Citrus Sinensis ID: 018924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKAH
Secondary Structure (PSIPRED)
ccccHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqkmrdlglaRTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEngitydrytyctrlsayadasdheGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYgkygkkddVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAlcydtripnFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFkdegdiggAENFIELlndkgfiptdlqDKLLDNVQNGKSNLETLRELYgnslagneetlsgpegdtsdlieekah
Flexible Loop (DISEMBL)
mqkmrdlglartTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEqikgakvnsayNVILTLYgkygkkddVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLvnheklkgreiHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSlagneetlsgpegdtsdlieekah
Low Complexity Region (SEG)
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKAH
Disordered region (IsUnstruct)
******LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNV*****************************************
Disordered Region (DISOPRED)
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEE*A*
Disordered Region (DISEMBL)
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKAH
Disordered Region (DISPRO)
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLxxxxxxxxxxxxxxxxxxxxxSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9SKU6	490	Pentatricopeptide repeat-	yes	no	0.851	0.606	0.418	5e-64
O22714	491	Pentatricopeptide repeat-	no	no	0.945	0.672	0.332	2e-46
Q84JR3	492	Pentatricopeptide repeat-	no	no	0.908	0.644	0.315	7e-44
Q8LPS6	524	Pentatricopeptide repeat-	no	no	0.851	0.566	0.322	1e-42
Q3E911	491	Pentatricopeptide repeat-	no	no	0.888	0.631	0.309	7e-37
Q9C7F1	566	Putative pentatricopeptid	no	no	0.638	0.393	0.383	1e-36
Q9SY07	532	Pentatricopeptide repeat-	no	no	0.856	0.562	0.287	2e-29
Q9FZ24	537	Pentatricopeptide repeat-	no	no	0.816	0.530	0.289	2e-28
Q93WC5	502	Pentatricopeptide repeat-	no	no	0.822	0.571	0.300	1e-27
Q9C977	596	Pentatricopeptide repeat-	no	no	0.813	0.476	0.259	5e-15

>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 181/299 (60%), Gaps = 2/299 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
            Q+M++LG  +  + YN ML LY +TG +  ++ L+ EME+  +  D +T  TRL AY+ 
Sbjct: 162 FQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSV 221

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            SD EG++K L   EAD  + LDW  YA   NGY K GL +KAL ML+KSE+ +   K  
Sbjct: 222 VSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRK 281

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            AY V+++ YG  GKK++V R+W LYK+     N GY +VIS+LLK+DD+E  EKI EEW
Sbjct: 282 HAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW 341

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           E+    +D RIP+ LI  YC+ G++EKAE +VN    K R     +W  LA GY+   ++
Sbjct: 342 EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKM 401

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
            KAVE  K+ +   +    W+P    L +C+DY + + D+ G    + LL+++G I  D
Sbjct: 402 EKAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 458

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 188/337 (55%), Gaps = 7/337 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           + KM++L +  +++ YNS++ LY KTG  EK+ +++ E++   +  D YTY   + A A 
Sbjct: 146 LNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAA 205

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            +D  G+++++  M  D  VA DW  Y+ + + Y   GL  KA   L+  E ++K  + +
Sbjct: 206 TNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQ--ELEMKNTQRD 263

Query: 121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFE 178
            +AY  ++TLYG+ GK  +V RIW   + A+ K  N  Y N+I  L+KL+DL  AE +F+
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323

Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
           EW++    YD RI N LI  Y + GL++KA  L      +G +++ K+W      Y ++ 
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383

Query: 239 QIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFI 296
            + +A+E M K ++  +    KW PS E++ A + YF+ + D+ GAEN +E+L N    I
Sbjct: 384 DMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNI 443

Query: 297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
             ++ + L+      GKS+    R L   ++  NE T
Sbjct: 444 GAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEAT 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1

 Score =  177 bits (450), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 3/320 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
            +KM+++G   +++ YN+++ LY   G  EK+  ++ EM+E  +  D Y+Y   ++A+  
Sbjct: 149 FEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGA 208

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
             D E I   L  ME   ++ +DW  YA     Y   G  D+A+ +LK SE +++  K  
Sbjct: 209 MYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLE-KKDG 267

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEE 179
             YN ++TLY + GKK +VLR+W+L K   K  +N  Y  V+ SL+K+D L  AE++  E
Sbjct: 268 EGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTE 327

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           W+S   CYD R+PN +I  Y    + EKAE ++     +G+    +SW  +AT Y +   
Sbjct: 328 WKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGT 387

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
           +  A + MK  L       KW+P +  + + L +  DEG +   E+F+  L +   +   
Sbjct: 388 LENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ 447

Query: 300 LQDKLLD-NVQNGKSNLETL 318
           +   L+  +++ G  N++TL
Sbjct: 448 MYHALVKADIREGGRNIDTL 467

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           +  MRD G A   + +N M+ LY     ++K+D+++ EM++  I  D Y+Y   LS+   
Sbjct: 192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
               E ++ +   M++D ++  +W  ++T+   Y K+G  +KA   L+K E +I G +  
Sbjct: 252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG-RNR 310

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
             Y+ +L+LYG  G K ++ R+W +YK  V  + N GY  ++SSL+++ D+E AEK++EE
Sbjct: 311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           W      YD RIPN L++ Y +N  LE AE L +H    G +    +W  LA G+ +   
Sbjct: 371 WLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRC 430

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
           I +A+  ++   +A +    W+P V  L+      ++E D+   E  +ELL   G    D
Sbjct: 431 ISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----D 485

Query: 300 LQDK 303
           L+DK
Sbjct: 486 LEDK 489

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 161/313 (51%), Gaps = 3/313 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           M+K+  LG   T   +N M+KLY  +G +EK+  ++  M+ N I  +  +Y   ++A  +
Sbjct: 166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            S    ++ +   M  D +V + W    T+ N Y K G  +KA  +L+ +E+ +  +   
Sbjct: 226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSN-R 284

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
             Y  ++TLY   G K+ V+R+WE+ K    ++    Y  V+SSL+K  DLE AE++F E
Sbjct: 285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           WE+Q   YD R+ N L+  Y RNG + KAE+L      +G   + K+W  L  G+ +   
Sbjct: 345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCEN 404

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
           + KA++AM +V    +    W+PS   + A  +YF+ E  I  A  ++  L+  G     
Sbjct: 405 MEKAIDAMHQVFVLMRR-CHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLP 463

Query: 300 LQDKLLDNVQNGK 312
           L   LL   ++ K
Sbjct: 464 LYRLLLRMHEHAK 476

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
            QKMRDLGL    V YN+M+ LY    N EK++ L+ EM++N +  D  T    L  Y+ 
Sbjct: 161 FQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSA 220

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
             D   ++K L   E    + L+W     +   Y +     KA+ ML+ +E+ +    + 
Sbjct: 221 VCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLK 280

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
           SAY+ ++ LYG+ G +++VLR+W+LYK  + +  NNGYR VI SLLK+DD+  AE+I++ 
Sbjct: 281 SAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKV 340

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
           WES  L +D RIP  L   Y   G+ EKAE L+N + +K R ++
Sbjct: 341 WESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
            +KM + G  ++ + YN ML +Y   G FEK+  L+ E++    + D  TY   L+A+A 
Sbjct: 185 FEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFAS 243

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            +D EG +K+  +   +  +  DWV Y+ + N Y K   ++KA   LK+ E+ +   K  
Sbjct: 244 GNDVEGAEKVY-LKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLV-SKKNR 301

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEE 179
            AY  +++L+   G KD V   W+  K + K +N+  Y ++IS+++KL + E A+ +++E
Sbjct: 302 VAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           WES +   D RIPN ++  Y     +   E        KG      +W  L   Y +   
Sbjct: 362 WESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKD 421

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
           + K ++   K   A  ++ KW  +V  +       +++G++ GAE  + LL   G++ T 
Sbjct: 422 MEKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQ 478

Query: 300 LQDKLL 305
           L + LL
Sbjct: 479 LYNSLL 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 4   MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
           M +L     ++ +N+M+ +Y +    EK+  L+  M++ GI+    TY   + +    +D
Sbjct: 198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLND 257

Query: 64  HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
            +G++KI+  M  D      W  ++ +   Y K GL +KA + LK  EE++     +S +
Sbjct: 258 LDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDS-H 316

Query: 124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
           + +++LY    K  +V R+WE  KKA   +NN  Y  ++ ++ KL DL+  +KIF EWES
Sbjct: 317 HFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWES 376

Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
           +   YD R+ N  I+ Y +  + E+AE +++    K +    K+   L     +N    K
Sbjct: 377 KCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEND---K 433

Query: 243 AVEAMKKVLAAYQTLV----KWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
           A  AMK + AA         +W  S E ++    +F+   D+ GAE+F ++L++
Sbjct: 434 ADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 6/293 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
            + M DL     ++ +N+++ +Y   G  EK+ +L+  M+E  IT    TY   + +   
Sbjct: 163 FENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGS 222

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
             D +G++K+L  M+A+      W  +A +   Y KVGL  KA   LK  E  +    V 
Sbjct: 223 LKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNM-NPDVR 281

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
             Y+ ++ LY       +V R+W+L KK    +NN  Y  ++ +L KLDD++  +K+F E
Sbjct: 282 DCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAE 341

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           WES    YD R+ N  I  Y +  + E+AE + N    K +    K+   L     +N Q
Sbjct: 342 WESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQ 401

Query: 240 IHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLN 291
              A  A+K   AA     K W  S E +++   +F++  D+ GAE F + L 
Sbjct: 402 ---ADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLT 451

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 3   KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS 62
           KM+DLG   +    + ML L +K  + +K+  ++  ME+  I     TY   +      +
Sbjct: 254 KMKDLGFPLSGFTCDQML-LLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATN 312

Query: 63  DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSA 122
           D  G+++IL  M+ D  V LD+   A     Y   GL DKA  +LK+ E +   A    A
Sbjct: 313 DISGMEQILETMK-DEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEAN-RRA 370

Query: 123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES 182
           +  +L++Y   G++D+V RIW++ +   K         I +  KL+ ++ AE IFE+   
Sbjct: 371 FKDLLSIYASLGREDEVKRIWKICES--KPYFEESLAAIQAFGKLNKVQEAEAIFEKIVK 428

Query: 183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
                 +   + L+ VY  + +L K ++LV      G  I   +W  L   Y +  ++ K
Sbjct: 429 MDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEK 488

Query: 243 AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF 295
           A   + K      T    K  + S    +D +   GD+   E     + + G+
Sbjct: 489 ADSLLDKASKQSHT----KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGY 537

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224138182	516	predicted protein [Populus trichocarpa]	0.965	0.653	0.536	2e-96
224138178	505	predicted protein [Populus trichocarpa]	0.922	0.637	0.535	1e-91
359497206	494	PREDICTED: pentatricopeptide repeat-cont	0.922	0.651	0.506	6e-87
225446335	499	PREDICTED: pentatricopeptide repeat-cont	0.911	0.637	0.470	5e-76
147775992	499	hypothetical protein VITISV_024964 [Viti	0.911	0.637	0.464	2e-74
255553771	504	pentatricopeptide repeat-containing prot	0.816	0.565	0.489	1e-73
449523946	461	PREDICTED: pentatricopeptide repeat-cont	0.822	0.622	0.482	8e-72
449438086	486	PREDICTED: pentatricopeptide repeat-cont	0.919	0.660	0.436	4e-71
449479000	493	PREDICTED: pentatricopeptide repeat-cont	0.936	0.663	0.429	8e-68
449438490	334	PREDICTED: pentatricopeptide repeat-cont	0.919	0.961	0.430	9e-68

>gi|224138182|ref|XP_002322750.1| predicted protein [Populus trichocarpa] gi|222867380|gb|EEF04511.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 183/341 (53%), Positives = 232/341 (68%), Gaps = 4/341 (1%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQ+MR+LG AR  +V+  ML LYYKTGN EKLD LM EMEENGI++D++ YC RLS+YA 
Sbjct: 170 MQRMRELGFARKPLVFTVMLNLYYKTGNTEKLDPLMREMEENGISFDKFAYCIRLSSYAA 229

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           ASD EG++K L  +E+DPNV LDW  YATV NGY KVGLLDKAL MLK+ E  I G + +
Sbjct: 230 ASDSEGLEKTLKRIESDPNVVLDWATYATVANGYSKVGLLDKALEMLKRCERLITGERRS 289

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
           + Y+ ++T Y   G K+DVLR+WEL+K+ V   N    +VI+SLLK DDLESAEKIFEEW
Sbjct: 290 TPYDYLMTQYATTGTKEDVLRVWELHKRYVG--NRKNISVITSLLKFDDLESAEKIFEEW 347

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           ESQ LC D  IPNFL+D Y R GLLEKAE L+      G + +  +WY LA GY Q++Q 
Sbjct: 348 ESQKLCDDIIIPNFLVDAYSRKGLLEKAEMLLQRTMSNGTKPNANTWYLLAKGYLQHNQT 407

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
            KAVEAMK+++    +  + +PS  S  ACL + KD GD+  AE FI LL +K  I  D+
Sbjct: 408 PKAVEAMKEMIVL--SGPRSRPSTVSWVACLQHLKDSGDMDNAEGFINLLREKDIISLDI 465

Query: 301 QDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGDTS 341
           QDKLL  +++  S L+ L  L G+SL G   T   P  D +
Sbjct: 466 QDKLLSYIKDRDSRLDALSALKGSSLHGISVTHEIPRPDQA 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa] gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 174/325 (53%), Positives = 224/325 (68%), Gaps = 3/325 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           +Q+M+ LG A T +VYN +L  YY+TGN +K++SLM EME+NGI  D++ +  +LSAYA 
Sbjct: 183 VQEMKSLGFANTLLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQLSAYAS 242

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            SD  GI+K L  ME+DPNV LDW  Y     GY KVGL+DKAL ML+KSE  + G +  
Sbjct: 243 VSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYIKVGLVDKALEMLEKSERLVTGKRRG 302

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
           +AY+ ++TLY   GK ++VLRIWELYKK  KV    Y ++I+SLLKLDD E+AEKIFEEW
Sbjct: 303 TAYDSLITLYAATGKTNEVLRIWELYKKNEKVYKEAYISIITSLLKLDDFENAEKIFEEW 362

Query: 181 ESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           E Q   CYD  IPNFLID Y R GL+EKAE L++    KG E + K+WY+LATGY QN Q
Sbjct: 363 EFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLIDRAISKGGEPNAKTWYHLATGYLQNGQ 422

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
             KAVEAMKK +     +  WKPS E LA CL Y K EGD+G   NF++LL D   I  D
Sbjct: 423 TLKAVEAMKKAVVVSGRM--WKPSNEILANCLGYLKVEGDLGKLTNFMDLLRDNDIISLD 480

Query: 300 LQDKLLDNVQNGKSNLETLRELYGN 324
           +Q++LL++++N KS+ + L  L  N
Sbjct: 481 IQERLLNHIKNAKSSSDVLGALNNN 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497206|ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Vitis vinifera]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 164/324 (50%), Positives = 217/324 (66%), Gaps = 2/324 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQ++RDLG  RT + YN+++ +YY+ GN+EKLD LMHEMEE GI  D++T   RLSAYA 
Sbjct: 172 MQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEEKGIFCDKFTLAIRLSAYAA 231

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           AS+  GID I+T ME+DP + LDW  YA V +GY KVGL+DK L M+KK EE I     N
Sbjct: 232 ASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEELIDAKGSN 291

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            A++ +L LY +  ++D++ R+W LYKK  K+ N GY  +ISSLLK DD+++AEK+ EEW
Sbjct: 292 VAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAAEKVLEEW 351

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           ES+ L YD R+PNFLID YCR GL EKAE LVN    KG    V +W+YLA GY ++SQI
Sbjct: 352 ESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGGNPLVDTWFYLANGYLEDSQI 411

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
            KAVEA+KK +        WKPS  +LA CL+Y +   D+ GA  FI  L ++G     +
Sbjct: 412 PKAVEALKKAVVVCPP--NWKPSKNTLATCLEYLEGNRDVEGAGEFIRFLQNEGIFSVGV 469

Query: 301 QDKLLDNVQNGKSNLETLRELYGN 324
             +LL  ++NGK     L E+ G+
Sbjct: 470 CKRLLSYIENGKPQPNRLGEIEGD 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446335|ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Vitis vinifera]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 151/321 (47%), Positives = 203/321 (63%), Gaps = 3/321 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQ+MRD+G  +T + YN ML LY + G  EKLD+LM EMEENGI  D +TYC RL+AY  
Sbjct: 159 MQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCA 217

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            SD EG++K+L  +E DP V  DW  Y    NGY K  L +KA+ MLKKSE+ I G    
Sbjct: 218 TSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRR 277

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
             Y ++LTLY   G K +V RIW LYK   K  N GY  ++SSLLKLDD++ AEK FEEW
Sbjct: 278 FGYEILLTLYATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEW 337

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
            S    +D R+PN LI  YC+ GLLEKAE LV+    +G E    +W  LA GY +N+Q+
Sbjct: 338 LSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQM 397

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
            KAV+ +KK L A  T   WKP+  +L+ACL+Y K +GD+  AEN I LL ++  +    
Sbjct: 398 EKAVDTLKKALLA--TSQGWKPNPVTLSACLEYLKGKGDVEEAENLIRLLREQSLVSAYD 455

Query: 301 QDKLLDNVQNGKSNLETLREL 321
            D+L++ +++ +    T+ ++
Sbjct: 456 SDRLVNYIRSEEPGSSTIAQM 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775992|emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/321 (46%), Positives = 201/321 (62%), Gaps = 3/321 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQ+MRD+G  +T + YN ML LY + G  EKLD+LM EMEENGI  D +TYC RL+AY  
Sbjct: 159 MQEMRDMGFVKT-LSYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCA 217

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
            SD EG++K+L  +E DP V  DW  Y    NGY K  L +KA+ MLKKSE+ I G    
Sbjct: 218 TSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQFISGRSRR 277

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
             Y ++LTLY   G K +  RIW LYK   K  N GY  ++SSLLKLDD++ AEK FEEW
Sbjct: 278 FGYEILLTLYATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGAEKTFEEW 337

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
            S    +D R+PN LI  YC+ GLLEKAE LV+    +G E    +W  LA GY +N+Q+
Sbjct: 338 LSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAGYHENNQM 397

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
            KAV+ +KK L A  T   WKP+  +L+ACL+Y K + D+  AEN I LL ++  +    
Sbjct: 398 EKAVDTLKKALLA--TSQGWKPNPVTLSACLEYLKGKXDVEEAENLIRLLREQSLVSAYD 455

Query: 301 QDKLLDNVQNGKSNLETLREL 321
            D+L++ +++ +    T+ ++
Sbjct: 456 SDRLVNYIRSEEPGSSTIAQM 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553771|ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542908|gb|EEF44444.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/290 (48%), Positives = 193/290 (66%), Gaps = 5/290 (1%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQKM+DLG  + ++ YN ML LY   GN+EKLD L+ EMEENGI+ DR TYC RL+A  +
Sbjct: 163 MQKMKDLGFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRLNACVN 222

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           +SD EG++K+L  ME DPN+++ +  Y    NGY K GL+DK L MLK+SE+ I G    
Sbjct: 223 SSDIEGMEKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLISGNTRR 282

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            AY  +LTLY   G K +V RIW  YK+  +  N+GY  +ISSLLKLDD++ AE+IFEEW
Sbjct: 283 FAYEFLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAERIFEEW 342

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           +S+ + +D RIPN +++VY R G LEKAE  +N     G E    SW +LA GY  + Q+
Sbjct: 343 DSKKVLFDIRIPNSMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAAGYHSSGQM 402

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL 290
            KAVE ++K ++  +    WKPS+ +L+ACL++ K +GD   AE   ELL
Sbjct: 403 TKAVETIRKAISVSKP--GWKPSLLTLSACLEFLKGQGD---AETLEELL 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523946|ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  276 bits (707), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 142/294 (48%), Positives = 199/294 (67%), Gaps = 7/294 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQK++++G A + + YN M+ LY++ G FE+LDSL+ EM+E G+ YDR+TY  R+SAYA 
Sbjct: 153 MQKIKEMGFANSPLPYNIMMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYAA 212

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           ASD  GI+KI+  ME++P++ LDW  Y    N Y KVGL+DK+++MLKKSE  +   K  
Sbjct: 213 ASDFRGIEKIMEQMESNPSIVLDWNCYVIAANAYNKVGLIDKSISMLKKSEGLLANVKKK 272

Query: 121 S-AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
             A+NV L LY + GKKD++ RIW LYKK  K+ N G+ ++I+SLL LDD++ AE+I++E
Sbjct: 273 GFAFNVYLKLYARNGKKDEIHRIWNLYKKE-KIFNKGFISMITSLLILDDIKGAERIYKE 331

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
           WE++ L YD RIPN L+D YCR GL+EKAE L+N   +  R+  V+SW YLA+GY Q  Q
Sbjct: 332 WETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVESWCYLASGYLQKDQ 391

Query: 240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK 293
           + +AVE +K  LAA     +     E LAA LD    + D+   E  + LL +K
Sbjct: 392 LPQAVETLK--LAASVCPSRLNYVKEILAAFLD---GKQDVEETEKVVNLLREK 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438086|ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/323 (43%), Positives = 204/323 (63%), Gaps = 2/323 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQKMR++G  +T + YN+ML LY + G  EKLD L+ EMEE GI ++R+TY  R++AYA 
Sbjct: 160 MQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNVRMNAYAA 219

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           ASD   ++K+L+ MEADP VA DW IY TVGNGY K GL + +++MLKK+E+ I   +  
Sbjct: 220 ASDITNMEKLLSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQLIGDKQKW 279

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            AY  ++TLY   G KD+V R+W LY    K  N+GY  +ISSL+KLDD++ AE+I +EW
Sbjct: 280 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEW 339

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           ES    +D +IPN +I+ YC  G ++KAE  ++     G+E    +W  LA+GY  N   
Sbjct: 340 ESGDTSFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASGYHSNGLT 399

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
           +KA E +KK ++   +  +WKP+ + LAACL+Y K  G++  AE  I LL  +   P ++
Sbjct: 400 NKAAETLKKAISV--SPPRWKPNYDILAACLEYLKTNGNVELAEEIIGLLCKRDIFPLNI 457

Query: 301 QDKLLDNVQNGKSNLETLRELYG 323
             +L D + +   N     +L G
Sbjct: 458 CKRLEDYIHSENQNSIKCLDLLG 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479000|ref|XP_004155477.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/331 (42%), Positives = 197/331 (59%), Gaps = 4/331 (1%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQKMR++G  +T + YN+ML LY   G  EKL  L+ EMEE GI  DR+TY  R++AYA 
Sbjct: 160 MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 219

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           ASD   ++K+L+ MEADP VA DW  Y  VGNGY K GL + ++ MLKK+E+ I   +  
Sbjct: 220 ASDITNMEKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKW 279

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            AY  ++TLY   G KD+V R+W LY    K  N+GY  +ISSL+KLDD++ AE+I +EW
Sbjct: 280 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLRKRFNSGYLCIISSLMKLDDIDGAERILKEW 339

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           ES    +D RIPN +I+ YC  G ++KAE  +N     G+E    +W  LA+GY  N   
Sbjct: 340 ESGDTSFDFRIPNMMINSYCMKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHSNGLT 399

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
           +K  E +KK ++   +   WKP    LAACL+Y K   ++  AE  I LL  +   P ++
Sbjct: 400 NKVAETLKKAISV--SPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLLCKRDIFPLNI 457

Query: 301 QDKLLDNVQNGKSNLETLRELYGNSLAGNEE 331
             +L D +++   N     +L G  L G  E
Sbjct: 458 CKRLEDYIRSENQNSIKCLDLLG--LKGQNE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438490|ref|XP_004137021.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis sativus]

 Score =  263 bits (672), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 194/323 (60%), Gaps = 2/323 (0%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           MQKMR++G  +T + YN+ML LY   G  EKL  L+ EMEE GI  DR+TY  R++AYA 
Sbjct: 1   MQKMREVGFMKTPLSYNAMLNLYAHLGKHEKLAELLKEMEEMGIGPDRFTYNIRMNAYAA 60

Query: 61  ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           ASD   ++K+L+ MEADP VA DW  Y  VGNGY K GL + ++ MLKK+E+ I   +  
Sbjct: 61  ASDITNMEKLLSKMEADPLVATDWHTYFVVGNGYFKAGLSENSILMLKKAEQFIGDKQKW 120

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW 180
            AY  ++TLY   G KD+V R+W LY    K  N+GY  +ISSL+KLDD++ AE+I +EW
Sbjct: 121 LAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGAERILKEW 180

Query: 181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
           ES    +D RIPN +I+ YC  G ++KAE  +N     G+E    +W  LA+GY  N   
Sbjct: 181 ESGDTSFDFRIPNMMINSYCTKGFVDKAEAYINRLIETGKEPEANTWDLLASGYHSNGLT 240

Query: 241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
           +K  E +KK ++   +   WKP    LAACL+Y K   ++  AE  I LL  +   P ++
Sbjct: 241 NKVAETLKKAISV--SPPHWKPKYHILAACLEYLKTNENVDLAEEIIGLLCKRDIFPLNI 298

Query: 301 QDKLLDNVQNGKSNLETLRELYG 323
             +L D +++   N     +L G
Sbjct: 299 CKRLEDYIRSENQNSIKCLDLLG 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2051379	490	AT2G20710 [Arabidopsis thalian	0.848	0.604	0.419	1e-61
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.945	0.672	0.332	2.9e-48
TAIR|locus:504955535	492	AT4G21705 "AT4G21705" [Arabido	0.945	0.670	0.311	7.9e-46
TAIR|locus:2204793	524	AT1G02150 [Arabidopsis thalian	0.851	0.566	0.322	9.3e-43
TAIR|locus:2010459	566	AT1G28020 "AT1G28020" [Arabido	0.636	0.392	0.385	8.9e-38
TAIR|locus:2146390	491	AT5G27460 "AT5G27460" [Arabido	0.888	0.631	0.309	8.9e-38
TAIR|locus:2140220	532	AT4G02820 "AT4G02820" [Arabido	0.931	0.610	0.279	3.6e-34
TAIR|locus:2204808	537	AT1G02370 "AT1G02370" [Arabido	0.825	0.536	0.271	7.2e-31
TAIR|locus:2141360	502	AT4G01990 [Arabidopsis thalian	0.934	0.649	0.282	8.5e-31
TAIR|locus:2074668	541	AT3G11380 "AT3G11380" [Arabido	0.550	0.354	0.342	3.3e-22

TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 125/298 (41%), Positives = 181/298 (60%)

Query:     2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
             Q+M++LG  +  + YN ML LY +TG +  ++ L+ EME+  +  D +T  TRL AY+  
Sbjct:   163 QEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVV 222

Query:    62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
             SD EG++K L   EAD  + LDW  YA   NGY K GL +KAL ML+KSE+ +   K   
Sbjct:   223 SDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKH 282

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE 181
             AY V+++ YG  GKK++V R+W LYK+     N GY +VIS+LLK+DD+E  EKI EEWE
Sbjct:   283 AYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWE 342

Query:   182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH 241
             +    +D RIP+ LI  YC+ G++EKAE +VN    K R     +W  LA GY+   ++ 
Sbjct:   343 AGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKME 402

Query:   242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
             KAVE  K+ +   +    W+P    L +C+DY + + D+ G    + LL+++G I  D
Sbjct:   403 KAVEKWKRAIEVSKP--GWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHISYD 458

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 112/337 (33%), Positives = 188/337 (55%)

Query:     1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
             + KM++L +  +++ YNS++ LY KTG  EK+ +++ E++   +  D YTY   + A A 
Sbjct:   146 LNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAA 205

Query:    61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
              +D  G+++++  M  D  VA DW  Y+ + + Y   GL  KA   L++ E  +K  + +
Sbjct:   206 TNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELE--MKNTQRD 263

Query:   121 -SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFE 178
              +AY  ++TLYG+ GK  +V RIW   + A+ K  N  Y N+I  L+KL+DL  AE +F+
Sbjct:   264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323

Query:   179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS 238
             EW++    YD RI N LI  Y + GL++KA  L      +G +++ K+W      Y ++ 
Sbjct:   324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383

Query:   239 QIHKAVEAMKKVLAAYQ-TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL-NDKGFI 296
              + +A+E M K ++  +    KW PS E++ A + YF+ + D+ GAEN +E+L N    I
Sbjct:   384 DMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNI 443

Query:   297 PTDLQDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
               ++ + L+      GKS+    R L   ++  NE T
Sbjct:   444 GAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEAT 480

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 104/334 (31%), Positives = 179/334 (53%)

Query:     2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
             +KM+++G   +++ YN+++ LY   G  EK+  ++ EM+E  +  D Y+Y   ++A+   
Sbjct:   150 EKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAM 209

Query:    62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
              D E I   L  ME   ++ +DW  YA     Y   G  D+A+ +LK SE +++  K   
Sbjct:   210 YDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLE-KKDGE 268

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEW 180
              YN ++TLY + GKK +VLR+W+L K   K  +N  Y  V+ SL+K+D L  AE++  EW
Sbjct:   269 GYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEW 328

Query:   181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
             +S   CYD R+PN +I  Y    + EKAE ++     +G+    +SW  +AT Y +   +
Sbjct:   329 KSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTL 388

Query:   241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
               A + MK  L       KW+P +  + + L +  DEG +   E+F+  L +   +   +
Sbjct:   389 ENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQM 448

Query:   301 QDKLLD-NVQNGKSNLETL-RELYGNSLAGNEET 332
                L+  +++ G  N++TL + +  + +  +EET
Sbjct:   449 YHALVKADIREGGRNIDTLLQRMKDDKIEIDEET 482

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 98/304 (32%), Positives = 164/304 (53%)

Query:     1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
             +  MRD G A   + +N M+ LY     ++K+D+++ EM++  I  D Y+Y   LS+   
Sbjct:   192 LNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGS 251

Query:    61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
                 E ++ +   M++D ++  +W  ++T+   Y K+G  +KA   L+K E +I G    
Sbjct:   252 LGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRN-R 310

Query:   121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
               Y+ +L+LYG  G K ++ R+W +YK  V  + N GY  ++SSL+++ D+E AEK++EE
Sbjct:   311 IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370

Query:   180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
             W      YD RIPN L++ Y +N  LE AE L +H    G +    +W  LA G+ +   
Sbjct:   371 WLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRC 430

Query:   240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
             I +A+  ++   +A +    W+P V  L+      ++E D+   E  +ELL   G    D
Sbjct:   431 ISEALTCLRNAFSA-EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSG----D 485

Query:   300 LQDK 303
             L+DK
Sbjct:   486 LEDK 489

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 86/223 (38%), Positives = 129/223 (57%)

Query:     2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
             QKMRDLGL    V YN+M+ LY    N EK++ L+ EM++N +  D  T    L  Y+  
Sbjct:   162 QKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAV 221

Query:    62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
              D   ++K L   E    + L+W     +   Y +     KA+ ML+ +E+ +    + S
Sbjct:   222 CDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKS 281

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDDLESAEKIFEEW 180
             AY+ ++ LYG+ G +++VLR+W+LYK  +    NNGYR VI SLLK+DD+  AE+I++ W
Sbjct:   282 AYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVW 341

Query:   181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH 223
             ES  L +D RIP  L   Y   G+ EKAE L+N + +K R ++
Sbjct:   342 ESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMN 384

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 97/313 (30%), Positives = 161/313 (51%)

Query:     1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
             M+K+  LG   T   +N M+KLY  +G +EK+  ++  M+ N I  +  +Y   ++A  +
Sbjct:   166 MEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCE 225

Query:    61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
              S    ++ +   M  D +V + W    T+ N Y K G  +KA  +L+ +E+ +  +   
Sbjct:   226 VSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSN-R 284

Query:   121 SAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDLESAEKIFEE 179
               Y  ++TLY   G K+ V+R+WE+ K    ++    Y  V+SSL+K  DLE AE++F E
Sbjct:   285 LGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSE 344

Query:   180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ 239
             WE+Q   YD R+ N L+  Y RNG + KAE+L      +G   + K+W  L  G+ +   
Sbjct:   345 WEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCEN 404

Query:   240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
             + KA++AM +V    +    W+PS   + A  +YF+ E  I  A  ++  L+  G     
Sbjct:   405 MEKAIDAMHQVFVLMRRC-HWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLP 463

Query:   300 LQDKLLDNVQNGK 312
             L   LL   ++ K
Sbjct:   464 LYRLLLRMHEHAK 476

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 93/333 (27%), Positives = 166/333 (49%)

Query:     2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
             +KM + G  ++ + YN ML +Y   G FEK+  L+ E++    + D  TY   L+A+A  
Sbjct:   186 EKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFASG 244

Query:    62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
             +D EG +K+  +   +  +  DWV Y+ + N Y K   ++KA   LK+ E+ +   K   
Sbjct:   245 NDVEGAEKVY-LKAKEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVS-KKNRV 302

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEW 180
             AY  +++L+   G KD V   W+  K + K +N+  Y ++IS+++KL + E A+ +++EW
Sbjct:   303 AYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEW 362

Query:   181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
             ES +   D RIPN ++  Y     +   E        KG      +W  L   Y +   +
Sbjct:   363 ESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDM 422

Query:   241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL 300
              K ++   K   A  ++ KW  +V  +       +++G++ GAE  + LL   G++ T L
Sbjct:   423 EKVLDCFGK---AIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQL 479

Query:   301 QDKLLDN-VQNGKSNLETLRELYGNSLAGNEET 332
              + LL    + G+  L     +  +++  +EET
Sbjct:   480 YNSLLRTYAKAGEMALIVEERMAKDNVELDEET 512

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 7.2e-31, P = 7.2e-31
 Identities = 79/291 (27%), Positives = 153/291 (52%)

Query:     4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD 63
             M +L     ++ +N+M+ +Y +    EK+  L+  M++ GI+    TY   + +    +D
Sbjct:   198 MDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLND 257

Query:    64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY 123
              +G++KI+  M  D      W  ++ +   Y K GL +KA + LK  EE++     +S +
Sbjct:   258 LDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDS-H 316

Query:   124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEEWES 182
             + +++LY    K  +V R+WE  KKA   +NN  Y  ++ ++ KL DL+  +KIF EWES
Sbjct:   317 HFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWES 376

Query:   183 QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK 242
             +   YD R+ N  I+ Y +  + E+AE +++    K +    K+   L     +N +   
Sbjct:   377 KCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADL 436

Query:   243 AVEAMKKVLA-AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND 292
             A++ ++  ++ + +   +W  S E ++    +F+   D+ GAE+F ++L++
Sbjct:   437 AMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN 487

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 8.5e-31, P = 8.5e-31
 Identities = 94/333 (28%), Positives = 158/333 (47%)

Query:     2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA 61
             + M DL     ++ +N+++ +Y   G  EK+ +L+  M+E  IT    TY   + +    
Sbjct:   164 ENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSL 223

Query:    62 SDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS 121
              D +G++K+L  M+A+      W  +A +   Y KVGL  KA   LK  E  +    V  
Sbjct:   224 KDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMN-PDVRD 282

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESAEKIFEEW 180
              Y+ ++ LY       +V R+W+L KK    +NN  Y  ++ +L KLDD++  +K+F EW
Sbjct:   283 CYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEW 342

Query:   181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI 240
             ES    YD R+ N  I  Y +  + E+AE + N    K +    K+   L     +N Q 
Sbjct:   343 ESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQ- 401

Query:   241 HKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD 299
               A  A+K   AA     K W  S E +++   +F++  D+ GAE F + L     + ++
Sbjct:   402 --ADLALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLSSE 459

Query:   300 LQDKLLDN-VQNGKSNLETLRELYGNSLAGNEE 331
                 L+   +  GK+  +  + L    +  +EE
Sbjct:   460 TYTLLMKTYLAAGKACPDMKKRLEEQGILVDEE 492

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2074668 AT3G11380 "AT3G11380" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 73/213 (34%), Positives = 120/213 (56%)

Query:    15 VYNSMLKLYYK-TGN--FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKIL 71
             +YNS+L+ Y + +G    +K +S+  +M++ G+      Y +  S Y+   + + +D+IL
Sbjct:   145 MYNSLLRSYARQSGEKALKKAESVFKKMKKLGLLLRPSPYNSMTSLYSSLGNRDKVDEIL 204

Query:    72 TMMEADPNVALDWV-------IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--- 121
               M+ + NV LD V       +YA V +    V  +DK LA  +K   ++ G  + +   
Sbjct:   205 REMKEN-NVELDNVTVNNALRVYAAVSD----VATMDKFLAD-RKEITRLDGLTMLAMAK 258

Query:   122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF-EEW 180
             AY  +++LYG+ G+ +DV R+W+ YK   +  N  +R +I SLLKL D + AEKI+  EW
Sbjct:   259 AYE-LMSLYGEAGEIEDVHRVWDKYKATRQKDNEEFRTLIGSLLKLGDTKGAEKIYYNEW 317

Query:   181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN 213
             E   L +D RIP+ L+  Y   G++ KA+ LVN
Sbjct:   318 ECSGLEFDNRIPDMLVSGYREKGMVMKADKLVN 350

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00160564 hypothetical protein (516 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	4e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	8e-04

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
           V YN+++  Y K G  E+   L +EM++ GI  + YTY   +     
Sbjct: 3  VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 44/278 (15%)

Query: 8   GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGI 67
           G A    V NS++++Y   G++ + + +   ME    T D  ++   +S Y      +  
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA 373

Query: 68  DKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL 127
            +   +ME D NV+ D +  A+V +    +G LD  + + + +E +   + V  A N ++
Sbjct: 374 LETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA-NALI 431

Query: 128 TLYGKYGKKDDVLRIWE-LYKKAV---KVLNNGYR------------------------- 158
            +Y K    D  L ++  + +K V     +  G R                         
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVT 491

Query: 159 --NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN-HE 215
               +S+  ++  L   ++I        + +D  +PN L+D+Y R G +  A N  N HE
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551

Query: 216 KLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA 253
           K       V SW  L TGY  + +   AVE   +++ +
Sbjct: 552 K------DVVSWNILLTGYVAHGKGSMAVELFNRMVES 583

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 10  ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDK 69
            R    + +++      GN+ +  +L  EM E+G   +  T+   L A A         +
Sbjct: 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA-GLGSARAGQ 244

Query: 70  ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL 129
            L        V  D  +   + + Y K G ++ A  +     E     K   A+N +L  
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAG 299

Query: 130 YGKYGKKDDVLRIW-ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD 188
           Y  +G  ++ L ++ E+    V +    +  +I    +L  LE A++            D
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359

Query: 189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK 248
                 L+D+Y + G +E A N+   +++  + +   SW  L  GY  + +  KAVE  +
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVF--DRMPRKNL--ISWNALIAGYGNHGRGTKAVEMFE 415

Query: 249 KVLAA 253
           +++A 
Sbjct: 416 RMIAE 420

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 72/297 (24%), Positives = 123/297 (41%), Gaps = 39/297 (13%)

Query: 11  RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTY------CTRLSAYADASD- 63
           +TTV +NSML  Y   G  E+   L +EM ++G++ D++T+       +RL+    A   
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347

Query: 64  HEGIDKILTMMEAD--PNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN 120
           H G+  I T    D   N AL D          Y K G ++ A  +  +        K  
Sbjct: 348 HAGL--IRTGFPLDIVANTALVDL---------YSKWGRMEDARNVFDRMPR-----KNL 391

Query: 121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-GYRNVISSLLKLDDLESAEKIFEE 179
            ++N ++  YG +G+    + ++E         N+  +  V+S+       E   +IF+ 
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451

Query: 180 WESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN 237
             S+      R  ++  +I++  R GLL++A  ++     K     V  W  L T  R  
Sbjct: 452 M-SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT---VNMWAALLTACR-- 505

Query: 238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG 294
             IHK +E  +  LAA +        + +    L+ +   G    A   +E L  KG
Sbjct: 506 --IHKNLELGR--LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD 47
          V YN+++    K G  E+   L  EM+E GI  D
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGI 44
          V YNS++  Y K G  E+   L  EM+E G+
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT 45
             YN++L    K G+ +   +++ EM+ +G+ 
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.92
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.75
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.74
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.66
PRK14574	822	hmsH outer membrane protein; Provisional	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.64
PRK14574	822	hmsH outer membrane protein; Provisional	99.63
KOG2003	840	consensus TPR repeat-containing protein [General f	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.58
PRK12370	553	invasion protein regulator; Provisional	99.58
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.57
PRK12370	553	invasion protein regulator; Provisional	99.57
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.56
PF13041	50	PPR_2: PPR repeat family	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.55
KOG2076	895	consensus RNA polymerase III transcription factor	99.54
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.5
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.48
KOG2076	895	consensus RNA polymerase III transcription factor	99.46
PF13041	50	PPR_2: PPR repeat family	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.44
KOG2003	840	consensus TPR repeat-containing protein [General f	99.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.44
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
PRK11189	296	lipoprotein NlpI; Provisional	99.4
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.31
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.29
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.24
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.19
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.1
PF12854	34	PPR_1: PPR repeat	99.1
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.0
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.96
KOG1125	579	consensus TPR repeat-containing protein [General f	98.95
PF12854	34	PPR_1: PPR repeat	98.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.91
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.91
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.9
PLN02789	320	farnesyltranstransferase	98.9
PLN02789	320	farnesyltranstransferase	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.86
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.82
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.75
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.72
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.72
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.71
PRK04841	903	transcriptional regulator MalT; Provisional	98.7
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.7
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.69
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.68
PRK15359	144	type III secretion system chaperone protein SscB;	98.68
PRK15359	144	type III secretion system chaperone protein SscB;	98.68
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.56
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.56
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.49
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.44
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.36
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.35
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.34
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.29
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.28
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.27
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.27
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.27
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.26
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.25
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.23
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.2
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.18
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.15
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.13
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.05
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.04
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.03
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.99
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.98
KOG0553	304	consensus TPR repeat-containing protein [General f	97.98
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.95
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.89
KOG0553	304	consensus TPR repeat-containing protein [General f	97.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.78
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.73
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.66
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.65
PF12688	120	TPR_5: Tetratrico peptide repeat	97.6
PF12688	120	TPR_5: Tetratrico peptide repeat	97.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.47
PRK10803	263	tol-pal system protein YbgF; Provisional	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PRK10803	263	tol-pal system protein YbgF; Provisional	97.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.35
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.33
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.33
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.24
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.22
PF13371	73	TPR_9: Tetratricopeptide repeat	97.22
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.15
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.13
PF13371	73	TPR_9: Tetratricopeptide repeat	97.05
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.94
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.86
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.84
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.79
PRK15331	165	chaperone protein SicA; Provisional	96.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.71
PRK15331	165	chaperone protein SicA; Provisional	96.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.53
KOG3941	406	consensus Intermediate in Toll signal transduction	96.53
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.5
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.32
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.3
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.3
PRK11906	458	transcriptional regulator; Provisional	96.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.17
KOG3941	406	consensus Intermediate in Toll signal transduction	96.15
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.12
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.01
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.98
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.97
PF13512	142	TPR_18: Tetratricopeptide repeat	95.91
PF13428	44	TPR_14: Tetratricopeptide repeat	95.87
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.74
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.71
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.58
PF13428	44	TPR_14: Tetratricopeptide repeat	95.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.54
KOG4555	175	consensus TPR repeat-containing protein [Function	95.46
KOG4555	175	consensus TPR repeat-containing protein [Function	95.45
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.35
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.31
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.23
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.17
KOG1585	308	consensus Protein required for fusion of vesicles	95.06
PF13512	142	TPR_18: Tetratricopeptide repeat	95.01
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.94
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.85
PRK11906	458	transcriptional regulator; Provisional	94.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.64
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.61
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.46
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.45
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.44
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.44
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.37
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.32
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.29
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.13
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.95
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.86
KOG1585	308	consensus Protein required for fusion of vesicles	93.72
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.31
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.3
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.27
PF13431	34	TPR_17: Tetratricopeptide repeat	93.18
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.02
PF13929	292	mRNA_stabil: mRNA stabilisation	92.72
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.69
PF13431	34	TPR_17: Tetratricopeptide repeat	92.65
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.63
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.49
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	92.34
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.19
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.98
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.27
KOG4234	271	consensus TPR repeat-containing protein [General f	91.25
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.1
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.94
KOG1586	288	consensus Protein required for fusion of vesicles	90.75
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.51
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.18
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.01
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.29
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.82
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.28
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.25
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.98
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.63
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.1
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.24
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.24
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.15
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.88
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	85.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.04
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.2
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	84.0
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.77
PF13934	226	ELYS: Nuclear pore complex assembly	83.51
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	83.34
PF13929	292	mRNA_stabil: mRNA stabilisation	82.95
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	82.93
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.82
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.58
PHA02875	413	ankyrin repeat protein; Provisional	82.57
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.27
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.22
PF07443	55	HARP: HepA-related protein (HARP); InterPro: IPR01	82.21
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.84
COG3947	361	Response regulator containing CheY-like receiver a	81.39
KOG1258	577	consensus mRNA processing protein [RNA processing	81.3
KOG1586	288	consensus Protein required for fusion of vesicles	81.29
PF09477	116	Type_III_YscG: Bacterial type II secretion system	81.2
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	80.75
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	80.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.6
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	80.58
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.52
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.5
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.25
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.21
COG0735	145	Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani	80.17

