|..
T Consensus       379 --~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH~  442 (447)
T COG0527         379 --VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALHE  442 (447)
T ss_pred             --eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHHH
Confidence              6778888887533     2345688888899999999999777778777788888888877754

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=93.05  E-value=0.082  Score=36.27  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      |.+.+.|+||++++++-+|+..++||.++.+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~   31 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNT   31 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEe
Confidence            4678999999999999999999999998754

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=93.05  E-value=0.47  Score=49.59  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--c-E-EEEEEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--g-i-iTIVV~gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      ..+-.|.+.+.|+||.|.+|..+|+.+|+|+..|.--++...  . + +=|-+.+....++++++.|.+..+.+.|.
T Consensus        29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~  105 (464)
T TIGR01270        29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS  105 (464)
T ss_pred             CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence            345567777799999999999999999999999988876543  2 3 34456677778999999999988876664

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=93.05  E-value=0.051  Score=39.90  Aligned_cols=30  Identities=23%  Similarity=0.370  Sum_probs=26.6

Q ss_pred             EEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          318 SMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       318 s~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      -+.-+|+||+|++|+.++++.|.||.++.+
T Consensus         3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~   32 (69)
T cd04901           3 LHIHKNVPGVLGQINTILAEHNINIAAQYL   32 (69)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCCHHHHhc
Confidence            457799999999999999999999987654

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK03381 PII uridylyl-transferase; Provisional

Probab=93.04  E-value=0.26  Score=53.84  Aligned_cols=46  Identities=26%  Similarity=0.424  Sum_probs=38.0

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeC
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG  127 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~g  127 (349)
                      ..|.|+..|+||.+++|+++|++.|+||.+-.+.-  ..|.  .++.|.+
T Consensus       600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~  647 (774)
T PRK03381        600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSP  647 (774)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEEC
Confidence            48999999999999999999999999999998874  3343  4555553

>PRK07431 aspartate kinase; Provisional

Probab=92.85  E-value=1.1  Score=46.95  Aligned_cols=125  Identities=14%  Similarity=0.171  Sum_probs=81.8

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheee
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaL  163 (349)
                      -+.++||.++||.+.|.+.|+||+.++.+..+.. .-+.++++.++  +++..+.|+++.+=+..    .+-.+.+++++
T Consensus       277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~  350 (587)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK  350 (587)
T ss_pred             cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence            3568899999999999999999999987765543 23667776432  33333333332210000    12226678999


Q ss_pred             EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       164 IKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      |.|--..     .--..++.....++.+|.-++....-|-+.=+.+..+..++.|.+
T Consensus       351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~  407 (587)
T PRK07431        351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCE  407 (587)
T ss_pred             EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHH
Confidence            9886543     234477888888888898887665555555566667777777765

>PLN02550 threonine dehydratase

Probab=92.76  E-value=3.3  Score=44.54  Aligned_cols=134  Identities=17%  Similarity=0.304  Sum_probs=93.1

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      .+++.+.+.+-++||.|.+++.++..+  ||..+.--.... .+.+.+.+. .+.+.+++|+..|++.=  .++.||++.
T Consensus       415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            466889999999999999999999987  999887766322 233555544 36677999999998754  588888886


Q ss_pred             hhh--------------hhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--CC---EEEEEEeCChhHHHHH
Q 018896          155 PHV--------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--EH---ALTIEVTGDPGKMVAV  209 (349)
Q Consensus       155 ~~V--------------~RELaLIKV~~~~~~R~EI~~la~iFrAk--IVDv----s--~~---sltIEvTG~~~KIdaf  209 (349)
                      +..              .|| +|+.+..+ +.....++.++.++.+  |...    +  ..   -+=||+.  +++++.|
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E-~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l  566 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDE-LLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF  566 (591)
T ss_pred             hHHhhhhhheeccccccCce-EEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence            654              222 36677665 5666778888877763  3221    1  11   1336775  4888889


Q ss_pred             HHHhccCCc
Q 018896          210 QRNLSKFGI  218 (349)
Q Consensus       210 i~~L~~fGI  218 (349)
                      ++.|+..|.
T Consensus       567 ~~~l~~~gy  575 (591)
T PLN02550        567 KSRANALGY  575 (591)
T ss_pred             HHHHHHcCC
Confidence            999887663

>PLN02317 arogenate dehydratase

Probab=92.74  E-value=0.53  Score=48.08  Aligned_cols=66  Identities=14%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC----------------cE-EEEEEeC--ChHHHHHHHHHH
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSG--TERVLRQVVEQL  139 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~----------------gi-iTIVV~g--dd~~veQLiKQL  139 (349)
                      +..|.+.++|+||.|.++...|+.||+|+..|.--|....                .+ |=|-+++  .+..+++.++.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            5667777799999999999999999999999988775443                12 3333444  356678888887


Q ss_pred             hcCee
Q 018896          140 NKLVN  144 (349)
Q Consensus       140 ~KLiD  144 (349)
                      .+...
T Consensus       363 ~~~~~  367 (382)
T PLN02317        363 QEFAT  367 (382)
T ss_pred             HHhcC
Confidence            77554

>PRK07431 aspartate kinase; Provisional

Probab=92.70  E-value=1.5  Score=46.06  Aligned_cols=124  Identities=13%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcE--EEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhhe
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~gi--iTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~REL  161 (349)
                      +.++||.++++.++|.++|+||+.++.....+ .+.  ++++++.++ ..+..++++|.+..+...++       +++.+
T Consensus       447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i~-------~~~~v  519 (587)
T PRK07431        447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVE-------DGPAI  519 (587)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceEE-------EeCCe
Confidence            45789999999999999999999998764333 233  667776332 33455566665544444333       66788


Q ss_pred             eeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-C
Q 018896          162 MLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-F  216 (349)
Q Consensus       162 aLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-f  216 (349)
                      ++|.|--..     .--..+++.....+.+|.-++...+-|-+.=+.+..+..++.|.. |
T Consensus       520 a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh~~f  580 (587)
T PRK07431        520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVHQAF  580 (587)
T ss_pred             EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHHHHh
Confidence            988885432     334478888889999999999888888887788888888887764 5

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.67  E-value=0.066  Score=41.16  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=27.7

Q ss_pred             EEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          317 LSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       317 ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +++.=.++||++++|+..|+.+|-||..+.
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~   31 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVG   31 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecc
Confidence            678889999999999999999999999884

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=92.61  E-value=0.84  Score=32.39  Aligned_cols=50  Identities=16%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      ..+.||++.|+.+.+++.|+|++.++..    +..+++++..  ...+++.+-|+|
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~--~d~~~~~~~l~~   59 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDE--DDAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeH--HHHHHHHHHHHH
Confidence            4577999999999999999999999832    2457888873  223444444444

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=92.56  E-value=0.38  Score=44.23  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=57.9

Q ss_pred             CceEEEEEEEE--cCcccHHHHHHHHHhccCcceeeEeeeec--CCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896           76 KVKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (349)
Q Consensus        76 ~m~~htISIlV--eNkPGVL~RItGLFsRRGyNIeSLtVg~T--ed~giiTIVV~gdd~~veQLiKQL~KLiDVikV~d  150 (349)
                      .|-.+.|.++.  .++||+|..|+++.+.||++|..+-....  .++..+||++++  ..-..++.||.|+--|.+|.-
T Consensus        90 ~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I  166 (167)
T COG2150          90 LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI  166 (167)
T ss_pred             hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence            46677888887  46899999999999999999998877744  344579999863  334558899999999988863

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=92.42  E-value=0.14  Score=40.38  Aligned_cols=31  Identities=19%  Similarity=0.457  Sum_probs=28.0

Q ss_pred             eEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVI  345 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl  345 (349)
                      +.|.+...|+||.+++++|.|++.|.||.+-
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A   32 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEA   32 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEE
Confidence            4677888999999999999999999999874

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=91.81  E-value=1.9  Score=43.70  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             ccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc---CeeeeEEEecCCchhhhhheeeEEE
Q 018896           90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL  166 (349)
Q Consensus        90 PGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K---LiDVikV~dlt~~~~V~RELaLIKV  166 (349)
                      +|++.||...|++.|+||+.++.+.++  .-+.++++.++  .+...+.|.+   ...+..|.       +.+.+++|.|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv  383 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL  383 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence            899999999999999999999744332  23777776433  3333333332   33343343       6678899998


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       167 ~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      -..     +.--.+|++.....+-+|.-++....-|-++=+.+..+..++.|.+
T Consensus       384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~  437 (441)
T TIGR00657       384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN  437 (441)
T ss_pred             EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence            432     3445688888888888887775443444455455666666776653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=91.64  E-value=0.85  Score=50.08  Aligned_cols=66  Identities=23%  Similarity=0.310  Sum_probs=49.2

Q ss_pred             cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHh
Q 018896           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLN  140 (349)
Q Consensus        75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~  140 (349)
                      .......+.|...|+||.|.+|+.+|+..|+||.+..+....+...  |-+.-. |   +++..+.|.++|.
T Consensus       775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~  846 (850)
T TIGR01693       775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA  846 (850)
T ss_pred             CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999987655443  444321 1   2355666666664

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK09034 aspartate kinase; Reviewed

Probab=91.60  E-value=3.2  Score=42.61  Aligned_cols=118  Identities=12%  Similarity=0.204  Sum_probs=75.0

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--HH-HHHHHHHhcCeeeeEEEecCCchhhhhheee
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--~v-eQLiKQL~KLiDVikV~dlt~~~~V~RELaL  163 (349)
                      ..+||++.||.+.|++.|+||+-++    ....-++++++.++.  .. ..+.+.|++-..+..|.       +.+.+++
T Consensus       319 ~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~  387 (454)
T PRK09034        319 NREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAI  387 (454)
T ss_pred             CCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEE
Confidence            3479999999999999999999983    222347888875432  11 55666666544443343       6778999


Q ss_pred             EEEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896          164 IKLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       164 IKV~~~-----~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      |.|--.     +..-..+++.....+.+|.-++  ....-|-++=+.+..+..++.|..
T Consensus       388 VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~  446 (454)
T PRK09034        388 IMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYN  446 (454)
T ss_pred             EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHH
Confidence            999422     2345578888888888885443  222333333344555555666553

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=91.33  E-value=0.47  Score=39.87  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=52.5

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i----iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      +-|..|..|.++-...|..+.+++.++....+ +    ++|.+.|+-..+-..+++|+++..++.|++++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            45789999999999999999999999655443 2    78889999999999999999999999999876

>PRK04435 hypothetical protein; Provisional

Probab=91.29  E-value=0.25  Score=43.50  Aligned_cols=39  Identities=33%  Similarity=0.386  Sum_probs=35.2

Q ss_pred             CCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       309 ~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ...-+..+|.+.+.|+||+|+.|...+++.|-||.++..
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q  102 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQ  102 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence            456688999999999999999999999999999998754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=91.25  E-value=0.65  Score=51.63  Aligned_cols=66  Identities=8%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe---C----ChHHHHHHHHHHhcCe
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV  143 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~---g----dd~~veQLiKQL~KLi  143 (349)
                      ....|.|+..|+||.|.+|+++|++.|+||.+-.+..+.+...=++.|.   |    ++...++|.+.|.+.+
T Consensus       813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999987744333233332   2    2345666777765544

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=90.99  E-value=0.82  Score=36.62  Aligned_cols=40  Identities=10%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd  129 (349)
                      ..++||++.+|...|++.|+||+-++.++    .-+.+++..++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence            46789999999999999999999997522    44777777544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=90.94  E-value=0.88  Score=49.82  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL  120 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi  120 (349)
                      ...+|.|...|+||+|.+|+++|+..|+||.+..+....+...
T Consensus       706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~  748 (774)
T PRK03381        706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVV  748 (774)
T ss_pred             CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEE
Confidence            4589999999999999999999999999999999987744433

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=90.93  E-value=0.22  Score=37.16  Aligned_cols=32  Identities=38%  Similarity=0.549  Sum_probs=29.5

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|.+...|+||+|++|+..+++.|.||..+..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~   33 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQ   33 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEe
Confidence            57899999999999999999999999998853

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=90.88  E-value=1.5  Score=30.62  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      ..+++|++.++...|++.++++..++.+..+  ..++++++.  ...+.+.+.|+|
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~--~~i~~~v~~--~~~~~~~~~l~~   61 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSSE--VNISFVVDE--DDADKAVKALHE   61 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc--eeEEEEEeH--HHHHHHHHHHHH
Confidence            4478999999999999999999998875522  336666763  334444555544

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK05092 PII uridylyl-transferase; Provisional

Probab=90.86  E-value=0.83  Score=50.82  Aligned_cols=63  Identities=27%  Similarity=0.391  Sum_probs=48.0

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-EEEEEE---eC----ChHHHHHHHHHHhc
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVV---SG----TERVLRQVVEQLNK  141 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-iiTIVV---~g----dd~~veQLiKQL~K  141 (349)
                      ...|.|+..|+||++.+|+++|++.|+||.+-.+..+.+.- +-++.|   +|    ++...+.|.+.|.+
T Consensus       732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~  802 (931)
T PRK05092        732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIED  802 (931)
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999988765543 345555   23    33456666666654

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=90.82  E-value=0.98  Score=34.81  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=42.8

Q ss_pred             eEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc
Q 018896          163 LIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI  218 (349)
Q Consensus       163 LIKV~~~--~~~R~EI~~la~iFrAkI------VDv----s~~sltIEvTG~~~KIdafi~~L~~fGI  218 (349)
                      ++|+...  ....+-|.++++.|+..+      ||-    .-..+++|+.|++++++++++.|+..|+
T Consensus         4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v   71 (76)
T PF09383_consen    4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV   71 (76)
T ss_dssp             EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence            5566543  456778999999987655      333    4567999999999999999999999984

