Citrus Sinensis ID: 018917


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL
cccHHHHHHHHHHccEEEcccccccccccccccccccccHHHHHHHcccccEEEcccccccccccccccccccccccHHHHHHcHHHHHHcccEEEccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEcccccccHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEccHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccc
ccHHHHHHHHHHHHHEEEcccccccccccccccHHHHccHHHHHHHHHHHcEEHHcccHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHHcccHHHHHHEHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEcccccccccHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccEccccc
MQFCDGVGVAHLLNATLVLPKFEVAAYwnessdfadifeaDYFIQHMDGFVKVVkelppeisskepfhvdcskrkgqfDYVESVLPALLEhkyisltpamsqrrdrypRFAKAALCQACYSALRLTRSLQKKAAELLEAipkpflslhlrfepdmvaysqceyqglspTSMQAIEAArgdrkpwtgeVAHIWRrrgkcpltpneTALILQAlsiptntniylAAGDGLMEIEGLTSVYTNVVtksalrtgedftrmhgntKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRddflmgrgsalpdcfcefel
MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEisskepfhvdcsKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWrrrgkcpltPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKsalrtgedftrmhgNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL
MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL
**FCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEI****PFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPT*MQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVH*********************
MQFCDGVGVAHLLNATLVLPKFEVAAY**ESSDFADIFEADYFIQHMDGFVKVVKELPPEISS*EPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEV**********PLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKEL*********************DCFCEFE*
MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAI*********WTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL
MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEF**
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MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.982 0.660 0.272 2e-30
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 181/374 (48%), Gaps = 31/374 (8%)

Query: 3   FCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEIS 62
            C+ V  A ++NATLVLP+ +  ++W++ S F  I++ ++FI+ +   VK+V ++P    
Sbjct: 107 ICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHK 166

Query: 63  SKEPFHVDCSKRKGQFD-----YVESVLPALLEHKYISLTP---AMSQRRDRYPRFAKAA 114
           + +   +   + +   D     Y+ + L A+ EH  I LTP    +++  D  P + +  
Sbjct: 167 NGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDN-PEYQRLR 225

Query: 115 LCQACYSALRLTRSLQKKAAELLEAIPKP--FLSLHLRFEPDMVAYSQCEYQGLSPTSMQ 172
            C+  Y ALR    + K +  +++ +     F+S+HLRFE DM+A++ C +   +P   +
Sbjct: 226 -CRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGC-FDIFNPEEQK 283

Query: 173 AIEAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLM 229
            +   R +       + +  R  GKCPLTP E  LIL+A+    +T IYLAAG+   G  
Sbjct: 284 ILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343

Query: 230 EIEGLTSVYTNVVTKSALRTGEDFTRM-HGNTKAALDYYVSINSDSYMATYFG--NMDKM 286
            ++   +++  +   S++   E+ +    G   +A+DY V + SD +M TY G  N    
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANN 403

Query: 287 VAAMRAFKGLYKTLFLSRKAFAEFTYQGLEGKE--LMQALWKVHRDDFLMGR-------- 336
           +   R + G   T+   RKA A       +GK     +A+ +V       G         
Sbjct: 404 LLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPES 463

Query: 337 --GSALPDCFCEFE 348
              ++ P+CFC+  
Sbjct: 464 FYTNSWPECFCQMN 477





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
317106736444 JHL06P13.13 [Jatropha curcas] 0.994 0.781 0.864 0.0
224073734437 predicted protein [Populus trichocarpa] 0.991 0.791 0.817 1e-174
356519361386 PREDICTED: DUF246 domain-containing prot 0.994 0.898 0.824 1e-173
449436132441 PREDICTED: DUF246 domain-containing prot 0.994 0.786 0.815 1e-172
255553137441 conserved hypothetical protein [Ricinus 0.959 0.759 0.844 1e-172
225443013 476 PREDICTED: DUF246 domain-containing prot 0.994 0.728 0.808 1e-171
297743429443 unnamed protein product [Vitis vinifera] 0.994 0.783 0.808 1e-171
356528958440 PREDICTED: DUF246 domain-containing prot 0.994 0.788 0.801 1e-169
5903043399 Similar to gb|X80301 auxin-independent g 0.994 0.869 0.786 1e-167
42571835351 O-fucosyltransferase family protein [Ara 0.994 0.988 0.786 1e-167
>gi|317106736|dbj|BAJ53232.1| JHL06P13.13 [Jatropha curcas] Back     alignment and taxonomy information
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/347 (86%), Positives = 324/347 (93%)