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.2e-59  Score=429.82  Aligned_cols=331  Identities=17%  Similarity=0.256  Sum_probs=309.8

Q ss_pred             ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924            1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV   80 (349)
Q Consensus         1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~   80 (349)
                      |++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. +.++
T Consensus       460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~-~~Gv  538 (1060)
T PLN03218        460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR-SKNV  538 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCC
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999998 8899


Q ss_pred             CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH--hhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhH
Q 018924           81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEE--QIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGY  157 (349)
Q Consensus        81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~  157 (349)
                      .||..+|+.||.+|++.|++++|.++|++|..  .++.|+. .+|++++.+|++.|++++|.++|+ |...+++|+..+|
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty  617 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY  617 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence            99999999999999999999999999999976  5678888 899999999999999999999999 8888999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.
T Consensus       618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~  697 (1060)
T PLN03218        618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA  697 (1060)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC--cc
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG--KS  313 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g--~~  313 (349)
                      |++++|.++|++|...     ++.||..+|+.+|.+|++.|++++|.++|++|...+. |+..+|+.++ ++++.|  ++
T Consensus       698 G~~eeA~~lf~eM~~~-----g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~  772 (1060)
T PLN03218        698 KNWKKALELYEDIKSI-----KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV  772 (1060)
T ss_pred             CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999887     9999999999999999999999999999999998876 8999999999 999999  89


Q ss_pred             hHHHHHHHHhCCCCCCcccccCCCC
Q 018924          314 NLETLRELYGNSLAGNEETLSGPEG  338 (349)
Q Consensus       314 a~~~~~~m~~~~~~p~~~t~~~~l~  338 (349)
                      |.+++++|.+.|+.||..+|..+++
T Consensus       773 A~~l~~~M~k~Gi~pd~~tynsLIg  797 (1060)
T PLN03218        773 GLDLLSQAKEDGIKPNLVMCRCITG  797 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999999988877664

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.8e-58  Score=423.50  Aligned_cols=321  Identities=13%  Similarity=0.159  Sum_probs=312.1

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. +.|+.||..+|++|
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaL  513 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGAL  513 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999 88999999999999


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHH--hhccCChhhHHHHHHHHhcc
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYK--KAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~--~~~~~~~~~~~~li~~~~~~  167 (349)
                      |.+|++.|++++|.++|++|.+.|+.|+. .+|+.+|.+|++.|++++|.++|+ |..  .++.||..+|+.+|.+|++.
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~  592 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA  592 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999 999999999999999999999999 655  57889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM  247 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  247 (349)
                      |++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      +.|.+.     |+.||..+|+.+|.+|++.|++++|.++|++|...+. |+..+|+.++ +|++.|  ++|.++|++|.+
T Consensus       673 ~eM~k~-----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        673 QDARKQ-----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999998     9999999999999999999999999999999998876 9999999999 999999  999999999999


Q ss_pred             CCCCCCcccccCCCC
Q 018924          324 NSLAGNEETLSGPEG  338 (349)
Q Consensus       324 ~~~~p~~~t~~~~l~  338 (349)
                      .|+.||..||..++.
T Consensus       748 ~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        748 LGLCPNTITYSILLV  762 (1060)
T ss_pred             cCCCCCHHHHHHHHH
Confidence            999999999876653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.7e-52  Score=382.51  Aligned_cols=317  Identities=17%  Similarity=0.211  Sum_probs=270.7

Q ss_pred             hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc-----
Q 018924            2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA-----   76 (349)
Q Consensus         2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----   76 (349)
                      ..|.+.|+.||..+||.|+..|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.++|++|..     
T Consensus       147 ~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p  222 (697)
T PLN03081        147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA  222 (697)
T ss_pred             HHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence            456666666666666666666666666666666666664    25666666666666666666666666666651     


Q ss_pred             -----------------------------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924           77 -----------------------------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL  127 (349)
Q Consensus        77 -----------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  127 (349)
                                                   +.|+.||..+|++|+++|+++|++++|.++|++|.    .++. .+||+++
T Consensus       223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~-vt~n~li  297 (697)
T PLN03081        223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTT-VAWNSML  297 (697)
T ss_pred             ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCCh-hHHHHHH
Confidence                                         33445566667888999999999999999999984    4567 8999999


Q ss_pred             HHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924          128 TLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  206 (349)
                      .+|++.|++++|.++|+ |...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|+++
T Consensus       298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~  377 (697)
T PLN03081        298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME  377 (697)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence            99999999999999999 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF  286 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  286 (349)
                      +|.++|++|.+    ||..+||.||.+|+++|+.++|.++|++|.+.     |+.||..||+.++.+|++.|++++|.++
T Consensus       378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~  448 (697)
T PLN03081        378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-----GVAPNHVTFLAVLSACRYSGLSEQGWEI  448 (697)
T ss_pred             HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence            99999999976    79999999999999999999999999999998     9999999999999999999999999999


Q ss_pred             HHHHhhC-CC-CCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCC
Q 018924          287 IELLNDK-GF-IPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGD  339 (349)
Q Consensus       287 ~~~~~~~-~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~  339 (349)
                      |+.|.+. +. |+..+|+.++ +|++.|  ++|.+++++|   ++.|+..+|..+++.
T Consensus       449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a  503 (697)
T PLN03081        449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA  503 (697)
T ss_pred             HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence            9999864 55 8889999999 999999  9999998876   578999887766543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.3e-51  Score=375.14  Aligned_cols=319  Identities=15%  Similarity=0.161  Sum_probs=251.1

Q ss_pred             ChhhhhhC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCC
Q 018924            1 MQKMRDLG-LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPN   79 (349)
Q Consensus         1 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~   79 (349)
                      |+.|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. +  
T Consensus       110 f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~--  186 (697)
T PLN03081        110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E--  186 (697)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-C--
Confidence            45677654 7899999999999999999999999999999999999999999999999999999999999999997 4  


Q ss_pred             CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHH
Q 018924           80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYR  158 (349)
Q Consensus        80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~  158 (349)
                        ||..+|++++.+|++.|++++|.++|++|.+.|+.|+. .+|+.++.+++..|..+.+.+++. +...+..||..+|+
T Consensus       187 --~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n  263 (697)
T PLN03081        187 --RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP-RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC  263 (697)
T ss_pred             --CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh-hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence              78899999999999999999999999999988888877 777777777777777777777766 66666677777777


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  238 (349)
                      .++.+|++.|++++|.++|++|.    .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g  339 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA  339 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            77777777777777777777663    34666777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~  315 (349)
                      ++++|.+++..|.+.     |+.||..+++.|+.+|++.|++++|.++|++|.+   ++..+|+.++ +|++.|  ++|+
T Consensus       340 ~~~~a~~i~~~m~~~-----g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~  411 (697)
T PLN03081        340 LLEHAKQAHAGLIRT-----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAV  411 (697)
T ss_pred             chHHHHHHHHHHHHh-----CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHH
Confidence            777777777777766     7777777777777777777777777777776654   4666677777 777777  6777


Q ss_pred             HHHHHHHhCCCCCCcccccCCC
Q 018924          316 ETLRELYGNSLAGNEETLSGPE  337 (349)
Q Consensus       316 ~~~~~m~~~~~~p~~~t~~~~l  337 (349)
                      ++|++|.+.|+.||..||..++
T Consensus       412 ~lf~~M~~~g~~Pd~~T~~~ll  433 (697)
T PLN03081        412 EMFERMIAEGVAPNHVTFLAVL  433 (697)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHH
Confidence            7777777777777777765443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.2e-51  Score=383.56  Aligned_cols=318  Identities=20%  Similarity=0.240  Sum_probs=277.5

Q ss_pred             ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924            1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV   80 (349)
Q Consensus         1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~   80 (349)
                      |++|.+    ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+. +.|+
T Consensus       245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~-~~g~  319 (857)
T PLN03077        245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV-KTGF  319 (857)
T ss_pred             HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-HhCC
Confidence            456654    78889999999999999999999999999999999999999999999999999999999999999 8899


Q ss_pred             CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924           81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN  159 (349)
Q Consensus        81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~  159 (349)
                      .||..+|++|+.+|++.|++++|.++|++|.    .|+. .+|++++.+|++.|++++|+++|+ |...++.||..||+.
T Consensus       320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~-~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~  394 (857)
T PLN03077        320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA-VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS  394 (857)
T ss_pred             ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe-eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence            9999999999999999999999999999985    4677 899999999999999999999999 888999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ  239 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  239 (349)
                      ++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+    +|..+|+.+|.+|++.|+
T Consensus       395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~  470 (857)
T PLN03077        395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNR  470 (857)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999999876    678899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-------------------------
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-------------------------  294 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------------------  294 (349)
                      .++|.++|++|..      ++.||..||+.++.+|++.|+++.+.+++..+.+.+                         
T Consensus       471 ~~eA~~lf~~m~~------~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~  544 (857)
T PLN03077        471 CFEALIFFRQMLL------TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW  544 (857)
T ss_pred             HHHHHHHHHHHHh------CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence            9999999999874      677888877776665555444444444444333322                         


Q ss_pred             ------CCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924          295 ------FIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG  338 (349)
Q Consensus       295 ------~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~  338 (349)
                            .++..+|+.++ +|++.|  ++|+++|++|.+.|+.||..||..++.
T Consensus       545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~  597 (857)
T PLN03077        545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC  597 (857)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence                  46778899999 999999  899999999999999999999877664

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.5e-49  Score=371.35  Aligned_cols=317  Identities=17%  Similarity=0.119  Sum_probs=239.3

Q ss_pred             ChhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924            1 MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV   80 (349)
Q Consensus         1 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~   80 (349)
                      |++|.+.|+.||..+|+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .   
T Consensus       276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~---  351 (857)
T PLN03077        276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-T---  351 (857)
T ss_pred             HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999997 4   


Q ss_pred             CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924           81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN  159 (349)
Q Consensus        81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~  159 (349)
                       ||..+|+++|.+|++.|++++|.++|++|.+.|+.|+. .+|+.++.+|++.|+++.|.++++ +...|..|+..+|+.
T Consensus       352 -~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~  429 (857)
T PLN03077        352 -KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA  429 (857)
T ss_pred             -CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence             67789999999999999999999999999999999999 999999999999999999999999 888899999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ  239 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  239 (349)
                      ++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+
T Consensus       430 Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~  504 (857)
T PLN03077        430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA  504 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence            9999999999999999999885    35677888888888888888888888888865 466666555444444433333


Q ss_pred             HHHHHHHHHHHHHHhcccccC------------------------------CCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924          240 IHKAVEAMKKVLAAYQTLVKW------------------------------KPSVESLAACLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~------------------------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  289 (349)
                      ++.+.+++..+.+.     |+                              .||..+|+.+|.+|++.|+.++|.++|++
T Consensus       505 l~~~~~i~~~~~~~-----g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~  579 (857)
T PLN03077        505 LMCGKEIHAHVLRT-----GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR  579 (857)
T ss_pred             HHHhHHHHHHHHHh-----CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33333333333222     11                              23444444444444444444444444444


Q ss_pred             HhhCCC-CCchhHHHHh-hhhhcC--cchHHHHHHHH-hCCCCCCcccc
Q 018924          290 LNDKGF-IPTDLQDKLL-DNVQNG--KSNLETLRELY-GNSLAGNEETL  333 (349)
Q Consensus       290 ~~~~~~-~~~~~~~~l~-~~~~~g--~~a~~~~~~m~-~~~~~p~~~t~  333 (349)
                      |.+.|. |+..+|+.++ +|.+.|  ++|.++|++|. +.|+.|+..+|
T Consensus       580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y  628 (857)
T PLN03077        580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY  628 (857)
T ss_pred             HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence            444433 4444444444 444444  44444444444 34444444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=7.3e-24  Score=182.55  Aligned_cols=300  Identities=17%  Similarity=0.150  Sum_probs=243.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HHHHHHHHHHHhh
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WVIYATVGNGYGK   96 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~   96 (349)
                      ...+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+. ..+..++   ...+..++..|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999998743 356689999999999999999999999998 4332222   3567889999999


Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCC----hhhHHHHHHHHhccCCHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVL----NNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~----~~~~~~li~~~~~~~~~~  171 (349)
                      .|++++|..+|+++.+.  .|....+++.++..+...|++++|.+.++ +...+..++    ...+..+...+.+.|+++
T Consensus       120 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        120 AGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             CCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999875  33333789999999999999999999999 443332221    124566778888999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +|...++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.++.....+++.++.+|...|++++|.+.++++.
T Consensus       198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998764 344567788889999999999999999999986544335678899999999999999999999998


Q ss_pred             HHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh---cC--cchHHHHHHHHhCC
Q 018924          252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ---NG--KSNLETLRELYGNS  325 (349)
Q Consensus       252 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~---~g--~~a~~~~~~m~~~~  325 (349)
                      +.       .|+...+..+...+.+.|++++|..+++++.+.. |+...++.++ .+..   .|  ++++.++++|.+.+
T Consensus       277 ~~-------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        277 EE-------YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH-PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             Hh-------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            54       6777777889999999999999999999988774 5556777777 5443   34  78999999999988


Q ss_pred             CCCCccc
Q 018924          326 LAGNEET  332 (349)
Q Consensus       326 ~~p~~~t  332 (349)
                      +.|++.-
T Consensus       349 ~~~~p~~  355 (389)
T PRK11788        349 LKRKPRY  355 (389)
T ss_pred             HhCCCCE
Confidence            8877763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=3.6e-22  Score=172.07  Aligned_cols=274  Identities=13%  Similarity=0.053  Sum_probs=227.1

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      .+..+|..+...+.+.|++++|..+++.+...+..++   ..++..+...+.+.|++++|..+|+++. +... ++..++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~~-~~~~~~  144 (389)
T PRK11788         67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV-DEGD-FAEGAL  144 (389)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCc-chHHHH
Confidence            3667899999999999999999999999987643222   2467888999999999999999999998 5433 567889


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      +.++..+.+.|++++|.+.++.+.+.++.+..   ...+..+...+...|++++|...|+......+.+...+..+...+
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  224 (389)
T PRK11788        145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence            99999999999999999999999886544322   124567788889999999999999943333444566788889999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  244 (349)
                      .+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+..  |+...+..++..+.+.|++++|.
T Consensus       225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999876433334568889999999999999999999998864  66667788999999999999999


Q ss_pred             HHHHHHHHHhcccccCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhCCC
Q 018924          245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD---EGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~  295 (349)
                      .+++++.+.       .|+..++..++..+..   .|+.+++..+++.+.+.++
T Consensus       303 ~~l~~~l~~-------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~  349 (389)
T PRK11788        303 ALLREQLRR-------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL  349 (389)
T ss_pred             HHHHHHHHh-------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence            999999854       7999999988887764   5689999999999987643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.92  E-value=1.4e-21  Score=186.13  Aligned_cols=300  Identities=14%  Similarity=0.053  Sum_probs=229.8

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...+..+...+.+.|++++|..+++.+.... +.+..+|..+..++...|++++|...++++. +... .+...+..+
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l  641 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL-ALQP-DSALALLLL  641 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CChHHHHHH
Confidence            456677788888888888888888888887653 4467788888888888888888888888887 4332 456677788


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      ..++.+.|++++|...|+++.+.  .|+...++..++..+...|++++|..+++......+.+...+..+...+...|++
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  719 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY  719 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence            88888888888888888888764  3444468888888888888888888888844444456667777888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ++|...++.+.+.+  |+..++..+..++.+.|++++|...++.+.+..+. +...+..+...|...|++++|.+.|+++
T Consensus       720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  796 (899)
T TIGR02917       720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTV  796 (899)
T ss_pred             HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            88888888887753  44466777888888888888888888888776543 6677778888888888888888888888


Q ss_pred             HHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          251 LAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       251 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      .+.      .+++...+..+...+...|+ ++|...++++....+.+...+..+. .+...|  ++|.+.|+++.+.+
T Consensus       797 ~~~------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       797 VKK------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHh------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            764      23466777777778888888 7788888887777666666777777 777777  78888888887754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.92  E-value=1.6e-21  Score=185.79  Aligned_cols=297  Identities=11%  Similarity=0.009  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...+..+...+...|++++|.+.|+++.+.+. .+..++..+...+.+.|+.++|..+++++. ..+. .+...+..++.
T Consensus       499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~  575 (899)
T TIGR02917       499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAA-ELNP-QEIEPALALAQ  575 (899)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-cchhHHHHHHH
Confidence            44455555555555555555555555554421 234455555555555555555555555544 2221 33334444555


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      .+.+.|++++|..+++++.+..  |+...+|..+..++...|++++|...|+......+.+...+..+...+...|++++
T Consensus       576 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  653 (899)
T TIGR02917       576 YYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK  653 (899)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence            5555555555555555544321  22213455555555555555555555542222222333344444444445555555


Q ss_pred             HHHHHHHHHh----------------------------------cCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          173 AEKIFEEWES----------------------------------QALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       173 a~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      |..+++.+.+                                  .. +.+...+..+...+...|++++|...|+.+...
T Consensus       654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  732 (899)
T TIGR02917       654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR  732 (899)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            5555544444                                  32 223334444444444555555555555554443


Q ss_pred             CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924          219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      +  |+..++..++.++.+.|++++|.+.++++.+.      .+.+...+..+...|...|++++|...|+.+.+..+.+.
T Consensus       733 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  804 (899)
T TIGR02917       733 A--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA  804 (899)
T ss_pred             C--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence            3  22234444444555555555555555555432      122344445555555555555555555555555555455


Q ss_pred             hhHHHHh-hhhhcC-cchHHHHHHHHh
Q 018924          299 DLQDKLL-DNVQNG-KSNLETLRELYG  323 (349)
Q Consensus       299 ~~~~~l~-~~~~~g-~~a~~~~~~m~~  323 (349)
                      ..+..+. .+.+.| .+|+..+++...
T Consensus       805 ~~~~~l~~~~~~~~~~~A~~~~~~~~~  831 (899)
T TIGR02917       805 VVLNNLAWLYLELKDPRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence            5555555 555554 445555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=1.2e-18  Score=157.86  Aligned_cols=298  Identities=9%  Similarity=-0.002  Sum_probs=222.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...+..++.+....|++++|...|+++..... .+...+..+...+...|++++|...+++.. .... .+...+..+.
T Consensus        75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al-~l~P-~~~~a~~~la  151 (656)
T PRK15174         75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAW-LAFS-GNSQIFALHL  151 (656)
T ss_pred             chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHH
Confidence            345556666777788999999999998887642 255677888888888999999999998887 4322 4466677888


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc-cCChhhHHHHHHHHhccCCH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV-KVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~  170 (349)
                      ..+...|++++|...++.+....+.+.  ..+..+ ..+...|++++|...++...... .++...+..+..++...|++
T Consensus       152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~--~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~  228 (656)
T PRK15174        152 RTLVLMDKELQAISLARTQAQEVPPRG--DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY  228 (656)
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCCH--HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence            888999999999998888776543332  344443 34778899999998888322222 23334445566778888999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH----HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK----AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      ++|...++.+.+.. +.+...+..+...|...|++++    |...|++.....+. +...+..+...+...|++++|...
T Consensus       229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~  306 (656)
T PRK15174        229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPL  306 (656)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999888764 4456677788888899998885    78888888876543 566788888889999999999999


Q ss_pred             HHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          247 MKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      +++++..       .| +...+..+..++...|++++|...++.+....+.+...+..+. ++...|  ++|...|++..
T Consensus       307 l~~al~l-------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        307 LQQSLAT-------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9998854       45 4556677778888999999999999888877665444444455 777778  88999998887


Q ss_pred             hC
Q 018924          323 GN  324 (349)
Q Consensus       323 ~~  324 (349)
                      +.
T Consensus       380 ~~  381 (656)
T PRK15174        380 QA  381 (656)
T ss_pred             Hh
Confidence            64

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=3.3e-18  Score=154.98  Aligned_cols=299  Identities=11%  Similarity=0.016  Sum_probs=242.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      ...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++. .... .+...+..+...+.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l-~~~P-~~~~a~~~la~~l~  121 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLL-AVNV-CQPEDVLLVASVLL  121 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHH
Confidence            345677888999999999999999887544 34456666677788999999999999998 4343 45667888999999


Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHH
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK  175 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  175 (349)
                      ..|++++|...+++..+.  .|+...++..+...+...|++++|...++......+.+...+..+ ..+...|++++|..
T Consensus       122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHH
Confidence            999999999999999874  566557899999999999999999999983333333333344333 34788999999999


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH----HHHHHHHHH
Q 018924          176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK----AVEAMKKVL  251 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~  251 (349)
                      .++.+.+....++...+..+..++...|++++|...+++.....+. +...+..+...+...|++++    |...|++++
T Consensus       199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            9999887643344445556678889999999999999999987643 57778889999999999986    899999998


Q ss_pred             HHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCC
Q 018924          252 AAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLA  327 (349)
Q Consensus       252 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~  327 (349)
                      ..       .| +...+..+...+...|++++|...+++.....+.+...+..+. .+.+.|  ++|+..|+++...  .
T Consensus       278 ~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~  348 (656)
T PRK15174        278 QF-------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K  348 (656)
T ss_pred             hh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence            54       56 5678888899999999999999999999998887777888888 999999  8999999999875  4


Q ss_pred             CCc
Q 018924          328 GNE  330 (349)
Q Consensus       328 p~~  330 (349)
                      |+.
T Consensus       349 P~~  351 (656)
T PRK15174        349 GVT  351 (656)
T ss_pred             ccc
Confidence            554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=2.2e-17  Score=149.85  Aligned_cols=310  Identities=15%  Similarity=0.015  Sum_probs=187.0

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---------------
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTM---------------   73 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---------------   73 (349)
                      +.|+...|..+..+|.+.|++++|++.++..++.+.. +...|..+..++...|++++|+..+..               
T Consensus       156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~  234 (615)
T TIGR00990       156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA  234 (615)
T ss_pred             cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            4567777777888888888888888888887775322 445666677777777777766543322               


Q ss_pred             --------------------------------------------------------------------------------
Q 018924           74 --------------------------------------------------------------------------------   73 (349)
Q Consensus        74 --------------------------------------------------------------------------------   73 (349)
                                                                                                      
T Consensus       235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~  314 (615)
T TIGR00990       235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA  314 (615)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence                                                                                            


Q ss_pred             -----hhcCCC-CCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 018924           74 -----MEADPN-VAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY  146 (349)
Q Consensus        74 -----~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  146 (349)
                           .. +.+ ..| ....|+.+...+...|++++|+..|++..+.  .|+...+|..+...+...|++++|...|+..
T Consensus       315 ~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  391 (615)
T TIGR00990       315 RAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKA  391 (615)
T ss_pred             HHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                 11 100 011 2223444555555666677777777666653  3443346666666677777777777777633


Q ss_pred             HhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924          147 KKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS  226 (349)
Q Consensus       147 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  226 (349)
                      ....+.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+..+. +...
T Consensus       392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~  469 (615)
T TIGR00990       392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDV  469 (615)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHH
Confidence            33334445666667777777777777777777766643 334455556666677777777777777776664322 4556


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      |+.+...+...|++++|++.|++.+...+......++.. .++.....+...|++++|..++++.....+.+...+..+.
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la  549 (615)
T TIGR00990       470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA  549 (615)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            667777777777777777777777643110000011111 1111122233357777777777777666665555666677


Q ss_pred             -hhhhcC--cchHHHHHHHHhC
Q 018924          306 -DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       306 -~~~~~g--~~a~~~~~~m~~~  324 (349)
                       .+.+.|  ++|+..|++..+.
T Consensus       550 ~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       550 QLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHccCHHHHHHHHHHHHHH
Confidence             777777  7777777776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=8.4e-19  Score=147.39  Aligned_cols=317  Identities=14%  Similarity=0.104  Sum_probs=246.3

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-HH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA-TV   90 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l   90 (349)
                      -..+|..+...+-..|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+.|.+..   .+.|+..... .+
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcch
Confidence            4678999999999999999999999999987433 56789999999999999999999998877   4446655543 45


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhhHHHHHHHHhccCC
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGYRNVISSLLKLDD  169 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~  169 (349)
                      ...+...|++++|...|.+..+.  .|....+|+.|...+...|+...|++.|+... .+.|+ ...|-.+...|...+.
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP~f~dAYiNLGnV~ke~~~  267 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDPNFLDAYINLGNVYKEARI  267 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCCcchHHHhhHHHHHHHHhc
Confidence            55666688899999988888774  55665789999999999999999998888332 23333 4578888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      ++.|...+....... +.....+..+...|...|.++.|...|++..+..+. -+..|+.|..++-..|+..+|.+.|++
T Consensus       268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence            898888888877642 233556777777888888888888888888875432 256788888888888888888888888


Q ss_pred             HHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          250 VLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       250 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      .+.       +.|+ ....+.|...+...|++++|..+|....+..+.-...++.+. .|-++|  ++|+..+++..+  
T Consensus       346 aL~-------l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--  416 (966)
T KOG4626|consen  346 ALR-------LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--  416 (966)
T ss_pred             HHH-------hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence            884       3554 567788888888888888888888888877665566778888 888888  888888888765  


Q ss_pred             CCCCcccccCCCCChhHHHHH
Q 018924          326 LAGNEETLSGPEGDTSDLIEE  346 (349)
Q Consensus       326 ~~p~~~t~~~~l~~~~~~~~~  346 (349)
                      ++|+..--...+|+.+..+.+
T Consensus       417 I~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  417 IKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             cCchHHHHHHhcchHHHHhhh
Confidence            678777666667766655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=2.5e-16  Score=143.06  Aligned_cols=297  Identities=13%  Similarity=-0.035  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGY   94 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~   94 (349)
                      .+......+.+.|++++|+..|++.+..  .|+...|..+..+|.+.|++++|+..++... +.+. .+..+|..+..+|
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al-~l~p-~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAAL-ELDP-DYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHH
Confidence            4567788899999999999999999875  5788899999999999999999999999988 5443 4567888899999


Q ss_pred             hhcCcHHHHHHHHHHHHHhhc----------------------------CCcchhhHHHHHHHH----------------
Q 018924           95 GKVGLLDKALAMLKKSEEQIK----------------------------GAKVNSAYNVILTLY----------------  130 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~----------------  130 (349)
                      ...|++++|+..|........                            .|.....+..+...+                
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            999999999876654322100                            011000111111100                


Q ss_pred             --------------------hhcCCHHHHHHHHH-HHHhh-ccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 018924          131 --------------------GKYGKKDDVLRIWE-LYKKA-VKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY  187 (349)
Q Consensus       131 --------------------~~~~~~~~a~~~~~-~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  187 (349)
                                          ...+++++|.+.|+ ....+ ..| ....+..+...+...|++++|...+++..+.. +.
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence                                11257888999998 33322 223 34568888888999999999999999998853 33


Q ss_pred             CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVES  266 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~  266 (349)
                      +...|..+...+...|++++|...|+...+..+. +...|..+...+...|++++|...|++.+.       +.| +...
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-------l~P~~~~~  435 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID-------LDPDFIFS  435 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCccCHHH
Confidence            3557888889999999999999999999886543 577889999999999999999999999985       356 4677


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                      +..+...+.+.|++++|...++......+.+...|+.+. .+...|  ++|+..|++..+.
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            778888899999999999999999988887888899999 999998  8999999998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=3.2e-17  Score=138.00  Aligned_cols=303  Identities=15%  Similarity=0.141  Sum_probs=214.8

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------------------------------HHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-----------------------------------TYCTRLS   56 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------------------------------~~~~ll~   56 (349)
                      .+..|..+..++...|+.+.|.+.|.+.++.+  |+..                                   .|..|..
T Consensus       149 fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~  226 (966)
T KOG4626|consen  149 FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC  226 (966)
T ss_pred             hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence            46677777777888888888777777776642  3222                                   2333333


Q ss_pred             HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                      .+-..|+...|+..|++.. +.+. .-...|-.|...|...+.+++|...|.+...  ..|+...++..+...|...|..
T Consensus       227 ~f~~~Gei~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~l  302 (966)
T KOG4626|consen  227 VFNAQGEIWLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLL  302 (966)
T ss_pred             HHhhcchHHHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccH
Confidence            3444555666666666555 2222 1234556667777777777777777766655  3455545666777777777777


Q ss_pred             HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924          137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                      +.|+..|+......+.-...|+.+..++-..|++.+|...+.+.+... +......+.|...|...|.+++|..+|....
T Consensus       303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al  381 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKAL  381 (966)
T ss_pred             HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            777777773333333334678888888888888888888888887753 3345667778888888888888888888877


Q ss_pred             HcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924          217 LKGREIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       217 ~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  294 (349)
                      +-.  |. ...++.|...|-++|++++|+..|++++       .+.|+ ...|+.+-..|-..|+.+.|.+.+.+....+
T Consensus       382 ~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-------rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  382 EVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-------RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             hhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-------hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            743  33 3467888888888899999999998888       77886 4678888888888999999999988888877


Q ss_pred             CCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924          295 FIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET  332 (349)
Q Consensus       295 ~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t  332 (349)
                      |.-...++.+. .|-..|  .+|+.-+++..+  ++||..-
T Consensus       453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd  491 (966)
T KOG4626|consen  453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD  491 (966)
T ss_pred             cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence            76677888888 888888  888988888876  5677643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.79  E-value=2.6e-15  Score=145.12  Aligned_cols=301  Identities=11%  Similarity=0.003  Sum_probs=162.0

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH------------HHHHHHHHhcCChHHHHHHHHHhhcCC
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD-RYTY------------CTRLSAYADASDHEGIDKILTMMEADP   78 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~   78 (349)
                      +...+..+...+.+.|++++|+..|++..+...... ...|            ......+.+.|++++|...|++.. ..
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al-~~  380 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR-QV  380 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh
Confidence            455556666666666666666666666555422111 1111            111233445566666666666655 32


Q ss_pred             CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH-------------------------------
Q 018924           79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL-------------------------------  127 (349)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-------------------------------  127 (349)
                      .. .+...+..+...+...|++++|++.|++..+..  |+...++..+.                               
T Consensus       381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~  457 (1157)
T PRK11447        381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER  457 (1157)
T ss_pred             CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            22 334445556666666666666666666665532  22212222222                               


Q ss_pred             -----------HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 018924          128 -----------TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI  196 (349)
Q Consensus       128 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  196 (349)
                                 ..+...|++++|++.|+......+.+...+..+...|.+.|++++|...++++.+.. +.+...+..+.
T Consensus       458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~a  536 (1157)
T PRK11447        458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYG  536 (1157)
T ss_pred             HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence                       222334555555555553222223333444555555555566666666655555432 11222222222


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHc---------------------------------------CcccchhhHHHHHHHHhcC
Q 018924          197 DVYCRNGLLEKAENLVNHEKLK---------------------------------------GREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       197 ~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~~~~  237 (349)
                      ..+...++.++|...++.+...                                       ..+.+...+..+...+.+.
T Consensus       537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~  616 (1157)
T PRK11447        537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR  616 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence            2222333333333333221100                                       0112333445566667777


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS  313 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~  313 (349)
                      |++++|++.|+++++.       .| +...+..+...+...|+.++|.+.++.+....+.+...+..+. ++.+.|  ++
T Consensus       617 g~~~~A~~~y~~al~~-------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~e  689 (1157)
T PRK11447        617 GDYAAARAAYQRVLTR-------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAA  689 (1157)
T ss_pred             CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHH
Confidence            8888888888888753       44 5677778888888888888888888877776665666666667 777777  78


Q ss_pred             hHHHHHHHHhC
Q 018924          314 NLETLRELYGN  324 (349)
Q Consensus       314 a~~~~~~m~~~  324 (349)
                      |.++++++...
T Consensus       690 A~~~~~~al~~  700 (1157)
T PRK11447        690 AQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHhhh
Confidence            88888887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=1e-14  Score=141.16  Aligned_cols=297  Identities=11%  Similarity=-0.005  Sum_probs=210.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-----------
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA-----------   88 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----------   88 (349)
                      ...+.+.|++++|...|++..+... .+...+..+..++...|++++|++.|++.. +... .+...+.           
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL-~~~p-~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQAL-RMDP-GNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhcCH
Confidence            3456778888888888888887642 245567777888888888888888888876 3222 1222222           


Q ss_pred             -------------------------------HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924           89 -------------------------------TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD  137 (349)
Q Consensus        89 -------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  137 (349)
                                                     .+...+...|++++|++.|++..+.  .|+...++..+...|...|+++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence                                           2334455689999999999999874  4555468888999999999999


Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc----------------------------------
Q 018924          138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ----------------------------------  183 (349)
Q Consensus       138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------------------  183 (349)
                      +|...++......+.+...+..+...+...++.++|...++.+...                                  
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999433333333333333333333444444444443322100                                  


Q ss_pred             -----CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924          184 -----ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV  258 (349)
Q Consensus       184 -----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  258 (349)
                           ..+.+...+..+...+.+.|++++|...|++..+..+. +...+..++..|...|++++|++.++...+      
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~------  665 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPA------  665 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------
Confidence                 12445566778889999999999999999999987644 678889999999999999999999998874      


Q ss_pred             cCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc------hhHHHHh-hhhhcC--cchHHHHHHHH-hCCCC
Q 018924          259 KWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT------DLQDKLL-DNVQNG--KSNLETLRELY-GNSLA  327 (349)
Q Consensus       259 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~-~~~~~g--~~a~~~~~~m~-~~~~~  327 (349)
                       ..| +......+..++...|++++|.++++.+....+.+.      ..+..+. .+...|  ++|+..|++.. ..|+.
T Consensus       666 -~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        666 -TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             -cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence             355 455667777888899999999999999987644222      3455556 777778  89999998874 34555


Q ss_pred             CC
Q 018924          328 GN  329 (349)
Q Consensus       328 p~  329 (349)
                      |+
T Consensus       745 ~~  746 (1157)
T PRK11447        745 PT  746 (1157)
T ss_pred             CC
Confidence            43

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.76  E-value=1.7e-14  Score=133.61  Aligned_cols=313  Identities=10%  Similarity=0.012  Sum_probs=225.2

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...+..+...+...|++++|..+|++..+.. +.+...+..+..++...|++++|...+++.. +... .+.. +..+
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l-~~~P-~~~~-~~~l  122 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV-SGAP-DKAN-LLAL  122 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHH-HHHH
Confidence            355568899999999999999999999988763 3356677788888999999999999999987 4332 4445 8888


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH--------------------------
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE--------------------------  144 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------  144 (349)
                      ..++...|+.++|+..++++.+.  .|+...++..+..++...+..+.|+..++                          
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~  200 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM  200 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            89999999999999999999885  44443566667777766666655443333                          


Q ss_pred             --------------------HHHhh--ccCChh-hHH----HHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 018924          145 --------------------LYKKA--VKVLNN-GYR----NVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLI  196 (349)
Q Consensus       145 --------------------~~~~~--~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  196 (349)
                                          .....  ..|+.. .+.    ..+.++...|++++|...|+.+.+.+.+ |+. ....+.
T Consensus       201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la  279 (765)
T PRK10049        201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVA  279 (765)
T ss_pred             cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHH
Confidence                                11111  112211 111    1133456778999999999999886522 221 222357


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHcCccc---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccc------ccCCCCH---
Q 018924          197 DVYCRNGLLEKAENLVNHEKLKGREI---HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL------VKWKPSV---  264 (349)
Q Consensus       197 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~p~~---  264 (349)
                      .+|...|++++|...|+++.+.....   .......+..++...|++++|.++++.+....+..      ..-.|+.   
T Consensus       280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~  359 (765)
T PRK10049        280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL  359 (765)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence            78999999999999999987654221   12345667778899999999999999998641100      0112332   


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924          265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET  332 (349)
Q Consensus       265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t  332 (349)
                      ..+..+...+...|+.++|+++++++....|.+...+..+. .+...|  ++|++.+++...  +.|+...
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~  428 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNIN  428 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence            34456677788999999999999999988888888888888 888888  899999998877  4587644

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.75  E-value=1.5e-17  Score=136.35  Aligned_cols=260  Identities=17%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK   96 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~   96 (349)
                      .+...+.+.|++++|++++........+| |...|..+...+...++++.|...++++. ..+. -+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-~~~~-~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-ASDK-ANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-cccccccccccc-cc
Confidence            45677888899999999886654443223 44455556666667888888888888887 5443 245556667666 68


Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCChhhHHHHHHHHhccCCHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLNNGYRNVISSLLKLDDLESAE  174 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~  174 (349)
                      .+++++|.+++++..+..  ++. ..+..++..+...++++++..+++.  .....+++...|..+...+.+.|+.++|.
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDP-RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccccccccccccccc--ccc-chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            888888888887765532  333 5677788888888888888888883  22233456677788888888888888999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                      +.+++..+.. +.|....+.++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|+.+|++.... 
T Consensus       167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-  243 (280)
T PF13429_consen  167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-  243 (280)
T ss_dssp             HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-
Confidence            8888888864 3356677788888888888888888888777654 346667788888888888889999988888753 


Q ss_pred             cccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          255 QTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                            .| |......+..++...|+.++|.++.+++..
T Consensus       244 ------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  244 ------NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             ------STT-HHHHHHHHHHHT-----------------
T ss_pred             ------ccccccccccccccccccccccccccccccccc
Confidence                  45 677778888888888888888888776543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.9e-14  Score=116.48  Aligned_cols=240  Identities=15%  Similarity=0.131  Sum_probs=193.3

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924            8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      -.+.+..+|.++|.++++-...+.|.+++++......+.+..+||.+|.+-+-..+    .+++.+|. .....||..|+
T Consensus       202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi-sqkm~Pnl~Tf  276 (625)
T KOG4422|consen  202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI-SQKMTPNLFTF  276 (625)
T ss_pred             hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH-HhhcCCchHhH
Confidence            34568899999999999999999999999999988888999999999987654333    67888898 77888999999


Q ss_pred             HHHHHHHhhcCcHHH----HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHHHHHh-----hcc----CC
Q 018924           88 ATVGNGYGKVGLLDK----ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWELYKK-----AVK----VL  153 (349)
Q Consensus        88 ~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~-----~~~----~~  153 (349)
                      |+++.+..+.|+++.    |.+++.+|++-|+.|.. .+|..+|..+++.++..+.. .++.-...     .++    .|
T Consensus       277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsL-sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d  355 (625)
T KOG4422|consen  277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSL-SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD  355 (625)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcch-hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence            999999999998875    45688899999999999 99999999999988886543 33331111     122    23


Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924          154 NNGYRNVISSLLKLDDLESAEKIFEEWESQA----LCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS  226 (349)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  226 (349)
                      ...|...+..|.+..+.+.|.++..-+....    +.|+.   .-|..+....|+....+.-..+|+.|.-.-.-|+..+
T Consensus       356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~  435 (625)
T KOG4422|consen  356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT  435 (625)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence            4567788899999999999998887665321    23332   2356788888999999999999999987777788888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...++.+....|+++-.-++|..++..
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~  462 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEY  462 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence            889999998999998888888888776

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=3.4e-14  Score=110.93  Aligned_cols=287  Identities=15%  Similarity=0.177  Sum_probs=216.4

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH--HHHHHHHHHhhcCcHHHH
Q 018924           26 TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKA  103 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a  103 (349)
                      +.+.++|.++|-+|.+.... +..+--+|.+.|-+.|..|.|+.+.+.+..+++...+..  ..-.|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            57899999999999985322 445677888899999999999999999885656543332  234678889999999999


Q ss_pred             HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh----hhHHHHHHHHhccCCHHHHHHHHH
Q 018924          104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN----NGYRNVISSLLKLDDLESAEKIFE  178 (349)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~  178 (349)
                      +.+|..+.+.+....  .+...|+..|-...+|++|+++-+ ....+..+..    ..|.-+...+....+.+.|..++.
T Consensus       127 E~~f~~L~de~efa~--~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         127 EDIFNQLVDEGEFAE--GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHhcchhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999988654333  478899999999999999999988 4444333322    346677777778899999999999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924          179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV  258 (349)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  258 (349)
                      +..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.++.--+.+...|..+|...|+.++...++..+.+.     
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-----  278 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-----  278 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----
Confidence            998864 33445555677889999999999999999999876656677889999999999999999999999865     


Q ss_pred             cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-----cchHHHHHHHHhC
Q 018924          259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-----KSNLETLRELYGN  324 (349)
Q Consensus       259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-----~~a~~~~~~m~~~  324 (349)
                        .++...-..+-+.-....-.+.|...+.+-... .|+...+..++ .-....     ++.+.+++.|...
T Consensus       279 --~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         279 --NTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             --cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence              444444445545444555566666666554443 36777788888 333322     4667777887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.74  E-value=7.8e-14  Score=129.32  Aligned_cols=307  Identities=11%  Similarity=0.011  Sum_probs=221.4