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=90.70  E-value=0.26  Score=37.67  Aligned_cols=32  Identities=13%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .|.+...|++|+|+.|+.+++..|.||.++.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~   33 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEI   33 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEE
Confidence            47889999999999999999999999998875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=90.64  E-value=0.22  Score=38.77  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=29.3

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      -+|++.=.++||+.++|+++++.+|.||..+.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~   33 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSR   33 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEce
Confidence            47888999999999999999999999998765

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=90.55  E-value=0.87  Score=33.22  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=37.2

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      .++||++.|+...|++.|+|++.++.+..+  ..+.+++..++  .+++++.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence            468999999999999999999999876633  45777787433  3444444443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=90.40  E-value=1.2  Score=32.11  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g  127 (349)
                      +.+.||++.||...+++.|+|++.++.+.++  ..+++++..
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~   50 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN   50 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence            4578999999999999999999999876533  457788874

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=90.32  E-value=1  Score=49.53  Aligned_cols=42  Identities=17%  Similarity=0.364  Sum_probs=37.5

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA  119 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g  119 (349)
                      ....|.|+..|+||.|.+|++.|++.|+||.+-.+..|.+.-
T Consensus       667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~  708 (850)
T TIGR01693       667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV  708 (850)
T ss_pred             CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCE
Confidence            345899999999999999999999999999999998777653

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=90.20  E-value=0.96  Score=32.70  Aligned_cols=51  Identities=14%  Similarity=0.293  Sum_probs=37.3

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~  140 (349)
                      ..+.||++.||...+++.|+|++.++.+..+  ..+++++..++  .++.++.|+
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh   61 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH   61 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence            4578999999999999999999999875532  45788887432  344444443

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK05007 PII uridylyl-transferase; Provisional

Probab=90.04  E-value=0.96  Score=50.25  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD  117 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted  117 (349)
                      -..|.|+..|+||+|.+|+++|++.|+||.+..+..+.+
T Consensus       701 ~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~d  739 (884)
T PRK05007        701 GTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRD  739 (884)
T ss_pred             eEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCC
Confidence            348999999999999999999999999999999877766

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=90.01  E-value=2.9  Score=40.03  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=58.6

Q ss_pred             ceEEEEEEEEcCccc--HHHHHHHHHhccCcceeeEeeeecCCCc--EEEE--EEeC-ChHHHHHHHHHHhcCeeeeEEE
Q 018896           77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        77 m~~htISIlVeNkPG--VL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTI--VV~g-dd~~veQLiKQL~KLiDVikV~  149 (349)
                      ...|.+++...++++  +..++...+...+|.+.++.+.+.++++  .++.  ...+ ++..+++++.+|.....|.+|.
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            346788888888665  6999999999999999999998765544  3444  3443 6788999999999999999886

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.78  E-value=0.99  Score=34.32  Aligned_cols=46  Identities=28%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~  140 (349)
                      +.||++.||+..++..|+||.-++   ++  .-+.+.|+.+  .+++.++-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~--~~~~ilV~~~--~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SE--ISISILVKEE--DLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ES--SEEEEEEEGG--GHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Ee--eeEEEEEeHH--HHHHHHHHhc
Confidence            599999999999999999998888   33  2356667633  3444444443

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=89.44  E-value=0.37  Score=39.53  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CccceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       310 ~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      .+-.+..|-+.+.|+||.|.++-..|+.+|.|+-+|.
T Consensus        10 ~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~Ie   46 (90)
T cd04931          10 NKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIE   46 (90)
T ss_pred             CCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence            3344577888889999999999999999999998763

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=89.17  E-value=1.5  Score=48.83  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=48.1

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEE-eC---ChHHHHHHHHHHhcCe
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG---TERVLRQVVEQLNKLV  143 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV-~g---dd~~veQLiKQL~KLi  143 (349)
                      ....+|.|...|+||+|.+|++.|++.|.||.+-.+....+...  +.|.- +|   ++...+.|.++|.+.+
T Consensus       794 ~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l  866 (869)
T PRK04374        794 GRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACL  866 (869)
T ss_pred             CCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            45679999999999999999999999999999999988844333  33331 12   1222366666665443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=88.98  E-value=0.3  Score=49.30  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=30.9

Q ss_pred             eeEEEEEEe-CCCchhhhhhhhhcccccccceeee
Q 018896          314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       314 ~~~ls~~V~-n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+.|.+.|. |+||+|.+|.++|+.+|.||.+|..
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies  329 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS  329 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE
Confidence            588999995 9999999999999999999998764

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=88.94  E-value=1.4  Score=48.89  Aligned_cols=123  Identities=16%  Similarity=0.240  Sum_probs=73.1

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe---C---ChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS---G---TERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~---g---dd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      ..|.|+..|+||++.+|++.|++.|+||.+-.+..+.+.-. =++.|.   |   ++...++|.+.|.+.++-..     
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~-----  752 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK-----  752 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence            48999999999999999999999999999988866555432 244442   2   13345566666655443210     


Q ss_pred             CchhhhhheeeEEEeCCCCCHHHHHHHHHhc--CcEE---EEecCCEEEEEEeCC--hhHHHHHHHHhccCCc-EEEee
Q 018896          153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIF--RAKV---VDISEHALTIEVTGD--PGKMVAVQRNLSKFGI-KELAR  223 (349)
Q Consensus       153 ~~~~V~RELaLIKV~~~~~~R~EI~~la~iF--rAkI---VDvs~~sltIEvTG~--~~KIdafi~~L~~fGI-lEiaR  223 (349)
                        + ....+     +.++  +      ...|  ..+|   -+.++++.+||+...  |+=+-.+-+.|..+|| +..||
T Consensus       753 --~-~~~~~-----~~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~Ak  815 (854)
T PRK01759        753 --L-KKLNL-----EENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAK  815 (854)
T ss_pred             --C-cchhc-----cccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEE
Confidence              0 00000     1011  0      0112  1222   124566777777765  7777777777887774 34444

>PRK09224 threonine dehydratase; Reviewed

Probab=88.89  E-value=15  Score=38.44  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcEEEEEEe--CChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDISN  153 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~giiTIVV~--gdd~~veQLiKQL~KLiDVikV~dlt~  153 (349)
                      -++..+++..-++||.|.+++.+++  +-||.-+.--... +.+.+.+.+.  +.+..+++|++.|++.=  .+++++++
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~  401 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD  401 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence            3578999999999999999999999  6899888765532 2234544444  33445889999997744  57778877


Q ss_pred             chhh
Q 018896          154 EPHV  157 (349)
Q Consensus       154 ~~~V  157 (349)
                      .+..
T Consensus       402 ne~~  405 (504)
T PRK09224        402 DELA  405 (504)
T ss_pred             CHHH
Confidence            6543

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=88.89  E-value=3.5  Score=27.95  Aligned_cols=46  Identities=17%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHH
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE  137 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiK  137 (349)
                      +.+|.+.|+...+++.++||+.++.+..  ...+++++..+  ..+++.+
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~   57 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVK   57 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHH
Confidence            4799999999999999999999987764  23477777632  3444443

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK05007 PII uridylyl-transferase; Provisional

Probab=88.83  E-value=1.2  Score=49.44  Aligned_cols=67  Identities=15%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHhcC
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLNKL  142 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~KL  142 (349)
                      ......|.|...|+||.|.+|+.+|.+.|+||.+-.+.--.+...  |-|.-. |   +++..+.|.++|...
T Consensus       805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~  877 (884)
T PRK05007        805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEA  877 (884)
T ss_pred             CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999988887555543  444332 2   234456666666443

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=88.79  E-value=1.3  Score=31.96  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=36.9

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      .+.||++.++...+++.|+||+-++.+..+  ..+++++..+  ..+++.+.|++
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~   62 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence            477999999999999999999999876533  4477777632  24444444444

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=88.72  E-value=0.46  Score=37.76  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .+|.+.-.|+||.|.+|+..|++-|.+|.+-.+
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkI   34 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYI   34 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEE
Confidence            578999999999999999999999999988654

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=88.60  E-value=0.38  Score=37.26  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             EEEEEEeCCCchhhhhhhhhccccccccee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVI  345 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl  345 (349)
                      +|.+.+.|+||.|.+|-..|+.+|.|+-.|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~I   31 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHI   31 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEE
Confidence            466777999999999999999999998776

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK14434 acylphosphatase; Provisional

Probab=88.48  E-value=1.2  Score=36.67  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr---AkIVDvs~~sltIEvTG~~-~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++   +.|-...+.++.|++.|++ ++|+.|++.|+.
T Consensus        16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            45889999999999   9999999999999999998 699999999975

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=88.44  E-value=3.7  Score=29.05  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g  127 (349)
                      ..+.||++.++...+++.|+|++.++..    ...+++++..
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~   47 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE   47 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence            4577999999999999999999999842    2447788763

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=88.27  E-value=1.6  Score=48.76  Aligned_cols=46  Identities=13%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEE
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV  125 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV  125 (349)
                      .+|.|+..|+||.+.+|+|.|++.|+||.+-.+-.+.+.-. =++.|
T Consensus       705 t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V  751 (895)
T PRK00275        705 TQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIV  751 (895)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEE
Confidence            38999999999999999999999999999988866654322 24444

>PRK09084 aspartate kinase III; Validated

Probab=88.23  E-value=9.9  Score=39.11  Aligned_cols=114  Identities=15%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH-------HHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~-------~veQLiKQL~KLiDVikV~dlt~~~~V~RE  160 (349)
                      ++||.++||...|++.|+||+-++.+    ..-++++++.++.       ..+.+.+.|+++..   +       .+.+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~ss----e~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~  383 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTS----EVSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG  383 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEecc----CcEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence            68999999999999999999999843    2347788875442       22455555654221   2       25678


Q ss_pred             eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       161 LaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      +++|.|--..     .--+.++......+-.++..+.....|-+.=+.+..+..++.|.+
T Consensus       384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~  443 (448)
T PRK09084        384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQ  443 (448)
T ss_pred             eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHH
Confidence            9999996543     222345544444566777766666666665566666666766653

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=88.04  E-value=1.4  Score=43.67  Aligned_cols=154  Identities=17%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe--CChHHHHHHHHHHhcCeeeeE----
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS--GTERVLRQVVEQLNKLVNVIK----  147 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~--gdd~~veQLiKQL~KLiDVik----  147 (349)
                      .|+..+|.+--.++||+.++|++.+.++|.||....--...+.++  |++...  +.+...+++...+..+.+=..    
T Consensus         4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~   83 (287)
T COG0788           4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR   83 (287)
T ss_pred             CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence            356789999999999999999999999999999887773333454  666655  332345666655544333110    


Q ss_pred             ---------EE-ecCCchhhhhhee--------eEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 018896          148 ---------VE-DISNEPHVERELM--------LIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV  209 (349)
Q Consensus       148 ---------V~-dlt~~~~V~RELa--------LIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdaf  209 (349)
                               |- -.+.+.+=-.+|+        =+.|.+--.+-.+...+++.|+----.+.-+.-+     .++.=+..
T Consensus        84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~  158 (287)
T COG0788          84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL  158 (287)
T ss_pred             EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence                     00 1111211111111        0111111145567788888887655444332211     46677788


Q ss_pred             HHHhccCCcEEEeeccceeeecCcCCCCccc
Q 018896          210 QRNLSKFGIKELARTGKIALRREKLGDTAPF  240 (349)
Q Consensus       210 i~~L~~fGIlEiaRTG~iAL~Rg~~~~~~~~  240 (349)
                      +++++.||+      -.+-|+|=-+.++..|
T Consensus       159 ~~ll~~~~~------DlvVLARYMqILS~d~  183 (287)
T COG0788         159 LELLEEYGA------DLVVLARYMQILSPDF  183 (287)
T ss_pred             HHHHHHhCC------CEEeehhhHhhCCHHH
Confidence            899999982      2345777655555444

>PRK06291 aspartate kinase; Provisional

Probab=87.91  E-value=3.9  Score=42.02  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee---eeEEEecCCchhhhhheeeE
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN---VIKVEDISNEPHVERELMLI  164 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD---VikV~dlt~~~~V~RELaLI  164 (349)
                      +.||++.|+...|++.|+||+-++.+.++  .-++++++.++  .++.++.|++...   ...|       .+.+++++|
T Consensus       333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~~~~~i-------~~~~~~a~I  401 (465)
T PRK06291        333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEGLVRDV-------TFDKDVCVV  401 (465)
T ss_pred             CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHhcCcce-------EEeCCEEEE
Confidence            78999999999999999999998866433  33677776432  3333444433211   1112       366788999


Q ss_pred             EEeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896          165 KLNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       165 KV~~~~-----~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .|--..     ..-..++......+.+|.-++  ....-|-+.=+.+..+..++.|..
T Consensus       402 svvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~  459 (465)
T PRK06291        402 AVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD  459 (465)
T ss_pred             EEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence            886543     234467777777788885554  444445455556667777777654

>PRK03059 PII uridylyl-transferase; Provisional

Probab=87.79  E-value=1.6  Score=48.46  Aligned_cols=47  Identities=26%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~  126 (349)
                      ..|.|+..|+||.+++|+|+|+..|.||.+-.+-.+.+.-. =++.|.
T Consensus       679 ~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~  726 (856)
T PRK03059        679 LQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVL  726 (856)
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEe
Confidence            38999999999999999999999999999988866654433 355553

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=87.65  E-value=2.3  Score=32.45  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=30.3

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g  127 (349)
                      ..|.||.+.+|.+.++++|+||+-++.. .+   -+++++..
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~   46 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG   46 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence            4578999999999999999999999554 22   36677763

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=87.15  E-value=24  Score=37.07  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      -+...+++..-++||.|.+++.++..+  ||.-+.--.... .+.+.+.+. .+.+.+++|+++|++.  =..+.++++.
T Consensus       323 ~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~--Gy~~~dls~n  398 (499)
T TIGR01124       323 QREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDG--GYSVVDLTDD  398 (499)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHc--CCCeEECCCC
Confidence            367899999999999999999999984  998887765332 233555544 2567799999999774  3667777775