Query: 3   FCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEIS 62
           FCDGVG+A LLNATLVLPKFE AAYWNESS FAD+F+ DYFIQ + GFVKVVK+LPPEI+
Sbjct: 98  FCDGVGIARLLNATLVLPKFEAAAYWNESSGFADVFDVDYFIQQVKGFVKVVKDLPPEIA 157

Query: 63  SKEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSA 122
           SKEPFHVDCSKRKGQFDY+ESVLP+LLEH YIS+TPAMSQRRDRYP +AKAALCQACYSA
Sbjct: 158 SKEPFHVDCSKRKGQFDYIESVLPSLLEHHYISITPAMSQRRDRYPSYAKAALCQACYSA 217

Query: 123 LRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRK 182
           LRLTRSL+KKA+ELLEAIPKPFLSLHLRFEPDMVAYSQCEY GLSP SM+AIEAAR  RK
Sbjct: 218 LRLTRSLEKKASELLEAIPKPFLSLHLRFEPDMVAYSQCEYLGLSPASMEAIEAARDYRK 277

Query: 183 PWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVV 242
           PWTGE A IWR+RGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTS+YTNV 
Sbjct: 278 PWTGESARIWRKRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSIYTNVF 337

Query: 243 TKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFL 302
            K+ L + EDFT MHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRA+KGLYKTLFL
Sbjct: 338 NKATLLSSEDFTSMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAYKGLYKTLFL 397

Query: 303 SRKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL 349
           SR+AFAEFT+Q L+GKELMQALWK H +DF+MGRGSALPDCFCEF+L
Sbjct: 398 SRRAFAEFTFQSLKGKELMQALWKTHEEDFVMGRGSALPDCFCEFKL 444




Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073734|ref|XP_002304147.1| predicted protein [Populus trichocarpa] gi|222841579|gb|EEE79126.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519361|ref|XP_003528341.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|449436132|ref|XP_004135848.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449530766|ref|XP_004172363.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255553137|ref|XP_002517611.1| conserved hypothetical protein [Ricinus communis] gi|223543243|gb|EEF44775.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225443013|ref|XP_002267150.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743429|emb|CBI36296.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528958|ref|XP_003533064.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|5903043|gb|AAD55602.1|AC008016_12 Similar to gb|X80301 auxin-independent growth promoter (axi 1) from Nicotiana tabacum. EST gb|AA605466 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42571835|ref|NP_974008.1| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|332194711|gb|AEE32832.1| O-fucosyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2035084439 AT1G52630 [Arabidopsis thalian 0.991 0.788 0.789 1.4e-151
TAIR|locus:2076552512 AT3G02250 [Arabidopsis thalian 0.922 0.628 0.335 8.8e-47
TAIR|locus:2143181508 AT5G15740 [Arabidopsis thalian 0.896 0.616 0.332 1.9e-44
TAIR|locus:2009467565 AT1G22460 [Arabidopsis thalian 0.862 0.532 0.328 1.8e-42
TAIR|locus:2157096652 AT5G35570 [Arabidopsis thalian 0.939 0.503 0.325 4.9e-41
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.842 0.535 0.335 8.7e-40
TAIR|locus:2014869499 AT1G14020 [Arabidopsis thalian 0.871 0.609 0.325 1.4e-39
TAIR|locus:2080285638 AT3G54100 [Arabidopsis thalian 0.962 0.526 0.317 1.6e-39
TAIR|locus:2150129631 FRB1 "FRIABLE 1" [Arabidopsis 0.865 0.478 0.342 2.5e-39
TAIR|locus:2065563638 AT2G37980 [Arabidopsis thalian 0.865 0.473 0.330 3.6e-39
TAIR|locus:2035084 AT1G52630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 273/346 (78%), Positives = 307/346 (88%)

Query:     4 CDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISS 63
             CDGVG+A LLNATLVLPKFEVAAYWNESS FAD+F+ DYFIQ M G+++VVKELP +I+S
Sbjct:    94 CDGVGIARLLNATLVLPKFEVAAYWNESSGFADVFDVDYFIQKMSGYIEVVKELPKDIAS 153

Query:    64 KEPFHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRYPRFAKAALCQACYSAL 123
             KEPF VDCSKRKGQFDY+ESVLP LLEH YIS TPAMSQRRDRYP +A+A LCQACYSA+
Sbjct:   154 KEPFKVDCSKRKGQFDYIESVLPLLLEHHYISFTPAMSQRRDRYPEYARATLCQACYSAI 213