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++. +... .+...+..+
T Consensus        81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al-~~~P-~~~~~~~~l  156 (765)
T PRK10049         81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQAL-PRAP-QTQQYPTEY  156 (765)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence            356777888889999999999999999998863 33555 8888888899999999999999988 4333 344444556


Q ss_pred             HHHHhhcCcHHHHHHHH----------------------------------------------HHHHHh-hcCCcchhhH
Q 018924           91 GNGYGKVGLLDKALAML----------------------------------------------KKSEEQ-IKGAKVNSAY  123 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~~~~  123 (349)
                      ..++...|..+.|++.+                                              +.+.+. ...|+....+
T Consensus       157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~  236 (765)
T PRK10049        157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY  236 (765)
T ss_pred             HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence            66666666655444433                                              333322 1112210111


Q ss_pred             ----HHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---CcchHHH
Q 018924          124 ----NVILTLYGKYGKKDDVLRIWE-LYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY---DTRIPNF  194 (349)
Q Consensus       124 ----~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~  194 (349)
                          ...+..+...|++++|+..|+ +...+.+ |+. ....+..+|...|++++|...|+.+.+.....   .......
T Consensus       237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~  315 (765)
T PRK10049        237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD  315 (765)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence                111334567799999999999 4443321 222 22335778999999999999999987643111   1234556


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCc-----------ccc---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccC
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGR-----------EIH---VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW  260 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  260 (349)
                      +..++...|++++|..+++.+....+           .|+   ...+..+...+...|++++|+++++++...       
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-------  388 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-------  388 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            77788999999999999999987532           122   224556777889999999999999999864       


Q ss_pred             CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924          261 KP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEE  331 (349)
Q Consensus       261 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~  331 (349)
                      .| +...+..+...+...|++++|++.++.+....|.+...+.... .+.+.|  ++|..+++++.+.  .|+..
T Consensus       389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~  461 (765)
T PRK10049        389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP  461 (765)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence            45 5778888888999999999999999999998887777777777 777777  8999999999874  55554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=1.8e-16  Score=129.88  Aligned_cols=258  Identities=17%  Similarity=0.092  Sum_probs=114.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .+...+.+.|++++|+++++........+.+...|..+.......++++.|.+.++++...+.. +. ..+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~-~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP-QDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-ccccccccc-cc
Confidence            5577888999999999999665413212244555566777888899999999999999886543 33 577778877 79


Q ss_pred             cCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924          133 YGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAEN  210 (349)
Q Consensus       133 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  210 (349)
                      .+++++|.+++. ....  .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999988 3222  2556667888889999999999999999977532 34567788889999999999999999


Q ss_pred             HHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924          211 LVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL  290 (349)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  290 (349)
                      .+++..+..+. |....+.++..+...|+.+++.++++.....     . ..|+..+..+..++...|+.++|...++..
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-----A-PDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----C-cCHHHHHHHHHHHhcccccccccccccccc
Confidence            99999996643 5778889999999999999999999998864     2 446667788999999999999999999999


Q ss_pred             hhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          291 NDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       291 ~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      ....+.|+.....+. ++...|  ++|.++.++..
T Consensus       241 ~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  241 LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHSTT-HHHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            998888888888888 999999  89998887654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=2.7e-13  Score=116.23  Aligned_cols=278  Identities=9%  Similarity=0.002  Sum_probs=203.3

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH--HHHHHHHhhcCcHHH
Q 018924           26 TGNFEKLDSLMHEMEENGITYDRYT-YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY--ATVGNGYGKVGLLDK  102 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~  102 (349)
                      .|+++.|.+.+....+..  +++.. |.....+..+.|+++.|...+.++. +..  |+...+  ......+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~-~~~--~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAA-ELA--DNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence            699999998888766542  22333 3333445578999999999999987 423  443322  244678899999999


Q ss_pred             HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-------hhHHHHHHHHhccCCHHHHH
Q 018924          103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-------NGYRNVISSLLKLDDLESAE  174 (349)
Q Consensus       103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~  174 (349)
                      |...++++.+.  .|+.+.+...+...|.+.|++++|.+++. ....+..++.       .+|..++.......+.+...
T Consensus       172 Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        172 ARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999885  45555788999999999999999999999 4443333222       13444455445555666777


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          175 KIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                      ++++.+.+. .+.+......+...+...|+.++|..++++..+..  ||...  .++.+....++.+++.+..+...+. 
T Consensus       250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-  323 (398)
T PRK10747        250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-  323 (398)
T ss_pred             HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence            777766443 35567778889999999999999999999888743  44432  2344555668999999999998864 


Q ss_pred             cccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          255 QTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                            .| |...+..+...|.+.|++++|.+.|+...+.. |+...+..+. .+.+.|  ++|.+++++-..
T Consensus       324 ------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        324 ------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  56 45667788888999999999999999999874 5556667777 888888  889888887644

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.68  E-value=2.3e-13  Score=127.01  Aligned_cols=264  Identities=8%  Similarity=-0.074  Sum_probs=186.5

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+..++.. +++++|+..|.+....  .|+......+...+...|++++|...|+++. ..  +|+...+..+.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-~~--~p~~~a~~~la  549 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS-LH--DMSNEDLLAAA  549 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh-cc--CCCcHHHHHHH
Confidence            56677777777766 7888888888777765  3555444444555567889999998888876 32  24444556677


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      ..+.+.|+.++|...+++..+..  |+....+..+.......|++++|...++... ...|+...+..+..++.+.|+++
T Consensus       550 ~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-~l~P~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        550 NTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL-NIAPSANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCHH
Confidence            78888899999999998887753  3332334444444555689999998888332 23356777888888888999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +|...++...+.. +.+...++.+..++...|++++|...+++..+..+. +...+..+..++...|++++|+..|++++
T Consensus       627 eA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        627 AAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999998888864 445667777888888889999999999888886543 56778888888888999999999999888


Q ss_pred             HHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          252 AAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       252 ~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      +.       .|+. .+.........+..+++.+.+-+++....
T Consensus       705 ~l-------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        705 DD-------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             hc-------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            43       5643 33333344444555666666655555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=4.8e-13  Score=114.73  Aligned_cols=261  Identities=13%  Similarity=0.103  Sum_probs=198.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      |-.......+.|+++.|...|.++.+.  .|+...+.  .....+...|+++.|...++++. +... -+......+...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-~~~P-~~~~al~ll~~~  196 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLL-EVAP-RHPEVLRLAEQA  196 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHH
Confidence            333345558899999999999999875  45544333  33667888999999999999998 5443 456777889999


Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  167 (349)
                      |.+.|++++|.+++..+.+....++..      .+|..++.......+.+...++++......+.++.....+...+...
T Consensus       197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~  276 (398)
T PRK10747        197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC  276 (398)
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence            999999999999999999875543220      12333344444455566666666633233455777888899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM  247 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  247 (349)
                      |+.++|.+++++..+.  +++...  .++.+....++.+++.+..+...+..+. |+..+..+...|.+.+++++|.+.|
T Consensus       277 g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        277 DDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             CCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998874  444422  2344445669999999999999887653 6667888899999999999999999


Q ss_pred             HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      +.+.       ...|+..++..+...+.+.|+.++|.+++++...
T Consensus       352 e~al-------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        352 RAAL-------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHH-------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9998       4489999999999999999999999999987754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.66  E-value=5.5e-13  Score=124.49  Aligned_cols=259  Identities=11%  Similarity=-0.055  Sum_probs=193.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +...|..+..++.. ++.++|...+.+.. ...  |+......+...+...|++++|...|+++...  .|.. ..+..+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al-~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~-~a~~~l  548 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAE-QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN-EDLLAA  548 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc-HHHHHH
Confidence            45677777777766 78888999777766 222  55444444555667899999999999987653  3444 567778


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  206 (349)
                      ..++...|++++|...++......+.+...+..+.......|++++|...+++..+.  .|+...+..+..++.+.|+++
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence            888899999999999998333333333334444444555669999999999999875  456778888999999999999


Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAEN  285 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~  285 (349)
                      +|...|++.....+. +...++.+...+...|++++|++.++++++.       .| +...+..+..++...|++++|..
T Consensus       627 eA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-------~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        627 AAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKG-------LPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999987644 5667888888999999999999999999854       56 56778888899999999999999


Q ss_pred             HHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          286 FIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      .+++.....+.+..+..... ...+..  +.|.+-+++--
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            99999888765555544444 444433  56666655543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.66  E-value=3.7e-12  Score=116.75  Aligned_cols=308  Identities=13%  Similarity=0.033  Sum_probs=214.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      ...+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++. .  ..|+...+..++..+...++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-~--~dp~~~~~l~layL~~~~~~  184 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELA-E--RDPTVQNYMTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhc-c--cCcchHHHHHHHHHHHhcch
Confidence            55778889999999999999887543 56677778888899999999999999987 3  23555556555555555666


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-----------------------------------
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-----------------------------------  144 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------------------------------  144 (349)
                      ..+|++.++++.+.  .|+....+..+..++.+.|-...|.++.+                                   
T Consensus       185 ~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        185 NYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            66699999999885  34443455666665555554433333322                                   


Q ss_pred             -------------HHHh---hccCChhh----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924          145 -------------LYKK---AVKVLNNG----YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL  204 (349)
Q Consensus       145 -------------~~~~---~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  204 (349)
                                   ....   ..++....    ..-.+-++...|++.++.+.|+.+...+.+.-..+-..+.++|...++
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~  342 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL  342 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence                         0011   11111111    123345667788899999999999887755445577788999999999


Q ss_pred             HHHHHHHHHHHHHcCc-----ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--------ccccCCCCHHH-HHHH
Q 018924          205 LEKAENLVNHEKLKGR-----EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ--------TLVKWKPSVES-LAAC  270 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~p~~~~-~~~l  270 (349)
                      +++|..+|+.+.....     .++......|..+|...+++++|..+++++.+..+        ......||-.. +..+
T Consensus       343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~  422 (822)
T PRK14574        343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL  422 (822)
T ss_pred             cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence            9999999998866431     22344457888899999999999999999987422        01123344333 3445


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccC
Q 018924          271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSG  335 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~  335 (349)
                      +..+...|+..+|++.++.+....|.+......+. .+...|  .+|.+.++....  +.|+......
T Consensus       423 a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~  488 (822)
T PRK14574        423 VQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER  488 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence            66678899999999999999888888888888888 888888  888888876654  3677655433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=6.2e-14  Score=119.41  Aligned_cols=287  Identities=13%  Similarity=0.028  Sum_probs=216.2

Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcCcHHHHHH
Q 018924           27 GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALA  105 (349)
Q Consensus        27 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~  105 (349)
                      =+..+|+..|.....+ +.-+......+..+|...+++++|.++|+.+.+..... -+..+|.+.+.-+-+.    -++.
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence            3567899999996654 33344577788899999999999999999987322221 4567777766544321    2222


Q ss_pred             HH-HHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          106 ML-KKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       106 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                      .+ +.+.+.  .|+.+.+|.++.++|.-.++.+.|++.|+....-.+....+|+.+..-+.....+|.|...|+..+...
T Consensus       408 ~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  408 YLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            22 333332  455558999999999999999999999994434334467888888888889999999999999886532


Q ss_pred             CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-C
Q 018924          185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-S  263 (349)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~  263 (349)
                       +.+-..|..|.-.|.+.++++.|+-.|++..+-++. +.+....+...+.+.|+.++|+++++++..       +.| |
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-------ld~kn  556 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH-------LDPKN  556 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-------cCCCC
Confidence             223334556788899999999999999999997665 666777788889999999999999999984       344 4


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCC
Q 018924          264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGN  329 (349)
Q Consensus       264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~  329 (349)
                      +..--.-...+...++.++|...++++++.-|.+...|..+. .|.+.|  +.|+.-|--+.+..-++.
T Consensus       557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            444444455677889999999999999998777777888888 999988  788888888776543333

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=1.2e-12  Score=112.82  Aligned_cols=295  Identities=9%  Similarity=-0.011  Sum_probs=205.1

Q ss_pred             HHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           15 VYNSMLKLY--YKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        15 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      .+..+.++.  ...|+++.|.+.+.+..+.  .|++. .+-....+..+.|+.+.|.+.+.+.. +....+......+..
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~-~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAA-ELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcCchHHHHHHH
Confidence            334444444  3579999999999887775  34443 44455677888899999999999986 333223333444568


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHH-HHHHHH---hc
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYR-NVISSL---LK  166 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~-~li~~~---~~  166 (349)
                      ..+...|+++.|...++.+.+..  |+.+.++..+...+...|++++|.+.+. ....+.. +...+. .-..++   ..
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999864  5554688999999999999999999999 4444333 332221 111222   22


Q ss_pred             cCCHHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHHHHhcCCCHHH
Q 018924          167 LDDLESAEKIFEEWESQAL---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLATGYRQNSQIHK  242 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~  242 (349)
                      .+..+.+.+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence            2333333345555444321   23778888899999999999999999999998654322111 1222223344678889


Q ss_pred             HHHHHHHHHHHhcccccCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCCchhHHHHh-hhhhcC--cchH
Q 018924          243 AVEAMKKVLAAYQTLVKWKPSV---ESLAACLDYFKDEGDIGGAENFIELLNDKG-FIPTDLQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~-~~~~~g--~~a~  315 (349)
                      +.+.++...+.       .|+.   ....++...+.+.|++++|.+.|+...... .|+...+..+. .+.+.|  ++|.
T Consensus       318 ~~~~~e~~lk~-------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~  390 (409)
T TIGR00540       318 LEKLIEKQAKN-------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA  390 (409)
T ss_pred             HHHHHHHHHHh-------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999888854       5543   556688888999999999999999543332 36666677888 888888  8999


Q ss_pred             HHHHHHH
Q 018924          316 ETLRELY  322 (349)
Q Consensus       316 ~~~~~m~  322 (349)
                      +++++-.
T Consensus       391 ~~~~~~l  397 (409)
T TIGR00540       391 AMRQDSL  397 (409)
T ss_pred             HHHHHHH
Confidence            9998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=2e-12  Score=111.54  Aligned_cols=272  Identities=14%  Similarity=0.022  Sum_probs=194.3

Q ss_pred             CccH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924           10 ARTT-VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA   88 (349)
Q Consensus        10 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   88 (349)
                      .|+. ..+-....+..+.|+++.|.+.+.+..+....++..........+...|+++.|...++.+. +..+ -+..++.
T Consensus       114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~-~~~P-~~~~~l~  191 (409)
T TIGR00540       114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL-EMAP-RHKEVLK  191 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHH
Confidence            4543 33445567788899999999999998775322222344445778889999999999999998 5443 4567788


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH---hhcCCHHHHHHHHHHHHhhc----cCChhhHHHHH
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKAV----KVLNNGYRNVI  161 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li  161 (349)
                      .+...+...|++++|.+.+..+.+.+..++. .....-..++   ...+..+.+.+.+.......    +.+...+..+.
T Consensus       192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a  270 (409)
T TIGR00540       192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA  270 (409)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence            9999999999999999999999987654333 2211111221   33333333333444111222    24777888999


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHHHHHhc
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLATGYRQ  236 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~  236 (349)
                      ..+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.++...+..+. |+  ....++...+.+
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~  347 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMK  347 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHH
Confidence            99999999999999999999864  33321   112222233457888899999888875432 44  556788999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .|++++|.+.|+.....     ...|+...+..+...+.+.|+.++|.+++++...
T Consensus       348 ~~~~~~A~~~le~a~a~-----~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       348 HGEFIEAADAFKNVAAC-----KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             cccHHHHHHHHHHhHHh-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999964443     6689999999999999999999999999997644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=4e-12  Score=103.31  Aligned_cols=313  Identities=13%  Similarity=0.093  Sum_probs=221.9

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHhhcCCCCCcc
Q 018924            8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG----IDKILTMMEADPNVALD   83 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~   83 (349)
                      ..+.+..+||.+|.+-.-    ..-.+++.+|.....+||..|+|+++++.++.|+++.    |.+++.+|+ +.|+.|+
T Consensus       237 k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePs  311 (625)
T KOG4422|consen  237 KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPS  311 (625)
T ss_pred             hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcc
Confidence            356688999999986543    2337899999999999999999999999999998876    457788899 8999999


Q ss_pred             HHHHHHHHHHHhhcCcHHH-HHHHHHHHHHh-------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh-----c
Q 018924           84 WVIYATVGNGYGKVGLLDK-ALAMLKKSEEQ-------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA-----V  150 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~  150 (349)
                      ..+|..+|..+++.++..+ |..++.++...       ...|+...-|...+..|.+..+.+-|.++......|     +
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            9999999999999888754 55555655442       123333246778888888999999998887743333     2


Q ss_pred             cCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhH
Q 018924          151 KVLN---NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW  227 (349)
Q Consensus       151 ~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  227 (349)
                      +|+.   .-|..+....|.....+.-...|+.|.-+-+-|+..+...++++..-.|+++-.-+++..+...|...+...-
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~  471 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR  471 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence            3443   2356777788888999999999999988777888899999999999999999999999999987755555555


Q ss_pred             HHHHHHHhcCC-CH--------HH-----HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          228 YYLATGYRQNS-QI--------HK-----AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       228 ~~li~~~~~~~-~~--------~~-----a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ..++..+++.. +.        ..     |..+++.......+...........+.+.-.+.+.|..++|.++|..+.+.
T Consensus       472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~  551 (625)
T KOG4422|consen  472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK  551 (625)
T ss_pred             HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence            55555555544 11        11     111111110000000122334455667777788999999999999998654


Q ss_pred             C--CCCchhHHHHh-----hhhhcC-cchHHHHHHHHhCC
Q 018924          294 G--FIPTDLQDKLL-----DNVQNG-KSNLETLRELYGNS  325 (349)
Q Consensus       294 ~--~~~~~~~~~l~-----~~~~~g-~~a~~~~~~m~~~~  325 (349)
                      +  .|-....++++     +..+.. ..|..+++-|...+
T Consensus       552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            2  25445556444     333333 78888888886554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.63  E-value=5.3e-12  Score=115.72  Aligned_cols=309  Identities=9%  Similarity=0.008  Sum_probs=180.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV   97 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (349)
                      .++..+...|+.++|+..+++..... .........+...+...|++++|+++|+++. +... -+...+..++..+...
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL-~~dP-~n~~~l~gLa~~y~~~  149 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSL-KKDP-TNPDLISGMIMTQADA  149 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC-CCHHHHHHHHHHHhhc
Confidence            55555555566666666665555110 1111122222345555566666666666665 3232 2234444555666666


Q ss_pred             CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924           98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF  177 (349)
Q Consensus        98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  177 (349)
                      ++.++|++.++++...  .|+. ..+..++..+...++..+|++.++......+.+...+..+..++.+.|-...|.++.
T Consensus       150 ~q~~eAl~~l~~l~~~--dp~~-~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        150 GRGGVVLKQATELAER--DPTV-QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             CCHHHHHHHHHHhccc--Ccch-HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            6666666666666543  2333 333333333333444444666666322333333444444444444444333332222


Q ss_pred             H------------------------------------------------HHHhc-CCCCCc-chH----HHHHHHHHhcC
Q 018924          178 E------------------------------------------------EWESQ-ALCYDT-RIP----NFLIDVYCRNG  203 (349)
Q Consensus       178 ~------------------------------------------------~~~~~-~~~~~~-~~~----~~l~~~~~~~~  203 (349)
                      .                                                .+... +-.|.. ..|    --.+-++...|
T Consensus       227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~  306 (822)
T PRK14574        227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH  306 (822)
T ss_pred             HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence            1                                                11110 001211 111    12344667789


Q ss_pred             cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924          204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA  283 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a  283 (349)
                      +..++.+.|+.+...+.+....+-..+..+|...+++++|..+|+.+...........++......|..++...+++++|
T Consensus       307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A  386 (822)
T PRK14574        307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA  386 (822)
T ss_pred             hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence            99999999999998876544557788999999999999999999999876222224688888888999999999999999


Q ss_pred             HHHHHHHhhCCC------------C--CchhHHH-Hh-hhhhcC--cchHHHHHHHHhCCCCCCccccc
Q 018924          284 ENFIELLNDKGF------------I--PTDLQDK-LL-DNVQNG--KSNLETLRELYGNSLAGNEETLS  334 (349)
Q Consensus       284 ~~~~~~~~~~~~------------~--~~~~~~~-l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~  334 (349)
                      ..+++.+.+..|            |  +-..+.. ++ .+...|  .+|.+.++++...  .|...-+.
T Consensus       387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~  453 (822)
T PRK14574        387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLR  453 (822)
T ss_pred             HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence            999999988422            2  2223333 34 677777  8999999999764  56655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=9.2e-13  Score=107.80  Aligned_cols=284  Identities=15%  Similarity=0.064  Sum_probs=211.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD--ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      .+.++|+++.|++++.-..+.+-+.-...-+.|-..+..  -.++..|.+.-+... ..+- .+......-.+.-...|+
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al-n~dr-yn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL-NIDR-YNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh-cccc-cCHHHhhcCCceeeecCc
Confidence            577899999999999888776433333333333322222  345777777766665 3222 333443334445556899


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE  179 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  179 (349)
                      +++|.+.|++.........  .+...+.-.+-..|+.++|+..|-....-+..+..+...+.+.|-...+..+|.+++.+
T Consensus       506 ~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             HHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            9999999999876422222  23334455677889999999998844444456667788888999999999999999987


Q ss_pred             HHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc
Q 018924          180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK  259 (349)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  259 (349)
                      .... ++.|+.+.+.|...|-+.|+-..|++.+-.--.. ++-+..+...|..-|....-+++++.+|+++.       -
T Consensus       584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-------l  654 (840)
T KOG2003|consen  584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-------L  654 (840)
T ss_pred             hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-------h
Confidence            7664 5778889999999999999999999876543332 44577888889999999999999999999987       7


Q ss_pred             CCCCHHHHHHHHHHH-HhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHH
Q 018924          260 WKPSVESLAACLDYF-KDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETL  318 (349)
Q Consensus       260 ~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~  318 (349)
                      ++|+..-|..++..| .+.|++++|.++++.+.++.|.+..+...++ .....| .++.+.-
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~  716 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYA  716 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHH
Confidence            799999999988766 5689999999999999999899999988888 877777 5554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=2.8e-11  Score=97.53  Aligned_cols=296  Identities=13%  Similarity=0.046  Sum_probs=227.3

Q ss_pred             HHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924           19 MLKLYYK--TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK   96 (349)
Q Consensus        19 li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~   96 (349)
                      +..+..+  .|+|.+|.++..+-.+++-.| ...|..-..+.-+.|+.+.+-.++.+.. +..-.++...+-+.......
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHh
Confidence            4444433  699999999999988876553 4456666777788999999999999998 55445788888889999999


Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-------hhHHHHHHHHhccC
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-------NGYRNVISSLLKLD  168 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-------~~~~~li~~~~~~~  168 (349)
                      .|+.+.|..-++++.+.++.++  .+......+|.+.|++.....++. +.+.+.-.|.       .+|..+++-....+
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHP--EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999988654443  589999999999999999999999 7666665444       35777777776666


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      ..+.-...++...+. ...++..-.+++.-+.++|+.++|.++..+..+++..|+    -.....+.+-++.+.-++..+
T Consensus       244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e  318 (400)
T COG3071         244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAE  318 (400)
T ss_pred             cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHH
Confidence            666655566655443 355666777888899999999999999999998877665    223344667788887777777


Q ss_pred             HHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       249 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      +..+.    .+.  ++..+..|-..|.+.+.+.+|...|+...+. .|+..+|+.+. ++.+.|  .+|.++.++-...-
T Consensus       319 ~~l~~----h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         319 KWLKQ----HPE--DPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHh----CCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            77754    122  4477888888999999999999999966654 36778888888 999999  78888888776544


Q ss_pred             CCCCc
Q 018924          326 LAGNE  330 (349)
Q Consensus       326 ~~p~~  330 (349)
                      .+|+.
T Consensus       392 ~~~~~  396 (400)
T COG3071         392 RQPNL  396 (400)
T ss_pred             cCCCC
Confidence            45544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.60  E-value=2.6e-12  Score=102.54  Aligned_cols=200  Identities=15%  Similarity=0.102  Sum_probs=127.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      ....+..+...+...|++++|...+++.. +... .+...+..+...+...|++++|.+.+++..+..  |+....+..+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~  105 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKAL-EHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence            34556666677777777777777777765 3222 345566667777777777777777777776643  2222466667


Q ss_pred             HHHHhhcCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924          127 LTLYGKYGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL  204 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  204 (349)
                      ...+...|++++|.+.++ ..... .+.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence            777777777777777777 22211 12223455566667777777777777777776643 2334556667777777777


Q ss_pred             HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +++|...+++..+.. ..+...+..+...+...|+.++|..+.+.+..
T Consensus       185 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       185 YKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777777777776652 23455555666667777777777777666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=5.9e-13  Score=113.58  Aligned_cols=268  Identities=14%  Similarity=0.063  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHH-HHhhcCCCCCccHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKIL-TMMEADPNVALDWVIYAT   89 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~   89 (349)
                      ......+..+|.+.+++++|..+|+.+.+...  --+..+|.+.+=-+-+  .+  ++..+ +.+. +.+. -.+.+|.+
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v--~Ls~Laq~Li-~~~~-~sPesWca  426 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EV--ALSYLAQDLI-DTDP-NSPESWCA  426 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hH--HHHHHHHHHH-hhCC-CCcHHHHH
Confidence            35567788999999999999999999987521  1155677777643211  11  22222 2233 2222 56789999


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      +.++|.-.++.+.|++.|++..+  +.|....+|+.+..-+.....+|.|...|+....-.+.+-..|.-+...|.+.++
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek  504 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK  504 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence            99999999999999999999998  5675558999999999999999999999993222222223455567888999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      ++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++....+.+ |+..--..+..+...+++++|+..+++
T Consensus       505 ~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            999999999999865 445666777888899999999999999999987665 454444566677788999999999999


Q ss_pred             HHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          250 VLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       250 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      .++       +.|+ ...|..+...|.+.|+.+.|..-|.-+.+.+|+.
T Consensus       583 Lk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  583 LKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            984       4775 5667788889999999999999999888876643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=4.7e-12  Score=103.73  Aligned_cols=220  Identities=15%  Similarity=0.107  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL  165 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  165 (349)
                      |...+.+.|+-.++.++|...|++..+.+  |....+|+.+.+-|....+...|++-++....-.|.|-..|-.+.++|.
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            33445566677777788888888877743  3333578888888888888888888888555666667777888888888


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE  245 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  245 (349)
                      -.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|.+....|-. +...+..|...|-+.++..+|..
T Consensus       410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence            8888888888888877753 556777888888888888888888888887775533 44677778888888888888888


Q ss_pred             HHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHhhhhhcC-cchHHHHHHHHh
Q 018924          246 AMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLLDNVQNG-KSNLETLRELYG  323 (349)
Q Consensus       246 ~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~a~~~~~~m~~  323 (349)
                      .|.+-++.......+.| ......-|..-+.+.+++++|.........              . ... ++|..+++++++
T Consensus       488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--------------~-~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--------------G-ETECEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--------------C-CchHHHHHHHHHHHHH
Confidence            87777664111111223 112222233445566666666543332222              1 111 677777777765


Q ss_pred             C
Q 018924          324 N  324 (349)
Q Consensus       324 ~  324 (349)
                      .
T Consensus       553 ~  553 (559)
T KOG1155|consen  553 I  553 (559)
T ss_pred             h
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.9e-11  Score=99.23  Aligned_cols=300  Identities=10%  Similarity=-0.015  Sum_probs=213.3

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-----------------------------HHHHHH
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT-----------------------------RLSAYA   59 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-----------------------------ll~~~~   59 (349)
                      ...|...+-.-...+.+.|..+.|.+.|......- +-.-..|..                             +..++-
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~  238 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ  238 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            33444444444445667788888888877765531 111111111                             122333


Q ss_pred             hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC-cchhhHHHHHHHHhhcCC-HH
Q 018924           60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KVNSAYNVILTLYGKYGK-KD  137 (349)
Q Consensus        60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~-~~  137 (349)
                      ...+.+++..-.+.+. ..|++.+...-+....+.-...++|+|+.+|+++.+..+.. +.-.+|+.++-.-..... .-
T Consensus       239 el~q~~e~~~k~e~l~-~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~  317 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLS-SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY  317 (559)
T ss_pred             HHHHHHHHHHHHHHHH-hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence            4445666666666666 66775555555556666777889999999999998764321 121455555433222111 11


Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      -|..+++  ..  +--+.|+..+.+.|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|..-+++..+
T Consensus       318 LA~~v~~--id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  318 LAQNVSN--ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             HHHHHHH--hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            2222222  22  2334678888899999999999999999999875 44566799999999999999999999999999


Q ss_pred             cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924          218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFI  296 (349)
Q Consensus       218 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  296 (349)
                      -++. |...|-.|.++|.-.+.+.-|+-+|+++.       .++| |+..|..|.++|.+.++.++|...|.+....+-.
T Consensus       393 i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-------~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  393 INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKAL-------ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHH-------hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence            7664 88899999999999999999999999998       5577 7899999999999999999999999999888777


Q ss_pred             CchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          297 PTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       297 ~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      +...+..+. .|-+.+  .+|...|++..+
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            778888888 888877  778777766554

>PRK12370 invasion protein regulator; Provisional

Probab=99.58  E-value=8.2e-12  Score=111.80  Aligned_cols=267  Identities=10%  Similarity=-0.082  Sum_probs=171.6

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh---------hcCcHHHHHHHHHHH
Q 018924           45 TYDRYTYCTRLSAYAD-----ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG---------KVGLLDKALAMLKKS  110 (349)
Q Consensus        45 ~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~  110 (349)
                      ..+...|...+.+-..     .+++++|...|++.. +.+. -+...|..+..++.         ..+++++|...+++.
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            3455656555555322     234678888888887 4333 23445555555443         234578899999888


Q ss_pred             HHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc
Q 018924          111 EEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR  190 (349)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  190 (349)
                      .+.  .|+...++..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.... +..
T Consensus       331 l~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~  407 (553)
T PRK12370        331 TEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA  407 (553)
T ss_pred             Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence            874  55555788888888888899999999998544445555667888888888999999999999988875422 222


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH-HH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL-AA  269 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-~~  269 (349)
                      .+..++..+...|++++|...+++......+-++..+..+..++...|++++|.+.+.++..       ..|+..+. +.
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~  480 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNL  480 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHH
Confidence            33344555667888999999988887653222444567777788889999999999888764       25554433 44


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHHHHHHhCC
Q 018924          270 CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETLRELYGNS  325 (349)
Q Consensus       270 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~~~m~~~~  325 (349)
                      +...|...|  +.|...++.+.+............- .+.-.| .+...+++++.+.|
T Consensus       481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  536 (553)
T PRK12370        481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNED  536 (553)
T ss_pred             HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence            444556666  4777777766654221111111122 455555 44455557776653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.57  E-value=7.3e-12  Score=99.94  Aligned_cols=203  Identities=19%  Similarity=0.129  Sum_probs=161.8

Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI  161 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  161 (349)
                      .....+..+...+...|++++|.+.+++..+.  .|+....+..+...+...|++++|.+.++......+.+...+..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            44667788899999999999999999998875  3444468888999999999999999999944444455566788888


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI  240 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  240 (349)
                      ..+...|++++|.+.++...+... ......+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence            899999999999999999886432 223446677888889999999999999998876533 456788888899999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ++|.+.+++..+.      ...+...+..+...+...|+.++|..+.+.+...
T Consensus       186 ~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       186 KDARAYLERYQQT------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999998863      1335666667778888899999999988877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.57  E-value=1.1e-11  Score=111.02  Aligned_cols=150  Identities=9%  Similarity=-0.088  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHH
Q 018924           64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIW  143 (349)
Q Consensus        64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  143 (349)
                      +++|...+++.. +.+. -+..++..+...+...|++++|...|++..+.  .|+...++..+...+...|++++|+..+
T Consensus       320 ~~~A~~~~~~Al-~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        320 MIKAKEHAIKAT-ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             HHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            445555555554 3222 23444444555555555555555555555543  2333234555555555555555555555


Q ss_pred             HHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          144 ELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       144 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      +....-.+.+...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++..
T Consensus       396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            52222112122222222333344455555555555544432111222344444455555555555555555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=6e-11  Score=95.69  Aligned_cols=267  Identities=15%  Similarity=0.054  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|-.-..+.-+.|+.+.+-..+.+..+.--.++...+-+........|+.+.|..-++++. +.+. -+.........
T Consensus       118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-~~~p-r~~~vlrLa~r  195 (400)
T COG3071         118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-EMTP-RHPEVLRLALR  195 (400)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-HhCc-CChHHHHHHHH
Confidence            455667778888999999999999999886445566677778888899999999999999988 5454 45667788999


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      +|.+.|++.....++..+.+.+.-.+..      .+|..+++-....+..+.-...|+......+.++..-.+++.-+.+
T Consensus       196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~  275 (400)
T COG3071         196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR  275 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence            9999999999999999999987755541      3677777777777777776777875555566666777788899999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      .|+.++|.++..+..+++..|+.    ...-.+.+-++.+.-.+..+.-.+..+ -++..+.+|...|.+++.|.+|.+.
T Consensus       276 l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~  350 (400)
T COG3071         276 LGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEA  350 (400)
T ss_pred             cCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999998776662    122244566777777777766555433 2557888999999999999999999


Q ss_pred             HHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      |+..+       ...|+..+|+.+.+++.+.|+..+|.++.++....
T Consensus       351 leaAl-------~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         351 LEAAL-------KLRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHH-------hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99888       56999999999999999999999999999877643

>PF13041 PPR_2: PPR repeat family

Probab=99.55  E-value=1.7e-14  Score=84.18  Aligned_cols=50  Identities=34%  Similarity=0.598  Sum_probs=45.9

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD   60 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~   60 (349)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999998874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.2e-11  Score=102.26  Aligned_cols=280  Identities=13%  Similarity=0.059  Sum_probs=226.0

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924            8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      |...++.....-.+-+...+++.+..++++...+.. +++...+..-|.++...|+..+-.-+=.++. + ..+....+|
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-~-~yP~~a~sW  315 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV-D-LYPSKALSW  315 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH-H-hCCCCCcch
Confidence            455567777777888899999999999999998863 5566677777778889999888777777776 4 333567888


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  167 (349)
                      -++.-.|.-.|+..+|.+.|.+...  +.|.-..+|-.....|...|..+.|...+....+-.+-...-+--+..-|.+.
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence            8899999999999999999998875  45555569999999999999999999998844444444444455667778999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc--Ccc----cchhhHHHHHHHHhcCCCHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK--GRE----IHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~~~~~  241 (349)
                      ++.+.|.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+.....  .+.    ....+++.|..+|.+.+.++
T Consensus       394 ~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence            99999999999988763 667888888888888899999999999877621  111    13456889999999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      +|+..+++.+.      -.+-+..++.++.-.|...|+++.|.+.|++.....+.+..
T Consensus       473 eAI~~~q~aL~------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  473 EAIDYYQKALL------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHHHHHH------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            99999999995      33448899999999999999999999999999887665533

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.55  E-value=7.9e-12  Score=111.04  Aligned_cols=316  Identities=15%  Similarity=0.079  Sum_probs=230.3

Q ss_pred             hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHH
Q 018924            2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDR------YTYCTRLSAYADASDHEGIDKILT   72 (349)
Q Consensus         2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~   72 (349)
                      +.|...|-++.+...|.+...+...|++.+|...|......   ...+|.      .+--.+..+.-..++++.|.+.|.
T Consensus       441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk  520 (1018)
T KOG2002|consen  441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK  520 (1018)
T ss_pred             HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            34566666688888999999999999999999999888765   122333      222335556667788999999999


Q ss_pred             HhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH--Hhhc
Q 018924           73 MMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY--KKAV  150 (349)
Q Consensus        73 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~  150 (349)
                      .+. +..+ .=...|--+.......+...+|...++...+.. ..++ .+++.+...+.....+..|.+-|++.  ....
T Consensus       521 ~Il-kehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np-~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~  596 (1018)
T KOG2002|consen  521 SIL-KEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP-NARSLLGNLHLKKSEWKPAKKKFETILKKTST  596 (1018)
T ss_pred             HHH-HHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc-HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence            887 3222 223334444433444577888999998887742 3444 68888999999999999999877732  2223


Q ss_pred             cCChhhHHHHHHHHhc------------cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          151 KVLNNGYRNVISSLLK------------LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .+|..+.-.|.+.|..            .+..++|+++|.+.++.. +.|...-|.+.-.++..|++..|..+|....+.
T Consensus       597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA  675 (1018)
T ss_pred             CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence            3666666666665542            245788999999988875 667888888999999999999999999999986


Q ss_pred             CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924          219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      ... +..+|-.+.++|...|++..|++.|+...+.    ..-.-+......|.+++.+.|++.+|.+.+.......|.++
T Consensus       676 ~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~  750 (1018)
T KOG2002|consen  676 TSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT  750 (1018)
T ss_pred             Hhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence            542 5678889999999999999999999999876    23344778889999999999999999999988888777444


Q ss_pred             h-hHHHHhhhhh--------------------cC-cchHHHHHHHHhCCCC
Q 018924          299 D-LQDKLLDNVQ--------------------NG-KSNLETLRELYGNSLA  327 (349)
Q Consensus       299 ~-~~~~l~~~~~--------------------~g-~~a~~~~~~m~~~~~~  327 (349)
                      . .||..+...+                    .+ +.|.++|.+|...+-.
T Consensus       751 ~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  751 SVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             hHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3 3444331111                    11 5677888888766533

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.54  E-value=4.3e-11  Score=105.73  Aligned_cols=300  Identities=15%  Similarity=0.098  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      +...-.....+.-.|++++|.+++.+.++.... +...|..|..+|-..|+.+++...+-..- ..+. .|..-|..+..
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p-~d~e~W~~lad  215 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNP-KDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCC-CChHHHHHHHH
Confidence            333333444444458888888888887776433 56677777777777777777776654443 2222 44566666666


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChh-----hHHHHHHHHhcc
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN-----GYRNVISSLLKL  167 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~  167 (349)
                      ...+.|++++|.-.|.+.++..  |+.-..+---+..|-+.|+...|...|.....-.+|...     +-..++..+...
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~  293 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH  293 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence            6666677777776666666542  222123333445555566666665555522222222211     122233344444


Q ss_pred             CCHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCcHHHHHHH-----------------------------------
Q 018924          168 DDLESAEKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENL-----------------------------------  211 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----------------------------------  211 (349)
                      ++-+.|.+.++..... +-..+...++.++..|.+...++.|...                                   
T Consensus       294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~  373 (895)
T KOG2076|consen  294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE  373 (895)
T ss_pred             hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence            4445555444444331 1122233344444444444444443333                                   


Q ss_pred             --------------------------HHHHHHcC--cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC
Q 018924          212 --------------------------VNHEKLKG--REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS  263 (349)
Q Consensus       212 --------------------------~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~  263 (349)
                                                ...+.+.+  +.-+...|.-+..+|...|++.+|+.+|..+...     ...-+
T Consensus       374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~  448 (895)
T KOG2076|consen  374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQN  448 (895)
T ss_pred             CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccc
Confidence                                      33333333  2223445677778888888999999999888865     33345


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      ...|..+..+|...|..++|.+.+.......|.+...-..|. .+.+.|  ++|.+.+..|.
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            778888888888899999999999888888777766667777 777888  88888888774

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=3.8e-11  Score=99.19  Aligned_cols=197  Identities=15%  Similarity=0.046  Sum_probs=145.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      |--+..+|....+.++..+.|.+...-.+.++.+|..-.+...-.+++++|..-|++..... +-++..|--+..+..+.
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence            55555666666777777777776555556666677777777777777888888777777643 33455566666667788


Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH--HHHHHHHHhcCCh
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL--AACLDYFKDEGDI  280 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~  280 (349)
                      ++++++...|++.+++ ++.-+..|+.....+..+++++.|.+.|+..++..+...++..+..++  -.++..-.+ +++
T Consensus       442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~  519 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence            8999999999998876 334677899999999999999999999999997644333333333332  233333244 899


Q ss_pred             hhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          281 GGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       281 ~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      ..|..+++...+.+|.....|..|. .-++.|  ++|+++|++-.
T Consensus       520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999998888999999 888888  99999998753

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=6e-11  Score=93.10  Aligned_cols=272  Identities=14%  Similarity=0.101  Sum_probs=203.6

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      -+..+.-+|.+.|-+.|..+.|+.+...+.++ +.+-+  ......|..-|...|-+|.|+.+|..+. +.+. .-....
T Consensus        67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~-de~e-fa~~Al  144 (389)
T COG2956          67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLV-DEGE-FAEGAL  144 (389)
T ss_pred             hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh-cchh-hhHHHH
Confidence            35666678889999999999999999998875 11111  1244556777888999999999999998 5333 445566


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc---hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV---NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..|+..|-...+|++|+++-+++...+..+..   ...|.-|...+....+.+.|...+.......+-....--.+.+..
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~  224 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE  224 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence            78999999999999999999999876554433   124556666667788999999999854444444455555677888


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  244 (349)
                      ...|++..|.+.++.+.+.+...-..+...|..+|...|+.++....+.++.+....++.  -..+...-....-.+.|.
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq  302 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQ  302 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHH
Confidence            999999999999999999876666677889999999999999999999999886543333  344444444455667788


Q ss_pred             HHHHHHHHHhcccccCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhC
Q 018924          245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKD---EGDIGGAENFIELLNDK  293 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~  293 (349)
                      .++.+-+..       +|+...+..++..-..   .|...+....++.|...
T Consensus       303 ~~l~~Ql~r-------~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         303 AYLTRQLRR-------KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             HHHHHHHhh-------CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            777777744       8999999999987533   34455566667777654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=4.2e-12  Score=99.66  Aligned_cols=232  Identities=11%  Similarity=0.040  Sum_probs=198.1

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      -+.+..+|.+.|.+.+|++.|+.....  .|-. .+|..|-..|.+..++..|+.++.......+.|.....-+.+.+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence            378999999999999999999988875  3444 6799999999999999999999996666666666666677888889


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      .++.++|.++++...+.. +.++....++...|.-.++++.|...|+++.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            999999999999998864 556667777777888899999999999999999987 888999999999999999999999


Q ss_pred             HHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHH
Q 018924          247 MKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLREL  321 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m  321 (349)
                      |.++...     .-.|+  ...|-.+-......||+..|.+.|+.....+......++.+. .-.+.|  ++|..++...
T Consensus       381 f~RAlst-----at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  381 FQRALST-----ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHhh-----ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            9999876     55554  467888888888999999999999999999888889999999 888888  8999999887


Q ss_pred             HhCCCCCCc
Q 018924          322 YGNSLAGNE  330 (349)
Q Consensus       322 ~~~~~~p~~  330 (349)
                      ...  .|+-
T Consensus       456 ~s~--~P~m  462 (478)
T KOG1129|consen  456 KSV--MPDM  462 (478)
T ss_pred             hhh--Cccc
Confidence            653  4544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.53  E-value=1.4e-10  Score=99.18  Aligned_cols=295  Identities=13%  Similarity=0.061  Sum_probs=182.8