Q ss_pred             hh
Q 018896          155 PH  156 (349)
Q Consensus       155 ~~  156 (349)
                      +.
T Consensus       399 e~  400 (499)
T TIGR01124       399 EL  400 (499)
T ss_pred             HH
Confidence            43

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=87.12  E-value=0.81  Score=35.43  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=27.7

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      .-+|++.=.|+||++++|++..++.|-||..+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~   35 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQ   35 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEE
Confidence            4578999999999999999999999999987754

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=86.88  E-value=0.69  Score=39.55  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             cceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ..+..|-+.+.|+||.|.+|-..|+.+|.|+-.|.
T Consensus        39 ~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IE   73 (115)
T cd04930          39 PQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLE   73 (115)
T ss_pred             cccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence            34678888889999999999999999999988763

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK14426 acylphosphatase; Provisional

Probab=86.60  E-value=2  Score=35.23  Aligned_cols=45  Identities=4%  Similarity=0.022  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|..+.++|..++  |.|-...+.++.+++.|++++|++|++.|+.
T Consensus        18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~   64 (92)
T PRK14426         18 GFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE   64 (92)
T ss_pred             CchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence            56899999999876  6788888889999999999999999999975

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=86.16  E-value=3.3  Score=30.77  Aligned_cols=49  Identities=20%  Similarity=0.395  Sum_probs=34.3

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      .+.||++.|+...+.+.|+|+...+-    .+--+.++|+.+  ..++.++.|++
T Consensus        12 ~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~   60 (64)
T cd04937          12 RGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE   60 (64)
T ss_pred             cCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence            47899999999999999999974442    233477888633  34445555544

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=86.12  E-value=3.1  Score=31.16  Aligned_cols=50  Identities=22%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhc
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~K  141 (349)
                      +.+|++.|+...|++.|+||.-++.+.++.  -++++|+.+  ..++.++.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~--~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDS--EAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHH--HHHHHHHHHHH
Confidence            468999999999999999999988777643  478888743  34444454443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=86.02  E-value=13  Score=41.38  Aligned_cols=116  Identities=13%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd-----~~veQLiKQL~KLiDVikV~dlt~~~~V~RE  160 (349)
                      +.+++|++.||.+.|++.|+||+-++.+    ..-++++++..+     +.++.+.+++.++-.|   +       +.+.
T Consensus       332 ~~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i---~-------~~~~  397 (861)
T PRK08961        332 MWQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRV---K-------IIVP  397 (861)
T ss_pred             ccccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcE---E-------EeCC
Confidence            3478999999999999999999988532    234777776443     4566777777653222   1       3456


Q ss_pred             eeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          161 LMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       161 LaLIKV~~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      +++|-|--..     ..-+.++......+..++-.+...+-|-+.=+.+..+..++.|.+
T Consensus       398 va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~  457 (861)
T PRK08961        398 CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLHA  457 (861)
T ss_pred             eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHHH
Confidence            7888885432     233455655555677888887665566555566666666666654

>PLN02551 aspartokinase

Probab=85.67  E-value=13  Score=39.29  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--------HHHHHHHHHhcCeeeeEEEecCCchhhh
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVE  158 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--------~veQLiKQL~KLiDVikV~dlt~~~~V~  158 (349)
                      -++||.++||.+.|.+.|+||+-++.+  +  .-++++++.++.        .++++...|+++   ..|       .+.
T Consensus       377 ~~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~  442 (521)
T PLN02551        377 LGQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLL  442 (521)
T ss_pred             CCcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEe
Confidence            368999999999999999999999643  2  347788875542        233344444432   222       266


Q ss_pred             hheeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 018896          159 RELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       159 RELaLIKV~~~~~~----R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      +++++|-|--....    -+.++......+.+|.-++  ...+-|-+.=+.+..+..++.|..
T Consensus       443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~  505 (521)
T PLN02551        443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS  505 (521)
T ss_pred             CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence            78888888644222    2356666666777884444  444555555556667777777664

>PRK08526 threonine dehydratase; Provisional

Probab=85.35  E-value=4.5  Score=41.08  Aligned_cols=66  Identities=12%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC---c--EEEEEEe-CChHHHHHHHHHHhcC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---A--LFTIVVS-GTERVLRQVVEQLNKL  142 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~---g--iiTIVV~-gdd~~veQLiKQL~KL  142 (349)
                      -+...+.+.+-++||.|.+++.++.+.|-||..+.-......   +  .++++++ .+.+.+++|+..|.+.
T Consensus       324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~  395 (403)
T PRK08526        324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK  395 (403)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            367899999999999999999999999999999987653322   2  3666665 3566788888888553

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=85.21  E-value=2.8  Score=46.55  Aligned_cols=65  Identities=20%  Similarity=0.341  Sum_probs=47.2

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-C---ChHHHHHHHHHHh
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-G---TERVLRQVVEQLN  140 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-g---dd~~veQLiKQL~  140 (349)
                      ......|.|...|+||.|.+|+.+|.+.|++|.+-.+.--.+...  |-|.-. |   ++...+.|.++|.
T Consensus       780 s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~  850 (854)
T PRK01759        780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLL  850 (854)
T ss_pred             CCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence            356789999999999999999999999999999988876655543  444322 2   1222355655554

>PRK06545 prephenate dehydrogenase; Validated

Probab=85.05  E-value=0.63  Score=45.88  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             cceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ..-+.|.+.|.++||+|++|+++.+..|.||+.|.+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i  323 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRI  323 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeeccee
Confidence            356899999999999999999999999999998865

>PRK04374 PII uridylyl-transferase; Provisional

Probab=84.99  E-value=2.6  Score=46.98  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEe
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~  126 (349)
                      ..+.|+..|+||.+.+|+|+|+..|+||.+-.+-.+.+.-. =++.|.
T Consensus       691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~  738 (869)
T PRK04374        691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL  738 (869)
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEe
Confidence            38999999999999999999999999999988877655433 355554

>PRK14429 acylphosphatase; Provisional

Probab=84.75  E-value=2.8  Score=34.09  Aligned_cols=45  Identities=7%  Similarity=-0.012  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++  +.|-...+.++.|++.|++++|++|++.|+.
T Consensus        16 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~   62 (90)
T PRK14429         16 GCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV   62 (90)
T ss_pred             eeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence            45888999999876  6788889999999999999999999999985

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=84.74  E-value=2.7  Score=39.11  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHH---HHhcCeeeeEEEecCCchh
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE---QLNKLVNVIKVEDISNEPH  156 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiK---QL~KLiDVikV~dlt~~~~  156 (349)
                      -.|+++-.|+||..++|+......|.|+..--++.-++.--+.+-+.|+-+.+..|..   ++.+-.|..-+-.=++ ++
T Consensus         6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~m~rt~-~~   84 (176)
T COG2716           6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVVMKRTG-AH   84 (176)
T ss_pred             EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEEEeecC-CC
Confidence            3788999999999999999999999999876666544443344556666666655555   4444233322222222 22


Q ss_pred             h-hhheeeEEEeCCCCCHHH-HHHHHHhcCc
Q 018896          157 V-ERELMLIKLNGDTSTWPE-IMWLVDIFRA  185 (349)
Q Consensus       157 V-~RELaLIKV~~~~~~R~E-I~~la~iFrA  185 (349)
                      + ..-.+-++|......|+. +.++++.|.+
T Consensus        85 ~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~  115 (176)
T COG2716          85 PTPANPAPVWVYVDANDRPGIVEEFTALFDG  115 (176)
T ss_pred             ccCCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence            2 333444555555445543 2344444433

>PRK08639 threonine dehydratase; Validated

Probab=83.84  E-value=8.3  Score=39.08  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=55.4

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEecCC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISN  153 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~dlt~  153 (349)
                      -+...+++..-++||.|.+++......+-||..+.--....  .+.+.++++. +.+..+++..+|++.=  .+++++++
T Consensus       334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  411 (420)
T PRK08639        334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP  411 (420)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence            35689999999999999999994444444999886543222  2345555553 4467889999998854  35556676


Q ss_pred             chhhh
Q 018896          154 EPHVE  158 (349)
Q Consensus       154 ~~~V~  158 (349)
                      .+.++
T Consensus       412 ~~~~~  416 (420)
T PRK08639        412 NEPLY  416 (420)
T ss_pred             CHHHH
Confidence            66554

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=83.77  E-value=1.2  Score=35.70  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             eEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       315 ~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      .++.+.-.++||.|.+|+..|+.-||+|.+-.++
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~   35 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID   35 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe
Confidence            4788999999999999999999999999986553

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=83.63  E-value=3.4  Score=33.40  Aligned_cols=59  Identities=10%  Similarity=0.324  Sum_probs=45.0

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC---hHHHHHHHHHHhcCeeeeEE
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT---ERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd---d~~veQLiKQL~KLiDVikV  148 (349)
                      ..++.|.+.|+..+|.+.|+++|-+.-|   ..+ ++|+++.+   +..+++|++.|.+-.+.-.+
T Consensus        11 Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID~-~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911          11 MNREVGFGRKLLSILEDNGISYEHMPSG---IDD-ISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             ccchhcHHHHHHHHHHHcCCCEeeecCC---Ccc-EEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            4678999999999999999999976533   322 89999866   44678888888876554443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09977 putative Mg(2+) transport ATPase; Provisional

Probab=83.36  E-value=7.8  Score=36.71  Aligned_cols=67  Identities=10%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEE--EEeCChHHHHHHHHHHhcCeeeeEEE
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTI--VVSGTERVLRQVVEQLNKLVNVIKVE  149 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTI--VV~gdd~~veQLiKQL~KLiDVikV~  149 (349)
                      +.+.+..+++  -+..+...|.+.++.|.++.....+++..+++  .+. .+...+++..+|.++.+|.+|+
T Consensus       145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~  213 (215)
T PRK09977        145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS  213 (215)
T ss_pred             EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence            5555555444  47888999999999999999887666555444  444 4566888999999999999886

>PRK11899 prephenate dehydratase; Provisional

Probab=83.19  E-value=1.2  Score=43.32  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      .+..|-+.+.|+||.|..+-+.|+.||.|+-+|.
T Consensus       193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIe  226 (279)
T PRK11899        193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLE  226 (279)
T ss_pred             ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEE
Confidence            4677888889999999999999999999987763

>PRK14420 acylphosphatase; Provisional

Probab=83.07  E-value=3.2  Score=33.65  Aligned_cols=45  Identities=13%  Similarity=0.067  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|..++  |.|-...+.++.|++.|++++|++|++.|+.
T Consensus        16 GFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~   62 (91)
T PRK14420         16 GFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK   62 (91)
T ss_pred             CChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence            46888999999876  6677788889999999999999999999985

>PRK09181 aspartate kinase; Validated

Probab=82.98  E-value=21  Score=37.42  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEe
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN  167 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~  167 (349)
                      +++|.+.||.+.|.+.|+||+.+.-+  +  .-+++++..+...++++.+.|++...-..++       + +++++|-|-
T Consensus       341 ~~~g~~~~if~~l~~~~i~v~~i~ss--~--~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-------~-~~~a~VsvV  408 (475)
T PRK09181        341 GEDGYDLEILEILTRHKVSYISKATN--A--NTITHYLWGSLKTLKRVIAELEKRYPNAEVT-------V-RKVAIVSAI  408 (475)
T ss_pred             CcchHHHHHHHHHHHcCCeEEEEEec--C--cEEEEEEcCChHHHHHHHHHHHHhcCCceEE-------E-CCceEEEEe
Confidence            67999999999999999999976543  2  3477777755334677777777654322221       2 678888885


Q ss_pred             CCCCCH----HHHHHHHHhcCcEEEEecCC--EEEEEEeCChhHHHHHHHHhcc
Q 018896          168 GDTSTW----PEIMWLVDIFRAKVVDISEH--ALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       168 ~~~~~R----~EI~~la~iFrAkIVDvs~~--sltIEvTG~~~KIdafi~~L~~  215 (349)
                      -..-.+    +.++......+-+|.-++..  .+-|-+.=+.+..+..++.|..
T Consensus       409 G~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~  462 (475)
T PRK09181        409 GSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHE  462 (475)
T ss_pred             CCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHH
Confidence            543222    35666667777888555444  3344444445555555555543

>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3

Probab=82.81  E-value=2.5  Score=33.91  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHhc--CcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIF--RAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iF--rAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.+  .|.|-...+.++.+++.|++++|+.|++.|+.
T Consensus        18 gFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~   64 (91)
T PF00708_consen   18 GFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK   64 (91)
T ss_dssp             SHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence            3588899999988  57788889999999999999999999999986

6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....