Query:   124 RLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKP 183
              LT SL+KKA EL +AIPKPFLSLHLRFEPDMVAYSQCEY  LSP+S+ AIEAAR DRKP
Sbjct:   214 HLTSSLEKKAVELFDAIPKPFLSLHLRFEPDMVAYSQCEYPNLSPSSIAAIEAARADRKP 273

Query:   184 WTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVT 243
             WTGE+A  WR+RGKCPLTPNET L+LQ+L+IPT+TNIYLAAGDGLME+EG TSVYTNV T
Sbjct:   274 WTGELAQTWRKRGKCPLTPNETVLMLQSLNIPTSTNIYLAAGDGLMEMEGFTSVYTNVFT 333

Query:   244 KSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAAMRAFKGLYKTLFLS 303
             KS L   EDFTRMHGNTKAALDY+VSINSD+Y+ATYFGNMDK+VAAMR +K ++ TLFLS
Sbjct:   334 KSVLLNQEDFTRMHGNTKAALDYHVSINSDAYVATYFGNMDKIVAAMRTYKQMHNTLFLS 393

Query:   304 RKAFAEFTYQGLEGKELMQALWKVHRDDFLMGRGSALPDCFCEFEL 349
             RKAFAE T QGLEG EL +ALW+VH+ DF +GRG ALPDCFCEFEL
Sbjct:   394 RKAFAELTSQGLEGAELKKALWEVHKSDFAIGRGFALPDCFCEFEL 439




GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_III0303
hypothetical protein (437 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-104
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 9e-79
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 9e-06
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  307 bits (789), Expect = e-104
 Identities = 115/310 (37%), Positives = 162/310 (52%), Gaps = 45/310 (14%)

Query: 1   MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPE 60
            Q CD V VA LLNATLVLP+ +  + W +SS F DI++ D+FI+ +   V+VVK+LP E
Sbjct: 15  SQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKKLPEE 74

Query: 61  ISSKEP--FHVDCSKRKGQFDYVESVLPALLEHKYISLTPAMSQRRDRY-PRFAKAALCQ 117
           ++SK+P         R     Y+E VLP L +H  I L P  S+  +   P   +   C+
Sbjct: 75  LASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDLLPPEIQRLRCR 134

Query: 118 ACYSALRLTRSLQKKAAELLEAIPK---PFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAI 174
             + ALR    +++   +L++ + +   PFL+LHLRFE DM+A+S C             
Sbjct: 135 VNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSGC------------- 181

Query: 175 EAARGDRKPWTGEVAHIWRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEI 231
                                GKCPLTP E  L+L+AL  P +T IYLAAG+   G   +
Sbjct: 182 ---------------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRL 220

Query: 232 EGLTSVYTNVVTKSALRTGED--FTRMHGNTKAALDYYVSINSDSYMATYFGNMDKMVAA 289
           + L S++ N+ TK  L T E+      H +  AALDY V + SD ++ TY GN  K VA 
Sbjct: 221 DPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAG 280

Query: 290 MRAFKGLYKT 299
            R + G  KT
Sbjct: 281 HRRYLGHRKT 290


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 93.44
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 91.68
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=1.7e-50  Score=389.73  Aligned_cols=280  Identities=28%  Similarity=0.421  Sum_probs=191.9

Q ss_pred             CchhhHHHHHHHhcceEEccccCcccccCCCCC-----CCccccHHHHHHhccCceEEeccCCccccCCCCc--------
Q 018917            1 MQFCDGVGVAHLLNATLVLPKFEVAAYWNESSD-----FADIFEADYFIQHMDGFVKVVKELPPEISSKEPF--------   67 (349)
Q Consensus         1 ~~IcdaV~vArlLNATLVlP~l~~~s~w~D~s~-----F~dIfD~dhFI~~L~~dVrIvk~LP~~~~~~~~~--------   67 (349)
                      |++++||++|++||+|||||.+.....|++.++     |+++||+++|+++++++|.+.+.+|..+......        
T Consensus        15 ~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~~~   94 (351)
T PF10250_consen   15 MGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSPWE   94 (351)
T ss_dssp             HHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-B-
T ss_pred             HHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccccc
Confidence            478999999999999999999999999999988     9999999999999999999999998655432110        