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      ....|-.....+-..|++..|..++....+.... +...|-..+..-....+++.|..+|.+..   ...|+..+|.--+
T Consensus       583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~  658 (913)
T KOG0495|consen  583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSA  658 (913)
T ss_pred             chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHh
Confidence            3344444445555556666666666666554322 44566666666666666666666666655   2345555555555


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      +.---.++.++|.+++++..+.  .|+-...|-.+...+-+.++.+.|...|..-...++-.+..|-.+...--+.|++-
T Consensus       659 ~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~  736 (913)
T KOG0495|consen  659 NLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV  736 (913)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence            5555556666666666666553  34443456666666666666666666665333334444445555555555566666


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .|..+++..+..+ +-+...|-..|++-.+.|..+.|..+..+..+. ++.+-..|..-|....+.++-....+.+++  
T Consensus       737 rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk--  812 (913)
T KOG0495|consen  737 RARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK--  812 (913)
T ss_pred             hHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh--
Confidence            6666666665554 445556666666666666666666666555543 222444555555555555554444433332  


Q ss_pred             HHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          252 AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       252 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                              +.-|+.....+...+....+++.|++.|.+..+.++..-.+|..+. .+.+.|  ++-.+++......
T Consensus       813 --------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~  880 (913)
T KOG0495|consen  813 --------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA  880 (913)
T ss_pred             --------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence                    3456667777888889999999999999999999998889999999 999999  6777888877653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.50  E-value=3e-12  Score=112.55  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             hhhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC
Q 018924            2 QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA   81 (349)
Q Consensus         2 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~   81 (349)
                      -.|...|+.||.+||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.            .
T Consensus        14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------e   80 (1088)
T KOG4318|consen   14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------E   80 (1088)
T ss_pred             HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------C
Confidence            46788999999999999999999999999998 9999987777767777777777777766655433            3


Q ss_pred             ccHHHHHHHHHHHhhcCcHHH
Q 018924           82 LDWVIYATVGNGYGKVGLLDK  102 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~  102 (349)
                      |...||..|..+|...|++..
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH
Confidence            667777777777777777544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.48  E-value=6.4e-12  Score=110.56  Aligned_cols=260  Identities=17%  Similarity=0.164  Sum_probs=179.7

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924           34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      .++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|+ -...+.+...|+.++.+...+++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC---------
Confidence            45677888999999999999999999999999988 999888 6677788899999999999999988765         


Q ss_pred             hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCCcchH
Q 018924          114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE-SQALCYDTRIP  192 (349)
Q Consensus       114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~  192 (349)
                        .|.. .+|..|..+|...||... .+..+   .       -...+...+...|.-..-..++-.+. ..+.-||..  
T Consensus        80 --ep~a-Dtyt~Ll~ayr~hGDli~-fe~ve---q-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--  143 (1088)
T KOG4318|consen   80 --EPLA-DTYTNLLKAYRIHGDLIL-FEVVE---Q-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--  143 (1088)
T ss_pred             --CCch-hHHHHHHHHHHhccchHH-HHHHH---H-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence              4555 799999999999999876 22222   1       12233444455554444444443322 122334432  


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHH
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD  272 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~  272 (349)
                       ..+......|.++.+.+++..+...... .+  +..++.-+.....+  ..++.......    .+ .|++.+|..++.
T Consensus       144 -n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~ntp--vekLl~~cksl----~e-~~~s~~l~a~l~  212 (1088)
T KOG4318|consen  144 -NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVDNTP--VEKLLNMCKSL----VE-APTSETLHAVLK  212 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccCCch--HHHHHHHHHHh----hc-CCChHHHHHHHH
Confidence             3445556677788888877766543211 11  11124444443332  22222222221    13 699999999999


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCCchh-HHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccccc
Q 018924          273 YFKDEGDIGGAENFIELLNDKGFIPTDL-QDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLS  334 (349)
Q Consensus       273 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~  334 (349)
                      +-.-.|+++.|..++.+|++.|.|-..+ |..++ +   .+  ..+..+++-|...|+.|+..|+.
T Consensus       213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence            9999999999999999999998865554 45555 5   33  77888899999999999999864

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.46  E-value=1.2e-09  Score=96.81  Aligned_cols=273  Identities=15%  Similarity=0.074  Sum_probs=203.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      ...+.....|++++|..++.+.. +... .....|.+|...|-..|+.+++...+-....  ..|.....|..+......
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvI-kqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVI-KQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH-HhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHh
Confidence            33444444599999999999998 6454 6778899999999999999999887755543  455555899999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchH----HHHHHHHHhcCcHHHH
Q 018924          133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIP----NFLIDVYCRNGLLEKA  208 (349)
Q Consensus       133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a  208 (349)
                      .|.++.|.-.|.....-.+++...+---+..|-+.|+...|..-|.++.....+.|..-.    ...+..+...++.+.|
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999666666677777777788899999999999999999886432333222    2356667778888999


Q ss_pred             HHHHHHHHHc-CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH----------------------hc----------
Q 018924          209 ENLVNHEKLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA----------------------YQ----------  255 (349)
Q Consensus       209 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------~~----------  255 (349)
                      .+.++..... +-..+...++.++..|.+...++.|......+...                      ..          
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            9988877652 22234556677777777777777777776666650                      00          


Q ss_pred             ------------------------ccccCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hh
Q 018924          256 ------------------------TLVKWKP--SVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DN  307 (349)
Q Consensus       256 ------------------------~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~  307 (349)
                                              ....+.|  +...|.-+..+|...|++.+|..+|..+..... .+...|..+. +|
T Consensus       380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence                                    0012112  344566677789999999999999999998754 6667888888 99


Q ss_pred             hhcC--cchHHHHHHHHhCCCCCCcc
Q 018924          308 VQNG--KSNLETLRELYGNSLAGNEE  331 (349)
Q Consensus       308 ~~~g--~~a~~~~~~m~~~~~~p~~~  331 (349)
                      ...|  ++|++.|+.....  .|+..
T Consensus       460 ~~l~e~e~A~e~y~kvl~~--~p~~~  483 (895)
T KOG2076|consen  460 MELGEYEEAIEFYEKVLIL--APDNL  483 (895)
T ss_pred             HHHhhHHHHHHHHHHHHhc--CCCch
Confidence            9988  8999999998764  55544

>PF13041 PPR_2: PPR repeat family

Probab=99.45  E-value=3.2e-13  Score=78.72  Aligned_cols=47  Identities=30%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  234 (349)
                      |..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~   48 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL   48 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=3e-11  Score=94.94  Aligned_cols=233  Identities=10%  Similarity=0.014  Sum_probs=193.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY  130 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (349)
                      -+.+.++|.+.|-+.+|.+.++.-. +  -.|-..||..|-..|.+..+.+.|+.++.+-.+.  .|.......-+.+.+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL-~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSL-T--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHh-h--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence            3678889999999999999999876 3  2366778888999999999999999999998874  444413445677888


Q ss_pred             hhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924          131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN  210 (349)
Q Consensus       131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  210 (349)
                      -..++.++|.++|+......+.+......+...|.-.++++.|..+++.+++.|+ .+...|+.+.-+|.-.++++-+..
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence            8899999999999966666666777777888889999999999999999999985 567789989999999999999999


Q ss_pred             HHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          211 LVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       211 ~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      -|.+....--.|+  ...|-.+.......|++..|.+.|+-.+..      -.-+...++.|.-.-.+.|++++|..+++
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            9998876433333  446777888888999999999999999853      23356788888888889999999999999


Q ss_pred             HHhhCCC
Q 018924          289 LLNDKGF  295 (349)
Q Consensus       289 ~~~~~~~  295 (349)
                      ......|
T Consensus       454 ~A~s~~P  460 (478)
T KOG1129|consen  454 AAKSVMP  460 (478)
T ss_pred             HhhhhCc
Confidence            9888755

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=6.9e-11  Score=97.03  Aligned_cols=107  Identities=13%  Similarity=0.101  Sum_probs=64.8

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ  301 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  301 (349)
                      |+.....|...|-+.|+..+|.+++-.--       ...| |..+..=|...|....-++++..+|++..- ..|+..-|
T Consensus       591 dp~ilskl~dlydqegdksqafq~~ydsy-------ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~~kw  662 (840)
T KOG2003|consen  591 DPAILSKLADLYDQEGDKSQAFQCHYDSY-------RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQSKW  662 (840)
T ss_pred             CHHHHHHHHHHhhcccchhhhhhhhhhcc-------cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccHHHH
Confidence            34445555555555555555555444332       2233 444544445555556666677777765543 24788889


Q ss_pred             HHHh--hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924          302 DKLL--DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG  338 (349)
Q Consensus       302 ~~l~--~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~  338 (349)
                      ..++  ++.+.|  +.|+++++...++ +..|...+..+++
T Consensus       663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr  702 (840)
T KOG2003|consen  663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR  702 (840)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence            9888  777777  8999999998765 5556555554443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.7e-10  Score=97.04  Aligned_cols=283  Identities=10%  Similarity=-0.008  Sum_probs=218.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +.........-|...+++.+..++.+.+. +... +....+..-|.++...|+..+-..+=.++.+.  .|+.+.+|-++
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll-e~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV  318 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELL-EKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV  318 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHH-hhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence            44555556666778899999999999988 5443 66666667778999999988888888888875  55665799999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCcH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI-PNFLIDVYCRNGLL  205 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~  205 (349)
                      ..-|...|...+|.+.|.....-.+.-...|-....++...|..++|...+...-+.  -|..+. +--+.--|.+.++.
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccH
Confidence            999999999999999999322222222357888899999999999999999887763  222111 11244457889999


Q ss_pred             HHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC-CCHHHHHHHHHHHHhcCChhhHH
Q 018924          206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK-PSVESLAACLDYFKDEGDIGGAE  284 (349)
Q Consensus       206 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~  284 (349)
                      +.|.+.|.......+ -|+...+-+.-.....+.+.+|..+|+..+........-. -...+++.|..+|.+.+++++|.
T Consensus       397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            999999999887543 3677778787777788999999999999884311111111 24567889999999999999999


Q ss_pred             HHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924          285 NFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG  338 (349)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~  338 (349)
                      ..++......+.+..+|.++. .|...|  +.|.+.|.+-.  .+.||..+...+|+
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence            999999999999999999999 999888  99999999875  47898877655554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.6e-10  Score=103.01  Aligned_cols=315  Identities=12%  Similarity=-0.023  Sum_probs=227.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC--CCCcc--
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEME----ENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP--NVALD--   83 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--   83 (349)
                      |...|-.+...+-+ ++...++.+|....    ..+-++-+...|.+...+...|+++.|...|.......  ...++  
T Consensus       413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~  491 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG  491 (1018)
T ss_pred             cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence            55666655555444 44455577776654    44555777888999999999999999998888776220  11122  


Q ss_pred             ----HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924           84 ----WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN  159 (349)
Q Consensus        84 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  159 (349)
                          ..+--.+..++-..++.+.|.+.|..+...  .|.-...|.-++......+...+|...++........++..++.
T Consensus       492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl  569 (1018)
T KOG2002|consen  492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL  569 (1018)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence                222234666777778899999999998875  34443466666655555678888998888555555666677778


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHh------------cCcHHHHHHHHHHHHHcCcccchhh
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCR------------NGLLEKAENLVNHEKLKGREIHVKS  226 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~  226 (349)
                      +...+.+...+..|.+-|....+.-. .+|+.+.-.|...|.+            .+..++|.++|.+..+..+. |...
T Consensus       570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA  648 (1018)
T KOG2002|consen  570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA  648 (1018)
T ss_pred             HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence            88888888888888887776655322 2465555556665543            24578999999999987765 7888


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC-C-CCchhHHHH
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG-F-IPTDLQDKL  304 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~l  304 (349)
                      -|-+...++..|++.+|..+|.+..+.     . .-+..+|..+.++|..+|++..|.++|+...+.. . .+......|
T Consensus       649 ANGIgiVLA~kg~~~~A~dIFsqVrEa-----~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L  722 (1018)
T KOG2002|consen  649 ANGIGIVLAEKGRFSEARDIFSQVREA-----T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL  722 (1018)
T ss_pred             ccchhhhhhhccCchHHHHHHHHHHHH-----H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            888999999999999999999999985     2 3456788899999999999999999999887763 3 556677888


Q ss_pred             h-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCC
Q 018924          305 L-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEG  338 (349)
Q Consensus       305 ~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~  338 (349)
                      . ++.+.|  .+|.+.+.....  ..|...++.+.++
T Consensus       723 ara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  723 ARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHH
Confidence            8 888888  788877766655  4677776655444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.43  E-value=3.7e-09  Score=90.78  Aligned_cols=307  Identities=13%  Similarity=0.047  Sum_probs=224.7

Q ss_pred             hhhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC
Q 018924            3 KMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNV   80 (349)
Q Consensus         3 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~   80 (349)
                      ++...|+.-+...|-.=...|-..|.+-.+..+....+.-|+.-.  ..||..-...|.+.+.++-|..+|.... . -+
T Consensus       469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al-q-vf  546 (913)
T KOG0495|consen  469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL-Q-VF  546 (913)
T ss_pred             HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH-h-hc
Confidence            345566777777777777777777777777777777776665422  2377777777888888888888887776 3 22


Q ss_pred             CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924           81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV  160 (349)
Q Consensus        81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  160 (349)
                      +.+...|...+..--..|..++...+|++.....+  .....|......+-..|+...|..++...-.-.+.+...|...
T Consensus       547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa  624 (913)
T KOG0495|consen  547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA  624 (913)
T ss_pred             cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            24566677777666777888888888888887533  3335777777778888899888888884444445566778888


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCC
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQ  239 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~  239 (349)
                      +..-....+++.|..+|.+...  ..|+..+|..-+....-.+..++|.+++++..+.-  |+ ...|..+.+.+-+.++
T Consensus       625 vKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~  700 (913)
T KOG0495|consen  625 VKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMEN  700 (913)
T ss_pred             HHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHH
Confidence            8888888889999999888876  35677777777777777888899999888887743  33 3466777777888888


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~  315 (349)
                      .+.|.+.|..-.+       .-|+ ...|..|.+.=-+.|.+-.|+.++++.+-.+|.+...|-..| .-.+.|  +.|.
T Consensus       701 ie~aR~aY~~G~k-------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  701 IEMAREAYLQGTK-------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             HHHHHHHHHhccc-------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            8888888877552       3454 455666666667788999999999999988898889999988 888888  6777


Q ss_pred             HHHHHHHhC
Q 018924          316 ETLRELYGN  324 (349)
Q Consensus       316 ~~~~~m~~~  324 (349)
                      .+..+..+.
T Consensus       774 ~lmakALQe  782 (913)
T KOG0495|consen  774 LLMAKALQE  782 (913)
T ss_pred             HHHHHHHHh
Confidence            666665543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=5.2e-10  Score=96.34  Aligned_cols=242  Identities=17%  Similarity=0.150  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcC----CCC-CccHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHh------hcC
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEAD----PNV-ALDWVIY-ATVGNGYGKVGLLDKALAMLKKSEEQ------IKG  116 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~------~~~  116 (349)
                      .+...+...|...|+++.|+.++++..+.    .|. .|...+- +.+...|...+++++|..+|+++...      ...
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            36666888899999999999888776511    121 1333332 34677888899999999999888653      122


Q ss_pred             CcchhhHHHHHHHHhhcCCHHHHHHHHH--HHHh-h----ccCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhc---CC
Q 018924          117 AKVNSAYNVILTLYGKYGKKDDVLRIWE--LYKK-A----VKVLN-NGYRNVISSLLKLDDLESAEKIFEEWESQ---AL  185 (349)
Q Consensus       117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~-~----~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~  185 (349)
                      |....+++.|..+|.+.|++++|...++  +... .    ..|.. ..++.++..|+..+++++|..+++...+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            3443567788888999999999988887  2111 1    11222 23667778888889999999888876542   11


Q ss_pred             CCC----cchHHHHHHHHHhcCcHHHHHHHHHHHHHcC----c--cc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          186 CYD----TRIPNFLIDVYCRNGLLEKAENLVNHEKLKG----R--EI-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       186 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                      .++    ..+++.|...|...|++++|.++++......    -  .+ ....++.+...|.+.+++.+|.++|.+...-.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    3467888899999999999999998876421    1  11 13356778888888889988988888876542


Q ss_pred             ccccc-CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          255 QTLVK-WKPS-VESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       255 ~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                       ...| -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus       440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             1112 1232 4678888999999999999998887665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.40  E-value=6e-10  Score=91.76  Aligned_cols=233  Identities=14%  Similarity=0.067  Sum_probs=144.0

Q ss_pred             CChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924           62 SDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV  139 (349)
Q Consensus        62 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  139 (349)
                      +..+.++.-+.++.......|+  ...|..+...|...|+.++|...|++..+.  .|+...+|+.+...+...|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            4556666666666523233332  345667777888888888888888888774  455557888888888888888888


Q ss_pred             HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      ...|+......+.+..+|..+..++...|++++|.+.++...+..  |+..........+...+++++|...|.+.....
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            888884444444445677777888888888888888888887753  333222222223345677888888886655322


Q ss_pred             cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924          220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       220 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                       .|+...+ .+.  ....|+...+ +.+..+.+.......+.| ....|..+...+...|++++|...|++..+..+++.
T Consensus       196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence             2222221 222  2234554443 344444432000011122 235677778888888888888888888888776655


Q ss_pred             hhHHH
Q 018924          299 DLQDK  303 (349)
Q Consensus       299 ~~~~~  303 (349)
                      .-+..
T Consensus       271 ~e~~~  275 (296)
T PRK11189        271 VEHRY  275 (296)
T ss_pred             HHHHH
Confidence            44444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=5e-10  Score=96.42  Aligned_cols=241  Identities=17%  Similarity=0.156  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhc------CCC
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-----G-ITYDRY-TYCTRLSAYADASDHEGIDKILTMMEA------DPN   79 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~   79 (349)
                      ..+...|...|...|+++.|..++++..+.     | ..|... ..+.+...|...+++++|..+|+++..      -..
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            455666999999999999999999998764     2 123443 344477788899999999988887742      112


Q ss_pred             CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH--H--HHhh
Q 018924           80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE--L--YKKA  149 (349)
Q Consensus        80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--~--~~~~  149 (349)
                      .+.-..+++.|..+|.+.|++++|...+++..+-      ...+.....++.+...+...+++++|..+++  .  ....
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            2223456778888999999999998888776442      1123333457788888999999999999998  2  1112


Q ss_pred             ccCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhcC----C---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-
Q 018924          150 VKVLN----NGYRNVISSLLKLDDLESAEKIFEEWESQA----L---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-  217 (349)
Q Consensus       150 ~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  217 (349)
                      ..++.    .+++.+...|...|++++|.++++++....    .   .-....++.|...|.+.++++.|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            22333    478999999999999999999999887521    1   11234567788999999999999999986543 


Q ss_pred             ---cCcc-cc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          218 ---KGRE-IH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       218 ---~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                         .|+. |+ ..+|..|...|...|+++.|.++.......
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence               2321 22 357899999999999999999999888743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.35  E-value=7.3e-09  Score=90.34  Aligned_cols=284  Identities=16%  Similarity=0.161  Sum_probs=189.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc---
Q 018924           21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV---   97 (349)
Q Consensus        21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---   97 (349)
                      ..+.+.|++++|++.++.-... +.............+.+.|+.++|..+|..+. +.++ .+..-|..+..+..-.   
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li-~rNP-dn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELI-DRNP-DNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHhhhccc
Confidence            4468899999999999876554 33234466777888999999999999999999 5453 4444445555555222   


Q ss_pred             --CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHH-HHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924           98 --GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus        98 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a  173 (349)
                        .+.+...++|+++...-  |.. .+...+.-.+..-..+.... .++. +...|+|   .+|+.+-..|.......-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s-~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRS-DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccc-cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence              35788889999987753  333 33333333333323444333 3444 5555554   3566776777766666656


Q ss_pred             HHHHHHHHhc----C----------CCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          174 EKIFEEWESQ----A----------LCYDT--RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       174 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      .+++......    +          -+|+.  .++.-+...|...|++++|.+.+++.++..+. .+..|..-...+-+.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence            6666655432    1          12333  24456677788999999999999999986543 366788888999999


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCc--h----hHHH--Hh-h
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPT--D----LQDK--LL-D  306 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~----~~~~--l~-~  306 (349)
                      |++.+|.+.++.+...       .+ |...-+-....+.+.|++++|.+++....+.+. |..  .    .|..  .. +
T Consensus       242 G~~~~Aa~~~~~Ar~L-------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a  314 (517)
T PF12569_consen  242 GDLKEAAEAMDEAREL-------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA  314 (517)
T ss_pred             CCHHHHHHHHHHHHhC-------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999853       44 555666667788899999999999998877653 211  1    2222  22 7


Q ss_pred             hhhcC--cchHHHHHHH
Q 018924          307 NVQNG--KSNLETLREL  321 (349)
Q Consensus       307 ~~~~g--~~a~~~~~~m  321 (349)
                      |.+.|  ..|++.|..+
T Consensus       315 ~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  315 YLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            77777  5555544433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.34  E-value=4.5e-09  Score=78.99  Aligned_cols=198  Identities=13%  Similarity=0.042  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL  129 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (349)
                      +...|.-.|...|+...|.+-+++.. +.+. .+..+|..+...|.+.|..+.|.+.|++..+.  .|+...+.|.....
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL-~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKAL-EHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence            34455666777777777777777766 4443 45566667777777777777777777777663  34443577777777


Q ss_pred             HhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924          130 YGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK  207 (349)
Q Consensus       130 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  207 (349)
                      +|..|++++|...|+  +......-...+|..+.-+..+.|+.+.|...|+...+.. +......-.+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence            777777777777777  3333444444567777776777777777777777776653 2233455566666777777777


Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      |...++.....+. ++..+.-..|..--..|+-+.+-++=..+...
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            7777777766555 56666666666666667766666665555554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.33  E-value=5.3e-09  Score=78.59  Aligned_cols=202  Identities=17%  Similarity=0.043  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      .+...|.-.|...|+...|..-+++..+.  .|+...+|..+...|.+.|+.+.|.+.|+....-.+-+..+.|.....+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            34556888899999999999999999985  5666579999999999999999999999955555556667889999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      |..|.+++|...|+.....-.- .-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.......|++-.|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence            9999999999999998864221 22456778888888999999999999999986654 455677788888899999999


Q ss_pred             HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      ..+++....      +..++..+....|+.-.+.|+.+.+.+.=..+.+..|
T Consensus       193 r~~~~~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         193 RLYLERYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             HHHHHHHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            999998876      4458999888888888899999999888777777644

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.32  E-value=6.5e-09  Score=85.64  Aligned_cols=217  Identities=13%  Similarity=-0.010  Sum_probs=153.3

Q ss_pred             CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHH
Q 018924           27 GNFEKLDSLMHEMEENG-ITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA  103 (349)
Q Consensus        27 g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  103 (349)
                      +..+.++.-+.+++... ..|+  ...|..+...+...|+.++|...|++.. +.+. .+...|+.+...+...|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL-ALRP-DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            44566777888887542 2222  3467788888999999999999999988 5443 5678899999999999999999


Q ss_pred             HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924          104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  183 (349)
                      ...|++..+.  .|+...+|..+..++...|++++|.+.|+...... |+..........+...++.++|...+......
T Consensus       118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999999874  56555788999999999999999999999433333 33322222223344677899999999776543


Q ss_pred             CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc---Ccc---cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          184 ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK---GRE---IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      . .++...+ .+  .....|+...+ ..+..+.+.   .+.   .....|..+...+...|++++|...|+++.+.
T Consensus       195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2 3333222 22  33345555444 344444321   111   13457889999999999999999999999964

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=1.2e-08  Score=83.20  Aligned_cols=195  Identities=11%  Similarity=0.027  Sum_probs=109.7

Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      ......+++.|+.+-++.++.  .+.....|-.-...+...+++++|.-.|+....--|-+...|.-++.+|...|.+.+
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            334445555555555555542  222223444444555666666666666663333333445566666666666666666


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHH-HHHHh-cCcHHHHHHHHHHHHHcCcccch-hhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          173 AEKIFEEWESQALCYDTRIPNFLI-DVYCR-NGLLEKAENLVNHEKLKGREIHV-KSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      |...-+...+. ++.+..+.+.+. ..+.- ..--++|.++++.-....  |+. ...+.+...+...|..++++.++++
T Consensus       387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            66555544432 233333333321 11111 122356666666555522  332 2345556666777777777777777


Q ss_pred             HHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       250 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      .+       ...||....+.|.+.+...+.+++|.+.|....+.+|.+..
T Consensus       464 ~L-------~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  464 HL-------IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HH-------hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            77       34777777777777777777777777777777777665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=2.2e-09  Score=89.08  Aligned_cols=230  Identities=17%  Similarity=0.109  Sum_probs=181.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924           17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK   96 (349)
Q Consensus        17 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~   96 (349)
                      ......+.-.|+...|..-|+..+.....++. .|.-+...|....+.++..+.|+... +.+. -+..+|..-...+.-
T Consensus       330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~-~ldp-~n~dvYyHRgQm~fl  406 (606)
T KOG0547|consen  330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE-DLDP-ENPDVYYHRGQMRFL  406 (606)
T ss_pred             HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH-hcCC-CCCchhHhHHHHHHH
Confidence            33334455679999999999999987554333 37777888999999999999999988 5555 456677777788888


Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI  176 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  176 (349)
                      .+++++|..-|++.+.  +.|.....|-.+..+..+.+.++++...|+.....+|..+..|+.....+...++++.|.+.
T Consensus       407 L~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~  484 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ  484 (606)
T ss_pred             HHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence            8999999999999987  45666567778888888999999999999988888888889999999999999999999999


Q ss_pred             HHHHHhcCCCC-----C--cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          177 FEEWESQALCY-----D--TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       177 ~~~~~~~~~~~-----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      |+...+.....     +  +.+.-.++..- =.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++
T Consensus       485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             HHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99988743211     1  11222222222 238899999999999986655 456789999999999999999999999


Q ss_pred             HHHH
Q 018924          250 VLAA  253 (349)
Q Consensus       250 ~~~~  253 (349)
                      ....
T Consensus       563 sa~l  566 (606)
T KOG0547|consen  563 SAQL  566 (606)
T ss_pred             HHHH
Confidence            7753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.26  E-value=1.6e-08  Score=88.23  Aligned_cols=256  Identities=16%  Similarity=0.173  Sum_probs=183.0

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDW-VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY  133 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  133 (349)
                      ...+...|++++|++.++.-.  ..+ +|. .........+.+.|+.++|..+|..+.+.+  |+...-|..+..+..-.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~--~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNE--KQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhh--hhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence            445678899999999998754  244 554 445678899999999999999999999975  45523555555555222


Q ss_pred             -----CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924          134 -----GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL-ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEK  207 (349)
Q Consensus       134 -----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  207 (349)
                           .+.+....+|+...... |.......+.-.+.....+ ..+..++..+...|++   .+++.|-..|....+.+-
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence                 24666777887444443 4333333333333332233 3455666777788864   367777777776666666


Q ss_pred             HHHHHHHHHHc----C----------cccchh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHH
Q 018924          208 AENLVNHEKLK----G----------REIHVK--SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAAC  270 (349)
Q Consensus       208 a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l  270 (349)
                      ...++......    +          -.|...  ++..+...|...|++++|+++++++++.       .|+ +..|..-
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-------tPt~~ely~~K  234 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-------TPTLVELYMTK  234 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCcHHHHHHH
Confidence            66666655432    1          123332  4456677888999999999999999965       676 6778888


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCC
Q 018924          271 LDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSL  326 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~  326 (349)
                      .+.+-+.|++++|.+.++..+..+..|...-+... .+.+.|  ++|.+++....+.+.
T Consensus       235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  235 ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            88999999999999999999999888888877788 999999  999999999877665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.24  E-value=8.4e-10  Score=89.66  Aligned_cols=254  Identities=15%  Similarity=0.102  Sum_probs=163.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      ++.+.-.|++..++.-.+ ......+.+......+.+++...|+.+.   ++.++. ... .|.......+...+...++
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~-~~~-~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIK-KSS-SPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS--TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhc-cCC-ChhHHHHHHHHHHHhCccc
Confidence            344556788888886665 3322222234456667888888998774   345554 333 5666666656555554455


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE  179 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  179 (349)
                      -+.+..-+++..........+.........+...|++++|++++..   +  .+.......+..|.+.++++.|.+.++.
T Consensus        82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~---~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK---G--GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT---T--TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc---c--CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555554433322222212333344566778999999988872   1  3445666788899999999999999999


Q ss_pred             HHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 018924          180 WESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ  255 (349)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  255 (349)
                      |.+.  ..|. +...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+...   
T Consensus       157 ~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---  229 (290)
T PF04733_consen  157 MQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---  229 (290)
T ss_dssp             HHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---
T ss_pred             HHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence            9874  3343 33334444433    34689999999998765 456888889999999999999999999999874   


Q ss_pred             ccccCCC-CHHHHHHHHHHHHhcCCh-hhHHHHHHHHhhCCC
Q 018924          256 TLVKWKP-SVESLAACLDYFKDEGDI-GGAENFIELLNDKGF  295 (349)
Q Consensus       256 ~~~~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~  295 (349)
                          ..| +..+...++.+....|+. +.+.+.+.++....|
T Consensus       230 ----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  230 ----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             ----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             ----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence                344 567778888888888888 667788888877644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=3.2e-07  Score=76.34  Aligned_cols=304  Identities=12%  Similarity=0.085  Sum_probs=154.0

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHH
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LDWVIY   87 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~   87 (349)
                      ..|+...|++.|+.=.+-+.++.|..+++...-.  .|+..+|.-...-=-+.|++..+.++|+......|-. .+...|
T Consensus       170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf  247 (677)
T KOG1915|consen  170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF  247 (677)
T ss_pred             CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3566666666666666666666666666665542  3566666555555555666666666665544111110 112222


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch------------------------------------------hhHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------------------------------------------SAYNV  125 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------------------~~~~~  125 (349)
                      .+....=.++..++.|.-+|+-..+.-+.....                                          .+|--
T Consensus       248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd  327 (677)
T KOG1915|consen  248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD  327 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence            222222233444444444444433321111111                                          23333


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhccCChh--hHH----HHHHHH----hccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924          126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNN--GYR----NVISSL----LKLDDLESAEKIFEEWESQALCYDTRIPNFL  195 (349)
Q Consensus       126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~----~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  195 (349)
                      .+..-...|+.+...++|+....+++|-..  -|.    ..|+.+    ....+.+.+.++++..++. ++....|+..+
T Consensus       328 ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKi  406 (677)
T KOG1915|consen  328 YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKI  406 (677)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHH
Confidence            333334444555555555433334443211  010    011111    1334445555555444442 23333333332


Q ss_pred             HHHH----HhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924          196 IDVY----CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC  270 (349)
Q Consensus       196 ~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  270 (349)
                      =-.|    .+..++..|.+++....-  .-|-..+|...|..-.+.++++....++.+.++       ..| |..+|...
T Consensus       407 WlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-------~~Pe~c~~W~ky  477 (677)
T KOG1915|consen  407 WLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-------FSPENCYAWSKY  477 (677)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cChHhhHHHHHH
Confidence            2222    234455555555554443  335555666666666666777777777777763       345 55666666


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCC--CCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          271 LDYFKDEGDIGGAENFIELLNDKGF--IPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                      ...=...|+.+.|..+|..+.+...  .+...|.+.| .-...|  +.|..+++++.+.
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            6666678888888888888877633  2334566666 444555  7888888888765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.20  E-value=2.1e-07  Score=79.34  Aligned_cols=92  Identities=12%  Similarity=-0.038  Sum_probs=45.7

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCCc--chHHHHHHHHHh
Q 018924          125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-CYDT--RIPNFLIDVYCR  201 (349)
Q Consensus       125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~  201 (349)
                      .+...+...|++++|...++......+.+...+..+...+...|++++|...+++...... .++.  ..|..+...+..
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            3444555556666666665533333333344455555555556666666666555544321 1111  123345555555


Q ss_pred             cCcHHHHHHHHHHHH
Q 018924          202 NGLLEKAENLVNHEK  216 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~  216 (349)
                      .|++++|..++++..
T Consensus       199 ~G~~~~A~~~~~~~~  213 (355)
T cd05804         199 RGDYEAALAIYDTHI  213 (355)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            566666666665554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.6e-08  Score=78.98  Aligned_cols=300  Identities=12%  Similarity=0.035  Sum_probs=175.4

Q ss_pred             hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924            4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD   83 (349)
Q Consensus         4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~   83 (349)
                      |...|+.....-|++++..+.+..++.+|++++..-.++..+ +......|..+|....++..|-..++++. .  .-|.
T Consensus         1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~-q--l~P~   76 (459)
T KOG4340|consen    1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLG-Q--LHPE   76 (459)
T ss_pred             CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hChH
Confidence            344555555666888898899999999999999888776432 77788889999999999999999999997 2  3366


Q ss_pred             HHHHHH-HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHH--HHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924           84 WVIYAT-VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILT--LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV  160 (349)
Q Consensus        84 ~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  160 (349)
                      ..-|.. -...+.+++.+.+|+++...|...   +.. ..-..-+.  .....+++..+..+++...  ...+..+.+..
T Consensus        77 ~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L-~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~  150 (459)
T KOG4340|consen   77 LEQYRLYQAQSLYKACIYADALRVAFLLLDN---PAL-HSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINL  150 (459)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHH-HHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccc
Confidence            555542 356677888899999998887542   111 11111111  2234566666666665211  01122233333


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-------------cchh--
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-------------IHVK--  225 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--  225 (349)
                      .-...+.|+++.|.+-|+...+-+--.....||.-+ +..+.|+++.|.+...++.++|++             ||+.  
T Consensus       151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv  229 (459)
T KOG4340|consen  151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV  229 (459)
T ss_pred             hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence            333446777777777777766533222233555333 444566777777777777666543             1111  


Q ss_pred             -------------hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          226 -------------SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       226 -------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                                   .+|.-...+.+.++++.|.+.+..|--.    ..-..|+.|...+.-. --.+++....+-+.-+..
T Consensus       230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR----aE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~  304 (459)
T KOG4340|consen  230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR----AEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ  304 (459)
T ss_pred             cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc----ccccCCchhhhHHHHh-cccCCccccHHHHHHHHh
Confidence                         1222222345566777776666655321    1223344554433211 123445555555555555


Q ss_pred             CCCCCchhHHHHh-hhhhcC--cchHHHHH
Q 018924          293 KGFIPTDLQDKLL-DNVQNG--KSNLETLR  319 (349)
Q Consensus       293 ~~~~~~~~~~~l~-~~~~~g--~~a~~~~~  319 (349)
                      ..|-+..+|..++ .||++.  +-|-+++.
T Consensus       305 ~nPfP~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  305 QNPFPPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             cCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            5565666677777 777766  55554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.18  E-value=3.8e-07  Score=77.81  Aligned_cols=262  Identities=11%  Similarity=0.093  Sum_probs=161.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA----DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      ...+...|++++|.+++++..+.. +.|...+.. ...+.    ..+..+.+.+.+...  ....+........+...+.
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence            345677899999999999988763 224434442 22222    245555566655542  2233233445556778899


Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh--hhHHHHHHHHhccCCHH
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLN--NGYRNVISSLLKLDDLE  171 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~  171 (349)
                      ..|++++|.+.+++..+..  |+....+..+...+...|++++|...++......+  |+.  ..|..+...+...|+++
T Consensus       126 ~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         126 EAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999854  44436888999999999999999999993333332  232  24557888899999999


Q ss_pred             HHHHHHHHHHhcCCCCC-cchH-H--HHHHHHHhcCcHHHHHHHHHHHHHc---CcccchhhHH--HHHHHHhcCCCHHH
Q 018924          172 SAEKIFEEWESQALCYD-TRIP-N--FLIDVYCRNGLLEKAENLVNHEKLK---GREIHVKSWY--YLATGYRQNSQIHK  242 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~~~~~~  242 (349)
                      +|..++++.......+. .... +  .++.-+...|..+.+.++ +.+...   ........+.  ....++...|+.++
T Consensus       204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence            99999999864322111 1111 1  223333344544444433 333221   1111122344  23445677888999


Q ss_pred             HHHHHHHHHHHhcccccCCC--C----HHHHHHHHH--HHHhcCChhhHHHHHHHHhhC
Q 018924          243 AVEAMKKVLAAYQTLVKWKP--S----VESLAACLD--YFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~p--~----~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      |..++..+...     ...+  .    ..+-..++.  ++...|+.++|.+.+......
T Consensus       283 a~~~L~~l~~~-----~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         283 LDKLLAALKGR-----ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHH-----HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999888764     2110  1    111122222  356788999998888877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3.2e-07  Score=75.05  Aligned_cols=301  Identities=14%  Similarity=0.024  Sum_probs=200.7

Q ss_pred             CCCccHHHHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH
Q 018924            8 GLARTTVVYNSMLKLYYK--TGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW   84 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   84 (349)
                      .++|+......-+.++++  .++...|...+-.+... -++-|+.....+..++...|+.++|+..|++.. .  +.|..
T Consensus       189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~--~dpy~  265 (564)
T KOG1174|consen  189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-C--ANPDN  265 (564)
T ss_pred             ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-h--CChhh
Confidence            344444444444555544  34444455544444332 355577788899999999999999999999877 3  33433


Q ss_pred             H-HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           85 V-IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        85 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      . ......-.+.+.|+.++...+...+.... .... ..|..-+.......++..|+.+-+......+.+...|-.-...
T Consensus       266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta-~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l  343 (564)
T KOG1174|consen  266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA-SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRL  343 (564)
T ss_pred             hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch-hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHH
Confidence            2 22333445667888888888877776532 1233 4566666677778888888888774444444445556666677


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH-HHHh-cCCCHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA-TGYR-QNSQIH  241 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~  241 (349)
                      +...+++++|.-.|+...... +-+...|..|+..|...|++.+|...-+...+. ..-+..+...+. ..|. ...--+
T Consensus       344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE  421 (564)
T KOG1174|consen  344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE  421 (564)
T ss_pred             HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence            888999999999999887753 456788999999999999999988776655442 122445544442 2222 223457


Q ss_pred             HHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHH
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLET  317 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~  317 (349)
                      +|..++++.+       .+.|+- ...+.+...|...|..+.+..+++..... .+|....+.+. .+....  ++|++.
T Consensus       422 KAKkf~ek~L-------~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~  493 (564)
T KOG1174|consen  422 KAKKFAEKSL-------KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEY  493 (564)
T ss_pred             HHHHHHHhhh-------ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHH
Confidence            8999999887       557763 45566777889999999999999988765 46666677777 555444  677777


Q ss_pred             HHHHHh
Q 018924          318 LRELYG  323 (349)
Q Consensus       318 ~~~m~~  323 (349)
                      |....+
T Consensus       494 y~~ALr  499 (564)
T KOG1174|consen  494 YYKALR  499 (564)
T ss_pred             HHHHHh
Confidence            665543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.13  E-value=8.5e-07  Score=76.60  Aligned_cols=303  Identities=14%  Similarity=0.098  Sum_probs=193.1

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+.+.|+++.-.+....++++|++.|......+.. |...|.-+.-.-++.++++.......++. .... .....|..+
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LL-ql~~-~~ra~w~~~  149 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLL-QLRP-SQRASWIGF  149 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHH-Hhhh-hhHHHHHHH
Confidence            45677888888888889999999999998876432 56677777766777788887777766665 3222 445556777


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcC-CcchhhHHHHH------HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSAYNVIL------TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      ..++--.|+...|..++++..+.... |+. ..+.-..      ....++|..+.|.+.+.+....+......-..-...
T Consensus       150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~-~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l  228 (700)
T KOG1156|consen  150 AVAQHLLGEYKMALEILEEFEKTQNTSPSK-EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL  228 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence            77888888888888888888775432 333 3333222      234456777777777764444333333333445556


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHh-cCcHHH----------------------------------
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPN-FLIDVYCR-NGLLEK----------------------------------  207 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~----------------------------------  207 (349)
                      +.+.+++++|..++..+...+  ||..-|+ .+..++.+ .+..+.                                  
T Consensus       229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~  306 (700)
T KOG1156|consen  229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI  306 (700)
T ss_pred             HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence            667777777777777777653  4443333 22222221 111110                                  


Q ss_pred             HHHHHHHHHHcCc----------------------------------------------ccchhh--HHHHHHHHhcCCC
Q 018924          208 AENLVNHEKLKGR----------------------------------------------EIHVKS--WYYLATGYRQNSQ  239 (349)
Q Consensus       208 a~~~~~~~~~~~~----------------------------------------------~~~~~~--~~~li~~~~~~~~  239 (349)
                      .-.++..+.++|+                                              +|....  +-.++..|-+.|+
T Consensus       307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence            1111111112221                                              123222  3446677788899


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchH
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~  315 (349)
                      ++.|..+++.++.       -.|+. ..|..-.+.+.+.|++++|..++.+..+.+.+|...-..-. ...+..  ++|.
T Consensus       387 ~~~A~~yId~AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~  459 (700)
T KOG1156|consen  387 YEVALEYIDLAID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE  459 (700)
T ss_pred             HHHHHHHHHHHhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence            9999999999984       47764 45555567788999999999999999988777766554555 556666  8888


Q ss_pred             HHHHHHHhCCC
Q 018924          316 ETLRELYGNSL  326 (349)
Q Consensus       316 ~~~~~m~~~~~  326 (349)
                      ++.....+.|.
T Consensus       460 ~~~skFTr~~~  470 (700)
T KOG1156|consen  460 EVLSKFTREGF  470 (700)
T ss_pred             HHHHHhhhccc
Confidence            88888877775

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=6.9e-09  Score=84.38  Aligned_cols=251  Identities=12%  Similarity=0.064  Sum_probs=166.0

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      ++-+.-.|++..++.-.+ .. ......+.....-+.+++...|+.+.++   .++... ..|+. .+...+...+...+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l-~av~~la~y~~~~~   80 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPEL-QAVRLLAEYLSSPS   80 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCC-HHHHHHHHHHCTST
T ss_pred             HHHHHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhH-HHHHHHHHHHhCcc
Confidence            344556799998886666 44 3333344555566888999999877654   343332 35555 56655655555445


Q ss_pred             CHHHHHHHHH-HHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924          135 KKDDVLRIWE-LYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV  212 (349)
Q Consensus       135 ~~~~a~~~~~-~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  212 (349)
                      +-+.++.-++ ....... .+..........+...|++++|.+++...      .+.......+..|.+.++++.|.+.+
T Consensus        81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l  154 (290)
T PF04733_consen   81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKEL  154 (290)
T ss_dssp             THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555555554 2112222 22333334445667889999999888642      34566777889999999999999999


Q ss_pred             HHHHHcCcccchhhHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          213 NHEKLKGREIHVKSWYYLATGYR----QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       213 ~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      +.|.+.+  .|. +...+..++.    ..+.+.+|..+|+++.+      ...++..+.+.+..+....|++++|.+++.
T Consensus       155 ~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~  225 (290)
T PF04733_consen  155 KNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD------KFGSTPKLLNGLAVCHLQLGHYEEAEELLE  225 (290)
T ss_dssp             HHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC------CS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9998753  343 3333444433    34579999999999864      567888999999999999999999999999


Q ss_pred             HHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhCCCCCC
Q 018924          289 LLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGNSLAGN  329 (349)
Q Consensus       289 ~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~~~~p~  329 (349)
                      +....++.++.+...++ +....|   +.+.+.+.++...  .|+
T Consensus       226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~  268 (290)
T PF04733_consen  226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPN  268 (290)
T ss_dssp             HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTT
T ss_pred             HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCC
Confidence            99988887888888888 666666   3577788887763  454

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12854 PPR_1: PPR repeat

Probab=99.10  E-value=1.2e-10  Score=61.00  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=28.2

Q ss_pred             hCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018924            7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEME   40 (349)
Q Consensus         7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~   40 (349)
                      +|++||..+||+||++|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788888888888888888888888888888873

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=5.8e-08  Score=82.49  Aligned_cols=255  Identities=12%  Similarity=0.006  Sum_probs=179.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924           21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL  100 (349)
Q Consensus        21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  100 (349)
                      .-+.+.|++.+|.-.|+...+.+.. +...|..|.......++-..|+..+++.. +.+. -+....-.|.-.|...|.-
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl-~LdP-~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCL-ELDP-TNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHhhhhhH
Confidence            3467889999999999998887543 66789988888888888888998888887 5444 4566777888889999999


Q ss_pred             HHHHHHHHHHHHhhcCCcchhhHHHHH---------HHHhhcCCHHHHHHHHH-H-HHhhccCChhhHHHHHHHHhccCC
Q 018924          101 DKALAMLKKSEEQIKGAKVNSAYNVIL---------TLYGKYGKKDDVLRIWE-L-YKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      ..|.+.++.-+...+  .-  .|....         ..+..........++|- + ...+..+|...+..|.-.|--.|+
T Consensus       370 ~~Al~~L~~Wi~~~p--~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKP--KY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             HHHHHHHHHHHHhCc--cc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            999998888765321  11  111110         12222233344455555 2 233334777778888888888899


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      +++|...|+.++... +-|..+||.|...++...+.++|...|++.++.  +|+ +.....|..+|...|.+++|...|-
T Consensus       446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999988854 456778999999999999999999999999884  454 3455667778899999999999888


Q ss_pred             HHHHHhcc----cccCCCCHHHHHHHHHHHHhcCChhhHHH
Q 018924          249 KVLAAYQT----LVKWKPSVESLAACLDYFKDEGDIGGAEN  285 (349)
Q Consensus       249 ~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  285 (349)
                      .++.....    .....++...|..|=.++.-.++.|.+.+
T Consensus       523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            87765222    11122334566666666666666664443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=2.5e-06  Score=71.29  Aligned_cols=82  Identities=6%  Similarity=-0.035  Sum_probs=56.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--
Q 018924          235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--  311 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--  311 (349)
                      .++.++..|.+++-.++       |.-|...+|...|..=.+.++++....+++...+.+|.+-.+|.... .-...|  
T Consensus       415 IRq~~l~~ARkiLG~AI-------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt  487 (677)
T KOG1915|consen  415 IRQLNLTGARKILGNAI-------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT  487 (677)
T ss_pred             HHHcccHHHHHHHHHHh-------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence            34555666666666665       66777777777777777777888888888888777777777777766 555555  


Q ss_pred             cchHHHHHHHHh
Q 018924          312 KSNLETLRELYG  323 (349)
Q Consensus       312 ~~a~~~~~~m~~  323 (349)
                      +.|..+|.-..+
T Consensus       488 dRaRaifelAi~  499 (677)
T KOG1915|consen  488 DRARAIFELAIS  499 (677)
T ss_pred             HHHHHHHHHHhc
Confidence            677777776654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.00  E-value=9.3e-07  Score=82.59  Aligned_cols=233  Identities=14%  Similarity=0.090  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc---cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL---DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN  124 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  124 (349)
                      ...|-..|.-....++.++|.++.++....-++.-   -...|.++++.-..-|.-+...++|++..+-   .+.-.+|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence            34677777777788888888888877763333321   2345666777766777777777888887662   22224777


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHhcC
Q 018924          125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVYCRNG  203 (349)
Q Consensus       125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  203 (349)
                      .|...|.+.+.+++|.++++.+...+......|...+..+.+..+-+.|..++.+.++.-.. -........+..-.+.|
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            88888888888888888888444444555567778888888888888888888777664111 02333444555556778


Q ss_pred             cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChh
Q 018924          204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIG  281 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~  281 (349)
                      +.+++..+|+......++ -...|+..|..-.++|+.+.+..+|++++..     ++.|-  -..|...+..=...|+-.
T Consensus      1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l-----~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-----KLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCChhHhHHHHHHHHHHHHhcCchh
Confidence            888888888877765544 4567888888888888888888888888876     66664  245666666555566655


Q ss_pred             hHHHHHHH
Q 018924          282 GAENFIEL  289 (349)
Q Consensus       282 ~a~~~~~~  289 (349)
                      .++.+=.+
T Consensus      1689 ~vE~VKar 1696 (1710)
T KOG1070|consen 1689 NVEYVKAR 1696 (1710)
T ss_pred             hHHHHHHH
Confidence            55544333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.96  E-value=1.9e-07  Score=71.89  Aligned_cols=160  Identities=20%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh
Q 018924           52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG  131 (349)
Q Consensus        52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (349)
                      ..+-..+...|+-+....+..... . ..+.+....+.++....+.|++..|...|++...  +.|+...+|+.+.-+|.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~-~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald  145 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSA-I-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD  145 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhh-c-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence            555566666777777666666654 2 2224444555577777777777777777777765  34444467777777777


Q ss_pred             hcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH
Q 018924          132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL  211 (349)
Q Consensus       132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  211 (349)
                      +.|+.++|..-|.....-.+-+....+.+.-.+.-.|+.+.|..++......+ .-|..+-..+..+....|+++.|..+
T Consensus       146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            77777777777774444444445566777777777777777777777776654 33555666677777777777777777


Q ss_pred             HHHHH
Q 018924          212 VNHEK  216 (349)
Q Consensus       212 ~~~~~  216 (349)
                      ...-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            65443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=1.1e-07  Score=80.85  Aligned_cols=220  Identities=12%  Similarity=0.092  Sum_probs=158.6

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924           58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD  137 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  137 (349)
                      +.+.|++.+|.-.|+... ..++ -+...|.-|.......++-..|+..+++..+  ..|+...+.-.|.-.|...|.-.
T Consensus       295 lm~nG~L~~A~LafEAAV-kqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAV-KQDP-QHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHhcCCchHHHHHHHHHH-hhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHH
Confidence            457788888888888877 5454 6778888888888888888889999988887  46666678888888888888888


Q ss_pred             HHHHHHHHHHhhccCCh---------hhHHHHHHHHhccCCHHHHHHHHHHHH-hcCCCCCcchHHHHHHHHHhcCcHHH
Q 018924          138 DVLRIWELYKKAVKVLN---------NGYRNVISSLLKLDDLESAEKIFEEWE-SQALCYDTRIPNFLIDVYCRNGLLEK  207 (349)
Q Consensus       138 ~a~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~  207 (349)
                      .|++.++.....-+|-.         ..-..  .............++|-++. ..+..+|..+...|.-.|.-.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            88888882222111100         00000  11122223344555555544 44444777788888888889999999


Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHH
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENF  286 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~  286 (349)
                      |...|+..+...+. |...||.|...++...+.++|+..|++++       .++|+- .....|.-+|...|.+++|...
T Consensus       449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rAL-------qLqP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRAL-------QLQPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHH-------hcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            99999998886554 67789999999999999999999999998       557863 4455666678889999998877


Q ss_pred             HHHHh
Q 018924          287 IELLN  291 (349)
Q Consensus       287 ~~~~~  291 (349)
                      |-.+.
T Consensus       521 lL~AL  525 (579)
T KOG1125|consen  521 LLEAL  525 (579)
T ss_pred             HHHHH
Confidence            65443

>PF12854 PPR_1: PPR repeat

Probab=98.94  E-value=1.4e-09  Score=56.94  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924           79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKS  110 (349)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  110 (349)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666655

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=1.2e-05  Score=71.08  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=88.8

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDY  273 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~  273 (349)
                      ....+.+.+..++|...+.+.....+ .....|......+...|++++|.+.|....       .+.|+ .....++..+
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-------~ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVAL-------ALDPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-------hcCCCCcHHHHHHHHH
Confidence            33444555555666555555544321 233445555556667788889999888887       56775 4667788888


Q ss_pred             HHhcCChhhHHH--HHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          274 FKDEGDIGGAEN--FIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       274 ~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                      +.+.|+..-|..  ++..+.+.++.+...|..+. .+-+.|  +.|.+.|....+.
T Consensus       728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            899998887777  99999999999999999999 888888  8888988887654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=1.5e-07  Score=82.19  Aligned_cols=219  Identities=12%  Similarity=0.116  Sum_probs=170.4

Q ss_pred             CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH
Q 018924           79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR  158 (349)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  158 (349)
                      ..+|-+..-..+...+...|-...|..+|+++          ..|...+.+|...|+..+|..+...... -+||...|.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc  461 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC  461 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence            34555666667888999999999999999885          5788889999999999999988883333 678889999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  238 (349)
                      .+.+......-+++|.++.+....+       .-..+.....+.++++++.+.|+.-.+.++ .-..+|-.+..+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHh
Confidence            9888887777788888888764332       111122223347889999998887776443 25667888888888889


Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cch
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSN  314 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a  314 (349)
                      ++..|.+.|....       ...|| ...|+.+-.+|.+.|+-.+|...+++..+.+..+...|.+.+ ...+-|  ++|
T Consensus       534 k~q~av~aF~rcv-------tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  534 KEQAAVKAFHRCV-------TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             hhHHHHHHHHHHh-------hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            9999999999988       44674 577999999999999999999999999888777777888888 777877  888


Q ss_pred             HHHHHHHHh
Q 018924          315 LETLRELYG  323 (349)
Q Consensus       315 ~~~~~~m~~  323 (349)
                      ++.+.++..
T Consensus       607 ~~A~~rll~  615 (777)
T KOG1128|consen  607 IKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHH
Confidence            888887754

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=5.2e-07  Score=78.92  Aligned_cols=223  Identities=14%  Similarity=0.083  Sum_probs=172.2

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA   88 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   88 (349)
                      .+|--..=..+...+.+.|-...|+.+|++..         .|..++.+|...|+-.+|..+..+.. +  -+|+...|.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc  461 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYC  461 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHH
Confidence            34444444556777888999999999998764         45668889999999999999888877 4  348888888


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      .+.+.....--+++|.++++....+        +-..+.....+.+++.++.+.|+....-.+.-..+|-....+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence            8888888888888888888775432        22223333345789999999998333333445567888888888999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      ++..|.+.|..-.... +.+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+......|.+++|.+.+.
T Consensus       534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHH
Confidence            9999999998877643 34567799999999999999999999999998773 366678888888889999999999999


Q ss_pred             HHHHH
Q 018924          249 KVLAA  253 (349)
Q Consensus       249 ~~~~~  253 (349)
                      ++...
T Consensus       612 rll~~  616 (777)
T KOG1128|consen  612 RLLDL  616 (777)
T ss_pred             HHHHh
Confidence            98865

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.91  E-value=5.7e-06  Score=66.38  Aligned_cols=295  Identities=12%  Similarity=0.040  Sum_probs=203.9

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH-
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCT---RLSAYADASDHEGIDKILTMMEADPNVALDWVIY-   87 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-   87 (349)
                      ++.-.--|...+...|++..|+.-|....+.    |+..|.+   -...|...|+-..|+.-+.+..   ..+||-..- 
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~AR  109 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMAAR  109 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHHHH
Confidence            4444555677778888999999999888764    3334443   3456778888888887777776   455765442 


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhh------------HHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSA------------YNVILTLYGKYGKKDDVLRIWELYKKAVKVLN  154 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (349)
                      -.-...+.+.|.+++|..-|+...+..+.... ..+            ....+..+...|+...|+........-.+.|.
T Consensus       110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence            23456788999999999999999876432111 011            22334456678999999999986666667778


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh----HHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS----WYYL  230 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l  230 (349)
                      ..|..-..+|...|++..|+.-++...+.. ..++..+..+-..+...|+.+.+....++..+.+  ||...    |..+
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence            888889999999999999998888777654 4456666678888899999999999999998844  55432    2111


Q ss_pred             ---------HHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924          231 ---------ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLNDKGFI  296 (349)
Q Consensus       231 ---------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  296 (349)
                               +......++|.++++-.+..++.       .|.     ...+..+-.++...|++.+|.+.-.+.....+.
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~-------ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-------EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-------CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence                     12235567788888777777754       343     233455566777888999999988888887777


Q ss_pred             CchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          297 PTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       297 ~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      +..++.--. +|.-..  +.|+.-|+...+
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            666665555 554433  555555554443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.91  E-value=1.9e-05  Score=68.59  Aligned_cols=168  Identities=10%  Similarity=0.029  Sum_probs=85.9

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----------
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYD---TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----------  221 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------  221 (349)
                      .|..+...|-..|+.+.|..+|++..+...+.-   ..+|-.....-.+..+++.|.++.++.....-.           
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            355666666677777777777776665332211   123333334444455666666666554421100           


Q ss_pred             ------cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          222 ------IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       222 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                            .+...|...+..--..|-++....+|+++++.     .+.- +........-+-...-++++.+++++-....+
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-----riaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-----RIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----hcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence                  01223444455445556677777777777655     3221 11111111112233445666666665555433


Q ss_pred             -CCc-hhHHHHh--hhhhcC----cchHHHHHHHHhCCCCCCc
Q 018924          296 -IPT-DLQDKLL--DNVQNG----KSNLETLRELYGNSLAGNE  330 (349)
Q Consensus       296 -~~~-~~~~~l~--~~~~~g----~~a~~~~~~m~~~~~~p~~  330 (349)
                       |+. ..|+..+  ...+.|    +.|.++|++..+ |+.|..
T Consensus       543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~  584 (835)
T KOG2047|consen  543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH  584 (835)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence             332 3566666  333444    678888888877 666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.90  E-value=7.2e-06  Score=71.06  Aligned_cols=307  Identities=12%  Similarity=0.072  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      ..|..++. +.+.+++...+++.+.+.+. .+-...|.....-.+...|+-++|....+.-. +.++ -+.++|..+.-.
T Consensus         9 ~lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~gl-r~d~-~S~vCwHv~gl~   84 (700)
T KOG1156|consen    9 ALFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGL-RNDL-KSHVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHh-ccCc-ccchhHHHHHHH
Confidence            33455555 45678899999999888874 33344566665556778899999999998877 6565 778899999888


Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  173 (349)
                      +-...++++|++.|.....  +.|+....|.-+.-.-...|+++.............+.....|..++.++.-.|+...|
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999887  46666578887777777888888877776643344444456688888888899999999


Q ss_pred             HHHHHHHHhcC-CCCCcchHHHHHH------HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          174 EKIFEEWESQA-LCYDTRIPNFLID------VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       174 ~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      ..++++..+.. -.|+...+.-...      .....|.++.|.+.+..-...- .-....-..-...+.+.+++++|..+
T Consensus       163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            99999988754 2456655543332      2345788888888776554321 11222233445667889999999999


Q ss_pred             HHHHHHHhcccccCCCCHHHHHHHHH-HHHh-cCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHH
Q 018924          247 MKKVLAAYQTLVKWKPSVESLAACLD-YFKD-EGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRE  320 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~~~~~~~ll~-~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~  320 (349)
                      +...+..       .||..-|.-.+. ++.+ .+..+....+|....+..+ ....-..+- .+....   +..-..+..
T Consensus       242 y~~Ll~r-------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~  313 (700)
T KOG1156|consen  242 YRRLLER-------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP-RHECPRRLPLSVLNGEELKEIVDKYLRP  313 (700)
T ss_pred             HHHHHhh-------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc-ccccchhccHHHhCcchhHHHHHHHHHH
Confidence            9999954       787666555444 4433 3333333466666665533 111111111 111112   455566777


Q ss_pred             HHhCCCCCCcccccC
Q 018924          321 LYGNSLAGNEETLSG  335 (349)
Q Consensus       321 m~~~~~~p~~~t~~~  335 (349)
                      +.++|+.+-...+.+
T Consensus       314 ~l~Kg~p~vf~dl~S  328 (700)
T KOG1156|consen  314 LLSKGVPSVFKDLRS  328 (700)
T ss_pred             HhhcCCCchhhhhHH
Confidence            777777654444433

>PLN02789 farnesyltranstransferase

Probab=98.90  E-value=3.1e-06  Score=69.98  Aligned_cols=209  Identities=10%  Similarity=-0.077  Sum_probs=136.1

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      +-..+...+..++|+.+..++++.  .|+...+|+.-..++...| ++++++..++......+-+..+|+.....+.+.|
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            333444556677777777777763  4444456766666666666 5677777777444444444455665544455555


Q ss_pred             CH--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CC----
Q 018924          169 DL--ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQ----  239 (349)
Q Consensus       169 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----  239 (349)
                      +.  +.+..+++.+.+.. +-|..+|+....++...|+++++.+.++++.+.++. |...|+.....+.+.   |.    
T Consensus       121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence            42  56777777777764 456777877777778888888888888888887765 566676665555443   22    


Q ss_pred             HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKD----EGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ  309 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~  309 (349)
                      .++++++..+++..       .| |...|+.+...+..    .++..+|..++.+.....+.+......++ .|+.
T Consensus       199 ~e~el~y~~~aI~~-------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        199 RDSELKYTIDAILA-------NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHHHh-------CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence            24677777777743       55 55667666666665    24456688888777766666677777777 7765

>PLN02789 farnesyltranstransferase

Probab=98.89  E-value=7.9e-06  Score=67.61  Aligned_cols=216  Identities=13%  Similarity=0.007  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      .+++.+-..+...++.++|+.+..++++.+.. +..+|+..-.++...| ++++++..++++. ..+. .+..+|+....
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~np-knyqaW~~R~~  114 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVA-EDNP-KNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHCC-cchHHhHHHHH
Confidence            34555556667788999999999999986432 4446776666777777 6799999999987 5444 45556765555


Q ss_pred             HHhhcCcH--HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc---
Q 018924           93 GYGKVGLL--DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL---  167 (349)
Q Consensus        93 ~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---  167 (349)
                      .+.+.|+.  +++..+++++.+.  .|....+|+-...++...|+++++++.++......+-+...|+.....+.+.   
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence            55666653  6788888888874  4444479999999999999999999999944444455666777766665554   


Q ss_pred             CCH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          168 DDL----ESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       168 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      |..    +.......++.+.. +-|...|+-+...+...    ++..+|...+.+..+.++. +......|+..|+.
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence            222    45667776776654 55677888787777763    3456688888777665433 56667777777765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=9.8e-07  Score=70.51  Aligned_cols=190  Identities=14%  Similarity=0.054  Sum_probs=123.3

Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC-cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChh---hH
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA-KVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNN---GY  157 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~  157 (349)
                      .....+..+...+...|++++|...|+++....+.. ....++..+..++...|++++|...++......+.+..   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            456667778888999999999999999887753321 11136677888889999999999999843333332332   35


Q ss_pred             HHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH
Q 018924          158 RNVISSLLKL--------DDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY  228 (349)
Q Consensus       158 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  228 (349)
                      ..+..++...        |+++.|.+.++.+.+..  |+. ..+..+... .   ....      ...        ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~---~~~~------~~~--------~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-D---YLRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-H---HHHH------HHH--------HHHH
Confidence            5555555544        67778888888877653  332 222221111 0   0000      000        0112


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924          229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  294 (349)
                      .+...+.+.|++++|...++...+.++   +-......+..+..++.+.|++++|..+++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            455678889999999999999986511   011235678888899999999999999988887653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.86  E-value=1.3e-06  Score=69.75  Aligned_cols=188  Identities=11%  Similarity=-0.028  Sum_probs=106.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC-Cc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNV-AL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAY  123 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~  123 (349)
                      ....+..+...+...|+++.|...++++. .... .| ...++..+..++...|++++|...++++.+..+..+. ..++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34456666677777888888888887776 3221 11 1235566777778888888888888887764332221 0134


Q ss_pred             HHHHHHHhhc--------CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924          124 NVILTLYGKY--------GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL  195 (349)
Q Consensus       124 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  195 (349)
                      ..+..++...        |++++|.+.|+......+-+...+..+.....    .      .....        .....+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~------~~~~~--------~~~~~~  172 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----L------RNRLA--------GKELYV  172 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----H------HHHHH--------HHHHHH
Confidence            4455555543        66777777777333333322222222211100    0      00000        011235


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcc-c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGRE-I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...|.+.|++++|...++...+..+. | ....+..+..++...|++++|..+++.+...
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55677777777777777777764321 1 2456677777777777777777777766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.85  E-value=5.2e-06  Score=77.88  Aligned_cols=231  Identities=10%  Similarity=0.050  Sum_probs=176.5

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV   85 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   85 (349)
                      |-+...|-.-|..+.+.++.++|.+++++.+.. +++-.   ...|.++++.-..-|.-+...++|++.. +..  -...
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc-qyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC-QYC--DAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH-Hhc--chHH
Confidence            335677999999999999999999999999864 22211   2467777777777788888999999998 322  3345


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVISS  163 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~  163 (349)
                      +|..|...|.+.+.+++|.++|+.|.+.-- -.. .+|...+..+.+.++-+.|..++.....-.+-  ......-.+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~-~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR-KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh-hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            678999999999999999999999998633 333 79999999999999999999999933333332  22334455555


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHHHHHhcCCCHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLATGYRQNSQIH  241 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~  241 (349)
                      -.+.|+.+.+..+|+...... +--...|+.+++.-.+.|+.+.++.+|++....++.|--  ..|...+..--.+|+-+
T Consensus      1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            678999999999999988764 445678999999999999999999999999998776542  34555555555566644


Q ss_pred             HHHHH
Q 018924          242 KAVEA  246 (349)
Q Consensus       242 ~a~~~  246 (349)
                      .+..+
T Consensus      1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred             hHHHH
Confidence            44433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=2e-06  Score=66.38  Aligned_cols=156  Identities=12%  Similarity=-0.016  Sum_probs=83.2

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 018924          124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG  203 (349)
Q Consensus       124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  203 (349)
                      ..+-..+...|+-+....+........+-|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            3444455555555555555442222333333344445555556666666666666655543 555566666666666666


Q ss_pred             cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924          204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA  283 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a  283 (349)
                      +.+.|..-|.+..+..+. ++..++.+.-.+.-.|+++.|..++......      -.-|...-..+.......|++++|
T Consensus       149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHH
Confidence            666666666665553322 3444555555566666666666666665542      112444445555555566666666


Q ss_pred             HHHH
Q 018924          284 ENFI  287 (349)
Q Consensus       284 ~~~~  287 (349)
                      +.+.
T Consensus       222 ~~i~  225 (257)
T COG5010         222 EDIA  225 (257)
T ss_pred             Hhhc
Confidence            5554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=2.1e-06  Score=66.12  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCc--HHHHH
Q 018924          133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY-CRNGL--LEKAE  209 (349)
Q Consensus       133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~  209 (349)
                      .++.+++...++......+.+...|..+...|...|+++.|...|+...+.. +.+...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            4444555555554444445556666666666666677777776666666643 33455555555543 45555  36777


Q ss_pred             HHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +++++..+.++. +...+..+...+...|++++|+..|+++++
T Consensus       131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            777776665543 555666666666677777777777777665

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=4.8e-06  Score=64.38  Aligned_cols=259  Identities=14%  Similarity=0.102  Sum_probs=143.8

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      -|+...|+  ++-+.-.|++..++..-.......  -+...-.-+-++|...|.+...   ...++ ... .|....+..
T Consensus         7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~-~~~-~~~lqAvr~   77 (299)
T KOG3081|consen    7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIK-EGK-ATPLQAVRL   77 (299)
T ss_pred             CcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---ccccc-ccc-CChHHHHHH
Confidence            34444444  345555677777766655543331  2334444456667777765432   33343 222 344444444


Q ss_pred             HHHHHhhcCcHHHHHH-HHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           90 VGNGYGKVGLLDKALA-MLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        90 li~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      +......-++.++-.. +.+.+.......+. .....-...|+..|++++|++..+.   +  .+......=+..+.+..
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~-i~~l~aa~i~~~~~~~deAl~~~~~---~--~~lE~~Al~VqI~lk~~  151 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVADSTDGSNL-IDLLLAAIIYMHDGDFDEALKALHL---G--ENLEAAALNVQILLKMH  151 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHhhccchhH-HHHHHhhHHhhcCCChHHHHHHHhc---c--chHHHHHHHHHHHHHHH
Confidence            4444444444444333 33444433333332 2333344567777888888777762   1  12222333334455667


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924          169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  244 (349)
                      +.+.|.+.++.|.+..   +..+.+-|..++.+    .+.+.+|+-+|++|.++ ..|+..+.+-...++...|++++|.
T Consensus       152 r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe  227 (299)
T KOG3081|consen  152 RFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE  227 (299)
T ss_pred             HHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence            7777888777777632   33455555555543    45577778888877764 3467777777777777788888888


Q ss_pred             HHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH-HHHHHHHhhC
Q 018924          245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA-ENFIELLNDK  293 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~  293 (349)
                      .+++.++..      -.-++.+...++-+-...|...++ .+.+..++..
T Consensus       228 ~lL~eaL~k------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  228 SLLEEALDK------DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHhc------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            888877763      233566666666666666655443 3444555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.6e-05  Score=61.57  Aligned_cols=247  Identities=13%  Similarity=0.100  Sum_probs=165.0

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      ++-+.-.|++..++..-.... ...-.+....  -+-++|...|.+.....   ++.. +-.++. .+...+......-+
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~-~~~~~~e~d~--y~~raylAlg~~~~~~~---eI~~-~~~~~l-qAvr~~a~~~~~e~   86 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFS-SSKTDVELDV--YMYRAYLALGQYQIVIS---EIKE-GKATPL-QAVRLLAEYLELES   86 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhc-cccchhHHHH--HHHHHHHHccccccccc---cccc-ccCChH-HHHHHHHHHhhCcc
Confidence            445566788888776666554 2211122333  36677777787654443   3322 223333 45544444444444


Q ss_pred             CHHHHH-HHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924          135 KKDDVL-RIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV  212 (349)
Q Consensus       135 ~~~~a~-~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  212 (349)
                      +.+.-+ ++.+ +.......+......-...|+..|++++|++......      +......=+..+.+..+.+-|.+.+
T Consensus        87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l  160 (299)
T KOG3081|consen   87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL  160 (299)
T ss_pred             hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443 3344 4444444444444555667899999999999887621      2233333445567788999999999


Q ss_pred             HHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          213 NHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       213 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      ++|.+-.   +..+.+-|..++.+    .+.+.+|.-+|+++.+      ...|+..+.+....++...|++++|+.+++
T Consensus       161 k~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~  231 (299)
T KOG3081|consen  161 KKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE------KTPPTPLLLNGQAVCHLQLGRYEEAESLLE  231 (299)
T ss_pred             HHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc------ccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence            9999842   55566666666544    5679999999999985      578999999999999999999999999999


Q ss_pred             HHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhC
Q 018924          289 LLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGN  324 (349)
Q Consensus       289 ~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~  324 (349)
                      ....+...++.+...++ +-...|   +-..+.+.++...
T Consensus       232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            99999888888888888 666667   2345666666553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3.8e-06  Score=71.13  Aligned_cols=289  Identities=17%  Similarity=0.145  Sum_probs=191.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH-HHHHHHHHHHhhcCc
Q 018924           21 KLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW-VIYATVGNGYGKVGL   99 (349)
Q Consensus        21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~   99 (349)
                      .+.++.|+++.|+..|-+.+.... +|...|..-..+|+..|++++|.+=-.+-.   .+.|++ ..|+-+..++.-.|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence            456788999999999999988754 388889999999999999999876555544   566775 468888889999999


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC---------------------------------------------
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG---------------------------------------------  134 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------------  134 (349)
                      +++|+..|.+-.+.  .|+....++.+..++....                                             
T Consensus        86 ~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   86 YEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             HHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            99999999987763  4454455555555542110                                             


Q ss_pred             ------CHHHHHHHHHH------HHhh-------ccC---------Ch-------------hhHHHHHHHHhccCCHHHH
Q 018924          135 ------KKDDVLRIWEL------YKKA-------VKV---------LN-------------NGYRNVISSLLKLDDLESA  173 (349)
Q Consensus       135 ------~~~~a~~~~~~------~~~~-------~~~---------~~-------------~~~~~li~~~~~~~~~~~a  173 (349)
                            +...+...+..      ...+       ..|         ..             .-...+.++..+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                  00111111100      0000       001         00             0123455555566667777


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH-------HHHHHhcCCCHHHHHHH
Q 018924          174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY-------LATGYRQNSQIHKAVEA  246 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~  246 (349)
                      .+-+....+..  .++.-++....+|...|.+..+...-....+.|.. ...-|+.       +..+|.+.++++.++.+
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            77777766643  45555677777788888887777776666655432 1222332       33456667889999999


Q ss_pred             HHHHHHHhcccccCCCCHHHHH-------------------------HHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924          247 MKKVLAAYQTLVKWKPSVESLA-------------------------ACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ  301 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~~~~~~-------------------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  301 (349)
                      |.+.+..     ...|+..+=.                         .-...+.+.|++..|...+.++....|.+...|
T Consensus       321 ~~kaLte-----~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY  395 (539)
T KOG0548|consen  321 YQKALTE-----HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY  395 (539)
T ss_pred             HHHHhhh-----hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence            9998876     4444432211                         112356788999999999999999999999999


Q ss_pred             HHHh-hhhhcC--cchHHHHHHHHh
Q 018924          302 DKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       302 ~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      .... +|.+.|  ..|+.-.+...+
T Consensus       396 sNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  396 SNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9998 998888  566665555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.78  E-value=1.8e-06  Score=66.52  Aligned_cols=154  Identities=15%  Similarity=0.027  Sum_probs=115.9

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  206 (349)
                      +-.|...|+++.+....+...   .|. .       .+...++.+++...++...+.+ +.|...|..+...|...|+++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~---~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA---DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh---Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence            346778888877644433111   111 0       1223667778888888877765 667888999999999999999


Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHH-hcCCC--HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGY-RQNSQ--IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG  282 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~  282 (349)
                      +|...|++..+..+. +...+..+..++ ...|+  .++|.+++++.++.       .| +...+..+...+.+.|++++
T Consensus        91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370         91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------DANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------CCCChhHHHHHHHHHHHcCCHHH
Confidence            999999999987654 677777777764 67677  59999999999954       56 56778888888999999999


Q ss_pred             HHHHHHHHhhCCCCCchh
Q 018924          283 AENFIELLNDKGFIPTDL  300 (349)
Q Consensus       283 a~~~~~~~~~~~~~~~~~  300 (349)
                      |...|+.+.+..+|+..-
T Consensus       163 Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        163 AIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHhhCCCCccH
Confidence            999999999887766543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=3.1e-06  Score=66.57  Aligned_cols=260  Identities=11%  Similarity=0.040  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH-HH
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN-VI  126 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l  126 (349)
                      ..-+.+++..+.+..+++.|++++.... +... .+....+.|..+|....++..|-..++++-..  .|.. .-|. --
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~-Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~-~qYrlY~   84 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSEL-ERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL-EQYRLYQ   84 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHH-hcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH-HHHHHHH
Confidence            3446677777788899999999998776 4333 47788889999999999999999999999774  3333 2222 23


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS--LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL  204 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  204 (349)
                      ...+.+.+.+.+|+.+..++...  |....-..-+.+  ....+++..+..++++.-..   .+..+.+.......+.|+
T Consensus        85 AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ  159 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecccc
Confidence            45677889999999999854433  322222222222  23567888888888776432   244455556666778999


Q ss_pred             HHHHHHHHHHHHH-cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC-------------CCHH-----
Q 018924          205 LEKAENLVNHEKL-KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK-------------PSVE-----  265 (349)
Q Consensus       205 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------p~~~-----  265 (349)
                      ++.|.+-|+...+ .|.. ....||..+. ..+.++++.|+++..++++.     |++             ||..     
T Consensus       160 yEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieR-----G~r~HPElgIGm~tegiDvrsvgNt  232 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIER-----GIRQHPELGIGMTTEGIDVRSVGNT  232 (459)
T ss_pred             HHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-----hhhcCCccCccceeccCchhcccch
Confidence            9999999998876 4555 3556765554 45678999999999999987     332             2221     


Q ss_pred             ---HHHHHHHH-------HHhcCChhhHHHHHHHHhhCCC--CCchhHHHHh-hhhhcC-cchHHHHHHHHhC
Q 018924          266 ---SLAACLDY-------FKDEGDIGGAENFIELLNDKGF--IPTDLQDKLL-DNVQNG-KSNLETLRELYGN  324 (349)
Q Consensus       266 ---~~~~ll~~-------~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~~~g-~~a~~~~~~m~~~  324 (349)
                         .-+.++.+       +.+.|+++.|.+.+..|.-...  .++.+...+. .-.... .+...-+.-+.+.
T Consensus       233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~  305 (459)
T KOG4340|consen  233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ  305 (459)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc
Confidence               12333333       4688999999999988876532  5666666665 444443 3334444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=2e-05  Score=67.68  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILT   72 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   72 (349)
                      ++-+...|++++|.....+++..+ +-|...+..-+-+.++.+++++|+.+.+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik   70 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK   70 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence            355667778888888888877765 2244455555556667777777765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.75  E-value=1.4e-05  Score=73.97  Aligned_cols=31  Identities=6%  Similarity=0.114  Sum_probs=18.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN   42 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~   42 (349)
                      +...|..|+..+...+++++|.++.+...+.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~   60 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE   60 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            4555666666666666666666666654443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=9.2e-06  Score=74.08  Aligned_cols=132  Identities=11%  Similarity=0.053  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV  125 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  125 (349)
                      +...+..|..+..+.|.+++|..+++... .  +.|+ ......+...+.+.+++++|+..+++..+.  .|+.......
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~-~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIH-Q--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHH-h--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            45555555555666666666666666655 2  2232 333445555666666666666666666553  3344345555


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924          126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  183 (349)
                      +..++...|++++|..+|+......+.+..++..+..++...|+.++|...|+...+.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5666666666666666666322233333455555556666666666666666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1.3e-05  Score=64.65  Aligned_cols=210  Identities=12%  Similarity=0.035  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhhH-------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHH
Q 018924          123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVL-NNGY-------RNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPN  193 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~  193 (349)
                      ...|+--|.+.++..+|..+.+    .+.|. +.-|       ..+.+-.....+..-|.+.|+..-+.+..-|+ .--.
T Consensus       288 RlNL~iYyL~q~dVqeA~~L~K----dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ  363 (557)
T KOG3785|consen  288 RLNLIIYYLNQNDVQEAISLCK----DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ  363 (557)
T ss_pred             hhhheeeecccccHHHHHHHHh----hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence            3445556677778777777766    11222 2112       12222222223455666666655554443332 2234


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH-HHH
Q 018924          194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA-CLD  272 (349)
Q Consensus       194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~-ll~  272 (349)
                      ++...+.-..+++++...++.+..-=...|...+ .+..+++..|++.+|+++|-.+...     .++ |..+|.+ |.+
T Consensus       364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-----~ik-n~~~Y~s~LAr  436 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-----EIK-NKILYKSMLAR  436 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-----hhh-hhHHHHHHHHH
Confidence            5556666667788888888777764333333333 4778889999999999999887632     333 4555554 456


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHHh
Q 018924          273 YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEK  347 (349)
Q Consensus       273 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~  347 (349)
                      +|.+.++.+.|..++-.+..  +.+..+.-.+|  .+.+.+  --|-+.|+.+..  ..|++.-|.+.-|....++..+
T Consensus       437 Cyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG~f~~l  511 (557)
T KOG3785|consen  437 CYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAGLFRQL  511 (557)
T ss_pred             HHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHHHHHHH
Confidence            78889999988877654432  23333444455  455555  556666776654  4788888888888777766554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.72  E-value=0.00014  Score=63.37  Aligned_cols=301  Identities=12%  Similarity=0.094  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEEN-GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      .|-.-+..+.++|++......|+..+.. -+.....+|...+.-....+-++-+..++++-. +  +.|.  .-+-.|..
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-k--~~P~--~~eeyie~  178 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-K--VAPE--AREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-h--cCHH--HHHHHHHH
Confidence            4555556666777888888888777654 222334577777777777788888899998877 3  3333  35667888


Q ss_pred             HhhcCcHHHHHHHHHHHHHhh-----cCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh--hhHHHHHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQI-----KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLN--NGYRNVISSL  164 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~  164 (349)
                      +++.+++++|.+.+.......     ..++....|+.+.....++.+.-..+.+=.....|+.  +|.  ..|++|...|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            999999999999888875421     1123325787777777766554433333222223332  443  5789999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc----------------------HHHHHHHHHHHHHcCc--
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL----------------------LEKAENLVNHEKLKGR--  220 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~--  220 (349)
                      .+.|+++.|..+|++....  ..+..-|+.+.++|..-..                      ++-....|+.+...++  
T Consensus       259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~  336 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL  336 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence            9999999999999998764  2334445555555543221                      2223333333332211  


Q ss_pred             ---------ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHhcCChhhHHH
Q 018924          221 ---------EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKDEGDIGGAEN  285 (349)
Q Consensus       221 ---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~a~~  285 (349)
                               .-++..|..-+.  +..|+..+-...|.+++.      .+.|.      ...|..+.+.|...|+++.|+.
T Consensus       337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~------~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv  408 (835)
T KOG2047|consen  337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK------TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV  408 (835)
T ss_pred             HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH------ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence                     012333433333  235678888889999887      45553      3568888889999999999999


Q ss_pred             HHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHhCCCCCCc
Q 018924          286 FIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYGNSLAGNE  330 (349)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~~~~~p~~  330 (349)
                      +|+.......+...-...+. .++...   +.....++-|.+.-..|..
T Consensus       409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~  457 (835)
T KOG2047|consen  409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN  457 (835)
T ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence            99999887666654444444 444333   3333333344444445555

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.71  E-value=1.5e-05  Score=72.66  Aligned_cols=131  Identities=15%  Similarity=0.019  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      ...+-.|.....+.|..++|+.+++...+  ..|+...++..++..+.+.+++++|+..++......+-+......+..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            44444445555555555555555555544  2344434444455555555555555555543333333333344444444


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      +.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555555555554421 22234444444445555555555555554443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.70  E-value=5.9e-05  Score=72.81  Aligned_cols=275  Identities=10%  Similarity=-0.018  Sum_probs=176.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHHHHH
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIYATV   90 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l   90 (349)
                      +...+...|++++|...+++....-...+.    ...+.+...+...|++++|...+++...   ..+. .....++..+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            334566899999999999998763211121    2445566667789999999998887651   1121 1122344567


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcC---Cc---chhhHHHHHHHHhhcCCHHHHHHHHHHH-H--hhccCC--hhhHHH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKG---AK---VNSAYNVILTLYGKYGKKDDVLRIWELY-K--KAVKVL--NNGYRN  159 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~--~~~~~~--~~~~~~  159 (349)
                      ...+...|++++|...+++.......   +.   ....+..+...+...|++++|...++.. .  ....+.  ...+..
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            77888999999999999887653111   11   1123455666778889999999988821 1  111121  234455


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCC-cchH-----HHHHHHHHhcCcHHHHHHHHHHHHHcCcccc---hhhHHHH
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYD-TRIP-----NFLIDVYCRNGLLEKAENLVNHEKLKGREIH---VKSWYYL  230 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  230 (349)
                      +...+...|+++.|...++.......... ...+     ...+..+...|+.+.|..++...........   ...+..+
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  697 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI  697 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence            66777889999999999988764211111 1111     1122445568899999999877554221111   1113456


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924          231 ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       231 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  294 (349)
                      ..++...|++++|...+.++.... ...+..+ ...+...+..++.+.|+.++|...+.+.....
T Consensus       698 a~~~~~~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        698 ARAQILLGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            677888999999999999987641 1112222 23456666677889999999999999887764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=4.7e-06  Score=67.13  Aligned_cols=148  Identities=14%  Similarity=0.064  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924          101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW  180 (349)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  180 (349)
                      .-|.+.|+-.-+++.+.++..-..++.+.+.-..++++++-.++....-+..|...--.+.++++..|++.+|+++|-.+
T Consensus       340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence            33444444443333333332334445555555555555555555222222222222233455555555555555555444


Q ss_pred             HhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          181 ESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      ....++.+..-...|.++|.++++++.|+.++-.+...   .+..+ ...+..-|.+.+.+--|.+.|+.+.
T Consensus       420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            33222222222234445555555555555544333221   11111 2222334555555555555555554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=0.00016  Score=62.39  Aligned_cols=150  Identities=10%  Similarity=0.021  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH--------HHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN--------HEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      +..+.+++...-+....-...+.-.++......|+++.|.+++.        .+.+.+..|  .+...+...+.+.++-+
T Consensus       357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~  434 (652)
T KOG2376|consen  357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDND  434 (652)
T ss_pred             HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCc
Confidence            44455555444433211122344445566677889999988888        555544443  34455666677777777


Q ss_pred             HHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHH
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETL  318 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~  318 (349)
                      .|..++.+++..+.......+.. .++.-+...-.+.|+.++|..+++++.+..+++..+...++ +|++-. +.|..+-
T Consensus       435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~  514 (652)
T KOG2376|consen  435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS  514 (652)
T ss_pred             cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence            77777777776532221212211 12222222335679999999999999998899999999999 999988 7777765


Q ss_pred             HHH
Q 018924          319 REL  321 (349)
Q Consensus       319 ~~m  321 (349)
                      +.+
T Consensus       515 k~L  517 (652)
T KOG2376|consen  515 KKL  517 (652)
T ss_pred             hcC
Confidence            544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.68  E-value=5.3e-05  Score=67.20  Aligned_cols=255  Identities=15%  Similarity=0.017  Sum_probs=165.7

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 018924           30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKK  109 (349)
Q Consensus        30 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  109 (349)
                      .++++.+++..+.+.. |+.....+.--|+..++++.|.+..++.. +.+...+...|..|.-.+...+++.+|+.+.+.
T Consensus       461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL-~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREAL-ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            4566777777665432 33322233334667778888888887777 555556777777777777788888888877766