>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria

Probab=82.66  E-value=6.9  Score=32.40  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHhccCcceeeEeeeecCCCc---E--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           91 GIINRIAGVFARRGYNIESLAVGLNVDKA---L--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        91 GVL~RItGLFsRRGyNIeSLtVg~Ted~g---i--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      .+.+|+..+..+.|.+|.|..+.+....+   +  +++.+.|+-..+.+++..|+.--..+-|++++
T Consensus        17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~   83 (110)
T PF10741_consen   17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLS   83 (110)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEE
Confidence            57889999999999999999999866544   2  66677899999999999999999999999887

It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.82  E-value=6.5  Score=29.72  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g  127 (349)
                      ..+.+|++.++...|++.++|++.++.+..+  .-+.+++..
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~   50 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE   50 (80)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence            5578999999999999999999999877333  246667663

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=81.70  E-value=21  Score=39.81  Aligned_cols=117  Identities=14%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEEe
Q 018896           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLN  167 (349)
Q Consensus        88 NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV~  167 (349)
                      +.||++.||.+.|.+.|+|++-++.+.++.  -+.+++.  ....+.+.+.|+++...       ..=.+++++++|-|-
T Consensus       329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~--~~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV  397 (810)
T PRK09466        329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYT--SEVADSALKLLDDAALP-------GELKLREGLALVALV  397 (810)
T ss_pred             CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEe--HHHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence            668999999999999999999987663322  3555554  22455666666665211       222367899999986


Q ss_pred             CCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          168 GDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       168 ~~~-----~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      -..     .--..++......+-+++..+...+-|-+.=+.+..+..++.|..
T Consensus       398 G~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~  450 (810)
T PRK09466        398 GAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ  450 (810)
T ss_pred             CCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence            543     223467777777899999999888888777777777777777775

>PRK14422 acylphosphatase; Provisional

Probab=81.29  E-value=4.3  Score=33.40  Aligned_cols=45  Identities=4%  Similarity=-0.104  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++  |.|-...+.++.|++-|+.++|++|++.|+.
T Consensus        20 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~   66 (93)
T PRK14422         20 GFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG   66 (93)
T ss_pred             CcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence            46889999999876  6788888899999999999999999999974

>PRK14445 acylphosphatase; Provisional

Probab=81.24  E-value=4.2  Score=33.18  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++  +.|=...+.++.|++.|++++|++|++.|+.
T Consensus        18 GFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~   64 (91)
T PRK14445         18 GFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER   64 (91)
T ss_pred             CChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence            46889999999876  6788889999999999999999999999974

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=81.16  E-value=4.2  Score=40.36  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcC
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KL  142 (349)
                      -..|+||++.|+...+++.|+||.+++    .....++++++.+  ..++.++.|++.
T Consensus       346 ~~~~~~g~~a~i~~~L~~~gIni~~i~----~s~~~is~vv~~~--d~~~av~~Lh~~  397 (401)
T TIGR00656       346 GMVGAPGVASEIFSALEEKNINILMIG----SSETNISFLVDEK--DAEKAVRKLHEV  397 (401)
T ss_pred             CcccCccHHHHHHHHHHHCCCcEEEEE----cCCCEEEEEEeHH--HHHHHHHHHHHH
Confidence            345899999999999999999999876    2233578888733  345555555543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK14436 acylphosphatase; Provisional

Probab=81.09  E-value=4.6  Score=33.12  Aligned_cols=45  Identities=9%  Similarity=0.037  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|..++  +.|-...+.++.|++-|++++|+.|++.|+.
T Consensus        18 GFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~   64 (91)
T PRK14436         18 GFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ   64 (91)
T ss_pred             CcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence            46888999999766  7788889999999999999999999999974

>TIGR02079 THD1 threonine dehydratase

Probab=80.77  E-value=14  Score=37.42  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC--CcEEEEEEeC-ChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSG-TERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~giiTIVV~g-dd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      +...+++.+-++||.|.+++.+....+-||..+.-.....  .+.+.++++. +.+.+++|.+.|++.=  .+++++++.
T Consensus       324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~  401 (409)
T TIGR02079       324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINEN  401 (409)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCC
Confidence            5689999999999999999994444544999777654322  2345555552 4566888999888754  356677776


Q ss_pred             hhhhh
Q 018896          155 PHVER  159 (349)
Q Consensus       155 ~~V~R  159 (349)
                      +.++.
T Consensus       402 ~~~~~  406 (409)
T TIGR02079       402 DILYN  406 (409)
T ss_pred             HHHHH
Confidence            65543

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK14428 acylphosphatase; Provisional

Probab=80.46  E-value=5.4  Score=33.39  Aligned_cols=45  Identities=11%  Similarity=0.061  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++  |.|-...+.++.|++.|+++.|++|++.|+.
T Consensus        22 GFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~   68 (97)
T PRK14428         22 GFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI   68 (97)
T ss_pred             cchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence            46889999999876  6788888889999999999999999999974

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=80.36  E-value=2  Score=46.98  Aligned_cols=50  Identities=20%  Similarity=0.334  Sum_probs=41.8

Q ss_pred             cccccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       294 ~~vl~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ..+++.+|+.    +....-...|.+...|++|+|+.|+-+++.-+.||.++..
T Consensus       610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~  659 (702)
T PRK11092        610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNT  659 (702)
T ss_pred             ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEE
Confidence            4689999972    2223457799999999999999999999999999999874

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=80.06  E-value=1.7  Score=40.18  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      .|+|-+.=+|+||++.+|..++++.|.||.+..||
T Consensus       148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~  182 (208)
T TIGR00719       148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETA  182 (208)
T ss_pred             ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEE
Confidence            47777777999999999999999999999999876

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=80.03  E-value=7.5  Score=29.45  Aligned_cols=48  Identities=15%  Similarity=0.188  Sum_probs=35.3

Q ss_pred             cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896           89 ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (349)
Q Consensus        89 kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~  140 (349)
                      +||++.|+...+++.|+|+..++.+.++  -.++++|+.  +..++.++.|+
T Consensus        14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~Lh   61 (66)
T cd04915          14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKALH   61 (66)
T ss_pred             cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHHH
Confidence            7899999999999999999988877653  247777763  33444444443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	349
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		8e-26
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		2e-24
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		3e-21

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+   +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VEREL L+K+        E   L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 3   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct: 63  KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
           +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLR 133
           +++ H +S  V ++ G+  ++A +FARRG+NI S+ VG +    L    I V G ++ + 
Sbjct: 26  QIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIE 85
Query: 134 QVVEQLNKLVNVIKVEDISNEPH--VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS 191
           Q+ +Q  KLV V+KV  I   P   VERE  LIK+  D     EI  LV+IFR K++D+S
Sbjct: 86  QIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQ-EIFQLVEIFRGKIIDVS 144
Query: 192 EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
                IE+TG   K+ A    L +  ++E+ARTG +A  R
Sbjct: 145 REGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	2e-78
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	2e-10
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	2e-77
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	1e-10
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	6e-77
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	1e-09
2f06_A	144	Conserved hypothetical protein; structural genomic	1e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2nyi_A	195	Unknown protein; protein structure initiative, PSI	5e-04

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  236 bits (604), Expect = 2e-78
 Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 63

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VERELML+K+        E+  L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYT 123

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNI 342
           G   H +S+L+ N  G L+ V G+ S RGYNI
Sbjct: 1   GHMRHIISLLMENEAGALSRVAGLFSARGYNI 32

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  234 bits (600), Expect = 2e-77
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 5/174 (2%)

Query: 71  PITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT 128
                +++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 129 ERVLRQVVEQLNKLVNVIKVEDISNEP--HVERELMLIKLNGDTSTWPEIMWLVDIFRAK 186
           ++ + Q+ +Q  KLV V+KV  I   P   VERE+ LIK+  D     EI  LV+IFR K
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 187 VVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPF 240
           ++D+S     IE+TG   K+ A    L +  ++E+ARTG +A+ R  + +   F
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEGEGF 193

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 306 DEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQ 343
                 +R H +SMLV+N PGV+  V  + +RRG+NI 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNIS 58

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  232 bits (595), Expect = 6e-77
 Identities = 59/158 (37%), Positives = 97/158 (61%), Gaps = 3/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           + R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 195 LTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRR 231
            T+++ G  GK+ A   ++     I E+AR+G + L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNI 342
           +    LS+L+ N  G L+ V G+ S+RGYNI
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNI 31

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Length = 144

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ--L 139
           +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +    
Sbjct: 9   LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFA 68

Query: 140 NKLVNVIKVEDISNEPHVERELM 162
             + +V+ +    N P    +++
Sbjct: 69  VNITDVVGIS-CPNVPGALAKVL 90

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQ 138
            I +   D++G+ N+I GV ++   NI ++ +            I V  T++ L  ++++
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDK-LTTLMDK 65

Query: 139 LNKLVNVIKVEDISNEPH 156
           L K+  V  VE +SN  H
Sbjct: 66  LRKVQGVFTVERLSNLEH 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 133 RQVVEQLNKLVNVIKVEDISNEPHVE---RELMLIKLNGDTSTWPEIM---------WLV 180
           + V +    +++  +++ I            L    L+       + +         +L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 181 DIFRAKVVDISEHALTIEVTGDP---GKMVAVQRNLS--------KFGIKELAR------ 223
              + +    S          D       V  + N+S        +  + EL        
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 224 -----TGK-----IALRREKLGDTAP---FW-NFSAASYPDLEEKKRTGIFIPETNQSLN 269
                +GK           K+        FW N    + P+          + E  Q L 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---------VLEMLQKLL 206

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLV 321
              + + +SR          D S+N  L  H            + +   +LV
Sbjct: 207 YQIDPNWTSRS---------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL----NVDKALFT--IVVSGTERV 131
           + + + V   D  GI+  +  V A++G NI  L             LF     V+    +
Sbjct: 92  REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPL 151

Query: 132 LRQVVEQLNKLVNVIKVEDISNEPHVERE 160
            ++VV  L+++     V DI  E  VE E
Sbjct: 152 YQEVVTALSRVEEEFGV-DIDLEEVVEGE 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	99.28
2f06_A	144	Conserved hypothetical protein; structural genomic	99.2
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.89
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.85
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.59
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.95
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.52
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.51
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.47
2nyi_A	195	Unknown protein; protein structure initiative, PSI	97.44
1u8s_A	192	Glycine cleavage system transcriptional repressor,	97.27
2nyi_A	195	Unknown protein; protein structure initiative, PSI	97.17
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.16
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.12
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.99
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.94
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	96.86
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.84
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.79
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.78
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.72
2f06_A	144	Conserved hypothetical protein; structural genomic	96.71
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.64
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.58
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.33
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.84
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	95.58
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	95.44
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	95.25
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.22
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.89
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	94.71
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	94.22
3luy_A	329	Probable chorismate mutase; structural genomics, A	94.21
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	92.44
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	90.82
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	90.29
2qsw_A	100	Methionine import ATP-binding protein METN 2; ABC	89.8
3ced_A	98	Methionine import ATP-binding protein METN 2; ABC	89.4
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	88.78
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	88.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	88.39
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	87.98
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	87.79
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	87.72
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	87.63
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	87.25
3dhx_A	106	Methionine import ATP-binding protein METN; methio	86.66
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	85.84
3trg_A	98	Acylphosphatase; fatty acid and phospholipid metab	85.02
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	80.75
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	80.39

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=7.7e-53  Score=381.79  Aligned_cols=159  Identities=38%  Similarity=0.635  Sum_probs=153.1

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCC-
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN-  153 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~-  153 (349)
                      +|+|+|+|+++|+||+|+||+++|++|||||+||++++++++++  |||+|+++++.++||.+||+||+||++|.++++ 
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~  106 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL  106 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            57999999999999999999999999999999999999999985  888999999999999999999999999999999 


Q ss_pred             -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896          154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (349)
Q Consensus       154 -~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg  232 (349)
                       .+.|+||||||||+++++ |.||++++++|||||||+++++++||+||+++||++|+++|+||||+|++|||++||.||
T Consensus       107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg  185 (193)
T 2fgc_A          107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW  185 (193)
T ss_dssp             GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence             999999999999999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 018896          233 KLGD  236 (349)
Q Consensus       233 ~~~~  236 (349)
                      +...
T Consensus       186 ~~~~  189 (193)
T 2fgc_A          186 NVKE  189 (193)
T ss_dssp             CC--
T ss_pred             Cccc
Confidence            7543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=4.4e-52  Score=367.91  Aligned_cols=157  Identities=41%  Similarity=0.641  Sum_probs=153.2

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      |+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+|+++++.++||.+||+||+||++|.++++.+
T Consensus         3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~~   82 (165)
T 2pc6_A            3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEG   82 (165)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred             eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence            5899999999999999999999999999999999999998874  89999999999999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 018896          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (349)
Q Consensus       156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~~  234 (349)
                      +|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||++
T Consensus        83 ~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~  161 (165)
T 2pc6_A           83 YVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER  161 (165)
T ss_dssp             EEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred             eeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999975

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.6e-51  Score=363.61  Aligned_cols=158  Identities=37%  Similarity=0.653  Sum_probs=153.3

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      ||+|+|+|+++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||++||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999998864  8999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 018896          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK  233 (349)
Q Consensus       155 ~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAL~Rg~  233 (349)
                      ++|+||||||||++++++|.||++++++|||+|||+++++++||+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999997


Q ss_pred             C
Q 018896          234 L  234 (349)
Q Consensus       234 ~  234 (349)
                      +
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=99.28  E-value=1.3e-12  Score=118.55  Aligned_cols=48  Identities=40%  Similarity=0.636  Sum_probs=35.5

Q ss_pred             ccccccccccCCCCccceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       297 l~~~~~~~~~~~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      .|+|||-+.+.    .++|+|+++|+|+||||+||+|||++|||||+||+|+
T Consensus        16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~   63 (193)
T 2fgc_A           16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVG   63 (193)
T ss_dssp             ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence            58999988664    4699999999999999999999999999999999986

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=99.20  E-value=6.6e-10  Score=92.55  Aligned_cols=125  Identities=14%  Similarity=0.223  Sum_probs=90.7

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      .||+|+|+++++|+||+|+||+++|+++|+||+++++..+.+++.+++++. +.+...+++++..-.+...         
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-d~~~a~~~L~~~G~~v~~~---------   72 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS-DPDKAYKALKDNHFAVNIT---------   72 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-CHHHHHHHHHHTTCCEEEE---------
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-CHHHHHHHHHHcCCeEeee---------
Confidence            588999999999999999999999999999999999998888887667654 5555666666543222111         


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 018896          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI  218 (349)
Q Consensus       156 ~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVD---v-s~~--sltIEvTG~~~KIdafi~~L~~fGI  218 (349)
                          .+.-+.++-.|..-+++.++....+.+|..   . ++.  +++++.    +..+..++.|+.-|.
T Consensus        73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                345556777777788888888888888843   2 333  344555    356666777776664