Q ss_pred             -----------------------eecccC-CCCccchHHhhHHHHHhc------ceEEEccCcccccc-CChhHHHHHhH
Q 018917           68 -----------------------HVDCSK-RKGQFDYVESVLPALLEH------KYISLTPAMSQRRD-RYPRFAKAALC  116 (349)
Q Consensus        68 -----------------------~~~~~~-~~s~~~Y~~~vlp~l~k~------~vi~l~~~~~~l~~-~~p~~~q~LRC  116 (349)
                                             ...... +.++.+|+++++|.+.++      +|+.|.++...+.+ ..+.++|+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r---  171 (351)
T PF10250_consen   95 SGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR---  171 (351)
T ss_dssp             -------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG---
T ss_pred             cccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE---
Confidence                                   001111 234556788899999886      99999999888764 47777876   


Q ss_pred             HhhccccccchHHHHHHHHHHHhcC---CCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcc--hhhh
Q 018917          117 QACYSALRLTRSLQKKAAELLEAIP---KPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGE--VAHI  191 (349)
Q Consensus       117 r~nf~ALrF~~~I~~lg~~lv~rl~---g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~--~~~~  191 (349)
                           +|+|+++|+++|+++++++.   ++|||+|||+|+||  +++|.+ ++   +...|+.+|..    .++  .+..
T Consensus       172 -----~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~-~~---~~~~~~~~~~~----~~~~~~~~~  236 (351)
T PF10250_consen  172 -----YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEF-KG---ERHLLASPRCW----GKKSINPEK  236 (351)
T ss_dssp             -----G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT--T-------TTTHHHH-----GGGTT---
T ss_pred             -----EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--Hhhccc-CC---chHHHHHhHhh----ccccccchh
Confidence                 99999999999999999987   89999999999999  888997 44   45556666632    111  2346


Q ss_pred             hhcCCCCCCCHHHHHHHHHHcCCCCCceEEEeecC---CcchhhHHHHhccccccccCCCChhhhccccCCccceeeEEE
Q 018917          192 WRRRGKCPLTPNETALILQALSIPTNTNIYLAAGD---GLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYV  268 (349)
Q Consensus       192 ~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~g~---g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V  268 (349)
                      .+..|.||++|++++.+++++|+.+.|.||||+++   |...|++|++.||++++|+++.+.+|++++.+.++|+||++|
T Consensus       237 ~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vD~~i  316 (351)
T PF10250_consen  237 KRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLNDDQLAMVDQEI  316 (351)
T ss_dssp             --HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-----S--HHHHHHH
T ss_pred             hhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccccchhHHHHHH
Confidence            68899999999999999999999999999999999   678899999999999999999999999999889999999999


Q ss_pred             eecCceeeecCCCchHHHHHHHhhhcCCCe
Q 018917          269 SINSDSYMATYFGNMDKMVAAMRAFKGLYK  298 (349)
Q Consensus       269 ~~~SDvFv~t~~Gn~a~~v~GhR~~~G~~k  298 (349)
                      |++||+||+|..++|+.+|+++|.+.|+.+
T Consensus       317 ~~~s~~Figt~~Stfs~~i~~~R~~~g~~~  346 (351)
T PF10250_consen  317 CSRSDVFIGTCGSTFSSNIARERHYRGKPK  346 (351)
T ss_dssp             HHHSSEEEE-TT-HHHHHHHHHHHHSSSS-
T ss_pred             HhcCCEEEecCcchhHHHhhcccCcCCCCC
Confidence            999999999998889999999999999763



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 68/376 (18%), Positives = 110/376 (29%), Gaps = 121/376 (32%)

Query: 22  FEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELPPEISSKEPF-HV----------- 69
           FE   +  +  D   +FE   F+ + D   K V+++P  I SKE   H+           
Sbjct: 9   FETGEHQYQYKDILSVFEDA-FVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 70  ---DCSKRKG-----QF-------DY--------VESVLPALLEHKYISLTPAMSQRRDR 106
                   K      +F       +Y         E   P+++   YI        +RDR
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-------QRDR 118

Query: 107 Y----PRFAKAALCQACYSALRLTRSLQKKAAELLEAIPKPFLSLHLRFEPDMVAYSQCE 162
                  FAK       Y+  RL   L+ + A LLE  P   + +       ++      
Sbjct: 119 LYNDNQVFAK-------YNVSRLQPYLKLRQA-LLELRPAKNVLID-----GVL------ 159

Query: 163 YQGLSPTSMQAIEAARGDRKPWTGEVAHI-WRRRGKCPLTPNETALILQALSIPTNTNIY 221
             G   T + A++      K        I W     C  +P     +LQ L    + N +
Sbjct: 160 --GSGKTWV-ALDVCL-SYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPN-W 213