Q ss_pred             HHHhhcC---------------Ccch---hhHHHHHHHHh-----------------------hcCCHHHHHHHHH----
Q 018924          110 SEEQIKG---------------AKVN---SAYNVILTLYG-----------------------KYGKKDDVLRIWE----  144 (349)
Q Consensus       110 ~~~~~~~---------------~~~~---~~~~~l~~~~~-----------------------~~~~~~~a~~~~~----  144 (349)
                      ....-..               .+..   .+...++...-                       ..++..++.+..+    
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            6543111               0000   01111111110                       0011111111111    


Q ss_pred             -----HHHhh---------ccCCh--------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          145 -----LYKKA---------VKVLN--------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       145 -----~~~~~---------~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                           ....+         ..|+.        ..|......+.+.++.++|...+.+..+.. +.....|......+...
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~  697 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK  697 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence                 00000         00111        124456667778888888988888877653 45566777777888889


Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH--HHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCC
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE--AMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGD  279 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~  279 (349)
                      |..++|.+.|......++. ++.+..++...+.+.|+..-|..  ++..+++       +.| +...|..+...+-+.|+
T Consensus       698 ~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR-------LDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             HhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccc
Confidence            9999999999998886543 56788899999999998887877  9999984       466 78899999999999999


Q ss_pred             hhhHHHHHHHHhhCCC
Q 018924          280 IGGAENFIELLNDKGF  295 (349)
Q Consensus       280 ~~~a~~~~~~~~~~~~  295 (349)
                      .+.|-+.|........
T Consensus       770 ~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  770 SKQAAECFQAALQLEE  785 (799)
T ss_pred             hHHHHHHHHHHHhhcc
Confidence            9999999998877644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.68  E-value=3.8e-06  Score=61.19  Aligned_cols=88  Identities=7%  Similarity=-0.053  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .+..++...|++++|...|+... ..+. .+...|..+..++...|++++|...|++....  .|+...++..+..++..
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLV-MAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence            34444455555555555555554 3222 34444555555555555555555555555542  23332455555555555


Q ss_pred             cCCHHHHHHHHH
Q 018924          133 YGKKDDVLRIWE  144 (349)
Q Consensus       133 ~~~~~~a~~~~~  144 (349)
                      .|++++|+..|+
T Consensus       105 ~g~~~eAi~~~~  116 (144)
T PRK15359        105 MGEPGLAREAFQ  116 (144)
T ss_pred             cCCHHHHHHHHH
Confidence            555555555555

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.68  E-value=1.8e-06  Score=62.86  Aligned_cols=113  Identities=4%  Similarity=-0.136  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      ++..+..+...+.+.|++++|...|+....... .+...|..+..++.+.|++++|...|++.. ..+. .+...+..+.
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l~p-~~~~a~~~lg   99 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHAL-MLDA-SHPEPVYQTG   99 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCC-CCcHHHHHHH
Confidence            344466678889999999999999999998753 377799999999999999999999999998 6454 6778888999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL  129 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (349)
                      .++...|+.++|...|+...+.  .|+.+..|.....+
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~  135 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence            9999999999999999999874  45553455444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=0.00013  Score=70.50  Aligned_cols=302  Identities=13%  Similarity=0.035  Sum_probs=185.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc----HH
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENG--I----TYDR--YTYCTRLSAYADASDHEGIDKILTMMEADPNVALD----WV   85 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~--~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~   85 (349)
                      .....+...|+++++...+......-  .    .|..  .....+...+...|++++|...+++.. ......+    ..
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~  492 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELAL-AELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCccHHHHHH
Confidence            34445567899999999988875431  1    1111  122223345567899999999998876 3111112    23


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHHH-HH----hhcc--C-C
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWEL-YK----KAVK--V-L  153 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~----~~~~--~-~  153 (349)
                      ..+.+...+...|++++|...+++........    ....++..+...+...|+++.|...++. ..    .+..  + .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            44566777888999999999998886532211    1113455667778889999999998872 11    1111  1 1


Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhH-
Q 018924          154 NNGYRNVISSLLKLDDLESAEKIFEEWESQA--LCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSW-  227 (349)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-  227 (349)
                      ...+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|+++.|...+.......... ....+ 
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            2234455666778899999999988876421  111  12334446667788999999999988875421110 11111 


Q ss_pred             ----HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC
Q 018924          228 ----YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKDEGDIGGAENFIELLNDK----GFI  296 (349)
Q Consensus       228 ----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~  296 (349)
                          ...+..+...|+.+.|.+++......     .....   ...+..+..++...|+.++|...++.+...    +.+
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~  727 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-----EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM  727 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-----CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch
Confidence                11224445588999999887775421     11111   112345666788999999999999887653    222


Q ss_pred             C--chhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          297 P--TDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       297 ~--~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      .  ..+...+. ++.+.|  ++|...+.+..+..
T Consensus       728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            1  12344444 777888  78888888876653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=0.00016  Score=61.07  Aligned_cols=147  Identities=15%  Similarity=0.065  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD-TRIPNFLIDVYC  200 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~  200 (349)
                      .+--....+...|++++|+..++......+-|..........+.+.++.++|.+.++.+...  .|+ ....-.+..+|.
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all  385 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL  385 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence            44444555566777777777777433444444455555667777777777777777777764  343 445556777777


Q ss_pred             hcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924          201 RNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI  280 (349)
Q Consensus       201 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~  280 (349)
                      +.|++.+|..++++.....+. |+..|..|..+|...|+..++.....+                       .+...|++
T Consensus       386 ~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------------~~~~~G~~  441 (484)
T COG4783         386 KGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-----------------------GYALAGRL  441 (484)
T ss_pred             hcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-----------------------HHHhCCCH
Confidence            777777777777777765543 677777777777777776666544333                       34456777


Q ss_pred             hhHHHHHHHHhhCC
Q 018924          281 GGAENFIELLNDKG  294 (349)
Q Consensus       281 ~~a~~~~~~~~~~~  294 (349)
                      +.|...+....+..
T Consensus       442 ~~A~~~l~~A~~~~  455 (484)
T COG4783         442 EQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777776666653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=2.9e-05  Score=70.95  Aligned_cols=210  Identities=16%  Similarity=0.177  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISS  163 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~  163 (349)
                      ..|..+..+-.+.|.+.+|++-|-+.      .++ ..|...+....+.|.|++-.+++.|.....+ |..  =+.+|-+
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDp-s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDP-SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCc-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence            45666777777777777666655432      122 5677777777777777777777775444433 333  2466667


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      |++.++..+.++++       ..||......+.+-|...|.++.|.-+|.         ++.-|..|...+...|.+..|
T Consensus      1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence            77777666555444       24555555555555555555555555553         233344555555555555555


Q ss_pred             HHHHHHHHHH-------------------hcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924          244 VEAMKKVLAA-------------------YQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL  304 (349)
Q Consensus       244 ~~~~~~~~~~-------------------~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  304 (349)
                      .+.-+++-..                   ......+-....-..-++..|-..|-+++...+++.........-..|.-+
T Consensus      1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred             HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence            4443332211                   000002222344456666677777777777777665554433444456667


Q ss_pred             h-hhhhcC-cchHHHHH
Q 018924          305 L-DNVQNG-KSNLETLR  319 (349)
Q Consensus       305 ~-~~~~~g-~~a~~~~~  319 (349)
                      . .|.+-. ++.++.++
T Consensus      1320 aiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1320 AILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred             HHHHHhcCHHHHHHHHH
Confidence            6 777766 54444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=5.5e-05  Score=63.76  Aligned_cols=110  Identities=16%  Similarity=0.063  Sum_probs=49.1

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924           60 DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV  139 (349)
Q Consensus        60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  139 (349)
                      ..|+++.|+..++.+. . ..+-|..-+......+.+.++..+|.+.++.+...  .|+....+-.+..++.+.|++.+|
T Consensus       318 ~~~~~d~A~~~l~~L~-~-~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         318 LAGQYDEALKLLQPLI-A-AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HhcccchHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            4444555555555444 1 11122222233344455555555555555554442  233223444444555555555555


Q ss_pred             HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924          140 LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  173 (349)
                      +.+++......+.|+..|..+.++|...|+..++
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            5555433344444444455555555555544443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=9.9e-05  Score=56.95  Aligned_cols=159  Identities=14%  Similarity=0.057  Sum_probs=70.6

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      .++-+....|+.+.|...++++...-  |.+..+-..-...+-..|.+++|+++++......+.|..++---+...-..|
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G  134 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG  134 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence            34444444555555555555554432  2221222222222333455555555555333333444444444444444444


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC---CHHHHHH
Q 018924          169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVE  245 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~  245 (349)
                      +.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. ++..+..+...+...|   +.+.+.+
T Consensus       135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444444444444433 3445555555555555555555555555555543221 2333333333332222   3444555


Q ss_pred             HHHHHH
Q 018924          246 AMKKVL  251 (349)
Q Consensus       246 ~~~~~~  251 (349)
                      +|.+.+
T Consensus       213 yy~~al  218 (289)
T KOG3060|consen  213 YYERAL  218 (289)
T ss_pred             HHHHHH
Confidence            555555

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.56  E-value=1.4e-07  Score=50.15  Aligned_cols=34  Identities=35%  Similarity=0.493  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR   48 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~   48 (349)
                      +||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999999999873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.55  E-value=1.5e-07  Score=49.63  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITY   46 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p   46 (349)
                      .+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578899999999999999999999998888877

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=0.00015  Score=55.92  Aligned_cols=190  Identities=15%  Similarity=0.078  Sum_probs=142.6

Q ss_pred             cCChhHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924           26 TGNFEKLDSLMHEMEEN---G-ITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL  100 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~---~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  100 (349)
                      ..+.++.++++.+++..   | ..|+.. .|..++-+....|+.+.|..+++++..+.  +-+..+-..-.-.+-..|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            46788999999988753   4 555655 56667777788999999999999987332  23333322223335567999


Q ss_pred             HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924          101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW  180 (349)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  180 (349)
                      ++|+++++.+.+..  |+...++---+...-..|+.-+|++-+......+..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999999864  4443677777777777888889998888777888999999999999999999999999999999


Q ss_pred             HhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcCc
Q 018924          181 ESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKGR  220 (349)
Q Consensus       181 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~  220 (349)
                      .-.. |.+...+..+...+.-.|   +++.|.+.|.+..+...
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            8753 445555556666655444   56788999998888543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.52  E-value=6.3e-06  Score=59.55  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=36.3

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      ..+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+...+...|+++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~  102 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGEPE  102 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCCHH
Confidence            33344444444444444443332 223333444444444444444444444444333211 2333333444444444444


Q ss_pred             HHHHHHHHHH
Q 018924          242 KAVEAMKKVL  251 (349)
Q Consensus       242 ~a~~~~~~~~  251 (349)
                      +|...|+...
T Consensus       103 ~A~~~~~~al  112 (135)
T TIGR02552       103 SALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHH
Confidence            4444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.49  E-value=1.4e-05  Score=57.71  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      ...+...+...|++++|.+.|+.....+  |+....|..+...+...|++++|...++......+.+...+..+...+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            3344445555555555555555554432  22224455555555555555555555553222233333444444445555


Q ss_pred             cCCHHHHHHHHHHHHh
Q 018924          167 LDDLESAEKIFEEWES  182 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~  182 (349)
                      .|+++.|...++...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.47  E-value=0.00042  Score=56.04  Aligned_cols=296  Identities=15%  Similarity=0.063  Sum_probs=197.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHH----------H
Q 018924           21 KLYYKTGNFEKLDSLMHEMEENGITYDRYT-YCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVI----------Y   87 (349)
Q Consensus        21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~----------~   87 (349)
                      ..|...|+..-|+.=+...++.  +||-.. -..-...+.+.|.+++|..-|+... ......  ...+          +
T Consensus        80 T~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl-~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen   80 TVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVL-QHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             HHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHH-hcCCCcchhHHHHHHHHhHHHHH
Confidence            4677778888888888887764  666432 2223446778999999999999987 433211  1111          1


Q ss_pred             --HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924           88 --ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL  165 (349)
Q Consensus        88 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  165 (349)
                        ...+..+.-.|+...|+.....+.+.. .-+. ..|..-..+|...|++..|+.=++....-...+..++.-+-..+.
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY  234 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              233455667889999999999998742 2344 678888899999999999988777444444455566777777888


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchH----HHH---H------HHHHhcCcHHHHHHHHHHHHHcCcccchh---hHHH
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIP----NFL---I------DVYCRNGLLEKAENLVNHEKLKGREIHVK---SWYY  229 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~  229 (349)
                      ..|+.+.++..+++-++.  .||...+    ..|   .      ......+++-++.+-.+...+..+.....   .+..
T Consensus       235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~  312 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV  312 (504)
T ss_pred             hhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence            999999999999988874  4554322    111   1      11234566777777777777655432222   3445


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch---------
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD---------  299 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------  299 (349)
                      +-.++...+++.+|++...+++       .+.|+ ..++.--..+|.-..+++.|..-|+...+.+..+..         
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL-------~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak  385 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVL-------DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK  385 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHH-------hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            5667778899999999999998       55775 777777777888788888888888777766543322         


Q ss_pred             ---------hHHHHhhhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924          300 ---------LQDKLLDNVQNG--KSNLETLRELYGNSLAGNEE  331 (349)
Q Consensus       300 ---------~~~~l~~~~~~g--~~a~~~~~~m~~~~~~p~~~  331 (349)
                               -|..+++.-++.  .+..+.|++|.++ ..||..
T Consensus       386 rlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk-WHPDNF  427 (504)
T KOG0624|consen  386 RLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQK-WHPDNF  427 (504)
T ss_pred             HHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHh-cCCccc
Confidence                     233333222222  6777778887664 566654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.47  E-value=0.00066  Score=58.24  Aligned_cols=64  Identities=6%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      +-|+.+|+.||+-+-.. .++++.+.++++... ++-....|..-+..-.+..+++...++|.+..
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34899999999977655 999999999999864 33355688888888888888888888887754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5.6e-05  Score=67.72  Aligned_cols=211  Identities=14%  Similarity=0.168  Sum_probs=133.3

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-GI--------TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL   82 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~   82 (349)
                      +...|..+.+.|.+..+.+-|.-.+..|... |.        .|+ .+=..+.-.....|.+++|..+|++-+ +.    
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R~----  829 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-RY----  829 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-HH----
Confidence            5677888888888888888887777776532 11        121 222223333456788888888888877 42    


Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHH-----------HHhh--
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL-----------YKKA--  149 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----------~~~~--  149 (349)
                           ..|=..|-..|.+++|.++-+.--.  +...  .+|.....-+-..+|.+.|++.|+.           ....  
T Consensus       830 -----DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr--~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~  900 (1416)
T KOG3617|consen  830 -----DLLNKLYQSQGMWSEAFEIAETKDR--IHLR--NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK  900 (1416)
T ss_pred             -----HHHHHHHHhcccHHHHHHHHhhccc--eehh--hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence                 2355667778888888887654221  2222  3666666777777788888777751           1110  


Q ss_pred             -------ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          150 -------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       150 -------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                             -..|...|.-.....-..|+.+.|+.+|.....         |-++++..|-.|+.++|-++-++-.      
T Consensus       901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------  965 (1416)
T KOG3617|consen  901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------  965 (1416)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------
Confidence                   012334455555555667777777777765543         4456666677777777777654322      


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      |....-.+...|-..|++.+|..+|.++..
T Consensus       966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  966 DKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            444555677888888888888888877653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.0014  Score=60.63  Aligned_cols=240  Identities=13%  Similarity=0.075  Sum_probs=154.2

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENG--ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      |+..-...+.++...+-+.+-+++++++.-.+  +.-+...-|.|+-...+ -+..+..+..+++. ..+. |+.     
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLd-nyDa-~~i----- 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLD-NYDA-PDI----- 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhc-cCCc-hhH-----
Confidence            55556677888888888899999998886542  12222333444443333 34455666666666 4443 332     


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHh--------------------hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQ--------------------IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA  149 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  149 (349)
                       .......+-+++|..+|++....                    ....+.+.+|+.+..+-.+.|...+|++-|-.    
T Consensus      1055 -a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik---- 1129 (1666)
T KOG0985|consen 1055 -AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK---- 1129 (1666)
T ss_pred             -HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh----
Confidence             23334444455555555442100                    00122225788888888888888888876641    


Q ss_pred             ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH
Q 018924          150 VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY  229 (349)
Q Consensus       150 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  229 (349)
                       ..|+..|..+++.+.+.|.+++-.+++...++..-.|.+  -+.|+-+|++.+++.+.++++       ..||......
T Consensus      1130 -adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1130 -ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred             -cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence             145667899999999999999999988887776555554  456888999999887766654       2377777778


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      +..-|...|.++.|.-+|.....              |..|...+...|+++.|...-+
T Consensus      1200 vGdrcf~~~~y~aAkl~y~~vSN--------------~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSN--------------FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HhHHHhhhhhhHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888888888777766532              3445555555566655554433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.40  E-value=2.1e-05  Score=66.56  Aligned_cols=124  Identities=16%  Similarity=0.128  Sum_probs=100.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      ...++..+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++++..+..+. +...+..-...|.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            4456667777889999999999998764  44  4556888888888999999999988876543 56667777778889


Q ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          237 NSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .++++.|+.+.+++.       ...|+. .+|..|..+|...|+++.|...++.+.-
T Consensus       247 k~~~~lAL~iAk~av-------~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAV-------ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHH-------HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            999999999999998       447854 5999999999999999999999887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.36  E-value=3.4e-05  Score=65.27  Aligned_cols=121  Identities=12%  Similarity=0.072  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .|+..+...++++.|..+++++. +..  |+..  ..++..+...++-.+|.+++++....  .|............+..
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~-~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLR-ERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHH-hcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence            34444444555555555555555 222  3322  23445555555555555555555543  12222344444455555


Q ss_pred             cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924          133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW  180 (349)
Q Consensus       133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  180 (349)
                      .++++.|+.+.+....-.|-+-.+|..|..+|...|+++.|+-.++.+
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            555555555555322222333345555555555555555555555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.35  E-value=9.8e-07  Score=46.78  Aligned_cols=31  Identities=35%  Similarity=0.427  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                      ||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            3333333333333333333333333333333

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=9.3e-05  Score=66.40  Aligned_cols=241  Identities=16%  Similarity=0.177  Sum_probs=158.0

Q ss_pred             cHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC--------C
Q 018924           12 TTVVYNSMLK--LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV--------A   81 (349)
Q Consensus        12 ~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~   81 (349)
                      |..|=.++++  .|..-|+.+.|.+-.+.++      +...|..+.+.|.+.++++-|.-.+..|....|.        .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            3444444444  3556788888888777665      4578999999999999888887776666532221        1


Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI  161 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  161 (349)
                      |+ .+-......-...|.+++|+.+|++-+.          |..|=..|...|.|++|.++-+.. ..+. -..||....
T Consensus       799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~-DRiH-Lr~Tyy~yA  865 (1416)
T KOG3617|consen  799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETK-DRIH-LRNTYYNYA  865 (1416)
T ss_pred             Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhc-ccee-hhhhHHHHH
Confidence            21 1212233445678999999999988653          444556677889999999988721 1111 124666666


Q ss_pred             HHHhccCCHHHHHHHHHHHHh----------cC---------CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          162 SSLLKLDDLESAEKIFEEWES----------QA---------LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                      ..+-..++.+.|++.|++...          ..         -..|...|......+-..|+.+.|..+|....+     
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----  940 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----  940 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence            767777888888887775321          10         022444555555555666777777777765543     


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                          |-+++...|-.|+.++|-++-++-           -|......|.+.|-..|++.+|..+|.++.
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~es-----------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEES-----------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHhc-----------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                455666777788888887776653           255566677888888888888888876654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.32  E-value=5e-05  Score=55.48  Aligned_cols=20  Identities=15%  Similarity=0.051  Sum_probs=9.2

Q ss_pred             HHHHhcCChHHHHHHHHHhh
Q 018924           56 SAYADASDHEGIDKILTMME   75 (349)
Q Consensus        56 ~~~~~~~~~~~a~~~~~~~~   75 (349)
                      ..+...|++++|...|+...
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~   75 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKAL   75 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            33444444444444444444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.31  E-value=0.00014  Score=64.63  Aligned_cols=164  Identities=16%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             HhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924          130 YGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       130 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  208 (349)
                      ......|.+|+.+++ ....+.  -..-|..+...|...|+++.|+++|-+.         ..++--|.+|.+.|+++.|
T Consensus       742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence            334455555555555 222211  1122555566666666666666666432         1344456666666666666


Q ss_pred             HHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          209 ENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      .++-.+..  |+......|-.-..-+-.+|++.+|.++|-.+-         .|+     ..|+.|-+.|..+...++..
T Consensus       811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---------~p~-----~aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---------EPD-----KAIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---------Cch-----HHHHHHHhhCcchHHHHHHH
Confidence            66654443  233334445444555566666666666654431         233     23456666666666666554


Q ss_pred             HHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          289 LLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       289 ~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      +-...  .-..+...+. -|-..|  +.|.+.|-+..
T Consensus       875 k~h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  875 KHHGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             HhChh--hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence            33221  1223445555 666666  66766665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=7.4e-05  Score=54.59  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch--hhHHHHH
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV--KSWYYLA  231 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li  231 (349)
                      |..++..+ ..++...+...++.+.+.. +.+.   ...-.+...+...|++++|...|+.+......|+.  .....+.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            44444444 3566666666666666542 1111   11222445566667777777777766665422221  2333455


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  289 (349)
                      ..+...|++++|+..++....       -......+......+.+.|+.++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~-------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPD-------EAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccC-------cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666667777777777655321       122334455555666777777777766654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.29  E-value=0.00017  Score=66.97  Aligned_cols=230  Identities=13%  Similarity=0.085  Sum_probs=158.2

Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-------
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-------  154 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------  154 (349)
                      .+...+..|+..+...+++++|.++.++..+.  .|+....|-.+...+...++..++..+ . .....+.+.       
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-~-~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-N-LIDSFSQNLKWAIVEH  104 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-h-hhhhcccccchhHHHH
Confidence            35667789999999999999999999987774  455545677777788888888888766 4 222233333       


Q ss_pred             ------------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          155 ------------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       155 ------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                                  ..+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|.+...|... ++++|.+++.+....    
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----  178 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----  178 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence                        456667778888899999999999998876 66788888899888888 999999988877763    


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--------------ccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ--------------TLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                                 |...+++..+.++|.++....+              ...+..--..++.-+-..|....+++++..+++
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                       3333444444444444443200              001222234455556677888899999999999


Q ss_pred             HHhhCCCCCchhHHHHh-hhhhcCcchHHHHHHH-HhCCCCCCcccc
Q 018924          289 LLNDKGFIPTDLQDKLL-DNVQNGKSNLETLREL-YGNSLAGNEETL  333 (349)
Q Consensus       289 ~~~~~~~~~~~~~~~l~-~~~~~g~~a~~~~~~m-~~~~~~p~~~t~  333 (349)
                      .+.+..+.+.....-++ +|...=.. ...|++. +-.|+.-+..++
T Consensus       248 ~iL~~~~~n~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~l~~~~~~~  293 (906)
T PRK14720        248 KILEHDNKNNKAREELIRFYKEKYKD-HSLLEDYLKMSDIGNNRKPV  293 (906)
T ss_pred             HHHhcCCcchhhHHHHHHHHHHHccC-cchHHHHHHHhccccCCccH
Confidence            99999888888888888 77632222 4444443 223454443443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.29  E-value=5.1e-05  Score=53.29  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=44.7

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----HHH
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----VES  266 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~  266 (349)
                      ..+...+.+.|++++|...|..+......  .....+..+...+.+.|++++|.+.|+.+...       .|+    ...
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~   78 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-------YPKSPKAPDA   78 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------CCCCCcccHH
Confidence            33444444555555555555555443211  00123334445555555555555555555432       121    233


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      +..+..++.+.|+.++|...++.+....|.+
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            4444444555555555555555555544433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.28  E-value=5.4e-05  Score=64.45  Aligned_cols=115  Identities=15%  Similarity=0.087  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN  159 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~  159 (349)
                      +......+++.+....+++.+..++.+....  ...... .+.+++++.|.+.|..+.++.+++ ....|+-||..+++.
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~-~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLP-STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccC-ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            3444444555555555555555555554432  111111 233455555555555555555555 455555555555555


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV  198 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  198 (349)
                      ++..+.+.|++..|.++...|...+...+..|+..-+.+
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~  182 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS  182 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            555555555555555555555444433444444333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.27  E-value=0.00018  Score=65.87  Aligned_cols=164  Identities=12%  Similarity=0.073  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      ..|..|...|....+...|...|...-+.+.. |...+......|++..+++.|..+.-..-++.....-..-|....-.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            45666666676666777777777776665322 45566677777777777777776632222010000011112223344


Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-hhHHHHHHHHhccCCHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKLDDLES  172 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~  172 (349)
                      |.+.++..+|+.-|+.....  .|.....|..++.+|.++|++..|.++|... ..+.|+. ..---..-.-+..|.+.+
T Consensus       572 yLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA-s~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKA-SLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhh-HhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            55666666666666666553  3333367777777777777777777777622 2223332 111112223345566666


Q ss_pred             HHHHHHHHH
Q 018924          173 AEKIFEEWE  181 (349)
Q Consensus       173 a~~~~~~~~  181 (349)
                      |...+....
T Consensus       649 ald~l~~ii  657 (1238)
T KOG1127|consen  649 ALDALGLII  657 (1238)
T ss_pred             HHHHHHHHH
Confidence            666555544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.27  E-value=2.1e-06  Score=45.11  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=10.4

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      |+.++.+|++.|+++.|.++|+.|.+.|
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g   31 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKEQG   31 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3333333333333333333333333333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.27  E-value=0.0017  Score=59.07  Aligned_cols=223  Identities=13%  Similarity=0.062  Sum_probs=131.5

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH
Q 018924           23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSA--YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL  100 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  100 (349)
                      ....+++.+|+.-...+.+.  .|+. .|..++.+  ..+.|+.++|..+++... ..+. -|..|...+-.+|.+.|+.
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~-~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALY-GLKG-TDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCC-CchHHHHHHHHHHHHHhhh
Confidence            34578899999999888776  3443 33344444  457899999998888876 4444 3788888899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC-C---------H
Q 018924          101 DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD-D---------L  170 (349)
Q Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---------~  170 (349)
                      ++|..+|++..+.  .|+. .....+..+|++.+++.+-.++--..-...+-....+-++++.....- .         .
T Consensus        94 d~~~~~Ye~~~~~--~P~e-ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   94 DEAVHLYERANQK--YPSE-ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             hHHHHHHHHHHhh--CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999999998874  4554 667777788888887765444332122244444555556666554321 1         1


Q ss_pred             HHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHH-HHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLV-NHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      .-|.+.++.+.+.+-+. +..-.-.....+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            23444444444432111 1111111222334456666666666 233333222233333444555556666666666666


Q ss_pred             HHHHH
Q 018924          249 KVLAA  253 (349)
Q Consensus       249 ~~~~~  253 (349)
                      +.+..
T Consensus       251 ~Ll~k  255 (932)
T KOG2053|consen  251 RLLEK  255 (932)
T ss_pred             HHHHh
Confidence            66654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.26  E-value=2e-05  Score=52.71  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHhhcCCCCCccHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGI-TYDRYTYCTRLSAYADAS--------DHEGIDKILTMMEADPNVALDWV   85 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~   85 (349)
                      +-..-|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..        +.-..+.+|+.|. ..+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence            334566777778999999999999999988 888899999988877642        2335677888888 777888888


Q ss_pred             HHHHHHHHHhh
Q 018924           86 IYATVGNGYGK   96 (349)
Q Consensus        86 ~~~~li~~~~~   96 (349)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            88888776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.25  E-value=3e-05  Score=65.95  Aligned_cols=117  Identities=10%  Similarity=0.087  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHH-HHHh--hccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWE-LYKK--AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID  197 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  197 (349)
                      .....+++.+....+.+.+..++- ....  ....-..|..++++.|...|..+.+..++..=...|+-||..++|.|++
T Consensus        67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd  146 (429)
T PF10037_consen   67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD  146 (429)
T ss_pred             HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence            345555555555555555555544 1111  1111123344666666666666666666666666666666666666666


Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      .+.+.|++..|.++...|...+.-.+..|+...+.+|.+-
T Consensus       147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            6666666666666666555544444444544444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.23  E-value=1.4e-06  Score=44.67  Aligned_cols=30  Identities=43%  Similarity=0.730  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGI   44 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~   44 (349)
                      +||++|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            688888888888888888888888877763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.20  E-value=0.0046  Score=56.46  Aligned_cols=209  Identities=11%  Similarity=0.003  Sum_probs=118.2

Q ss_pred             hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924            4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD   83 (349)
Q Consensus         4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~   83 (349)
                      |++++-.|-..++.++.  +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..   +.-|+
T Consensus        36 lkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~---~~~P~  109 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN---QKYPS  109 (932)
T ss_pred             HHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhCCc
Confidence            34443333333344333  45788888888777777665544 77788888888888888888888888887   33366


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc-CCHH---------HHHHHHH-HHHhhccC
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY-GKKD---------DVLRIWE-LYKKAVKV  152 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~---------~a~~~~~-~~~~~~~~  152 (349)
                      ..-...+..+|.+.+++.+-.++--++-+.  .|..+..+=+.++..... ...+         -|.+.++ +...+.+.
T Consensus       110 eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~  187 (932)
T KOG2053|consen  110 EELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI  187 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc
Confidence            666666777888877776544444444332  233323333334433322 2222         2233333 22222111


Q ss_pred             C-hhhHHHHHHHHhccCCHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          153 L-NNGYRNVISSLLKLDDLESAEKIFE-EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       153 ~-~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                      . ..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..+|.
T Consensus       188 ~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  188 ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            1 1111112223346777888888883 333332333444445667777788888888888888887763

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.19  E-value=0.00047  Score=61.43  Aligned_cols=189  Identities=17%  Similarity=0.210  Sum_probs=98.6

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924           58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD  137 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  137 (349)
                      ......|.+|+.+++.+. +.+.  -..-|..+.+-|+..|+++.|+++|-+.          ..++-.|..|.+.|+|.
T Consensus       742 ai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHH
Confidence            334455666666666555 3222  1222445556666666666666666542          23455566666666666


Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      .|.++-. .-.+.......|-+-..-.-+.|++.+|+++|-.+.    .|+.     -|.+|-+.|..+...++..+-.-
T Consensus       809 da~kla~-e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~  878 (1636)
T KOG3616|consen  809 DAFKLAE-ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG  878 (1636)
T ss_pred             HHHHHHH-HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence            6655544 112222333445444555555666666665553321    2332     45566666666666655543321


Q ss_pred             cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924          218 KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF  286 (349)
Q Consensus       218 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  286 (349)
                      .   .-..|...+..-|-..|+...|.+-|-+.-+              |.+-++.|...+.|++|-++
T Consensus       879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHH
Confidence            1   1123445566666667777777766655432              23444555555666555444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.18  E-value=0.00045  Score=56.72  Aligned_cols=91  Identities=18%  Similarity=0.092  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHHHc----Cc-ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-HHHHHHHHHHh
Q 018924          203 GLLEKAENLVNHEKLK----GR-EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-SLAACLDYFKD  276 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~  276 (349)
                      |+++.|.+.|++..+.    +. ..-..++..+...+.+.|++++|.++|+++..........+++.. .+...+-++..
T Consensus       129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            4555555555544421    10 001223445555566666666666666666543111111122221 22222334455


Q ss_pred             cCChhhHHHHHHHHhhC
Q 018924          277 EGDIGGAENFIELLNDK  293 (349)
Q Consensus       277 ~g~~~~a~~~~~~~~~~  293 (349)
                      .||...|...+++....
T Consensus       209 ~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  209 MGDYVAARKALERYCSQ  225 (282)
T ss_dssp             TT-HHHHHHHHHHHGTT
T ss_pred             cCCHHHHHHHHHHHHhh
Confidence            66666666666666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.15  E-value=0.00052  Score=63.02  Aligned_cols=183  Identities=10%  Similarity=-0.008  Sum_probs=130.9

Q ss_pred             ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924           28 NFEKLDSLMHEMEENGITYD-RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM  106 (349)
Q Consensus        28 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  106 (349)
                      +...|+..|-+..+..  |+ ...|..|...|...-+...|.+.|+... +.+. .+........+.|++..+++.|..+
T Consensus       473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF-eLDa-tdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF-ELDA-TDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence            3666777666665543  33 3478888888888778888999999887 5554 5667778899999999999999998


Q ss_pred             HHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 018924          107 LKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC  186 (349)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  186 (349)
                      .-..-+..+.......|.-..-.|.+.++...|+.-|+...+-.|-|...|..++++|.+.|++..|.++|.+....  .
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r  626 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R  626 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence            44333321111111234445556778889999999998656666677889999999999999999999999888764  4


Q ss_pred             CCcchHHH--HHHHHHhcCcHHHHHHHHHHHHH
Q 018924          187 YDTRIPNF--LIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       187 ~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      |+. +|..  ..-..|..|.+.+|...+..+..
T Consensus       627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            442 3332  33345678999999988887664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0017  Score=55.66  Aligned_cols=237  Identities=16%  Similarity=0.104  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH------
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT------   89 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------   89 (349)
                      ...+.+...+..++..|++-+.......  -+..-++....++...|.+.+....-+... +.|. -...-|+.      
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gr-e~rad~klIak~~~  302 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV-EVGR-ELRADYKLIAKALA  302 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhH-HHHHHHHHHHHHHH
Confidence            4556777778888888888888887764  355556666667777777777666555544 3333 22233332      


Q ss_pred             -HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-hhHHHHHHHHhcc
Q 018924           90 -VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-NGYRNVISSLLKL  167 (349)
Q Consensus        90 -li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~  167 (349)
                       +..+|.+.++++.++..|.+.......|+.          ..+....+++....+ ...-+.|.. .-...-...+.+.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~----------ls~lk~~Ek~~k~~e-~~a~~~pe~A~e~r~kGne~Fk~  371 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDL----------LSKLKEAEKALKEAE-RKAYINPEKAEEEREKGNEAFKK  371 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH----------HHHHHHHHHHHHHHH-HHHhhChhHHHHHHHHHHHHHhc
Confidence             334556667778888888775543222111          122233344443333 111122222 1222336667788


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM  247 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  247 (349)
                      |++..|...|.++++.. +.|...|..-..+|.+.|.+..|..-.+...+.++. ....|..=..++....++++|.+.|
T Consensus       372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay  449 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAY  449 (539)
T ss_pred             cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998888876 667788888888888899988888887777775422 3344555555555566788888888


Q ss_pred             HHHHHHhcccccCCCCHHHHHHHHHHHHh
Q 018924          248 KKVLAAYQTLVKWKPSVESLAACLDYFKD  276 (349)
Q Consensus       248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~  276 (349)
                      .+.++.       .|+..-+..-+.-|..
T Consensus       450 ~eale~-------dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  450 QEALEL-------DPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHhc-------CchhHHHHHHHHHHHH
Confidence            887743       5665544444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.13  E-value=0.0011  Score=54.44  Aligned_cols=135  Identities=15%  Similarity=0.106  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----cchh
Q 018924          157 YRNVISSLLKL-DDLESAEKIFEEWESQ----ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----IHVK  225 (349)
Q Consensus       157 ~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~  225 (349)
                      +..+...|-.. |+++.|.+.|++..+.    +.+. -..++..+...+.+.|++++|..+|+++...-..     .+..
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~  196 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK  196 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence            34556667777 8888888888887642    2110 1234567788899999999999999998764322     2222


Q ss_pred             -hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          226 -SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       226 -~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                       .|-..+-++...|++..|.+.+++....   .+++..+  ......|+.+| ..||.+.....+.+......
T Consensus       197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  197 EYFLKAILCHLAMGDYVAARKALERYCSQ---DPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCc
Confidence             2333444666789999999999998743   0122222  34556666665 56676666665555554433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.12  E-value=8.1e-05  Score=49.87  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCc-ccchhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGR-EIHVKSWYYLATGYRQNS--------QIHKAVEAMKKVLAAYQTLVKWKPSVE  265 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~p~~~  265 (349)
                      .|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..        ++-+.+.+|+.|+..     +++|+..
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-----~lKP~~e  105 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-----KLKPNDE  105 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-----ccCCcHH
Confidence            34444555777777777777777777 677777777777665532        355677888888887     8888888


Q ss_pred             HHHHHHHHHHh
Q 018924          266 SLAACLDYFKD  276 (349)
Q Consensus       266 ~~~~ll~~~~~  276 (349)
                      +|+.++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            88888887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.11  E-value=8.5e-05  Score=49.41  Aligned_cols=94  Identities=20%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      |..+...+.+.|++++|...++...+... .+...+..+..++...+++++|.+.++... .... .+..++..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKAL-ELDP-DNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-cchhHHHHHHHHHH
Confidence            44556666667777777777777765432 233556666666667777777777777665 3222 33345566666777


Q ss_pred             hcCcHHHHHHHHHHHHH
Q 018924           96 KVGLLDKALAMLKKSEE  112 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~  112 (349)
                      ..|++++|...+....+
T Consensus        80 ~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          80 KLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHhHHHHHHHHHHHHc
Confidence            77777777777666554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.10  E-value=2e-05  Score=51.47  Aligned_cols=80  Identities=23%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             cCcHHHHHHHHHHHHHcCcc-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCC
Q 018924          202 NGLLEKAENLVNHEKLKGRE-IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGD  279 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~  279 (349)
                      .|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .       ...|+ ......+..+|.+.|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-------~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-------KLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-------THHHCHHHHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-------CCCCCCHHHHHHHHHHHHHhCC
Confidence            35566666666666654431 1333444456666666666666666666 2       22222 2333344556666666


Q ss_pred             hhhHHHHHHH
Q 018924          280 IGGAENFIEL  289 (349)
Q Consensus       280 ~~~a~~~~~~  289 (349)
                      +++|..++++
T Consensus        74 y~eAi~~l~~   83 (84)
T PF12895_consen   74 YEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            6666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.08  E-value=0.00028  Score=49.47  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHH
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGIT--YDRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVGN   92 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~   92 (349)
                      +-.+...+.+.|++++|.+.|..+.+....  .....+..+..++.+.|+++.|...++.+.... +.+.....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344455555556666666666555543211  012234445555555566666666655554111 11111333444555


Q ss_pred             HHhhcCcHHHHHHHHHHHHHh
Q 018924           93 GYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      ++.+.|+.++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            555555555555555555553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.06  E-value=0.0001  Score=49.06  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=9.4

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKSE  111 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~  111 (349)
                      +...+...|++++|...+++..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~   27 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKAL   27 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHH
Confidence            3334444444444444444443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.05  E-value=0.00019  Score=58.69  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      +|..++...-+.+..+.|..+|.+..+.+ ..+. .+|-..... +...++.+.|.++|+.....++.+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~-~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTY-HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-T-HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            45566666666666666666666665321 1122 344444433 22245555566666644444555555566666666


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      .+.++.+.|..+|+..... +.++.   ..|...+..-.+.|+++.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666543 22221   3566666666666666666666666655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.05  E-value=0.00016  Score=61.36  Aligned_cols=88  Identities=13%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      ..+...|+++.|...|+++++.. +.+...|..+..+|.+.|++++|...++++...... +...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence            34445566666666666665543 334445555556666666666666666666654332 4445555666666666666


Q ss_pred             HHHHHHHHHH
Q 018924          242 KAVEAMKKVL  251 (349)
Q Consensus       242 ~a~~~~~~~~  251 (349)
                      +|+..|++++
T Consensus        88 eA~~~~~~al   97 (356)
T PLN03088         88 TAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHH
Confidence            6666666666

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.04  E-value=8e-06  Score=41.79  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      |+.++++|++.|++++|.++|++|.+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            44444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.03  E-value=0.0048  Score=53.21  Aligned_cols=214  Identities=9%  Similarity=-0.019  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH
Q 018924           64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKV---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL  140 (349)
Q Consensus        64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  140 (349)
                      .+++..+++... ..-...+..+|..+...--..   ...+.....++++...-....+ -+|..+++...+..-.+.|.
T Consensus       309 t~e~~~~yEr~I-~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR  386 (656)
T KOG1914|consen  309 TDEAASIYERAI-EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAAR  386 (656)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHH
Confidence            345556666554 222223334443333221111   1355666677766554322233 48999999999999999999


Q ss_pred             HHHH-HHHhhccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          141 RIWE-LYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       141 ~~~~-~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .+|. ....+..+ +...+++++..+| +++...|.++|+--.+. ...++..-...++.+...++-..+..+|++....
T Consensus       387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            9999 55555555 6677888888776 57888999999876554 2334455567888889999999999999999987


Q ss_pred             Ccccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924          219 GREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA  283 (349)
Q Consensus       219 ~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a  283 (349)
                      ++.||  ...|..++.--..-|+...+.++-+++...++..  ..|...+-..+++.|.-.+....-
T Consensus       465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~--qe~~~~~~~~~v~RY~~~d~~~c~  529 (656)
T KOG1914|consen  465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD--QEYEGNETALFVDRYGILDLYPCS  529 (656)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh--hcCCCChHHHHHHHHhhccccccc
Confidence            55544  4689999998889999999999988887642211  112222334455555555554433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.02  E-value=4e-05  Score=50.03  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=20.3

Q ss_pred             CcHHHHHHHHHHHHHhhcC-CcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           98 GLLDKALAMLKKSEEQIKG-AKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        98 g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      |+++.|+.+++++.+..+. ++. ..+..+..++.+.|++++|..+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~-~~~~~la~~~~~~~~y~~A~~~~~   49 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNS-AYLYNLAQCYFQQGKYEEAIELLQ   49 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHH-HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhH-HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4445555555555443331 122 233334555555555555555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.01  E-value=0.00098  Score=50.29  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +..+...+...|++++|...|++.....+.++ ....+..+...+.+.|++++|...++
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444445555555555555555543322211 11344445555555555555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.99  E-value=0.00041  Score=56.73  Aligned_cols=131  Identities=11%  Similarity=0.068  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK-VGLLDKALAMLKKSEEQIKGAKVNSAYNVIL  127 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  127 (349)
                      .+|..+++..-+.+..+.|..+|.+.. +.+. .+..+|-.....-.+ .++.+.|.++|+...+. ...+. ..|...+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~-~~~~~Y~   77 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRAR-KDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDP-DFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-H-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHH-cCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCH-HHHHHHH
Confidence            467788888888888888888888887 4332 334445444444233 46666688888888875 23333 6788888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhhccCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924          128 TLYGKYGKKDDVLRIWELYKKAVKVLN---NGYRNVISSLLKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~  183 (349)
                      ..+...|+.+.|..+|+.....++++.   ..|...+..=.+.|+.+.+.++.+.+.+.
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888888888888888884444444333   47888888888888888888888887774

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.98  E-value=0.00048  Score=49.80  Aligned_cols=93  Identities=8%  Similarity=-0.115  Sum_probs=48.5

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  167 (349)
                      -.+...+...|++++|.++|+-+..-  .|....-|-.|..++-..|++++|+..|.....-.+.|+..+..+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            34444555555566666555555542  3333245555555555555666665555533222334445555555555555