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.89  E-value=1.4e-08  Score=76.58  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecCCch
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt~~~  155 (349)
                      ....|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++.+|.+|..+..-+
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~   82 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE   82 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            4578999999999999999999999999999999987655233566555 45678999999999999999998776543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.85  E-value=2.6e-08  Score=86.72  Aligned_cols=112  Identities=13%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCee----eeEEEecCCc
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVN----VIKVEDISNE  154 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiD----VikV~dlt~~  154 (349)
                      +++|+|+..|+||++++|+++|+++|+||..+....+.+.-.+++++..++...++|.++|.++.+    .+.+...+..
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~   85 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSPH   85 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            689999999999999999999999999999999887655445788887666678889988876543    4445544433


Q ss_pred             hhhhhheeeEEEeCCCCCHH----HHHHHHHhcCcEEEEec
Q 018896          155 PHVERELMLIKLNGDTSTWP----EIMWLVDIFRAKVVDIS  191 (349)
Q Consensus       155 ~~V~RELaLIKV~~~~~~R~----EI~~la~iFrAkIVDvs  191 (349)
                      + -.++....+|.+....|+    +|.++...+++.|.++.
T Consensus        86 ~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~  125 (192)
T 1u8s_A           86 D-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS  125 (192)
T ss_dssp             C-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             C-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhh
Confidence            3 244444444443322344    55566667788887654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.59  E-value=5.9e-08  Score=74.34  Aligned_cols=70  Identities=20%  Similarity=0.310  Sum_probs=56.5

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHHhcCeeeeE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVNVIK  147 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQL~KLiDVik  147 (349)
                      +.+.|++...|+||+|++|+++++++|+||.++......+...+++.++. +...+++|.++|.++-+...
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~   74 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   74 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999876633346666553 33568999999988765533

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.95  E-value=1.9e-05  Score=73.39  Aligned_cols=79  Identities=18%  Similarity=0.291  Sum_probs=61.9

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC----C-CcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----D-KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te----d-~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++....    + ...++|-++..  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            456999999999999999999999999999999998765    3 23466556544  8999999999999999999887


Q ss_pred             Cchhhh
Q 018896          153 NEPHVE  158 (349)
Q Consensus       153 ~~~~V~  158 (349)
                      .-+.++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            655554

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.52  E-value=0.0011  Score=54.40  Aligned_cols=69  Identities=12%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~-gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      .|.|...|++|+|+.|+.+++..++||.++.+.+.   |.+.+.+. .+...+..|..++.++.++..+....
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~   71 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP   71 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence            47899999999999999999999999999999655   55666665 45677999999999999999887654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.51  E-value=0.00054  Score=58.74  Aligned_cols=129  Identities=15%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             EEEEEEE-EcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCc
Q 018896           79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE  154 (349)
Q Consensus        79 ~htISIl-VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~  154 (349)
                      ...|+|+ +.|+||.+.+|...|++.|+||+.++.+.+.+ |  .++++|+.++ ....++++++.+-...-.|      
T Consensus        25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------   97 (167)
T 2re1_A           25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------   97 (167)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE------
T ss_pred             EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE------
Confidence            3467777 89999999999999999999999999876654 4  4888887433 2233444443222232121      


Q ss_pred             hhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 018896          155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (349)
Q Consensus       155 ~~V~RELaLIKV~~~~-----~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~-~fG  217 (349)
                       .+.+.++++-|-...     .--..+++....++..|  +..+..++.+=+  +.+..+..++.|. .|+
T Consensus        98 -~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv--~~~d~~~av~~Lh~~f~  165 (167)
T 2re1_A           98 -DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI--DEKYMELATRVLHKAFN  165 (167)
T ss_dssp             -EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             -EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE--eHHHHHHHHHHHHHHhc
Confidence             245678888886532     33457888877777777  444666666555  3344555555554 354

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.47  E-value=0.00047  Score=67.72  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=62.4

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.|-+++....-+.++++|+++..|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            4568899999999999999999999999999999985555667777886644667899999999999998754

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=97.44  E-value=0.002  Score=56.68  Aligned_cols=116  Identities=12%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh----HHHHHHHHHHhcCeeeeEEEe-c
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE----RVLRQVVEQLNKLVNVIKVED-I  151 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd----~~veQLiKQL~KLiDVikV~d-l  151 (349)
                      .++++|.|...|+||++++|++.++++|.||.........+.=.|++.+..++    ...++|.+.|.++..=..+.. +
T Consensus         3 ~~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~   82 (195)
T 2nyi_A            3 TQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSV   82 (195)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred             ceEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence            36789999999999999999999999999999998886443212566665322    237788888876553211110 0


Q ss_pred             CCc-hhhhhheeeEEEeCC--CCCHHHHHHHHHhcCcEEEEecC
Q 018896          152 SNE-PHVERELMLIKLNGD--TSTWPEIMWLVDIFRAKVVDISE  192 (349)
Q Consensus       152 t~~-~~V~RELaLIKV~~~--~~~R~EI~~la~iFrAkIVDvs~  192 (349)
                      ... ..-..+...+.|.++  +.--.+|-++.-.+++.|.++..
T Consensus        83 ~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~  126 (195)
T 2nyi_A           83 AERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELET  126 (195)
T ss_dssp             ----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEcee
Confidence            000 011234456666653  23334556666667777777644

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=97.27  E-value=0.00099  Score=57.75  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC------CCcE--EEEEEeC-ChHHHHHHHHHHhcCe
Q 018896           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV------DKAL--FTIVVSG-TERVLRQVVEQLNKLV  143 (349)
Q Consensus        74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te------d~gi--iTIVV~g-dd~~veQLiKQL~KLi  143 (349)
                      ......+.|.+...|+||++++|+++|+++|+||+.+......      ..+.  +++.+.. +....++|.++|.++.
T Consensus        88 ~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A           88 QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALC  166 (192)
T ss_dssp             CCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3445778999999999999999999999999999998877443      2344  5555553 3334677777776543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=97.17  E-value=0.0011  Score=58.24  Aligned_cols=66  Identities=23%  Similarity=0.254  Sum_probs=49.6

Q ss_pred             cCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC----CCcE--EEEEEeC-ChHHHHHHHHHHhc
Q 018896           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSG-TERVLRQVVEQLNK  141 (349)
Q Consensus        75 ~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te----d~gi--iTIVV~g-dd~~veQLiKQL~K  141 (349)
                      ....++.|.|...|+||++.+|+++|+++|.||..+......    ..++  |++.+.. +... ++|.+.|.+
T Consensus        89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~  161 (195)
T 2nyi_A           89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSR  161 (195)
T ss_dssp             TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHH
Confidence            345779999999999999999999999999999999887443    3344  5555543 2333 667666653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.16  E-value=0.0011  Score=66.12  Aligned_cols=73  Identities=11%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             ccCceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC---CcEEEEEEe-CChHHHHHHHHHHhcCeeee
Q 018896           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVS-GTERVLRQVVEQLNKLVNVI  146 (349)
Q Consensus        74 ~~~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted---~giiTIVV~-gdd~~veQLiKQL~KLiDVi  146 (349)
                      .+-..+|.|.+.+.|+||||.+|+++|++.|++|+|+...+..+   ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            44468899999999999999999999999999999998765431   223666666 46888999999999986654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.12  E-value=0.00029  Score=53.64  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=32.7

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ++.+|++...|+||+|++|+++++.+|.||.++..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~   38 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQ   38 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEe
Confidence            56899999999999999999999999999999864

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.99  E-value=0.0031  Score=62.70  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=62.3

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .|.|.+.=+|.||+|.+|+.+|++.|+||+.+.-.-..+-++.-+=+++....-+.++++|+++..|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            5789999999999999999999999999999997766676776666664356678999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.94  E-value=0.0011  Score=66.72  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ..|.|-+...|+||++.+|+.++.+.|+||..+.++..+..  +++.|.++..  .-+.+.++|.++.+|.+|..+
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            35899999999999999999999999999999999987654  4577878642  234456666777777766644

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=96.86  E-value=0.00088  Score=50.06  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      ...|.+.+.|+||+|+.|+++|+..|.||.++.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~   38 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVL   38 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEE
Confidence            5678999999999999999999999999998865

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.84  E-value=0.0026  Score=60.70  Aligned_cols=65  Identities=11%  Similarity=0.114  Sum_probs=50.9

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHh
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN  140 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~  140 (349)
                      .|++++|++.-.|+||+.++||+.++++|.||..++.......++  |++.++.++  ...++|.+.++
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~   87 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT   87 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence            578899999999999999999999999999999999886555665  666666432  24556655543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.79  E-value=0.0025  Score=60.51  Aligned_cols=65  Identities=12%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCC----hHHHHHHHHHHh
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLN  140 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gd----d~~veQLiKQL~  140 (349)
                      .|++++|++.-.|+||+.++||+.++++|.||..+........++  |++.++.+    ...+++|.+.++
T Consensus         7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~   77 (292)
T 3lou_A            7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE   77 (292)
T ss_dssp             -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence            456789999999999999999999999999999999875455565  56666543    233555655543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.78  E-value=0.0026  Score=60.13  Aligned_cols=63  Identities=3%  Similarity=-0.074  Sum_probs=47.7

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh-HHHHHHHHHH
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE-RVLRQVVEQL  139 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd-~~veQLiKQL  139 (349)
                      |.+++|++.-.|+||+.++||+.|+.+|.||..++.......++  |++.++.++ ...++|.+.+
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f   71 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL   71 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence            56689999999999999999999999999999999875455565  666666432 2345555444

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.72  E-value=0.003  Score=59.71  Aligned_cols=64  Identities=13%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHHh
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN  140 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd--~~veQLiKQL~  140 (349)
                      +.+++|++.-.|+||+.++||+.++++|.||..++...+...++  |++.++.++  ..+++|.+.++
T Consensus         4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~   71 (288)
T 3obi_A            4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG   71 (288)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence            34689999999999999999999999999999999875555665  566555322  34566665553

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.71  E-value=0.0041  Score=51.33  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeee
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL  114 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~  114 (349)
                      ..+.+-+.|+||++++|+.++++.|+||+.+....
T Consensus        73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~  107 (144)
T 2f06_A           73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA  107 (144)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence            36777899999999999999999999998876654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.64  E-value=0.018  Score=54.85  Aligned_cols=140  Identities=15%  Similarity=0.189  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChH--HHHHHHHHHhcCe---e-eeEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKV  148 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~--~veQLiKQL~KLi---D-VikV  148 (349)
                      .++..|++.-.||||+.++|++.++++|.||..+.....  .+.  |++.++.++.  ..++|.+.|..+-   . -+++
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   87 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSI   87 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEE
Confidence            357899999999999999999999999999999997653  355  5566665543  3466766665442   1 2444


Q ss_pred             EecCCchhhhh-heeeEEEeCC---CCCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCChh---HHH-HHHHHhc
Q 018896          149 EDISNEPHVER-ELMLIKLNGD---TSTWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDPG---KMV-AVQRNLS  214 (349)
Q Consensus       149 ~dlt~~~~V~R-ELaLIKV~~~---~~~R~EI~~la~iFrAkIVDvs~~s------ltIEvTG~~~---KId-afi~~L~  214 (349)
                      ...+......+ ...++-+-..   ++.-.+|..+...++.+|-++..-+      +-+.+.+++.   .+. ++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~  167 (415)
T 3p96_A           88 ERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSS  167 (415)
T ss_dssp             EECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             EECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence            44444322222 2333434332   2334456666666779888775544      3355556543   333 3334445


Q ss_pred             cCCc
Q 018896          215 KFGI  218 (349)
Q Consensus       215 ~fGI  218 (349)
                      .+++
T Consensus       168 ~~~v  171 (415)
T 3p96_A          168 EEHV  171 (415)
T ss_dssp             HHTC
T ss_pred             hcCc
Confidence            5664

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.58  E-value=0.0044  Score=58.62  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=47.2

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHH
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL  139 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL  139 (349)
                      ++++|++.-.|+||+.++|++.++++|.||..++...+...++  |++.++.+....++|.+.+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f   69 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF   69 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999876566666  6666664432344555444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.33  E-value=0.04  Score=47.68  Aligned_cols=127  Identities=20%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             EEEEE-EEcCcccHHHHHHHHHhccCcceeeEeeeecC--CC-cEEEEEEeCChHHHHHHHHHHhcC---eeeeEEEecC
Q 018896           80 HTISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DK-ALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDIS  152 (349)
Q Consensus        80 htISI-lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te--d~-giiTIVV~gdd~~veQLiKQL~KL---iDVikV~dlt  152 (349)
                      -.|+| .+.|+||.+.+|...|++.|+||+.++.+...  +. ..+++++..++  .++..+.|+++   .....+    
T Consensus        16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v----   89 (178)
T 2dtj_A           16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV----   89 (178)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE----
T ss_pred             EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE----
Confidence            45666 57999999999999999999999999876432  22 23677776332  23333444432   222222    


Q ss_pred             CchhhhhheeeEEEeCCC-CCHH----HHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896          153 NEPHVERELMLIKLNGDT-STWP----EIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (349)
Q Consensus       153 ~~~~V~RELaLIKV~~~~-~~R~----EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fG  217 (349)
                         .+.+++++|-|-... ..++    .+++.....+-+|  +..++.++.+=+  +.+..+..++.|.. |+
T Consensus        90 ---~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A           90 ---LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  157 (178)
T ss_dssp             ---EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred             ---EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence               245788888886532 2232    4445444445555  444555555544  66667777776664 54

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.84  E-value=0.04  Score=52.22  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=56.7

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHHhcCeeeeEE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i-iTIVV~g--dd~~veQLiKQL~KLiDVikV  148 (349)
                      -.+..|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... + + |-|-++|  ++..+++.++.|++...-+++
T Consensus       198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            356788888899999999999999999999999999988764 3 2 4444554  567788899998887654443