Query: 222 LAAGDGLMEIEGLTSVYTNVVTKSALRTGEDF--TRMHGNTKAALDYYVSINSDSYMATY 279
            +  D    I+           ++ LR       ++ + N    L        +      
Sbjct: 214 TSRSDHSSNIK-----LRIHSIQAELR---RLLKSKPYENCLLVLL-------NVQ---- 254

Query: 280 FGNMDKMVAAMRAFKGLYKTLFLSRKA--------------FAEFTYQGLEGKELMQALW 325
               +       AF    K L  +R                  +     L   E+   L 
Sbjct: 255 ----NAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 326 KVHRDDFLMGRGSALP 341
           K     +L  R   LP
Sbjct: 309 K-----YLDCRPQDLP 319


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.36
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 99.14
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 96.24
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 90.91
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.36  E-value=1.5e-12  Score=128.64  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             cccccchHHHHHHHHHHHh-cCCCceeeecccchhhhhhcccccCCCChhHHHHHHHHhcCCCCCCcchhhhhhcCCCCC
Q 018917          121 SALRLTRSLQKKAAELLEA-IPKPFLSLHLRFEPDMVAYSQCEYQGLSPTSMQAIEAARGDRKPWTGEVAHIWRRRGKCP  199 (349)
Q Consensus       121 ~ALrF~~~I~~lg~~lv~r-l~g~fiAlHLR~E~Dmla~sgC~~~g~~~~e~~~l~~~R~~~~~w~~~~~~~~R~~G~CP  199 (349)
                      ..|+|++.|.+.|++.++. |.++|+++|+|...|+...  |...+.  +.-     .-....||+..+-. .-....+|
T Consensus       217 r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~dw~~~--~~~~~~--~~~-----~~y~~~H~Rr~d~~-~~~~~~~p  286 (408)
T 4ap5_A          217 RSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKM--KVKLGS--ALG-----GPYLGVHLRRKDFI-WGHRQDVP  286 (408)
T ss_dssp             HTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCSSGGGC--CCCTTC--BCC-----EEEEEEEECCTTTT-TTTCSSSC
T ss_pred             HHhhhhHHHHHHHHHHHHHHhCcccceeecccchhHhhh--hccccc--ccC-----CCccccccccccch-hhhhccCC
Confidence            4799999999999998765 6899999999999998764  431110  000     00001122221110 01122344


Q ss_pred             CCHHHHHHHHHHcCCCCCceEEEeecCCcchhhHHHHhccccccccCCCChhhhccccCCccceeeEEEeecCceeeecC
Q 018917          200 LTPNETALILQALSIPTNTNIYLAAGDGLMEIEGLTSVYTNVVTKSALRTGEDFTRMHGNTKAALDYYVSINSDSYMATY  279 (349)
Q Consensus       200 LtPeEvgl~L~alGf~~~T~IYlA~g~g~~~l~~L~~~fPn~~tKe~L~~~eEl~~~~~~~~aAlDy~V~~~SDvFv~t~  279 (349)
                      -.++-+..+.+.+.=.+-+.||||+-+.+..+.-|++.+|.++.-..  ..+++..+.....|.||-+||.+||+||+|.
T Consensus       287 s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~d~~~a~idq~Ic~~a~~FiGt~  364 (408)
T 4ap5_A          287 SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMVRFEP--TWEELELYKDGGVAIIDQWICAHARFFIGTS  364 (408)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHHCTTEECCCC--CHHHHHHHHHHHHHHHHHHHHHTEEEEEBCT
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHhCCCcEEecC--cchhhhccCcchhhHHHHHHHHhCCeeEeCC
Confidence            44433333333333224458999987666667889999998654322  2344555555667899999999999999999


Q ss_pred             CCchHHHHHHHhhhcCCCe
Q 018917          280 FGNMDKMVAAMRAFKGLYK  298 (349)
Q Consensus       280 ~Gn~a~~v~GhR~~~G~~k  298 (349)
                      .++|+..|.-.|.+.|+..
T Consensus       365 ~StfS~~I~~eR~~~G~~~  383 (408)
T 4ap5_A          365 VSTFSFRIHEEREILGLDP  383 (408)
T ss_dssp             TCHHHHHHHHHHHHHTBCG
T ss_pred             cCchhHHHHHHHHhcCCCC
Confidence            9999999999999999764



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00