Q ss_pred             CCHHHHHHHHHHHHh
Q 018924          168 DDLESAEKIFEEWES  182 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~  182 (349)
                      |+.+.|.+.|+....
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=1.4e-05  Score=63.09  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--  311 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--  311 (349)
                      +.+++.+|+..|.+++       .+.| |...|..=..+|++.|.++.|.+-.+.....++.....|..|. +|...|  
T Consensus        93 ~~~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HhhhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            3445555555555554       2233 3333444444455555555555544444444444444455555 444444  


Q ss_pred             cchHHHHHHHHhCCCCCCcccccCCCCChhH
Q 018924          312 KSNLETLRELYGNSLAGNEETLSGPEGDTSD  342 (349)
Q Consensus       312 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~  342 (349)
                      ++|++.|++..+  +.|+..+|...|+-|..
T Consensus       166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~  194 (304)
T KOG0553|consen  166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQ  194 (304)
T ss_pred             HHHHHHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence            444444444433  34555554444444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.95  E-value=0.00037  Score=57.78  Aligned_cols=271  Identities=19%  Similarity=0.110  Sum_probs=166.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHh--h-cCCCCC-ccHHHHHHHHH
Q 018924           21 KLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMM--E-ADPNVA-LDWVIYATVGN   92 (349)
Q Consensus        21 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~-~~~~~~-~~~~~~~~li~   92 (349)
                      .-+++.|+....+.+|+..++.|-. |.    .+|..|-++|.-.+++++|+++...=  . +..|-+ -....-..|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3578999999999999999998743 33    46777888888889999998875321  0 000100 11122223555


Q ss_pred             HHhhcCcHHHHHHHHHH----HHHhhcCCcchhhHHHHHHHHhhcCC--------------------HHHHHHHHHH---
Q 018924           93 GYGKVGLLDKALAMLKK----SEEQIKGAKVNSAYNVILTLYGKYGK--------------------KDDVLRIWEL---  145 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~---  145 (349)
                      .+--.|.+++|.-.-.+    ..+.|-......++..+...|...|+                    ++.|.++|..   
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            56666777776543221    12222222222566667777765542                    2445555541   


Q ss_pred             H--Hhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHH----hcCCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          146 Y--KKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWE----SQALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       146 ~--~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      .  ..+.. .-...|..+...|.-.|+++.|....+.-+    +.|-. .....+..+..++.-.|+++.|.+.|+.-..
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            1  11111 122456677777777889999887665432    22211 1234567788888899999999998886542


Q ss_pred             ----cC-cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          218 ----KG-REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       218 ----~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                          .| -.....+.-+|...|.-...+++|+.++.+-+.-.+.-....-....+.+|..+|...|..++|..+...-.+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                11 1223456667888888888999999998876543111112222456788899999999999999887665443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.95  E-value=0.00027  Score=53.55  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             CChhhHHHHHHHHh-----ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh
Q 018924          152 VLNNGYRNVISSLL-----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS  226 (349)
Q Consensus       152 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  226 (349)
                      .+..+|..++..+.     +.|+.+-....+..|.+.|+.-|..+|+.|++.+=+ |.+-               |.. .
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence            34455555555554     345666666666667777777777777776666543 1110               000 0


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD  279 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~  279 (349)
                      +.++..  -...+.+-|++++++|...     |+-||..|+..|++.+.+.+.
T Consensus       108 fQ~~F~--hyp~Qq~c~i~lL~qME~~-----gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  108 FQAEFM--HYPRQQECAIDLLEQMENN-----GVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHhc--cCcHHHHHHHHHHHHHHHc-----CCCCcHHHHHHHHHHhccccH
Confidence            001110  0112345566666666666     666666666666666655543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.94  E-value=0.00044  Score=51.98  Aligned_cols=58  Identities=14%  Similarity=0.023  Sum_probs=25.6

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-VNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      |..+...+...|++++|+..|++.......+. ...+|..+...+...|++++|+..++
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~   96 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF   96 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444444445555555555554443211111 11244444455555555555555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.94  E-value=0.00059  Score=51.49  Aligned_cols=88  Identities=11%  Similarity=-0.030  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CC-hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-VL-NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID  197 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  197 (349)
                      ..+..+...+...|++++|...|+ ....... ++ ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence            345556666666666666666666 2211111 11 2345555566666666666666666655532 222334444445


Q ss_pred             HHHhcCcHHHHH
Q 018924          198 VYCRNGLLEKAE  209 (349)
Q Consensus       198 ~~~~~~~~~~a~  209 (349)
                      ++...|+...+.
T Consensus       115 ~~~~~g~~~~a~  126 (172)
T PRK02603        115 IYHKRGEKAEEA  126 (172)
T ss_pred             HHHHcCChHhHh
Confidence            555555544443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=0.00038  Score=59.06  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG   98 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   98 (349)
                      ....+...|++++|++.|.+.++.+.. +...|..+..+|...|++++|+..+++.. ..+. .+...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P-~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAI-ELDP-SLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHhC
Confidence            345667889999999999999987543 66788888899999999999999999988 5443 46677888999999999


Q ss_pred             cHHHHHHHHHHHHHhhcCCcc
Q 018924           99 LLDKALAMLKKSEEQIKGAKV  119 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~  119 (349)
                      ++++|...|++..+.  .|+.
T Consensus        85 ~~~eA~~~~~~al~l--~P~~  103 (356)
T PLN03088         85 EYQTAKAALEKGASL--APGD  103 (356)
T ss_pred             CHHHHHHHHHHHHHh--CCCC
Confidence            999999999999874  4554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.92  E-value=0.00029  Score=50.85  Aligned_cols=93  Identities=12%  Similarity=0.073  Sum_probs=58.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  238 (349)
                      .+..-+...|++++|..+|+.+.... +.+..-|..|..++-..|++++|...|......++. |+..+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence            33444556677777777776666543 233444556666666677777777777766665543 5566666666777777


Q ss_pred             CHHHHHHHHHHHHHH
Q 018924          239 QIHKAVEAMKKVLAA  253 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~  253 (349)
                      +.+.|.+.|+..+..
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            777777777766654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.91  E-value=0.0031  Score=56.03  Aligned_cols=193  Identities=16%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR  201 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  201 (349)
                      +|+.+...+.....|++|.+.|...  +      --...+.++.+..++++-+.+.+.     ++-+....-.+.+++.+
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~--~------~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~s  864 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYC--G------DTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTS  864 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--c------chHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHh
Confidence            4555555555555566665555510  0      011234444444444444333333     34455666777888888


Q ss_pred             cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH--------------
Q 018924          202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL--------------  267 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~--------------  267 (349)
                      .|.-++|.+.|-+...    |     ...+..|...++|.+|.++-++..         -|...|.              
T Consensus       865 vGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~---------l~qv~tliak~aaqll~~~~~  926 (1189)
T KOG2041|consen  865 VGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ---------LPQVQTLIAKQAAQLLADANH  926 (1189)
T ss_pred             hchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc---------chhHHHHHHHHHHHHHhhcch
Confidence            8888888776644322    2     234556777777777777765532         1222221              


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhC----CCCCchhHHH-Hh-hhhhcC-cchHHHHHHHHhCCCCCCccc--ccCCCC
Q 018924          268 AACLDYFKDEGDIGGAENFIELLNDK----GFIPTDLQDK-LL-DNVQNG-KSNLETLRELYGNSLAGNEET--LSGPEG  338 (349)
Q Consensus       268 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~-l~-~~~~~g-~~a~~~~~~m~~~~~~p~~~t--~~~~l~  338 (349)
                      .--|..+.+.|..-.|-+++.+|.+.    +.|....-.. ++ ++.-.. .++++-.+.....|...|...  -..++.
T Consensus       927 ~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~ 1006 (1189)
T KOG2041|consen  927 MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLA 1006 (1189)
T ss_pred             HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhh
Confidence            11233455667766666666666543    3333332111 22 333333 556666666666666555443  233445


Q ss_pred             ChhHHHH
Q 018924          339 DTSDLIE  345 (349)
Q Consensus       339 ~~~~~~~  345 (349)
                      +.+++.+
T Consensus      1007 ~~~ri~~ 1013 (1189)
T KOG2041|consen 1007 EQSRILE 1013 (1189)
T ss_pred             hHHHHHH
Confidence            5555444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.89  E-value=0.00068  Score=50.95  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHHHHHHHhhcCcHHHHHH
Q 018924           29 FEKLDSLMHEMEE-NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYATVGNGYGKVGLLDKALA  105 (349)
Q Consensus        29 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~  105 (349)
                      +..+...+..+.+ .+..-....|..+...+...|++++|...+++.. .....+  ...++..+...+...|++++|+.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM-RLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            4445555555532 2222223466777777888899999999999886 332222  23577888899999999999999


Q ss_pred             HHHHHHHhhcCCcchhhHHHHHHHHh-------hcCCHHHHHHHHH
Q 018924          106 MLKKSEEQIKGAKVNSAYNVILTLYG-------KYGKKDDVLRIWE  144 (349)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~  144 (349)
                      .+++....  .|....++..+...+.       ..|+++.|+..++
T Consensus        94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            99988864  3443356666666666       5566665554444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.82  E-value=0.00041  Score=55.09  Aligned_cols=97  Identities=16%  Similarity=-0.028  Sum_probs=57.6

Q ss_pred             HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924          129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  208 (349)
                      -+.+.++|.+|+..|.....-.+-|.+-|..-..+|++.|.++.|.+-.+..+... +.-...|..|..+|...|++++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence            34556666666666664444444555566666666666666666666666665532 22234566666666666666666


Q ss_pred             HHHHHHHHHcCcccchhhHH
Q 018924          209 ENLVNHEKLKGREIHVKSWY  228 (349)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~  228 (349)
                      .+.|++.++  +.|+-.+|.
T Consensus       169 ~~aykKaLe--ldP~Ne~~K  186 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYK  186 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHH
Confidence            666666666  335544443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.82  E-value=0.011  Score=47.31  Aligned_cols=61  Identities=11%  Similarity=0.196  Sum_probs=45.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .+..-|.+.|.+..|..-++.+++.++   +..........+..+|...|..++|..+...+..
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            455668888899889999999887633   2233456677788888899999998887766543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.80  E-value=0.0016  Score=57.88  Aligned_cols=134  Identities=11%  Similarity=-0.064  Sum_probs=60.7

Q ss_pred             CCccHHHHHHHHHHHhhc-----CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH--------HHHHHHHHHH
Q 018924           80 VALDWVIYATVGNGYGKV-----GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK--------DDVLRIWELY  146 (349)
Q Consensus        80 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~  146 (349)
                      .+.+...|...+.+....     ++...|..+|++..+.  .|+...+|..+..++.....+        ..+.+..+..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345666666666654332     2355777777777763  455534555444433222111        1111111100


Q ss_pred             -H-hhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          147 -K-KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       147 -~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                       . ...+.+...|..+...+...|++++|...++++...+  |+...|..+...+...|+.++|...+++...
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             0 0122223344444444444455555555555554432  3444455555555555555555555555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.79  E-value=0.0024  Score=56.76  Aligned_cols=139  Identities=12%  Similarity=-0.033  Sum_probs=95.8

Q ss_pred             ccCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc--------CcHHHHHHHHHHH
Q 018924          150 VKVLNNGYRNVISSLLKL-----DDLESAEKIFEEWESQALCYD-TRIPNFLIDVYCRN--------GLLEKAENLVNHE  215 (349)
Q Consensus       150 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~  215 (349)
                      .+.+...|...+++....     ++...|..+|++..+.  .|+ ...|..+..++...        .++..+.+...+.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345567788887775432     2367899999999885  444 34455444444332        1233444444443


Q ss_pred             HHc-CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924          216 KLK-GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       216 ~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  294 (349)
                      ... ....+...|..+.......|++++|...+++++.       +.|+...|..+...+...|+.++|.+.+++.....
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            332 1223456777776667778999999999999994       46888899999999999999999999999998887


Q ss_pred             CCC
Q 018924          295 FIP  297 (349)
Q Consensus       295 ~~~  297 (349)
                      |.+
T Consensus       484 P~~  486 (517)
T PRK10153        484 PGE  486 (517)
T ss_pred             CCC
Confidence            643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.78  E-value=0.012  Score=46.94  Aligned_cols=179  Identities=11%  Similarity=0.025  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH--HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWV--IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY  130 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (349)
                      .....+...|++++|.+.|+.+. .....+...  ..-.++.++.+.+++++|...+++..+..+..+. ..|...+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~-~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~  114 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHH
Confidence            34455667899999999999887 322222111  1235677888899999999999998886555444 4444444443


Q ss_pred             hh-----------------cCCHHH---HHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc
Q 018924          131 GK-----------------YGKKDD---VLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR  190 (349)
Q Consensus       131 ~~-----------------~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  190 (349)
                      +.                 ..|...   |+..|+......| ++             .-..+|...+..+... +   ..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP-~S-------------~ya~~A~~rl~~l~~~-l---a~  176 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP-NS-------------QYTTDATKRLVFLKDR-L---AK  176 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc-CC-------------hhHHHHHHHHHHHHHH-H---HH
Confidence            21                 124443   4444442223332 22             2233343333333221 0   00


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcC--cccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKG--REIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .--.+...|.+.|.+..|..-++.+.+.-  .+........++.+|...|..++|.++.....
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            11135566777788888888887777642  12233455667778888888888777665543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.00036  Score=52.92  Aligned_cols=112  Identities=12%  Similarity=0.081  Sum_probs=81.9

Q ss_pred             CCCcchHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccC
Q 018924          186 CYDTRIPNFLIDVYCR-----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW  260 (349)
Q Consensus       186 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  260 (349)
                      ..|..+|..+++.|.+     .|+++-....++.|.+-|+..|..+|+.|+..+-+ |.+- -..+|+.+-.        
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence            4466777778887765     47888899999999999999999999999998875 3332 2223333321        


Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CCchhHHHHh-hhhhcC---cchHHHHHHH
Q 018924          261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF-IPTDLQDKLL-DNVQNG---KSNLETLREL  321 (349)
Q Consensus       261 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~-~~~~~g---~~a~~~~~~m  321 (349)
                                  -  .-.+-+-|.+++++|...|. ||..++..++ .+.+.+   .+...+.--|
T Consensus       114 ------------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm  165 (228)
T PF06239_consen  114 ------------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM  165 (228)
T ss_pred             ------------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                        1  12355778999999999998 9999999999 999888   4444444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.73  E-value=0.001  Score=55.25  Aligned_cols=266  Identities=14%  Similarity=-0.011  Sum_probs=164.3

Q ss_pred             HHHhcCChHHHHHHHHHhhcCCCCCcc----HHHHHHHHHHHhhcCcHHHHHHHHHH--HHHh--hcCCcchhhHHHHHH
Q 018924           57 AYADASDHEGIDKILTMMEADPNVALD----WVIYATVGNGYGKVGLLDKALAMLKK--SEEQ--IKGAKVNSAYNVILT  128 (349)
Q Consensus        57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~--~~~~~~~~~~~~l~~  128 (349)
                      -+++.|+......+|+... ..|. -|    ..+|..|.++|.-.+++++|++....  ...+  |-......+-..|.+
T Consensus        26 RLck~gdcraGv~ff~aA~-qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAAL-QVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHhccchhhhHHHHHHHH-Hhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            4788999999999999887 5554 33    34567788888888899999885432  1111  112222134455677


Q ss_pred             HHhhcCCHHHHHHHHH-H----HHhhcc-CChhhHHHHHHHHhccCC--------------------HHHHHHHHHHHH-
Q 018924          129 LYGKYGKKDDVLRIWE-L----YKKAVK-VLNNGYRNVISSLLKLDD--------------------LESAEKIFEEWE-  181 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~-~----~~~~~~-~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~-  181 (349)
                      .+-..|.+++|+-... .    ...|.+ .....+..+...|...|+                    ++.|.++|.+=+ 
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            7777888888876544 1    111211 223456666676765443                    233444443322 


Q ss_pred             ---hcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHH----HcCcc-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          182 ---SQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEK----LKGRE-IHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       182 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                         +.|- -.-...|..|...|.-.|+++.|....+.-.    +.|-+ ..-..+..+..++.-.|+++.|.+.|+....
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence               1111 1123456667777777889999987665322    22211 1234677888899999999999999998765


Q ss_pred             HhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          253 AYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK------GFIPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       253 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      ...+-..-.....+..+|..+|.-..++++|+.++.+-...      .+.....++++. +|..-|  ++|+...+.-.+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            41111112234556677888888888999999887643321      224556788888 888877  778777666544


Q ss_pred             C
Q 018924          324 N  324 (349)
Q Consensus       324 ~  324 (349)
                      .
T Consensus       344 ~  344 (639)
T KOG1130|consen  344 S  344 (639)
T ss_pred             H
Confidence            3

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.73  E-value=0.00032  Score=43.09  Aligned_cols=57  Identities=14%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...+.+.|++++|...|+.+.+..+. +...+..+..++...|++++|..+|+++++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556666666666666666665532 5556666666666666666666666666643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.0025  Score=50.99  Aligned_cols=102  Identities=18%  Similarity=0.039  Sum_probs=52.6

Q ss_pred             CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcccccCCC
Q 018924          186 CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHKAVEAMKKVLAAYQTLVKWKP  262 (349)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~p  262 (349)
                      +-|...|-.|...|...|+.+.|...|....+... +++..+..+..++...   ..-.++.++|++++.       ..|
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~  224 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALA-------LDP  224 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCC
Confidence            44555566666666666666666666655554321 2333444444433222   233455566666653       234


Q ss_pred             -CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          263 -SVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       263 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                       |......|...+...|++.+|...|+.|.+..+
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence             344444455556666666666666666665544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.69  E-value=0.00027  Score=43.91  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          202 NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .|++++|...|+.+....+. +...+..+..+|.+.|++++|.++++++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444444443322 33333344444444444444444444444

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.69  E-value=0.011  Score=43.84  Aligned_cols=96  Identities=6%  Similarity=0.045  Sum_probs=43.7

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFLIDVY  199 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  199 (349)
                      .--.|..+..+.|++.+|...|+....|+- -|......+.++....+++..|...++.+.+.+.. .++...-.+.+.|
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            334455555555555555555553333322 33344444445555555555555555554442210 0111222344445


Q ss_pred             HhcCcHHHHHHHHHHHHH
Q 018924          200 CRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       200 ~~~~~~~~a~~~~~~~~~  217 (349)
                      ...|++.+|+..|+....
T Consensus       171 aa~g~~a~Aesafe~a~~  188 (251)
T COG4700         171 AAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HhcCCchhHHHHHHHHHH
Confidence            555555555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.66  E-value=0.00024  Score=44.18  Aligned_cols=51  Identities=10%  Similarity=0.190  Sum_probs=33.9

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      .+.|++++|+++|+.+...... +...+..+..+|.+.|++++|..+++.+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567777777777777665332 55566667777777777777777777766

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.65  E-value=0.00034  Score=43.61  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 018924          189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLA  252 (349)
Q Consensus       189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~  252 (349)
                      ..+|..+...+...|++++|...|++..+.++. +...|..+..+|...| ++++|++.+++.++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345555666666666666666666666665432 4555666666666666 56666666666654

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.60  E-value=0.0068  Score=42.23  Aligned_cols=54  Identities=15%  Similarity=0.123  Sum_probs=22.0

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           58 YADASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      +-..|+.++|+.+|++.. ..|....  ...+-.+...+...|++++|..+|++...
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444 3333221  12222334444444444444444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.55  E-value=0.008  Score=41.86  Aligned_cols=10  Identities=20%  Similarity=0.046  Sum_probs=3.7

Q ss_pred             cCcHHHHHHH
Q 018924          202 NGLLEKAENL  211 (349)
Q Consensus       202 ~~~~~~a~~~  211 (349)
                      .|+.++|...
T Consensus        88 ~gr~~eAl~~   97 (120)
T PF12688_consen   88 LGRPKEALEW   97 (120)
T ss_pred             CCCHHHHHHH
Confidence            3333333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.52  E-value=0.027  Score=43.77  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF  274 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~  274 (349)
                      ++.-|=.+....+|...+..+.+.   . ...--.+...|.+.|.+..|..-++.+++.++   +..........++.+|
T Consensus       116 li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y  188 (203)
T PF13525_consen  116 LIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAY  188 (203)
T ss_dssp             HHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHH
T ss_pred             HHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHH
Confidence            333333344455555555544431   0 01112356678888888888888888887622   1111234567777888


Q ss_pred             HhcCChhhHH
Q 018924          275 KDEGDIGGAE  284 (349)
Q Consensus       275 ~~~g~~~~a~  284 (349)
                      .+.|..+.+.
T Consensus       189 ~~l~~~~~a~  198 (203)
T PF13525_consen  189 YKLGLKQAAD  198 (203)
T ss_dssp             HHTT-HHHHH
T ss_pred             HHhCChHHHH
Confidence            8888877544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.47  E-value=0.0013  Score=40.29  Aligned_cols=54  Identities=17%  Similarity=0.089  Sum_probs=25.3

Q ss_pred             HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      .+.+.|++++|...|+++. +... -+...+..+..++...|++++|...|+++.+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l-~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQAL-KQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHH-CCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555554 3221 2444444455555555555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.44  E-value=0.006  Score=49.19  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA  269 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  269 (349)
                      |...+..+.+.|++++|...|+.+.+..+...  ...+-.+...|...|++++|...|+.+.+.++   +-......+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~k  222 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHH
Confidence            33333333445666666666666665432211  13445556666666666666666666664311   00011333334


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          270 CLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       270 ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      +...+...|+.++|..+++.+.+..|
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            44455566666666666666665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.0014  Score=47.94  Aligned_cols=74  Identities=14%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES  266 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  266 (349)
                      ...++..+...|+++.|..+.+.+....+- |...|..+|.+|...|+...|.+.|+.+.....+..|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            444556666677777777777777765543 56677777777777777777777777776655555577776655

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.41  E-value=0.0075  Score=48.62  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD--RYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVG   91 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li   91 (349)
                      .|+..+....+.|++++|...|+.+++......  ...+..+..+|...|++++|...|+.+.... +-+.....+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            345444444555666666666666665421100  2345555666666666666666666654111 1111233333445


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      .++...|+.++|.++|+++.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            5555666666666666666553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.41  E-value=0.00099  Score=41.46  Aligned_cols=62  Identities=18%  Similarity=0.065  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-cHHHHHHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKL  217 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~  217 (349)
                      ..|..+...+...|++++|...|.+..+.. +.+...|..+..+|...| ++++|.+.++...+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345555556666666666666666665543 334455555666666666 56666666665554

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.045  Score=43.09  Aligned_cols=130  Identities=8%  Similarity=0.012  Sum_probs=73.2

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH---
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID---  197 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---  197 (349)
                      +.+.++..+...+.+.-....++ ......+.++...+.+++.-.+.|+.+.|...|+...+..-..|..+.+.++.   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34555666666666666666666 33333345555666666666777777777777776655433344444433332   


Q ss_pred             --HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          198 --VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       198 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                        .|.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+..+|++.+..|++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence              334455666666666666654432 444444444444446667777777777663

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.35  E-value=0.00094  Score=42.77  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                      .+|+.+...|...|++++|++.|++.++.......-.|+ ..++..+..++...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345666666666666666666666666441111111122 4455666666666666666666666543

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.33  E-value=0.037  Score=49.18  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=147.6

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhhcC
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSL---------MHEMEENGITYDRYTYCTRLSAYADASDHE--GIDKILTMMEAD   77 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~   77 (349)
                      +.|..+.+.+-+-.|.+.|.+++|..+         ++.+...  ..+.-.++..=.+|.+..+..  +...-+++++ +
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k-~  628 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERK-K  628 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH-h
Confidence            455666677777788889998888654         1221111  012233445555666666543  3334455666 6


Q ss_pred             CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH-----HHHHHHhhcCCHHHHHHHHH-H--HHhh
Q 018924           78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN-----VILTLYGKYGKKDDVLRIWE-L--YKKA  149 (349)
Q Consensus        78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~-~--~~~~  149 (349)
                      .|-.|+...   +...++-.|++.+|-++|.+-   |.+...-..|+     -...-+...|+.++-..+.+ .  ....
T Consensus       629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~  702 (1081)
T KOG1538|consen  629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN  702 (1081)
T ss_pred             cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence            676688765   677788889999999988764   21111111222     12334455555555554544 1  1112


Q ss_pred             ccCChhhHHHHHHHHhccCCHHHHHHHHHH------HHhcCC---CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          150 VKVLNNGYRNVISSLLKLDDLESAEKIFEE------WESQAL---CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       150 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                      ++..    .+....+...|+.++|..+.-+      +.+-+-   ..+..+...+...+-+...+.-|.++|..|-+.  
T Consensus       703 ~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--  776 (1081)
T KOG1538|consen  703 IKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--  776 (1081)
T ss_pred             cCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--
Confidence            2211    1334445566776666654321      111111   223334444444455566777888888777542  


Q ss_pred             ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHH
Q 018924          221 EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE-----------SLAACLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       221 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~  289 (349)
                             ..++......++|++|..+-++.-       ...||..           -|.-.-++|.+.|+-.+|.+++++
T Consensus       777 -------ksiVqlHve~~~W~eAFalAe~hP-------e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ  842 (1081)
T KOG1538|consen  777 -------KSLVQLHVETQRWDEAFALAEKHP-------EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ  842 (1081)
T ss_pred             -------HHHhhheeecccchHhHhhhhhCc-------cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence                   346677788899999998887754       4455532           234444678899999999999988


Q ss_pred             HhhC
Q 018924          290 LNDK  293 (349)
Q Consensus       290 ~~~~  293 (349)
                      +...
T Consensus       843 Ltnn  846 (1081)
T KOG1538|consen  843 LTNN  846 (1081)
T ss_pred             hhhh
Confidence            8664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.046  Score=43.03  Aligned_cols=184  Identities=9%  Similarity=-0.044  Sum_probs=117.3

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924           25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  104 (349)
                      ..|+..+.+.-+..++..        ....+...-.....+..+..|++-.        ..+-+.++.++.-.|.+.-..
T Consensus       134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~  197 (366)
T KOG2796|consen  134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSV  197 (366)
T ss_pred             hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhH
Confidence            357777776666555432        1223333333333455666666544        134556777777788888888


Q ss_pred             HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHH-----HHHHHhccCCHHHHHHHHH
Q 018924          105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRN-----VISSLLKLDDLESAEKIFE  178 (349)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~  178 (349)
                      .++.+.++..++.++ .....|++.-.+.||.+.|...|+ ..+...+.+..+.+.     ....+...+++..|...+.
T Consensus       198 d~~~~vi~~~~e~~p-~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~  276 (366)
T KOG2796|consen  198 DAYHSVIKYYPEQEP-QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT  276 (366)
T ss_pred             HHHHHHHHhCCcccH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence            888888887666666 778888888888999999998888 333333444444433     3345556778888888888


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH
Q 018924          179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY  228 (349)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  228 (349)
                      +..... +.|+...|.=.-+..-.|+..+|.+.++.|....  |...+-+
T Consensus       277 ~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e  323 (366)
T KOG2796|consen  277 EILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE  323 (366)
T ss_pred             hccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence            777654 3344444443333444688999999999998854  4444333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.27  E-value=0.044  Score=40.78  Aligned_cols=159  Identities=14%  Similarity=0.006  Sum_probs=110.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .+..+..+.=|++....   +..++....|+...-..|..+..+.|+..+|...|++... |+..+.+.....+.++...
T Consensus        61 ~~~~a~~q~ldP~R~~R---ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa  136 (251)
T COG4700          61 TLLMALQQKLDPERHLR---EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFA  136 (251)
T ss_pred             HHHHHHHHhcChhHHHH---HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHh
Confidence            34445555555554432   2222334557777777899999999999999999999887 4555554788889999999


Q ss_pred             cCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHH
Q 018924          133 YGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAEN  210 (349)
Q Consensus       133 ~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  210 (349)
                      .+++..|...++ ..... ...++.+...+.+.+...|.+..|+..|+.....  -|+...--.....+.+.|+.+++..
T Consensus       137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            999999999999 33322 1123344667788899999999999999999885  3444333334455677887776665


Q ss_pred             HHHHHHH
Q 018924          211 LVNHEKL  217 (349)
Q Consensus       211 ~~~~~~~  217 (349)
                      -+..+.+
T Consensus       215 q~~~v~d  221 (251)
T COG4700         215 QYVAVVD  221 (251)
T ss_pred             HHHHHHH
Confidence            5544443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.033  Score=44.78  Aligned_cols=106  Identities=13%  Similarity=0.056  Sum_probs=65.9

Q ss_pred             HHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcCccc
Q 018924          146 YKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       146 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~  222 (349)
                      .....+-|...|-.|..+|...|+.+.|...|....+.. +++...+..+..++....   ...++..+|+++...+.. 
T Consensus       148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-  225 (287)
T COG4235         148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-  225 (287)
T ss_pred             HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence            334455566677777777777777777777777766642 344555555555544332   245667777777765443 


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      |+.+...|...+...|++.+|...|+.|++.
T Consensus       226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            5555556666677777777777777777765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.22  E-value=0.0072  Score=42.54  Aligned_cols=100  Identities=10%  Similarity=0.117  Sum_probs=54.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      |..++..+|.++++.|+.+....+++..-  |+.++...         ..+.          ........|+..+..+++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv   59 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV   59 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence            34566777777777777777777765542  22211100         0000          111334456666666666


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .+|+..|++..|.++.+...+.-.-+-+...|..|+.-...
T Consensus        60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            66666677777766666665543222223566666655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.22  E-value=0.004  Score=39.19  Aligned_cols=53  Identities=17%  Similarity=0.240  Sum_probs=26.2

Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .|.+.++++.|.++++.+...++. ++..|......+...|++++|.+.|+...
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344455555555555555544332 33444444445555555555555555555

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.18  E-value=0.011  Score=41.62  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      |..++..++.++++.|+++....+++..-   |+.++...         ..+.         --......|+. .+..++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~---------~~~~---------~~~~spl~Pt~-~lL~AI   58 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKK---------KEGD---------YPPSSPLYPTS-RLLIAI   58 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCcc---------ccCc---------cCCCCCCCCCH-HHHHHH
Confidence            45678888888888888888888876654   33322211         0000         11122456777 999999


Q ss_pred             HHHHhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHhccC
Q 018924          127 LTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      +.+|+.+|++..|.++.+  +...+++.+..+|..|++-+....
T Consensus        59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999  566677777889999998665433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.15  E-value=0.12  Score=43.59  Aligned_cols=95  Identities=9%  Similarity=0.029  Sum_probs=55.1

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhc--CCcchhhHHHHHHHHhh---cCCHHHHHHHHH-HHHhhccCChhhHHHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIK--GAKVNSAYNVILTLYGK---YGKKDDVLRIWE-LYKKAVKVLNNGYRNVI  161 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~-~~~~~~~~~~~~~~~li  161 (349)
                      ..++-.|-...+++..+++.+.+.....  .++.+.+-....-++.+   .|+.++|++++. .......+++.+|..+.
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            3455567777888888888887765310  11111223344455555   777788887777 45556666777777776


Q ss_pred             HHHhc---------cCCHHHHHHHHHHHHh
Q 018924          162 SSLLK---------LDDLESAEKIFEEWES  182 (349)
Q Consensus       162 ~~~~~---------~~~~~~a~~~~~~~~~  182 (349)
                      ..|..         ....++|...|.+.-+
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            66542         1124555555555444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.13  E-value=0.011  Score=43.17  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=34.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH-----HcCcccchhh
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK-----LKGREIHVKS  226 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  226 (349)
                      ...++..+...|+++.|..+.+.+.... +.+...|..++.+|...|+...|.++|+.+.     +.|+.|+..+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3445555555666666666666655543 4455556666666666666666666665543     2355555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.05  E-value=0.0035  Score=39.45  Aligned_cols=52  Identities=13%  Similarity=0.074  Sum_probs=20.5

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      |.+.+++++|+++++.+...+.. +...+.....++.+.|++++|...++...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33444444444444444433211 23333333344444444444444444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.98  E-value=0.17  Score=42.33  Aligned_cols=293  Identities=15%  Similarity=0.076  Sum_probs=176.8

Q ss_pred             HHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhcCCCCCccHHH--HHH
Q 018924           16 YNSMLKLYYK--TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYA--DASDHEGIDKILTMMEADPNVALDWVI--YAT   89 (349)
Q Consensus        16 ~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~   89 (349)
                      |.+|-.++..  .|+-..|.++-.+..+. +.-|......++.+-.  -.|+.+.|.+-|+.|. .  . |....  ...
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~--d-PEtRllGLRg  159 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-D--D-PETRLLGLRG  159 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-c--C-hHHHHHhHHH
Confidence            4455555543  46666676665554322 3345555555655433  4799999999999998 2  2 33222  233


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-H-HHhhccCChhh--HHHHHHHHh
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-L-YKKAVKVLNNG--YRNVISSLL  165 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~--~~~li~~~~  165 (349)
                      |.-.--+.|..+.|.+.-++.-..  -|.....+...+...+..|+|+.|+++++ . ...-+.++..-  -..|+.+-.
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA  237 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA  237 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            444445678888888888877653  45555789999999999999999999999 3 33334455421  222332221


Q ss_pred             ---ccCCHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          166 ---KLDDLESAEKIFEEWESQALCYDTRI-PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       166 ---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                         -..+...|...-.+..+  +.||..- -..-..++.+.|++.++-.+++.+-+..+.|+.  +.  +..+.+.|+  
T Consensus       238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--  309 (531)
T COG3898         238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--  309 (531)
T ss_pred             HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--
Confidence               12345556655555544  4555332 223456788899999999999999886644443  32  233445554  


Q ss_pred             HHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh--hhhhcC--cchHH
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL--DNVQNG--KSNLE  316 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~g--~~a~~  316 (349)
                      .+..-+++....    ..++|| ..+...+..+-...|++..|..--+...+. -|....|..+.  .-...|  .++..
T Consensus       310 ta~dRlkRa~~L----~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pres~~lLlAdIeeAetGDqg~vR~  384 (531)
T COG3898         310 TALDRLKRAKKL----ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-APRESAYLLLADIEEAETGDQGKVRQ  384 (531)
T ss_pred             cHHHHHHHHHHH----HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-CchhhHHHHHHHHHhhccCchHHHHH
Confidence            344444444433    255664 566667777778888888887766555443 23444454444  334445  56777


Q ss_pred             HHHHHHhCCCCC
Q 018924          317 TLRELYGNSLAG  328 (349)
Q Consensus       317 ~~~~m~~~~~~p  328 (349)
                      .+.+-.+.--.|
T Consensus       385 wlAqav~APrdP  396 (531)
T COG3898         385 WLAQAVKAPRDP  396 (531)
T ss_pred             HHHHHhcCCCCC
Confidence            777666553344

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.045  Score=45.94  Aligned_cols=261  Identities=12%  Similarity=-0.052  Sum_probs=119.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG   98 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   98 (349)
                      .-..+.+..++.+|+..+...++..+. +..-|..-+..+...|+++++.--.++-. +... -....+.-.-.++...+
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~-r~kd-~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV-RLKD-GFSKGQLREGQCHLALS  131 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe-ecCC-CccccccchhhhhhhhH
Confidence            334455556666677777666665433 34455555556666666666654444333 1111 01113334445555555


Q ss_pred             cHHHHHHHHHHHHHh---------------hcCCcchhhHHHH-HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           99 LLDKALAMLKKSEEQ---------------IKGAKVNSAYNVI-LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~---------------~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      +..+|.+.++.-...               ...++.-..|..+ ..++...|++++|.++---...-...  ..+...++
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vr  209 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVR  209 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhc
Confidence            555666555522100               0000000111111 12334455555555443311111111  12222222


Q ss_pred             --HHhccCCHHHHHHHHHHHHhcCCCCCcchHHH---HHHH----------HHhcCcHHHHHHHHHHHHHc---Ccccch
Q 018924          163 --SLLKLDDLESAEKIFEEWESQALCYDTRIPNF---LIDV----------YCRNGLLEKAENLVNHEKLK---GREIHV  224 (349)
Q Consensus       163 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~----------~~~~~~~~~a~~~~~~~~~~---~~~~~~  224 (349)
                        ++...++.+.|..-|++.++.  .|+...-..   ....          ..+.|++..|.+.|.+.+..   +..|+.
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             ccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence              223455666666666665553  233222111   1111          23456666666666666652   233444


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ..|........+.|+..+|+.--+..+       .+.|. ...+..-..++.-.++|++|.+-++...+.
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al-------~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEAL-------KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhh-------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455555566666677777766666655       22221 111222223444556666666666655544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.94  E-value=0.0062  Score=38.89  Aligned_cols=62  Identities=21%  Similarity=0.189  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHc----Cc-ccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLK----GR-EIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +++.+...|...|++++|...|++..+.    |. .|+ ..++..+...|...|++++|++++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566666677777777777777665532    11 122 44566677777777777777777777654

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.86  E-value=0.068  Score=45.48  Aligned_cols=130  Identities=14%  Similarity=0.011  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHH-HHHhh-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKA-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV  198 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  198 (349)
                      .+|...++...+..-.+.|..+|- ....+ +.++...+++++..++ .|+...|..+|+.-... ++.+..--+..+..
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f  475 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF  475 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence            366666666666666666666666 33333 3455566666666444 35556666666554332 12222223445555


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          199 YCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       199 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      +.+.++-+.|..+|+....+ +..+  ...|..+|.--..-|+...+..+=+.+...
T Consensus       476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            56666666666666633321 1111  335666666555666666666555555554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.23  Score=44.81  Aligned_cols=92  Identities=8%  Similarity=0.001  Sum_probs=57.5

Q ss_pred             hccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhH-
Q 018924          149 AVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSW-  227 (349)
Q Consensus       149 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-  227 (349)
                      .++.+....-.+..++.+.|.-++|.+.+-+-   + .|.     .-+.+|...+++.+|.++-++..-    |.+.+. 
T Consensus       847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tli  913 (1189)
T KOG2041|consen  847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLI  913 (1189)
T ss_pred             hcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHH
Confidence            45556666777888888888888887776432   1 222     355677777888888777654332    222211 


Q ss_pred             -------------HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          228 -------------YYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       228 -------------~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                                   .--|..+.+.|++-+|.+++.+|.+.
T Consensus       914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~  952 (1189)
T KOG2041|consen  914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER  952 (1189)
T ss_pred             HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence                         11234456677777777777777765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.84  E-value=0.15  Score=39.60  Aligned_cols=77  Identities=10%  Similarity=0.055  Sum_probs=46.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchh---HH
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL---QD  302 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~  302 (349)
                      .+..++.-|-......+|...+..+.+.        .- ..-..+..-|.+.|.+..|..-++.+.+.-|.+...   ..
T Consensus       112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~--------la-~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~  182 (203)
T PF13525_consen  112 EFEELIKRYPNSEYAEEAKKRLAELRNR--------LA-EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA  182 (203)
T ss_dssp             HHHHHHHH-TTSTTHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHCcCchHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence            3444555555555666666655555432        01 111235677899999999999999999886644433   44


Q ss_pred             HHh-hhhhcC
Q 018924          303 KLL-DNVQNG  311 (349)
Q Consensus       303 ~l~-~~~~~g  311 (349)
                      .++ +|.+.|
T Consensus       183 ~l~~~y~~l~  192 (203)
T PF13525_consen  183 RLAEAYYKLG  192 (203)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            455 777777

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.82  E-value=0.23  Score=41.40  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  234 (349)
                      .+.+..|.-+...|+...|.++..+..    .|+...|..-+.+++..++|++-..+...      +-++..|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            456667777888899888888866652    57888899999999999999988776432      13567899999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  289 (349)
                      .+.|+..+|..+..++.           +    ..-+..|.+.|++.+|.+.-.+
T Consensus       248 ~~~~~~~eA~~yI~k~~-----------~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKIP-----------D----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHCCCHHHHHHHHHhCC-----------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999988877632           1    3445667788888888765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.26  Score=41.59  Aligned_cols=195  Identities=13%  Similarity=-0.022  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhc---------------CCCCCccHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHh
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEA---------------DPNVALDWVIYATV-GNGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      .+.-.-+++...++..+|...++.-..               ...-+|...+|-.| ..++.-.|+.++|.++--...+.
T Consensus       119 ~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl  198 (486)
T KOG0550|consen  119 GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL  198 (486)
T ss_pred             cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence            445556666666777777766653210               00111333444333 45667778888888877666552


Q ss_pred             hcCCcchhhHHHHHHH--HhhcCCHHHHHHHHHHHHhhccCChhh-------------HHHHHHHHhccCCHHHHHHHHH
Q 018924          114 IKGAKVNSAYNVILTL--YGKYGKKDDVLRIWELYKKAVKVLNNG-------------YRNVISSLLKLDDLESAEKIFE  178 (349)
Q Consensus       114 ~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~~~~~~a~~~~~  178 (349)
                        .+..  .+...+++  +.-.++.+.+...|+. .....|+...             +..-..-..+.|++..|.+.|.
T Consensus       199 --d~~n--~~al~vrg~~~yy~~~~~ka~~hf~q-al~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt  273 (486)
T KOG0550|consen  199 --DATN--AEALYVRGLCLYYNDNADKAINHFQQ-ALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT  273 (486)
T ss_pred             --ccch--hHHHHhcccccccccchHHHHHHHhh-hhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence              3333  44444443  4456777888888772 2223344322             1122334457788889999998


Q ss_pred             HHHhc---CCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh---HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          179 EWESQ---ALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS---WYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       179 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +.+..   +..++...|.....+..+.|+..+|..--+...+    .|...   |..-..++...++|++|.+-|++..+
T Consensus       274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88763   2344555566666777788999999888887777    33332   22223345556788888888888876


Q ss_pred             H
Q 018924          253 A  253 (349)
Q Consensus       253 ~  253 (349)
                      .
T Consensus       350 ~  350 (486)
T KOG0550|consen  350 L  350 (486)
T ss_pred             h
Confidence            5

>PRK15331 chaperone protein SicA; Provisional

Probab=96.77  E-value=0.025  Score=41.33  Aligned_cols=84  Identities=15%  Similarity=0.070  Sum_probs=41.7

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE  245 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  245 (349)
                      ..|++++|..+|.-+...+ ..+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence            4555555555555554432 223333444555555555555555555544433221 33334444555555555555555


Q ss_pred             HHHHHH
Q 018924          246 AMKKVL  251 (349)
Q Consensus       246 ~~~~~~  251 (349)
                      .|....
T Consensus       127 ~f~~a~  132 (165)
T PRK15331        127 CFELVN  132 (165)
T ss_pred             HHHHHH
Confidence            555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.74  E-value=0.29  Score=41.44  Aligned_cols=172  Identities=16%  Similarity=-0.026  Sum_probs=106.0

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHH-HHHhh---ccCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWE-LYKKA---VKVLNNGYRNVISSLLK---LDDLESAEKIFEEWESQALCYDTRIPNF  194 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (349)
                      +...++-+|-...+++..+++++ +....   +.-....-.....++.+   .|+.++|..++..+......++..++..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            34455556899999999999999 33221   11222233345556667   8999999999999666656788888888