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=95.58  E-value=0.034  Score=47.38  Aligned_cols=120  Identities=15%  Similarity=0.196  Sum_probs=71.7

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhhe
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~REL  161 (349)
                      +.|+||.+.||.+.|++.|+||+.++.+.+. +.|  -++++|..++ +...++++++.+-... .|.       +++.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987653 344  4888887433 2233333333222222 333       45677


Q ss_pred             eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       162 aLIKV~~~~-----~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      +++-|-...     .--+.+++.....+-+|  +..++.++.  +.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is--~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRIS--VIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEE--EEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEE--EEEeHHHHHHHHHHHHH
Confidence            777775432     12234555555545555  444444333  33345556666666654

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=95.44  E-value=0.037  Score=52.04  Aligned_cols=70  Identities=13%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             eEEEEEEEE---cCcccHHHHHHHHHhccCcceeeEeeeecCCC-c-E---EEEEEeCChHHHHHHHHHHhcCeeeeEE
Q 018896           78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        78 ~~htISIlV---eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g-i---iTIVV~gdd~~veQLiKQL~KLiDVikV  148 (349)
                      .+..|.+.+   .|+||.|.++.+.|+.||+|+..|.--|+... + +   +.+. +-++..+.+.++.|++...-+++
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence            355777788   89999999999999999999999999888764 2 2   3444 55677788899988877654443

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=95.25  E-value=0.082  Score=50.81  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=53.3

Q ss_pred             CceEEEEEEEE-cCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCee
Q 018896           76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (349)
Q Consensus        76 ~m~~htISIlV-eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiD  144 (349)
                      ...+..|.+.+ +|+||.|.++.+.|+.||+|+..|.--|+...-  + |-|-+.|  ++..+.+.++.|++...
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~  272 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP  272 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence            34577888888 499999999999999999999999988876542  3 5555554  56678888888876543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.22  E-value=0.072  Score=46.63  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecC-CCcE--EEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~gi--iTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~RE  160 (349)
                      -+.|+||.+.||.+.|++.|+||+.++...++ +.+.  ++++++.++ +...++++++.+-...-+|.       +.+.
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence            47899999999999999999999999876555 2454  888887554 33334444433222222222       3456


Q ss_pred             eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896          161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (349)
Q Consensus       161 LaLIKV~~~~-~~----R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fG  217 (349)
                      +++|-|--.. ..    -+.+++.....+-+|.-++...+.|-+.=+.+..+..++.|.. |+
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH~~f~  158 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFG  158 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHHHHc
Confidence            7777764321 12    2244555544455554443333333344445555555555543 44

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.89  E-value=0.15  Score=49.82  Aligned_cols=130  Identities=16%  Similarity=0.244  Sum_probs=81.1

Q ss_pred             EEEEEEE-EcCcccHHHHHHHHHhccCcceeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCC
Q 018896           79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISN  153 (349)
Q Consensus        79 ~htISIl-VeNkPGVL~RItGLFsRRGyNIeSLtVg~Te-d~g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~  153 (349)
                      ...|+|+ +.|+||.+.||...|++.|+||+.++...++ +.+  .++++|+.++ ....++++++.+-+..-.|.    
T Consensus       264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~----  339 (421)
T 3ab4_A          264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVL----  339 (421)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEE----
T ss_pred             EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEE----
Confidence            3467777 7999999999999999999999999763332 134  4888888533 33445555554333322222    


Q ss_pred             chhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 018896          154 EPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (349)
Q Consensus       154 ~~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fG  217 (349)
                         +++.+++|-|-..     +.--+.+++.....+-+|  +..++.++.+=+  +.+..+..++.|.. |.
T Consensus       340 ---~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          340 ---YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  406 (421)
T ss_dssp             ---EECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             ---EeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence               4567888887543     223346666655555555  555666555544  34556666666653 55

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=94.71  E-value=0.072  Score=45.03  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEecCCchhhhhheeeEEE
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL  166 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLIKV  166 (349)
                      .++||++.||.+.|++.|+||+-++.++    ..++++++..+ .++++++.|.+.   -.|.       +.+.+++|-|
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vsv   93 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIICI   93 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEEE
Confidence            4789999999999999999999998543    36888887555 577888888773   1222       3457788886


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 018896          167 NGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (349)
Q Consensus       167 ~~~-----~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~  214 (349)
                      --.     +..-+.+++...  +-.|.-++  .....|.+.=+.+..+..++.|.
T Consensus        94 vG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh  146 (157)
T 3mah_A           94 VGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS  146 (157)
T ss_dssp             EC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred             ECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence            533     222334444444  44443333  23333444445555565665554

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=94.22  E-value=0.094  Score=52.73  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEE---eCChHHHHHHHHHHhcC-eeeeEE
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV---SGTERVLRQVVEQLNKL-VNVIKV  148 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV---~gdd~~veQLiKQL~KL-iDVikV  148 (349)
                      ...+..|.+.+.|+||.|.++.+.|+.+|+|+..|.--|+... +-..+-|   +.++..+.++++.|.+. ..-++|
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki  108 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE  108 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence            3456778888899999999999999999999999998887654 3222222   33455688888988888 554444

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=94.21  E-value=0.19  Score=48.60  Aligned_cols=70  Identities=14%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             EEEEEEEEc--CcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHHhcCeeeeEE
Q 018896           79 RHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        79 ~htISIlVe--NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g--dd~~veQLiKQL~KLiDVikV  148 (349)
                      +.++.+++.  |+||.|.++.+.|++||+|+..|.--|+...-  + |=|-++|  ++..+.+.++.|++...-+++
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            344444544  79999999999999999999999988887642  2 4455655  456788888888777544433

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=92.44  E-value=0.15  Score=45.97  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-c--EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhhhhh
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-g--iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V~RE  160 (349)
                      -+.|+||++.||-+.|++.|+||+-++.+.++.. +  .++.++..++ .....+.+++.+-+...+|.       ++..
T Consensus        42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~-------~~~~  114 (200)
T 4go7_X           42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH  114 (200)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEE-------EECC
T ss_pred             cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEE-------EecC
Confidence            4789999999999999999999999988766532 2  3677776433 33444444443333333333       4455


Q ss_pred             eeeEEEeCCC-CC----HHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896          161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FGI  218 (349)
Q Consensus       161 LaLIKV~~~~-~~----R~EI~~la~iFrAkI--VDvs~~sltIEvTG~~~KIdafi~~L~~-fGI  218 (349)
                      ++.|-|--.. ..    -+.+++....-+-+|  +.-++-.+.+=+  +.++.+..++.|.. |++
T Consensus       115 iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          115 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred             eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence            6666553221 12    224444444333344  554555444443  56666666666664 664

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=90.82  E-value=0.57  Score=37.04  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=47.3

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 018896          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (349)
Q Consensus       163 LIKV~~~~--~~R~EI~~la~iFrAkI-------VDv---s~~sltIEvTG~~~KIdafi~~L~~fGI-lEia  222 (349)
                      ++|+....  ...+-|.++++.|+..+       -.+   .-..+++|+.|++++++++++.|+..|+ +|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            78887654  45567999999986543       332   3378999999999999999999999996 5765

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=90.29  E-value=1.6  Score=35.02  Aligned_cols=71  Identities=10%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCeeee
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI  146 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiDVi  146 (349)
                      +.+...+.|.|+|+--+=.+|=.++.+-|-.|..=.==|..+.  ++|.++++++.+.+..|...|.+|..|-
T Consensus         4 ~~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            4 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             CCEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             ceeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            4567899999999998888999999999999975433354444  4699999999999999999999998774

>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13

Probab=89.80  E-value=0.55  Score=37.05  Aligned_cols=60  Identities=20%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 018896          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (349)
Q Consensus       163 LIKV~~~~--~~R~EI~~la~iFrAkI-------VDv---s~~sltIEvTG~~~KIdafi~~L~~fGI-lEia  222 (349)
                      ++|+....  ...+-|.++++.|+..+       -.+   .-..|++|+.|++++++++++.|+..|+ +|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (100)
T 2qsw_A           25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   97 (100)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence            77777643  45667999999886543       332   3478999999999999999999999996 5664

>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13

Probab=89.40  E-value=0.55  Score=37.39  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 018896          163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR  223 (349)
Q Consensus       163 LIKV~~~~--~~R~EI~~la~iFrA-------kIVDv---s~~sltIEvTG-~~~KIdafi~~L~~fGI-lEiaR  223 (349)
                      ++|+....  ...+-|.++++.|+.       +|-.+   .-..+++|+.| ++++++++++.|+..|+ +|...
T Consensus        22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg   96 (98)
T 3ced_A           22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR   96 (98)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            78887653  455668999998754       44443   34789999999 89999999999999996 67763

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=88.76  E-value=0.92  Score=38.52  Aligned_cols=46  Identities=15%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             EEEEEEEEcC---cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896           79 RHTISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (349)
Q Consensus        79 ~htISIlVeN---kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd  128 (349)
                      ...+++.-.+   +||++.|+...|++.|+||+.++   + ....++++++.+
T Consensus       103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is---t-se~~is~vv~~~  151 (167)
T 2re1_A          103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS---T-SEIKVSVLIDEK  151 (167)
T ss_dssp             EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE---E-CSSEEEEEEEGG
T ss_pred             EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE---c-ccCEEEEEEeHH
Confidence            3456666655   99999999999999999999986   2 233577888743

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=88.39  E-value=1.3  Score=41.88  Aligned_cols=67  Identities=19%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             cCceEEEEEEEEcC-cccHHHHHHHHHhccCcceeeEeeeecCCCcE-EEEEEeCChHHHHHHHHHHhcC
Q 018896           75 SKVKRHTISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTERVLRQVVEQLNKL  142 (349)
Q Consensus        75 ~~m~~htISIlVeN-kPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi-iTIVV~gdd~~veQLiKQL~KL  142 (349)
                      ++..++.+.++..+ .||.+.+|+.+++.+|.||+.+.--. +.+.. +.+.+..++....++..++.++
T Consensus        97 ~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~-~~~~~~~~~~v~~~~~~~~~l~~~l~~l  165 (415)
T 3p96_A           97 REPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS-DYPVIGLELRVSVPPGADEALRTALNRV  165 (415)
T ss_dssp             CCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE-SSSSEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc-CCCceEEEEEeeCCCCCHHHHHHHHHHH
Confidence            45567899999999 99999999999999999999887543 33433 5555554444455555555543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=87.98  E-value=1.3  Score=45.45  Aligned_cols=127  Identities=10%  Similarity=0.147  Sum_probs=82.7

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecCC--Cc----EEEEEEeCCh-HHHHHHHHHHhcCeeeeEEEecCCchhh
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KA----LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted--~g----iiTIVV~gdd-~~veQLiKQL~KLiDVikV~dlt~~~~V  157 (349)
                      -+.|+||+..||.+.+++.|+|++-+.....+.  .+    -+++++..++ ....++++++.+-++-.+|.       +
T Consensus       451 ~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~~~~~v~-------~  523 (600)
T 3l76_A          451 HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLDAAIV-------V  523 (600)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTSTTCEEE-------E
T ss_pred             cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhcCCceEE-------E
Confidence            578999999999999999999999999887663  13    4778886332 33444444444433322333       4


Q ss_pred             hhheeeEEEeC-----CCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896          158 ERELMLIKLNG-----DTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI  218 (349)
Q Consensus       158 ~RELaLIKV~~-----~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fGI  218 (349)
                      +..+++|-|--     .+..-+.+++....-+-+|.=++..-+.|-+.=+.+..+..++.|.. |++
T Consensus       524 ~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~l  590 (600)
T 3l76_A          524 NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFNL  590 (600)
T ss_dssp             ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTT
T ss_pred             eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhCC
Confidence            55677766632     23344466666666666666665555666666667777777777754 764

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=87.79  E-value=1.5  Score=37.08  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             EEEEEEcC---cccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896           81 TISVFVGD---ESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (349)
Q Consensus        81 tISIlVeN---kPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd  128 (349)
                      .+++.-.+   +||++.|+...+++.|+||.-++  .+ + -.+.++|+.+
T Consensus        97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e-~~is~vv~~~  143 (167)
T 2dt9_A           97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-E-VRISVIIPAE  143 (167)
T ss_dssp             EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEGG
T ss_pred             EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEeHH
Confidence            36666655   99999999999999999998776  22 2 2677888744

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=87.72  E-value=0.96  Score=38.96  Aligned_cols=54  Identities=13%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             EEEEEEc---CcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896           81 TISVFVG---DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (349)
Q Consensus        81 tISIlVe---NkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~  140 (349)
                      .|++.-.   ++||++.|+...|++.|+||+-++  .++  -.+.++|+.+  ..++.++.|.
T Consensus        97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~~--d~~~Av~~Lh  153 (178)
T 2dtj_A           97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIRED--DLDAAARALH  153 (178)
T ss_dssp             EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGG--GHHHHHHHHH
T ss_pred             EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHH--HHHHHHHHHH
Confidence            4555544   899999999999999999999986  222  3467777533  2444444444

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=87.63  E-value=3.1  Score=42.76  Aligned_cols=134  Identities=13%  Similarity=0.178  Sum_probs=84.9

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC-cEEEEEEeCCh-HHHHHHHHHHhcCe-------eeeE
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTE-RVLRQVVEQLNKLV-------NVIK  147 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~-giiTIVV~gdd-~~veQLiKQL~KLi-------DVik  147 (349)
                      +..-+|. -+.++||.+.||.+.|++.|+||+-++.+..+.. .-+++++..++ ....++++++.+-+       ...+
T Consensus       270 ~~~i~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~  348 (600)
T 3l76_A          270 QAKVALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAE  348 (600)
T ss_dssp             CEEEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSE
T ss_pred             EEEEEEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcce
Confidence            3333444 5678999999999999999999999987765543 23788887443 33344444443322       2223


Q ss_pred             EEecCCchhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCc
Q 018896          148 VEDISNEPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGI  218 (349)
Q Consensus       148 V~dlt~~~~V~RELaLIKV~~~-----~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~-fGI  218 (349)
                      |.       +++.+++|-|--.     +..-..+++.....+.+|.-++....-|.+.=+.+..+..++.|.. |..
T Consensus       349 v~-------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          349 II-------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGV  418 (600)
T ss_dssp             EE-------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred             eE-------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcc
Confidence            32       5677888888533     3445577777777777765554444444455555666677777765 554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=87.25  E-value=3.3  Score=41.27  Aligned_cols=117  Identities=14%  Similarity=0.232  Sum_probs=75.7

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChH--HHHHHHHHHhcCeeeeEEEecCCchhhhhheeeE
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~--~veQLiKQL~KLiDVikV~dlt~~~~V~RELaLI  164 (349)
                      .++||.+.||...|++.|+||+.++.+    ..-++++++.++.  .++++.+.|.+..+.-+|.       +.+.+++|
T Consensus       309 ~~~~g~~~~if~~l~~~~i~vd~i~~~----~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V  377 (446)
T 3tvi_A          309 NSEVGFCRKILSILEMYGVSFEHMPSG----VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV  377 (446)
T ss_dssp             GGSTTHHHHHHHHHHTTTCCEEEBCEE----TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred             CccHHHHHHHHHHHHHcCCcEEEEecC----CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence            579999999999999999999988743    2357888875442  4677777777655543333       55678888


Q ss_pred             EEeC-----CCCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 018896          165 KLNG-----DTSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (349)
Q Consensus       165 KV~~-----~~~~R~EI~~la~iFrAkIVDvs--~~sltIEvTG~~~KIdafi~~L~  214 (349)
                      -|--     .+..-+.+++.....+-+|.-++  ...+.|-+.=+.+..+..++.|.
T Consensus       378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH  434 (446)
T 3tvi_A          378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY  434 (446)
T ss_dssp             EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred             EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence            8743     23344566776666667775544  33333333334455555555554

>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13

Probab=86.66  E-value=1.5  Score=35.16  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 018896          162 MLIKLNGDT--STWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (349)
Q Consensus       162 aLIKV~~~~--~~R~EI~~la~iFrAkI------VDv----s~~sltIEvTG~~~KIdafi~~L~~fGI-lEi  221 (349)
                      .++|+....  ...+-|.++++.|+..+      ||-    .-.++++|++|+++++++.++.|+..|+ +|+
T Consensus        22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv   94 (106)
T 3dhx_A           22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV   94 (106)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence            577776543  45678999999998554      233    5568999999999999999999999995 344

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=85.84  E-value=0.34  Score=48.35  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             cceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ..++-|.+.|.|+||||+.|+++|+..|.+|+|+.
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~  391 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMV  391 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEe
Confidence            36789999999999999999999999999999963

>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}

Probab=85.02  E-value=1.3  Score=35.50  Aligned_cols=45  Identities=9%  Similarity=0.089  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHhcC--cEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 018896          171 STWPEIMWLVDIFR--AKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (349)
Q Consensus       171 ~~R~EI~~la~iFr--AkIVDvs~~sltIEvTG~~~KIdafi~~L~~  215 (349)
                      .-|.-+.++|+.++  +.|-...+.++.+++-|++++|++|++.|+.
T Consensus        26 GFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~   72 (98)
T 3trg_A           26 FFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE   72 (98)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred             CccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence            56999999999887  7889999999999999999999999999986

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=80.75  E-value=10  Score=31.20  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=53.8

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhcc---CcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARR---GYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRR---GyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV  148 (349)
                      ..+.+.|...+.++....|..++.+.   +|.+   ++-++....+  +||.+. .+.++++.|=+.|.+...|+-|
T Consensus        35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV  108 (109)
T 1rwu_A           35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV  108 (109)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            46899999999999999999999988   8988   3445544444  566555 4678899999999988877755

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=80.39  E-value=1.1  Score=42.33  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             cceeEEEEEEeCCCchhhhhhhhhccccccccee
Q 018896          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVI  345 (349)
Q Consensus       312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl  345 (349)
                      ..+..|.+.+.|+||.|.++-+.|+.||.|+-.|
T Consensus       198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkI  231 (283)
T 2qmx_A          198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKI  231 (283)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEE
Confidence            3578888999999999999999999999998665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	349
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	9e-30
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	3e-10
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	1e-29
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	2e-09
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	4e-29
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	2e-09
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	2e-28
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	7e-28
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	9e-24
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	4e-16
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	2e-04
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	2e-15
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	4e-07
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	7e-14
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	2e-06
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	3e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	1e-05

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (268), Expect = 9e-30
 Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           ++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G ++ + Q
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 135 VVEQLNKLVNVIKVEDI 151
           + +Q  KLV V+KV  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           +R H +SMLV+N PGV+  V  + +RRG+NI  I+
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSIT 35

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  107 bits (268), Expect = 1e-29
 Identities = 34/76 (44%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61

Query: 137 EQLNKLVNVIKVEDIS 152
           +QLNKL+ V+K+ D+S
Sbjct: 62  KQLNKLIEVVKLIDLS 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
           H +S+L+ N  G L+ V G+ S RGYNI+ +S
Sbjct: 3   HIISLLMENEAGALSRVAGLFSARGYNIESLS 34

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 4e-29
 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 1   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60

Query: 137 EQLNKLVNVIKVEDI 151
           +QL+KLV+V++V ++
Sbjct: 61  KQLHKLVDVLRVSEL 75

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
             LS+L+ N  G L+ V G+ S+RGYNI+ ++
Sbjct: 2   RILSVLLENESGALSRVIGLFSQRGYNIESLT 33

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  103 bits (259), Expect = 2e-28
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +E +VERELML+K+        E+  L DIFR  ++D++    TIE+TG   K+    + 
Sbjct: 1   SEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQA 60

Query: 213 LSKFGIKELARTGKIALRR 231
           +    I E+ARTG   L R
Sbjct: 61  VDCNLILEIARTGVSGLSR 79

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (255), Expect = 7e-28
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
            HVERE+ML+K+        E+    +IFR +++D++    T+++ G  GK+ A   ++ 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 215 KFG-IKELARTGKIALRR 231
               I E+AR+G + L R
Sbjct: 63  DVAKIVEVARSGVVGLSR 80

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.3 bits (227), Expect = 9e-24
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
            E  VERE+ LIK+  D     EI  LV+IFR K++D+S     IE+TG   K+ A    
Sbjct: 3   PENRVEREMALIKVRFDEDK-QEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINL 61

Query: 213 LSKFGIKELARTGKIALRR 231
           L +  ++E+ARTG +A+ R
Sbjct: 62  LPQKQVEEIARTGIVAMNR 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 70.5 bits (173), Expect = 4e-16
 Identities = 11/79 (13%), Positives = 30/79 (37%)

Query: 70  PPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129
           P ++        +     +  G++  +  +FA +G NI +  +  +       I +   E
Sbjct: 2   PEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE 61

Query: 130 RVLRQVVEQLNKLVNVIKV 148
            V  + ++ +  +   I+ 
Sbjct: 62  DVAEKALQAMKAIPGTIRA 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN 348
             L  +  N PGVL  +  + + +G NI      
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ 45

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
               +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +
Sbjct: 2   VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKD 61

Query: 138 Q 138
            
Sbjct: 62  N 62

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS 346
             LS+ + N  G L  VT V+++   N+  + 
Sbjct: 4   KQLSIFLENKSGRLTEVTEVLAKENINLSALC 35

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.1 bits (156), Expect = 7e-14
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   + +   D  G + +I  +    G NI++  +  + +    TI++   + V   V  
Sbjct: 2   QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61

Query: 138 QLNKLVNVIKVEDIS 152
            +   V+  K+E + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQ 343
             L +   + PG L  +  ++   G NIQ
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQ 32

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVSGTERVLRQVVEQ 138
           + +   ++ G++  +  + A  G NI      L      +    I          +++E+
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 139 LNKLVNVIKVE 149
           +     +I++E
Sbjct: 64  VKTFDYIIEIE 74

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141
           + +   +  G + ++ G  +  G  IE +    N + A   I  S  ++   +V+++   
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKC-IEVLKEKK- 59

Query: 142 LVNVIKVEDI 151
            V+++   D+
Sbjct: 60  -VDLLAASDL 68

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   I+    D  GI N +  +  + G NI    + +   +    +++SG+   + +V  
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVET 63

Query: 138 QLNKLVN----VIKVEDISNEPH 156
            L  L      +  ++  S   H
Sbjct: 64  TLPLLGQQHDLITMMKRTSPHDH 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.96
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.95
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.93
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.93
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.93
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.68
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.59
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.58
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.58
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.21
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.08
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	98.87
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.61
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.57
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.36
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.27
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.64
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.61
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.54
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	97.2
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	96.77
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.25
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	95.96
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	95.85
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	95.62
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	94.92
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.71
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.19
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	93.69
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.25
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.72
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	91.14
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	90.81
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	90.73
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	89.7
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	87.33
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	87.05
d3dhxa1	99	Methionine import ATP-binding protein MetN {Escher	86.87
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	85.37
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	84.87

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.96  E-value=1.5e-29  Score=198.43  Aligned_cols=75  Identities=45%  Similarity=0.810  Sum_probs=73.1

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      |+|+|+++|+|+||+|+||+|+|+||||||+||++|++|++++  |||++.|+++.++||+|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            7899999999999999999999999999999999999999985  99999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.7e-29  Score=197.36  Aligned_cols=76  Identities=37%  Similarity=0.713  Sum_probs=73.8

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      |++|+||++|+|+||+|+||+|+|+||||||+||+||+|+++++  |||+++|+++.++|+++||+||+||++|++++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            78999999999999999999999999999999999999999986  99999999999999999999999999999985

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.9e-28  Score=190.58  Aligned_cols=73  Identities=47%  Similarity=0.794  Sum_probs=71.3

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      ||+|+++|+|+||+|+||+|+|+||||||+||+|++||++++  |||++.|+++.++||+|||+||+||++|+|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999986  9999999999999999999999999999997

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.93  E-value=6.4e-27  Score=185.43  Aligned_cols=83  Identities=36%  Similarity=0.449  Sum_probs=79.8

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 018896          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (349)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg~  233 (349)
                      +++|+|||+||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCC
Q 018896          234 LGD  236 (349)
Q Consensus       234 ~~~  236 (349)
                      ..+
T Consensus        82 ~~l   84 (86)
T d2pc6a1          82 RVL   84 (86)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            643

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.7e-26  Score=182.15  Aligned_cols=80  Identities=41%  Similarity=0.571  Sum_probs=76.9

Q ss_pred             CchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 018896          153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (349)
Q Consensus       153 ~~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAL~Rg  232 (349)
                      ++++|+|||+|+||+++ ++|.+|+++++.|+|+|||+++++++||+||+++|||+|++.|+||||+|++|||.+||+||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 018896          233 K  233 (349)
Q Consensus       233 ~  233 (349)
                      .
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-26  Score=183.17  Aligned_cols=82  Identities=30%  Similarity=0.524  Sum_probs=79.0

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecC
Q 018896          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRRE  232 (349)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~R~EI~~la~iFrAkIVDvs~~sltIEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAL~Rg  232 (349)
                      .++|+||||||||++++++|.+|.++++.|+|+|||+++++++||+||+++|||+|++.|+||| |+|++|||.+||.||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            4689999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             cCC
Q 018896          233 KLG  235 (349)
Q Consensus       233 ~~~  235 (349)
                      +..
T Consensus        82 ~~~   84 (86)
T d2f1fa2          82 DKI   84 (86)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            764

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.68  E-value=4.6e-17  Score=124.28  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=57.3

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHH
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ  138 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQ  138 (349)
                      |+.++|||+++||||+|+||+++|++|||||+|+++++++++++++++|+..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHC
Confidence            78999999999999999999999999999999999999999999999998777777666555

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.59  E-value=1.7e-16  Score=123.62  Aligned_cols=36  Identities=42%  Similarity=0.705  Sum_probs=35.0

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      ++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~   36 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVA   36 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEe
Confidence            589999999999999999999999999999999997

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.6e-16  Score=122.93  Aligned_cols=37  Identities=46%  Similarity=0.828  Sum_probs=35.7

Q ss_pred             cceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       312 ~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      +++|+|+++|+|+||||+||+|||+||||||+||+||
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~   37 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVG   37 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEe
Confidence            4789999999999999999999999999999999997

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.5e-16  Score=121.65  Aligned_cols=35  Identities=40%  Similarity=0.694  Sum_probs=34.3

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      +|||+++|+|+||||+||+|||+|||||||||+||
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~   35 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVA   35 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEc
Confidence            69999999999999999999999999999999997

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=4.4e-11  Score=92.20  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCeeeeEEEec
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLiDVikV~dl  151 (349)
                      .|.|.+.-+|+||+|.+|+++|+++|+||.++.++...+.++..++++.|+...++++++|.++.+|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            4789999999999999999999999999999999998888886677777888999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=7.7e-11  Score=90.07  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=62.0

Q ss_pred             EEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHHhcCeeeeEEEecC
Q 018896           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (349)
Q Consensus        79 ~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~gdd~~veQLiKQL~KLiDVikV~dlt  152 (349)
                      -|.|.+..+|+||+|.+|+++|+++|+||.++.++..++.+.  +.|.+  |....++++++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEEe
Confidence            378999999999999999999999999999999998887774  55555  4456688999999999999998653

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.87  E-value=4.4e-10  Score=85.09  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      .+.||++++|+||+|++|+++|++|||||+||+|+
T Consensus         3 ~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~   37 (70)
T d2f06a2           3 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIA   37 (70)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEe
Confidence            47799999999999999999999999999999985

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.61  E-value=3.2e-08  Score=75.15  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCC-Cc--EEEEEEeCChHHHHHHHHHHhcCeeeeEEEe
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted-~g--iiTIVV~gdd~~veQLiKQL~KLiDVikV~d  150 (349)
                      -|.|.++|+||+|+.|+.+|+..|.||.++......+ ..  .++|-+...+..++.|+++|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            5899999999999999999999999999999764333 22  4888777555459999999999999999973

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.57  E-value=6.5e-08  Score=72.56  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             EEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHH
Q 018896           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE  137 (349)
Q Consensus        81 tISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiK  137 (349)
                      .|+|.++|+||.|.+|+++|++.|+||+++.+..+.+.+.+.+.|+..++..+-|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHH
Confidence            589999999999999999999999999999999999888899999855555544443

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.36  E-value=8e-07  Score=67.76  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=57.3

Q ss_pred             ceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHhcCe
Q 018896           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV  143 (349)
Q Consensus        77 m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~KLi  143 (349)
                      .+..+|+++..|+||++++|+++++++|.||..+......+.-.+.+.+++++..++++.+.|++|-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999888776665577778878888899998887763

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.27  E-value=1.1e-06  Score=66.10  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=51.9

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeC-ChHHHHHHHHHHhcCee
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG-TERVLRQVVEQLNKLVN  144 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~g-dd~~veQLiKQL~KLiD  144 (349)
                      ||+.|++.-.||||+++.|+++++++|.||..++.....+.-.+.+.++. ++..++++.++|+++-+
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~   68 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQ   68 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999987654433235555553 23347888888876544

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.2e-05  Score=60.66  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=32.3

Q ss_pred             eeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       314 ~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      -|.|-+..+|+||+|++|+++|+++|+||.++.++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~   37 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLS   37 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheee
Confidence            48899999999999999999999999999998764

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.61  E-value=3.1e-05  Score=59.48  Aligned_cols=68  Identities=19%  Similarity=0.270  Sum_probs=47.4

Q ss_pred             EEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecC------CCcE--EEEEEeC-ChHHHHHHHHHHhcCeeeeE
Q 018896           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV------DKAL--FTIVVSG-TERVLRQVVEQLNKLVNVIK  147 (349)
Q Consensus        80 htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Te------d~gi--iTIVV~g-dd~~veQLiKQL~KLiDVik  147 (349)
                      -.|.|...||||++.+|+++|+.||+||+.|....-.      ..++  ++++++. .+..+++|.++|+.|-+-+.
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~   83 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALD   83 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHce
Confidence            3556779999999999999999999999999864321      1123  5566552 34457777777766654433

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=3.2e-05  Score=58.69  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceeeec
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVISNN  348 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v~  348 (349)
                      ..|.|.+.-+|+||||++|+++|+++|+||.++.++
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~   45 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ   45 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccc
Confidence            458899999999999999999999999999998764

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.20  E-value=0.00094  Score=50.40  Aligned_cols=64  Identities=14%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             EEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc--E-EEEEEeC-ChHHHHHHHHHHhcCeeeeEE
Q 018896           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG-TERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        85 lVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g--i-iTIVV~g-dd~~veQLiKQL~KLiDVikV  148 (349)
                      -.+|+||.|.++.++|+.+|+|+.+|.--|.....  + +=|-++| .++.+++++++|++.-.-++|
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            35799999999999999999999999988876542  3 5555655 344588999998887554443

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.77  E-value=0.00037  Score=51.54  Aligned_cols=32  Identities=28%  Similarity=0.454  Sum_probs=30.1

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceeee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVISN  347 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~v  347 (349)
                      +|++.+.|+||-|++++.+|+..|.||+++.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~   32 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYS   32 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEE
Confidence            58999999999999999999999999999865

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.006  Score=47.54  Aligned_cols=67  Identities=12%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             CceEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHHhcC
Q 018896           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNKL  142 (349)
Q Consensus        76 ~m~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~g-i--iTIVV~gd-d~~veQLiKQL~KL  142 (349)
                      +..+-.|.+.+.|+||.|.+|...|+++|+|+..|.--|..... -  |-|-++|. +..++.+++.|.+-
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~   83 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRND   83 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHh
Confidence            44567888889999999999999999999999999888876543 2  34434443 45577777777654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.96  E-value=0.002  Score=47.74  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=31.5

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      +|.+|++.=.|+||+++.||++++.+|.||..+.
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~   34 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDIS   34 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEE
Confidence            4679999999999999999999999999999874

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.85  E-value=0.0024  Score=47.50  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             EEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       316 ~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      -|.+.+.|+||+|+.|+..||..|.||.++.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~   33 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQ   33 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEE
Confidence            4889999999999999999999999999875

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=95.62  E-value=0.0031  Score=47.89  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             eEEEE--EEeCCCchhhhhhhhhcccccccceee
Q 018896          315 HTLSM--LVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       315 ~~ls~--~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      |++.+  .-.++||+++.||++|+.||.||+.|.
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~   38 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS   38 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhh
Confidence            55554  478999999999999999999999875

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=94.92  E-value=0.008  Score=44.87  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             ceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       313 ~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ...+|++.-.|+||++++|+++++.+|-||..+.
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~   37 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSR   37 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeE
Confidence            4568999999999999999999999999998764

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.71  E-value=0.03  Score=40.52  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=39.1

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHHh
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL~  140 (349)
                      ..++||+..|+.+.++..|+||+-++.+.++  -.++++|+.+|  .++.++.|+
T Consensus        11 m~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~d--~~~Av~~Lh   61 (67)
T d2hmfa2          11 MRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEKD--LLNCVRKLH   61 (67)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGGG--HHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHHH--HHHHHHHHH
Confidence            3699999999999999999999999987655  34888887443  344444443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.19  E-value=0.024  Score=43.95  Aligned_cols=39  Identities=15%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             CCCccceeEEEEEEeCCCchhhhhhhhhcccccccceee
Q 018896          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       308 ~~~~~~~~~ls~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      .+.+-.+..|.+.+.|+||.|..+-+.|+++|.|+..|.
T Consensus        10 ~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~Ie   48 (97)
T d1phza1          10 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIE   48 (97)
T ss_dssp             CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEE
T ss_pred             CCCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEE
Confidence            355567788999999999999999999999999987763

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.69  E-value=0.051  Score=41.88  Aligned_cols=48  Identities=23%  Similarity=0.310  Sum_probs=38.2

Q ss_pred             EEEEEE---EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCCh
Q 018896           80 HTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (349)
Q Consensus        80 htISIl---VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd  129 (349)
                      -.|++.   ..++||++.||.+.|++.|+||+-++.+.++.  -++++|+.++
T Consensus        16 a~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d   66 (100)
T d2hmfa3          16 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED   66 (100)
T ss_dssp             EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT
T ss_pred             EEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH
Confidence            355664   37999999999999999999999999776553  3888887543

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.25  E-value=0.11  Score=39.39  Aligned_cols=38  Identities=11%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             cCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (349)
Q Consensus        87 eNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd  128 (349)
                      .++||++.||.+.|++.|+||+-++.+    +.-++++++.+
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~S----e~~is~~v~~~   61 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPS   61 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCG
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEec----CCeEEEEEchh
Confidence            589999999999999999999999843    22477777643

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.72  E-value=0.058  Score=39.84  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCChHHHHHHHHHH
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gdd~~veQLiKQL  139 (349)
                      ..++||++.|+.+.+++.|+||+-++-+.++  --|+++|+.+  ..+..++.|
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se--~~Is~vV~~~--d~~~Av~~L   59 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK--VNISFIVNEA--EAEGCVQAL   59 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC--SEEEEEEEHH--HHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc--eEEEEEEeHH--HHHHHHHHH
Confidence            4689999999999999999999999987655  3488888633  234444444

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.14  E-value=0.38  Score=35.99  Aligned_cols=60  Identities=18%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCcE-------EEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 018896          163 LIKLNG--DTSTWPEIMWLVDIFRAK-------VVDISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (349)
Q Consensus       163 LIKV~~--~~~~R~EI~~la~iFrAk-------IVDvs~---~sltIEvTG~~~KIdafi~~L~~fGI-lEia  222 (349)
                      ++|+..  +..+.+-|.++++.|+-.       |=++..   ..+++|++|+++++++.++.|+..|| +|+.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            566654  446777899999988754       444444   68999999999999999999999996 5653

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.81  E-value=0.05  Score=40.52  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.5

Q ss_pred             EEEeCCCchhhhhhhhhcccccccceee
Q 018896          319 MLVNNTPGVLNIVTGVISRRGYNIQVIS  346 (349)
Q Consensus       319 ~~V~n~~Gvl~rv~glf~~RgyNi~sl~  346 (349)
                      ..+.|+||.|..+-+.|+.+|.|+.+|.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~Ie   34 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIE   34 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEE
Confidence            3457999999999999999999988763

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.73  E-value=0.27  Score=37.16  Aligned_cols=64  Identities=17%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcC-------cEEEEecC---CEEEEEEeC-ChhHHHHHHHHhccCCc-EEEeecc
Q 018896          162 MLIKLNGD--TSTWPEIMWLVDIFR-------AKVVDISE---HALTIEVTG-DPGKMVAVQRNLSKFGI-KELARTG  225 (349)
Q Consensus       162 aLIKV~~~--~~~R~EI~~la~iFr-------AkIVDvs~---~sltIEvTG-~~~KIdafi~~L~~fGI-lEiaRTG  225 (349)
                      .++|+...  ..+.+-|.++++.|+       |+|=++..   ..+++|++| +++++++.++.|+..|+ +|+.+-|
T Consensus        18 ~lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          18 YIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eEEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            46777654  456778999999886       44555555   678999999 78899999999999995 5887765

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.70  E-value=0.55  Score=35.47  Aligned_cols=57  Identities=12%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE-------EEecC---CEEEEEEeCChhHHHHHHHHhccCCc
Q 018896          162 MLIKLNGDT--STWPEIMWLVDIFRAKV-------VDISE---HALTIEVTGDPGKMVAVQRNLSKFGI  218 (349)
Q Consensus       162 aLIKV~~~~--~~R~EI~~la~iFrAkI-------VDvs~---~sltIEvTG~~~KIdafi~~L~~fGI  218 (349)
                      .++|+....  .+.+-|.++++.|+..+       =++..   .+++++++|+++++++.++.|+..||
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i   88 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNV   88 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCC
Confidence            588887654  56667999999998655       23332   67899999999999999999999995

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=1.8  Score=31.87  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHHhcCeeeeEE
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~gi--iTIVV~-gdd~~veQLiKQL~KLiDVikV  148 (349)
                      ..|.+.+...|.++..+.|..++.+..-+-+.++.-++....+  +|+.+. .+++.+..|-+.|.+...|.-|
T Consensus        13 c~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          13 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            3689999999999999999999998665666777777666555  566554 4778899999999998887654

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=87.05  E-value=1.8  Score=32.52  Aligned_cols=69  Identities=10%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             eEEEEEEEEcCcccHHHHHHHHHhccCcceeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHHhcCeeee
Q 018896           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI  146 (349)
Q Consensus        78 ~~htISIlVeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~--giiTIVV~gdd~~veQLiKQL~KLiDVi  146 (349)
                      +-..++|.++|+--.-.+|=.++.+-|-.|..=.==|..+.  +++.++++++.+.+..+...|.+|..|-
T Consensus         3 ri~vigIive~r~~~a~kVn~iL~~yg~~I~gRmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           3 RFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEEEEEEeChHHhHHHHHHHHHHCCCEEEEeccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCEE
Confidence            45789999999998889999999999988875433354444  4699999999999999999999987763

>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.55  Score=35.52  Aligned_cols=57  Identities=12%  Similarity=0.063  Sum_probs=46.3

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcCcEE-------EEecC---CEEEEEEeCChhHHHHHHHHhccCCc
Q 018896          162 MLIKLNGD--TSTWPEIMWLVDIFRAKV-------VDISE---HALTIEVTGDPGKMVAVQRNLSKFGI  218 (349)
Q Consensus       162 aLIKV~~~--~~~R~EI~~la~iFrAkI-------VDvs~---~sltIEvTG~~~KIdafi~~L~~fGI  218 (349)
                      .++|+...  ....+-|.+|++.|+..+       =++..   ..+++|++|+++++++.++.|+..|+
T Consensus        21 ~llrl~f~g~~a~~Piis~l~~~~~v~vnIL~g~i~~i~~~~~G~Lil~l~g~~~~i~~al~~L~~~~v   89 (99)
T d3dhxa1          21 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHV   89 (99)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEEeCCCcCccHHHHHHHHhCCceEEEEEeeEEeCCeeEEEEEEEeeCCHHHHHHHHHHHHHcCC
Confidence            47888764  456778999999998654       33444   68999999999999999999999995

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.37  E-value=0.1  Score=39.49  Aligned_cols=39  Identities=13%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             EcCcccHHHHHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (349)
Q Consensus        86 VeNkPGVL~RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd  128 (349)
                      ..++||++.||.+.|++.|+||+-++.+    +.-++++|+..
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S----e~~is~~v~~~   62 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTT   62 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCC
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc----CcEEEEEEchh
Confidence            4578999999999999999999999732    23578888643

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.87  E-value=0.77  Score=34.30  Aligned_cols=45  Identities=20%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             EEEEEEEEcCcccHHH----HHHHHHhccCcceeeEeeeecCCCcEEEEEEeCC
Q 018896           79 RHTISVFVGDESGIIN----RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (349)
Q Consensus        79 ~htISIlVeNkPGVL~----RItGLFsRRGyNIeSLtVg~Ted~giiTIVV~gd  128 (349)
                      ++.+.|.|..|||||.    .|..-+.+.||+++++.+|.     ++.+.++++
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-----~~~l~i~~~   49 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-----VITFTMDED   49 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-----EEEEEECCS
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-----EEEEEEcCC
Confidence            4788999999999984    67778899999999988763     577877754