Q ss_pred             HHHHHHh---------cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC-HHH---HHHHH---HHHH-HHhccc
Q 018924          195 LIDVYCR---------NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ-IHK---AVEAM---KKVL-AAYQTL  257 (349)
Q Consensus       195 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~---a~~~~---~~~~-~~~~~~  257 (349)
                      +...|-.         ....++|...|.+.-+..  ||..+--.++..+...|. .+.   ..++-   .... +.  ..
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k--g~  298 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK--GS  298 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh--cc
Confidence            7777643         124678888887766532  444332222222222332 222   22222   1111 11  11


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          258 VKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       258 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      ..-..+-..+..++.++.-.|+.++|.+..+.|.+..+|.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            1223466677888999999999999999999999876554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.71  E-value=0.3  Score=43.72  Aligned_cols=216  Identities=14%  Similarity=0.137  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH-----
Q 018924           16 YNSMLKLYYKTGNF--EKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA-----   88 (349)
Q Consensus        16 ~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----   88 (349)
                      ++..=.+|.+-++.  -+.+.-+++++++|-.|+...   +...|+-.|.+.+|-++|.+-- ..+-  -...|+     
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G-~enR--AlEmyTDlRMF  674 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSG-HENR--ALEMYTDLRMF  674 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcC-chhh--HHHHHHHHHHH
Confidence            44444555554443  344455667788888888754   4456677888888888886543 1111  111111     


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH------H-HHhhcc---CChhh
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE------L-YKKAVK---VLNNG  156 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~-~~~~~~---~~~~~  156 (349)
                      -+..-+...|..++-..+.++-.+.  ....+     .+....+...|+.++|..+.-      + ..-+.+   .+..+
T Consensus       675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~  749 (1081)
T KOG1538|consen  675 DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP  749 (1081)
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence            1233344444444433333322111  11111     234455667788888877642      1 111112   33345


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh-----------
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK-----------  225 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------  225 (349)
                      ...+...+.+...+..|-++|..|-.         ...+++.....+++.+|+.+-++..+  ..||+.           
T Consensus       750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D  818 (1081)
T KOG1538|consen  750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND  818 (1081)
T ss_pred             HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence            55555666677788888889887743         23467777888999999999888776  334432           


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      -|.-.-.+|.+.|+-.+|.+++++....
T Consensus       819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  819 RFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            1333446788888888888888887654

>PRK15331 chaperone protein SicA; Provisional

Probab=96.69  E-value=0.035  Score=40.58  Aligned_cols=90  Identities=10%  Similarity=-0.072  Sum_probs=48.7

Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      ..-+...|++++|..+|+-+..-+  |-...-|..|..++-..+++++|+..|.+...-.+-|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            334445666666666666655432  222234555666666666666666666632222233444444555566666666


Q ss_pred             HHHHHHHHHHHh
Q 018924          171 ESAEKIFEEWES  182 (349)
Q Consensus       171 ~~a~~~~~~~~~  182 (349)
                      +.|...|....+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            666666665554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.076  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=16.8

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      -.+.|.+.|++..|...|++...
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~  236 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVS  236 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHH
Confidence            34567788888888888877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.53  E-value=0.047  Score=46.82  Aligned_cols=61  Identities=13%  Similarity=-0.099  Sum_probs=32.3

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      ..++.+..+|.+.|++++|...|++.++.  .|+.    ..|..+..+|...|++++|...+++..+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555555555555555555555553  2332    1245555555555555555555555554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.53  E-value=0.027  Score=44.72  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             CccHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 018924           10 ARTTVVYNSMLKLYYKT-----GNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADA----------------SDHEGID   68 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~   68 (349)
                      +.|-.+|-+.+..+.+.     +.++=....+..|.+-|+.-|..+|+.|++.+-+.                .+-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            44666776666666543     44555556667777778888888888887765432                1223456


Q ss_pred             HHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           69 KILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      +++++|. ..|+.||..+-..|++++.+.+.
T Consensus       144 ~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQME-WHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHH-HcCCCCchHHHHHHHHHhccccc
Confidence            6677776 66777777666667777666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.51  E-value=0.21  Score=41.42  Aligned_cols=129  Identities=13%  Similarity=0.000  Sum_probs=57.7

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHH--HHHhhccCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhc--CCC-CCcc-hH
Q 018924          123 YNVILTLYGKYGKKDDVLRIWE--LYKKAVKVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQ--ALC-YDTR-IP  192 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~-~~  192 (349)
                      ..++..++...+.++.+++.|+  +.-.....|    ...|..+.+.|.+..++++|.-+..+..+.  .+. .|.. -|
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky  204 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY  204 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence            3345555555566666666666  221111111    134556666666666666665555444321  111 0111 11


Q ss_pred             -----HHHHHHHHhcCcHHHHHHHHHHHHH----cCccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          193 -----NFLIDVYCRNGLLEKAENLVNHEKL----KGREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       193 -----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                           ..+.-++...|++-.|.+.-++..+    .|-++ .......+...|-..|+.+.|+.-|+.+.
T Consensus       205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence                 1123344455555555555554432    22111 11223344455555666666555555554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.50  E-value=0.4  Score=41.39  Aligned_cols=64  Identities=9%  Similarity=0.016  Sum_probs=54.7

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      +.+...|+.+..+|.+.|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|+..+++..
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346788999999999999999999999998886  4553    358889999999999999999999987

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.49  E-value=0.34  Score=43.06  Aligned_cols=163  Identities=13%  Similarity=-0.036  Sum_probs=82.4

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhh-cCCcch----hhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhH-H
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQI-KGAKVN----SAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGY-R  158 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~-~  158 (349)
                      .++....-.|+-+.+++.+.+..+.+ +..+..    -.|+..+..++.    ..+.+.|.++++...... |+...| -
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~  271 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF  271 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            35666666666666666666554421 111110    134445544443    234556666666333333 333333 2


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcC--C-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-H
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQA--L-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-Y  234 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~  234 (349)
                      .-.+.+...|++++|.+.|+......  . +.....+--+.-.+.-..++++|...|..+.+.+- -+...|..+..+ +
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence            33345556677777777776544211  0 11222344455566667777777777777776432 123333333322 3


Q ss_pred             hcCCCH-------HHHHHHHHHHHHH
Q 018924          235 RQNSQI-------HKAVEAMKKVLAA  253 (349)
Q Consensus       235 ~~~~~~-------~~a~~~~~~~~~~  253 (349)
                      ...|+.       ++|.++|.++...
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHHH
Confidence            345555       6777777776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.073  Score=42.28  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT--YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYATV   90 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l   90 (349)
                      ..|+.-+.. .+.|++..|...|...++....  -....+-.|..++...|+++.|..+|..+.++.+-.|. ....--|
T Consensus       143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            367776664 4566788888888888876321  12345666788888888888888888877633332232 3556667


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHh
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      ..+..+.|+.++|..+|+++.+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            77888888888888888888775

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.12  Score=43.46  Aligned_cols=126  Identities=11%  Similarity=-0.067  Sum_probs=83.4

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhcc---------------CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc
Q 018924          125 VILTLYGKYGKKDDVLRIWELYKKAVK---------------VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT  189 (349)
Q Consensus       125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  189 (349)
                      .-.+.|.+.|++..|...|++...-+.               .-..++..+..++.+.+++..|.+.....+..+ ++|.
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~  291 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV  291 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence            344567788888888888773222111               122357778888889999999999988888865 5566


Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh-cCCC-HHHHHHHHHHHHHH
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR-QNSQ-IHKAVEAMKKVLAA  253 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~-~~~a~~~~~~~~~~  253 (349)
                      -....=..+|...|+++.|+..|+++.+..  |+....+.=+..|. +... .+...++|..|...
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            555566778888899999999999988844  55444443333333 3333 33446777777754

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.33  E-value=0.51  Score=39.44  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA  269 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  269 (349)
                      .+.+..+.-+...|+...|.++-.+..-    |+...|...+.+++..++|++-.++...         .-  .+.-|..
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s---------kK--sPIGyep  242 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS---------KK--SPIGYEP  242 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---------CC--CCCChHH
Confidence            3555667777888999888888666543    7999999999999999999987775432         22  3477888


Q ss_pred             HHHHHHhcCChhhHHHHHHH
Q 018924          270 CLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       270 ll~~~~~~g~~~~a~~~~~~  289 (349)
                      ++.+|.+.|...+|..+...
T Consensus       243 Fv~~~~~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  243 FVEACLKYGNKKEASKYIPK  262 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHh
Confidence            99999999999999998877

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.32  E-value=0.29  Score=43.50  Aligned_cols=161  Identities=20%  Similarity=0.121  Sum_probs=98.6

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHh--hccCC-----hhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchH
Q 018924          124 NVILTLYGKYGKKDDVLRIWELYKK--AVKVL-----NNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIP  192 (349)
Q Consensus       124 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  192 (349)
                      ..+++...-.||-+.+++.+.....  ++.-.     ...|..++..++.    ..+.+.|.+++..+.+.  -|+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            3444455566888888888773222  11111     1235555554443    34678899999988875  4666555


Q ss_pred             HH-HHHHHHhcCcHHHHHHHHHHHHHcC---cccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHH
Q 018924          193 NF-LIDVYCRNGLLEKAENLVNHEKLKG---REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA  268 (349)
Q Consensus       193 ~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  268 (349)
                      .. -.+.+...|++++|.+.|++.....   .+.....+--+...+.-.++|++|.+.|..+.+.      -.-...+|.
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~  343 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYA  343 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHH
Confidence            43 3345666899999999998655311   1122334455666778889999999999999864      122344444


Q ss_pred             HHHHH-HHhcCCh-------hhHHHHHHHHhh
Q 018924          269 ACLDY-FKDEGDI-------GGAENFIELLND  292 (349)
Q Consensus       269 ~ll~~-~~~~g~~-------~~a~~~~~~~~~  292 (349)
                      .+..+ +...|+.       ++|.++|.+...
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            44433 3456777       778887776643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.26  Score=40.45  Aligned_cols=152  Identities=9%  Similarity=0.046  Sum_probs=104.8

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC--CCCccHHHHHHHHHHHhhcCcHHH
Q 018924           25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP--NVALDWVIYATVGNGYGKVGLLDK  102 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~  102 (349)
                      -+|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.....++++....  +++-....-..+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            457777888888888875 45577788888889999999988888888876232  222222222455667778999999


Q ss_pred             HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc----CChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924          103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK----VLNNGYRNVISSLLKLDDLESAEKIFE  178 (349)
Q Consensus       103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~  178 (349)
                      |++.-++..+-  .+....+-.+....+-..|++.++.++.......-.    .-.+-|-...-.+...+.++.|+++|+
T Consensus       194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            99999888763  344435667788888889999999988762111111    111223344455667799999999997


Q ss_pred             H
Q 018924          179 E  179 (349)
Q Consensus       179 ~  179 (349)
                      .
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            5

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.86  Score=41.67  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  234 (349)
                      .+.+-.+.-+...|+..+|.++-.+.+    -||...|-.=+.+++..+++++-+++-+...      .+.-|..++.+|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c  754 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC  754 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence            344445555566666666666655542    4555666666666666666665555433222      244566666666


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  287 (349)
                      .+.|+.++|..++-+.-       +..       -...+|.+.|++.+|.++-
T Consensus       755 ~~~~n~~EA~KYiprv~-------~l~-------ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVG-------GLQ-------EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HhcccHHHHhhhhhccC-------ChH-------HHHHHHHHhccHHHHHHHH
Confidence            66666666666665442       111       3345566666666665543

>PRK11906 transcriptional regulator; Provisional

Probab=96.28  E-value=0.37  Score=41.66  Aligned_cols=145  Identities=12%  Similarity=-0.048  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHh-cCCCCC-cchHHHHHHHHHh---------cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          169 DLESAEKIFEEWES-QALCYD-TRIPNFLIDVYCR---------NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       169 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      ..+.|..+|.+... ....|+ ...|..+..++..         .....+|.+.-++..+.+.. |......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence            35678888888872 223444 3334443333322         23355677777777776654 777777777777778


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-C-chhHHHHh-hhhhcC-c
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDKGFI-P-TDLQDKLL-DNVQNG-K  312 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l~-~~~~~g-~  312 (349)
                      ++++.|..+|+++.       .+.||. .+|......+.-.|+.++|.+.+++..+..|. - .......+ .|+..+ +
T Consensus       352 ~~~~~a~~~f~rA~-------~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~  424 (458)
T PRK11906        352 GQAKVSHILFEQAK-------IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLK  424 (458)
T ss_pred             cchhhHHHHHHHHh-------hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchh
Confidence            88999999999998       558864 44444445566789999999999998887662 2 22344445 888889 9


Q ss_pred             chHHHHHHH
Q 018924          313 SNLETLREL  321 (349)
Q Consensus       313 ~a~~~~~~m  321 (349)
                      .|+.++-+-
T Consensus       425 ~~~~~~~~~  433 (458)
T PRK11906        425 NNIKLYYKE  433 (458)
T ss_pred             hhHHHHhhc
Confidence            999887543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.53  Score=38.06  Aligned_cols=144  Identities=11%  Similarity=0.008  Sum_probs=58.1

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH
Q 018924           58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD  137 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  137 (349)
                      ....|++.+|...|.... .... -+...-..++.+|...|+.+.|..++..+...-..... .....-|..+.+.....
T Consensus       144 ~~~~e~~~~a~~~~~~al-~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         144 LIEAEDFGEAAPLLKQAL-QAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA-HGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhccchhhHHHHHHHHH-HhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH-HHHHHHHHHHHHHhcCC
Confidence            344555555555555544 2121 11223334555555555555555555554332111111 11111222233332222


Q ss_pred             HHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcH
Q 018924          138 DVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLL  205 (349)
Q Consensus       138 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~  205 (349)
                      +...+-+ .....+-|...-..+...+...|+.+.|.+.+-.+.++. -.-|...-..|+..+.-.|.-
T Consensus       221 ~~~~l~~-~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~  288 (304)
T COG3118         221 EIQDLQR-RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA  288 (304)
T ss_pred             CHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence            2222222 111222233344445555555566655555544443321 122333444555555555533

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.15  E-value=0.073  Score=42.43  Aligned_cols=105  Identities=10%  Similarity=0.040  Sum_probs=57.5

Q ss_pred             cCChhhHHHHHHHHh-----ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh
Q 018924          151 KVLNNGYRNVISSLL-----KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK  225 (349)
Q Consensus       151 ~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  225 (349)
                      ..|..+|...+..+.     +.++++-....++.|.+.|+..|..+|+.|+..+-+..                +.|.. 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence            345555666665554     23455555566666666666666666666665543221                11111 


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD  279 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~  279 (349)
                      .+....-.|-  .+-+-++.++++|...     |+.||..+-..|++++.+.+-
T Consensus       127 vfQ~~F~HYP--~QQ~C~I~vLeqME~h-----GVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  127 VFQKVFLHYP--QQQNCAIKVLEQMEWH-----GVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHhhCc--hhhhHHHHHHHHHHHc-----CCCCchHHHHHHHHHhccccc
Confidence            1111111121  1234467777777776     777777777777777766554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.12  E-value=0.77  Score=39.46  Aligned_cols=130  Identities=14%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhh-HHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQA-LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKS-WYYLAT  232 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~  232 (349)
                      ..|...+.+-.+..-.+.|..+|-+..+.+ +.+++.++++++..++ .|+...|..+|+--...-  ||... -+..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence            456777777777777788888888887777 5677777787777665 466777777777544422  34333 344555


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      -+...++-+.|..+|+..+.      .+..+  ...|..+|..=+.-|+...+..+=+++...
T Consensus       475 fLi~inde~naraLFetsv~------r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         475 FLIRINDEENARALFETSVE------RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHH------HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            66677777788888876664      33333  456777777777777777666666555554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.06  E-value=0.1  Score=42.10  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=68.4

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA  269 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  269 (349)
                      .++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+......|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            45677888888889999999999999887654 77889999999999999999999999988866667788888877766


Q ss_pred             HHHH
Q 018924          270 CLDY  273 (349)
Q Consensus       270 ll~~  273 (349)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.01  E-value=0.51  Score=41.40  Aligned_cols=130  Identities=13%  Similarity=0.003  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL  129 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (349)
                      ..+.++.-+-+.|-.+.|+++...-.             .-.....+.|+++.|.++.++.      .+. ..|..|...
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~------~~~-~~W~~Lg~~  356 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL------DDP-EKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC------STH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc------CcH-HHHHHHHHH
Confidence            34555555555555555554432211             1233445556665555554432      122 456666666


Q ss_pred             HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHH
Q 018924          130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE  209 (349)
Q Consensus       130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  209 (349)
                      ....|+++-|.+.|+..        .-|..++-.|.-.|+.+...++.+.....|      -+|....++.-.|++++..
T Consensus       357 AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred             HHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence            66666666666555511        114444445555555555555555444443      1333333444445555555


Q ss_pred             HHHH
Q 018924          210 NLVN  213 (349)
Q Consensus       210 ~~~~  213 (349)
                      +++.
T Consensus       423 ~lL~  426 (443)
T PF04053_consen  423 DLLI  426 (443)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.98  E-value=0.38  Score=34.72  Aligned_cols=85  Identities=16%  Similarity=0.104  Sum_probs=43.5

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      ..++..+...+.......+++.+...+ ..+...++.++..|++.+ .++....+..  .    .+......++..|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence            345555555556666666666665554 245555666666665543 2222233221  1    2233334455556666


Q ss_pred             CCHHHHHHHHHHH
Q 018924          238 SQIHKAVEAMKKV  250 (349)
Q Consensus       238 ~~~~~a~~~~~~~  250 (349)
                      +.++++..++.++
T Consensus        83 ~l~~~~~~l~~k~   95 (140)
T smart00299       83 KLYEEAVELYKKD   95 (140)
T ss_pred             CcHHHHHHHHHhh
Confidence            6666666666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.97  E-value=0.73  Score=37.85  Aligned_cols=165  Identities=16%  Similarity=0.032  Sum_probs=88.2

Q ss_pred             hHHHHHHHHhhcCCHHHH---HHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDV---LRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV  198 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  198 (349)
                      +...++.+|...+..+..   ..+++......+-.+.++..-+..+.+.++.+.+.+++..|...- ......+...+..
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~  164 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH  164 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence            466677777777765544   444443333333334556667777777888888888888888752 2233445555555


Q ss_pred             HHh--cCcHHHHHHHHHHHHHcCcccchh-hHHHHH-H---HHhcCC------CHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924          199 YCR--NGLLEKAENLVNHEKLKGREIHVK-SWYYLA-T---GYRQNS------QIHKAVEAMKKVLAAYQTLVKWKPSVE  265 (349)
Q Consensus       199 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li-~---~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~p~~~  265 (349)
                      +..  ......|...++.+....+.|... ....++ .   ...+.+      +.+...+++....+.    .+.+.+..
T Consensus       165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~----~~~~ls~~  240 (278)
T PF08631_consen  165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS----LGKQLSAE  240 (278)
T ss_pred             HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH----hcCCCCHH
Confidence            422  223445666666665544444443 111111 1   111211      244555555544333    13333444


Q ss_pred             HHHHHHH-------HHHhcCChhhHHHHHHHHh
Q 018924          266 SLAACLD-------YFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       266 ~~~~ll~-------~~~~~g~~~~a~~~~~~~~  291 (349)
                      +-..+..       .+.+.++++.|.+.++-..
T Consensus       241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            4333332       3567889999999987543

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.2  Score=39.91  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESL  267 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~  267 (349)
                      .|+.-+.. .+.|++..|...|...++..+.  -....+-.|..++...|++++|...|..+.+.++    -.| -+..+
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~KApdal  218 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPKAPDAL  218 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCCChHHH
Confidence            35544433 3455677777777666665422  0122334466667777777777777777665411    111 23445


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          268 AACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       268 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      --|..+..+.|+.++|..+|+++.+..|
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            5555566667777777777777666644

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.91  E-value=0.38  Score=34.45  Aligned_cols=75  Identities=16%  Similarity=0.084  Sum_probs=43.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      .....+.|++++|.+.|+.+..+-.  +-....--.++.+|.+.+++++|...++++. +.........|...+.+++
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi-rLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI-RLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCCCccHHHHHHHHH
Confidence            3445567777777777777776521  1123355566777777777777777777776 3333222233444444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.87  E-value=0.025  Score=31.32  Aligned_cols=35  Identities=11%  Similarity=-0.020  Sum_probs=16.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ  301 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  301 (349)
                      +..+...|.+.|++++|+++++++.+..|.+...|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~   38 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAW   38 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            33444445555555555555555555444444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.76  E-value=0.97  Score=37.72  Aligned_cols=203  Identities=13%  Similarity=0.076  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEEN--GITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WV   85 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~   85 (349)
                      .+|..+..+.++.|.+++++..--.-++.  ...-.   -..|..+.+++-+.-++.+++.+-..-..-+|..|.   ..
T Consensus        44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq  123 (518)
T KOG1941|consen   44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ  123 (518)
T ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence            34555666666667666654432111110  00101   124455555555555666666555443322333331   12


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-----CcchhhHHHHHHHHhhcCCHHHHHHHHHH---HHhhcc-CCh-h
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKG-----AKVNSAYNVILTLYGKYGKKDDVLRIWEL---YKKAVK-VLN-N  155 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~-~~~-~  155 (349)
                      ...++..++.-.+.++++++.|+...+-...     ... .++-.|.+.|....|+++|.-+...   ....+. .|. .
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl-qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL-QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee-ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            3345777788888999999999887653222     222 4788999999999999999877662   222333 222 2


Q ss_pred             hHHH-----HHHHHhccCCHHHHHHHHHHHHh----cCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          156 GYRN-----VISSLLKLDDLESAEKIFEEWES----QALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       156 ~~~~-----li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      -|..     +.-++-..|....|.+..++..+    .|-.+ -....-.+.+.|...|+.+.|+.-|+....
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            3433     33455678888888888887654    33221 122344677889999999999888877655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.74  E-value=0.41  Score=42.00  Aligned_cols=133  Identities=15%  Similarity=0.178  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ....+.+++.+-+.|.++.|+++-..-.            .-.....+.|+++.|.++.++.       .+...|..|..
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~  355 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGD  355 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHH
Confidence            3447778888888888888887754322            2344566889999887664433       46679999999


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      ...+.|+++-|++.|.+.          .-|..|+-.|.-.|+.+...++.+.......     ++....++.-.|+.++
T Consensus       356 ~AL~~g~~~lAe~c~~k~----------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~  420 (443)
T PF04053_consen  356 EALRQGNIELAEECYQKA----------KDFSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEE  420 (443)
T ss_dssp             HHHHTTBHHHHHHHHHHC----------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHH
T ss_pred             HHHHcCCHHHHHHHHHhh----------cCccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHH
Confidence            999999999999999884          2467788888889998777777763332222     5566666667788887


Q ss_pred             HHHHHHH
Q 018924          173 AEKIFEE  179 (349)
Q Consensus       173 a~~~~~~  179 (349)
                      ..+++.+
T Consensus       421 cv~lL~~  427 (443)
T PF04053_consen  421 CVDLLIE  427 (443)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=1.7  Score=39.97  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL  267 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  267 (349)
                      ..-+.+--+.-+...|+..+|.++-.+.+-    ||-..|-.-+.+++..++|++-+++-+...           .+.-|
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk-----------sPIGy  747 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK-----------SPIGY  747 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC-----------CCCCc
Confidence            334555566677778888888887766654    788888888999999999988777665542           13556


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          268 AACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       268 ~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .-.+.+|.+.|+.++|..++.++..
T Consensus       748 ~PFVe~c~~~~n~~EA~KYiprv~~  772 (829)
T KOG2280|consen  748 LPFVEACLKQGNKDEAKKYIPRVGG  772 (829)
T ss_pred             hhHHHHHHhcccHHHHhhhhhccCC
Confidence            6778889999999999988876643

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.70  E-value=1.1  Score=37.84  Aligned_cols=249  Identities=14%  Similarity=0.035  Sum_probs=159.4

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           24 YKTGNFEKLDSLMHEMEENGITYDRYTYC----TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      .-.|+++.|.+-|+-|..     |+.|-.    .|.-..-+.|+.+.|...-+..- ..-. .-.-.+...+...|..|+
T Consensus       131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa-~~Ap-~l~WA~~AtLe~r~~~gd  203 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAA-EKAP-QLPWAARATLEARCAAGD  203 (531)
T ss_pred             HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH-hhcc-CCchHHHHHHHHHHhcCC
Confidence            347999999999999986     333332    23333346789998888887775 3222 223445678899999999


Q ss_pred             HHHHHHHHHHHHHhhcC-Ccch-hhHHHHHHHHh--h-cCCHHHHHHHHHHHHhhccCChhh-HHHHHHHHhccCCHHHH
Q 018924          100 LDKALAMLKKSEEQIKG-AKVN-SAYNVILTLYG--K-YGKKDDVLRIWELYKKAVKVLNNG-YRNVISSLLKLDDLESA  173 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~-~~~~-~~~~~l~~~~~--~-~~~~~~a~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a  173 (349)
                      ++.|+++++.-++..+. ++.. ..-..|+.+-.  . ..+...|...-. ...++.||..- -.....++.+.|+..++
T Consensus       204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~-~a~KL~pdlvPaav~AAralf~d~~~rKg  282 (531)
T COG3898         204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL-EANKLAPDLVPAAVVAARALFRDGNLRKG  282 (531)
T ss_pred             hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH-HHhhcCCccchHHHHHHHHHHhccchhhh
Confidence            99999999987664332 2221 11222332211  1 223444443332 34455566543 33445788899999999


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-cCccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-KGREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      -.+++.+-+....|+  ++  ++..+.+.|+.  +..-+++..+ ...+| +..+-..+..+-...|++..|..--+...
T Consensus       283 ~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         283 SKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             hhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            999999998754444  33  23334455553  3333333322 11223 45566677788888999999888777776


Q ss_pred             HHhcccccCCCCHHHHHHHHHHH-HhcCChhhHHHHHHHHhhC
Q 018924          252 AAYQTLVKWKPSVESLAACLDYF-KDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       252 ~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~  293 (349)
                             ...|....|..|.+.- ...||-.++...+.+..+.
T Consensus       357 -------r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         357 -------REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             -------hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence                   5589888888887764 4559999999999888764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.58  E-value=1.1  Score=36.90  Aligned_cols=225  Identities=14%  Similarity=0.132  Sum_probs=125.7

Q ss_pred             HHhcCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcC-ChHHHHHHHHHhhc-------CCCCCccH--
Q 018924           23 YYKTGNFEKLDSLMHEMEENG--ITYDRY------TYCTRLSAYADAS-DHEGIDKILTMMEA-------DPNVALDW--   84 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~-------~~~~~~~~--   84 (349)
                      ..+.|+.+.|..++.+.....  ..|+..      .|+.-...+ ..+ +++.|..++++...       .....|+.  
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            357899999999999987643  233321      233333333 445 88777666655431       11222332  


Q ss_pred             ---HHHHHHHHHHhhcCcHH---HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhH
Q 018924           85 ---VIYATVGNGYGKVGLLD---KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGY  157 (349)
Q Consensus        85 ---~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~  157 (349)
                         .+...++.+|...+..+   +|.++++.+....+.+.  .++..-+..+.+.++.+.+.+++. |... +......+
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~  158 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchH
Confidence               44567888888877655   56667777766544333  477777788888899999999998 5444 33233345


Q ss_pred             HHHHHHH---hccCCHHHHHHHHHHHHhcCCCCCcc-hHH-HHHHH---HHhcC------cHHHHHHHHHHHHHc-Cccc
Q 018924          158 RNVISSL---LKLDDLESAEKIFEEWESQALCYDTR-IPN-FLIDV---YCRNG------LLEKAENLVNHEKLK-GREI  222 (349)
Q Consensus       158 ~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~l~~~---~~~~~------~~~~a~~~~~~~~~~-~~~~  222 (349)
                      ..++..+   ... ....|...+..+....+.|... ... .++..   ..+.+      +++....+++.+.+. +.+.
T Consensus       159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l  237 (278)
T PF08631_consen  159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL  237 (278)
T ss_pred             HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence            5555544   333 3345666666665544555543 111 11111   11111      145555555543331 2222


Q ss_pred             chhh---HHHH----HHHHhcCCCHHHHHHHHHHHHH
Q 018924          223 HVKS---WYYL----ATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       223 ~~~~---~~~l----i~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +..+   ..++    ...+.+.++++.|.++|+-...
T Consensus       238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            2222   2222    2346678999999999987653

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.54  E-value=0.069  Score=29.55  Aligned_cols=28  Identities=25%  Similarity=0.172  Sum_probs=16.3

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      +..+..+|.+.|++++|.++|++..+..
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4455555666666666666666665544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.54  E-value=0.87  Score=35.59  Aligned_cols=202  Identities=18%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH-H
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS-S  163 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~  163 (349)
                      ..+......+...+.+..+...+.........+.....+......+...+++..+...+.........+......... .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            444455555555566665555555554310112221345555555555555555655555222111111111222222 4


Q ss_pred             HhccCCHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          164 LLKLDDLESAEKIFEEWESQAL--CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      +...|+++.|...+........  ......+......+...++.+.+...+..............+..+...+...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            5566666666666665533110  01112222223334455566666666666555322112344555555566666666


Q ss_pred             HHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      .|...+......       .|+ ...+..+...+...+..+.+...+......
T Consensus       220 ~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         220 EALEYYEKALEL-------DPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHhh-------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666532       333 223333333333445556666555555544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.46  E-value=0.43  Score=33.41  Aligned_cols=53  Identities=17%  Similarity=0.086  Sum_probs=25.6

Q ss_pred             HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      +...|+.+.|++.|.....-.+-....||.-..++.-.|+.++|..-+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34445555555555533333333444455555555555555555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.45  E-value=0.53  Score=33.00  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=53.2

Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH---HHHHHHHHHH
Q 018924          198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV---ESLAACLDYF  274 (349)
Q Consensus       198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~ll~~~  274 (349)
                      ++...|+++.|.+.|.+....-++ ....||.-..++.-+|+.++|++-+++.++.    .|-+ +.   ..|..-...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~-trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQ-TRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCcc-chHHHHHHHHHHHHH
Confidence            345567777777777766654322 5556777777777777777777777776654    1111 11   1222222235


Q ss_pred             HhcCChhhHHHHHHHHhhCC
Q 018924          275 KDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       275 ~~~g~~~~a~~~~~~~~~~~  294 (349)
                      ...|+-+.|+.=|....+.|
T Consensus       126 Rl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhC
Confidence            56677777777776666554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.35  E-value=0.62  Score=32.74  Aligned_cols=65  Identities=11%  Similarity=0.074  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      ......+..+...|+-++-.++++.+.+      .-.|++.....+..+|.+.|+..++.++++++.+.|.
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~k------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKK------NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhh------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3444555666667777777777766653      2356666677777777777777777777777777664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.31  E-value=0.82  Score=33.88  Aligned_cols=122  Identities=15%  Similarity=0.062  Sum_probs=48.4

Q ss_pred             HhcCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh--hHHHHHHHHhhcCC
Q 018924           59 ADASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS--AYNVILTLYGKYGK  135 (349)
Q Consensus        59 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~  135 (349)
                      ++.+..++|+.-|..+. +.|...- ....-.........|+...|...|+++-.....|....  +-..-.-.+...|.
T Consensus        69 A~~~k~d~Alaaf~~le-ktg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLE-KTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            34445555555555554 3333211 11111223344455555555555555544322222200  01111122334455


Q ss_pred             HHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924          136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE  181 (349)
Q Consensus       136 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  181 (349)
                      +++.....+ ....+.+.-...-..|.-+-.+.|++..|.+.|..+.
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            555444444 2222222222223334444445555555555555443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.23  E-value=0.77  Score=33.11  Aligned_cols=85  Identities=16%  Similarity=0.136  Sum_probs=43.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh
Q 018924           17 NSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK   96 (349)
Q Consensus        17 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~   96 (349)
                      ..++..+.+.+.+......++.+...+. .+...++.++..|++.. .++....+..    .   .+.......+..|.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~----~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN----K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh----c---cccCCHHHHHHHHHH
Confidence            3455556666666666666666666552 45556666666666543 2223333331    0   111111225555555


Q ss_pred             cCcHHHHHHHHHHH
Q 018924           97 VGLLDKALAMLKKS  110 (349)
Q Consensus        97 ~g~~~~a~~~~~~~  110 (349)
                      .+.++++.-++.++
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            66666666655554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.17  E-value=0.4  Score=38.81  Aligned_cols=78  Identities=9%  Similarity=0.016  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH-----hhcCCcchhhH
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE-----QIKGAKVNSAY  123 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~  123 (349)
                      .++..++..+...|+++.+...++++. .... -+...|..++.+|.+.|+...|+..|+++.+     .|+.|.. .+.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li-~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~-~~~  230 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLI-ELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP-ELR  230 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHH-hcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH-HHH
Confidence            466777777778888888888888777 5444 6777778888888888888888888877754     4666766 666


Q ss_pred             HHHHHH
Q 018924          124 NVILTL  129 (349)
Q Consensus       124 ~~l~~~  129 (349)
                      ......
T Consensus       231 ~~y~~~  236 (280)
T COG3629         231 ALYEEI  236 (280)
T ss_pred             HHHHHH
Confidence            655555

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=1.3  Score=34.86  Aligned_cols=206  Identities=11%  Similarity=0.036  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..|..-..+|-...++++|...+.+..+. .+.+. ..|+ ...+      ++.|.-+.+ .....+.-...|+-....|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfh-AAKa------yEqaamLak-e~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFH-AAKA------YEQAAMLAK-ELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHH-HHHH------HHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence            33555566777777888777777666542 22222 2222 1111      222222222 0011111123355566667


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cC--cccchhhHHHHHHHHhcCCC
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KG--REIHVKSWYYLATGYRQNSQ  239 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~~~  239 (349)
                      ...|.++.|-..+++.-+.                ....++++|.++|++...   .+  .+.-...+..+-..+.+..+
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            7777777666666554321                123345555555554332   11  01112234455566777778


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCCchhHHHHh-hhhhcC-c
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK----GFIPTDLQDKLL-DNVQNG-K  312 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~-~~~~~g-~  312 (349)
                      +++|-..+.+-...... ..-.|+. ..|...|-.+....|+..|+..++.....    +..+..+...|+ +|-... +
T Consensus       166 f~Eaa~a~lKe~~~~~~-~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADK-CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHH-HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence            88777666553321000 0112222 33555556667778999999999886554    224556788888 887766 5


Q ss_pred             chHHH
Q 018924          313 SNLET  317 (349)
Q Consensus       313 ~a~~~  317 (349)
                      ++.++
T Consensus       245 ~~~kv  249 (308)
T KOG1585|consen  245 EIKKV  249 (308)
T ss_pred             HHHHH
Confidence            44443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.01  E-value=0.89  Score=32.63  Aligned_cols=79  Identities=13%  Similarity=0.040  Sum_probs=58.2

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVA-LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY  133 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  133 (349)
                      .....+.|++++|.+.|+.+..+.... -...+--.|+.+|.+.|++++|...+++.++..+..+. ..|-..+.+++..
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence            334557899999999999987443332 23455567899999999999999999999987766555 6777777766544


Q ss_pred             C
Q 018924          134 G  134 (349)
Q Consensus       134 ~  134 (349)
                      .
T Consensus        96 ~   96 (142)
T PF13512_consen   96 E   96 (142)
T ss_pred             H
Confidence            3

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.44  Score=38.80  Aligned_cols=97  Identities=10%  Similarity=0.066  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQA---LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA  231 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  231 (349)
                      .+...++..-....+++.+...+-+++...   ..|+...+. .++. +-.-+++++..++..=+.-|+-||-.+++.+|
T Consensus        65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~  142 (418)
T KOG4570|consen   65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLM  142 (418)
T ss_pred             eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHH-HHccChHHHHHHHhCcchhccccchhhHHHHH
Confidence            334444444444555666666555554321   122222221 2222 22334556666666555666666666666666


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHH
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ..+.+.+++.+|.++...|...
T Consensus       143 D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  143 DSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHhcccHHHHHHHHHHHHHH
Confidence            6666666666666666655543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.85  E-value=0.49  Score=35.75  Aligned_cols=94  Identities=18%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccch----hhH
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHV----KSW  227 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~----~~~  227 (349)
                      +..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+|......+++..+...+.+...   .+-.++.    ..|
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~  118 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY  118 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            44444455555555555555555444322221  11233344444445555555444443332   1111111    111


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          228 YYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       228 ~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      ..+  .+...+++..|-+.|-....
T Consensus       119 ~gL--~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  119 EGL--ANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHH--HHHHhchHHHHHHHHHccCc
Confidence            111  12345677777777766654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK11906 transcriptional regulator; Provisional

Probab=94.80  E-value=2.5  Score=36.81  Aligned_cols=163  Identities=9%  Similarity=0.012  Sum_probs=94.5

Q ss_pred             HHH--HHHHHHHhhc-----CcHHHHHHHHHHHHH-hhcCCcchhhHHHHHHHHhhc---------CCHHHHHHHHHHHH
Q 018924           85 VIY--ATVGNGYGKV-----GLLDKALAMLKKSEE-QIKGAKVNSAYNVILTLYGKY---------GKKDDVLRIWELYK  147 (349)
Q Consensus        85 ~~~--~~li~~~~~~-----g~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~  147 (349)
                      ..|  ..++.+....     -..+.|..+|.+... +...|+...+|..+..++...         .+..+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  4455554442     235678888888871 124555545665555554322         12233334443333


Q ss_pred             hhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhh
Q 018924          148 KAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKS  226 (349)
Q Consensus       148 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~  226 (349)
                      .-.+.|......+..+..-.++++.|...|+.....+ +....+|........-+|+.++|.+.+++..+..+..- ...
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            4445666677777777777888999999999888753 22344555555556668999999999988776432211 122


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHH
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      ....+..|+.+ ..+.|+.+|-+
T Consensus       411 ~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        411 IKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHcCC-chhhhHHHHhh
Confidence            22333355544 45677776654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.78  E-value=2.5  Score=36.60  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=33.9

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGI----TYDRYTYCTRLSAYA   59 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~   59 (349)
                      |...=+..++.+...|++.++..++++|...=.    .-+..+|+.++-.++
T Consensus       127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls  178 (549)
T PF07079_consen  127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS  178 (549)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence            334446778888999999999999998876433    257777777544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.64  E-value=2.2  Score=35.38  Aligned_cols=154  Identities=12%  Similarity=-0.030  Sum_probs=81.2

Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH----HHHHHHhccCCHH
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR----NVISSLLKLDDLE  171 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~  171 (349)
                      -.|+..+|-..++++.+.  .|+.-.+++---.+|...|+.......++.....-.+|...|.    ...-++...|.++
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            345666666666666653  2333256666666666777766666666633333334432222    2223334667777


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc---CcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK---GREIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      +|++.-++..+.+ +.|.....+....+-..|+..++.++..+-...   +...-..-|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            7777776666654 444445555666666667777766665433321   111111122223334455567777777776


Q ss_pred             HHHH
Q 018924          249 KVLA  252 (349)
Q Consensus       249 ~~~~  252 (349)
                      .-+-
T Consensus       272 ~ei~  275 (491)
T KOG2610|consen  272 REIW  275 (491)
T ss_pred             HHHH
Confidence            6443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=0.49  Score=38.53  Aligned_cols=105  Identities=9%  Similarity=0.035  Sum_probs=72.6

Q ss_pred             hCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc
Q 018924            7 LGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN---GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD   83 (349)
Q Consensus         7 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~   83 (349)
                      .|.+.++.+-..++..-.+..+++.+...+-++...   -..|+... ..+++.| ..-+.++++.++..=. ..|+-||
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npI-qYGiF~d  134 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPD  134 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcc-hhccccc
Confidence            456666666777777777778888888887776543   11222222 2223322 2346778888887777 7888899


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQI  114 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  114 (349)
                      ..+++.+|+.+.+.+++.+|.++.-.|....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888887776653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.46  E-value=0.96  Score=34.18  Aligned_cols=92  Identities=12%  Similarity=-0.015  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcch------h
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVN------S  121 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~  121 (349)
                      .+..+...|++.|+.+.|.+.|.++. +....+.  ...+-.+|......+++..+.....+...........      .
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            56666677777777777777777766 4443332  2334556666667777776666666654432221110      1


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +|..+  .+...+++..|-+.|-
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl  137 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFL  137 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHH
Confidence            12222  2334567777777665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.45  E-value=1.8  Score=33.53  Aligned_cols=182  Identities=13%  Similarity=0.084  Sum_probs=100.6

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI  176 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  176 (349)
                      .|-+.-|.--|.+...  +.|+.+.+||-|.--+...|+++.|.+.|+....-.+....+...-.-++.-.|++..|.+-
T Consensus        78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence            3444445555555544  56666678998888888999999999999833332232233332333334456888888877


Q ss_pred             HHHHHhcCCCCCcchHHHH-HHHHHhcCcHHHHHHHHH-HHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          177 FEEWESQALCYDTRIPNFL-IDVYCRNGLLEKAENLVN-HEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                      +-..-+.. +.|+  |.+| +-.--+.-++.+|..-+. +...    .|..-|...|..|.- |++. ...+++++... 
T Consensus       156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-  225 (297)
T COG4785         156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-  225 (297)
T ss_pred             HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-
Confidence            76665543 2222  2221 111122345566655443 3333    344555554444322 2221 13344444432 


Q ss_pred             cccccCCCC-------HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          255 QTLVKWKPS-------VESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       255 ~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                           -.-+       ..||-.+.+.+...|+.++|..+|+......+
T Consensus       226 -----a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         226 -----ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             -----ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence                 1211       35666677778888999999999988876643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.44  E-value=2  Score=34.14  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=43.3

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .+.+.|.+.|.+..|..-+++|.+. .+.+..+   .-.+..+|...|-.++|...-.-+...
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            4567888999999999999988876 3333333   445777888889888888876666553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.44  E-value=0.11  Score=27.21  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=13.7

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHH
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKS  110 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~  110 (349)
                      |+.|...|.+.|++++|+++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445566666666666666666653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.42  E-value=3.2  Score=36.41  Aligned_cols=126  Identities=13%  Similarity=0.063  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---------------------
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA---------------------   76 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------   76 (349)
                      .+|.-.-+..+.+.-++.=.+..+.  .||-.+.-.++ +--......++.+++++..+                     
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            3445555666666666666665553  34433222221 11223445666666655431                     


Q ss_pred             --CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 018924           77 --DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELY  146 (349)
Q Consensus        77 --~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  146 (349)
                        ..+..|-..+-..|..++-+.|+.++|++.|++|.+..+..+...+...|+.++...+.+.++..++...
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence              0011111112234556666777777777777777664433333346667777777777777777777743

The molecular function of this protein is uncertain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.41  E-value=1.7  Score=40.47  Aligned_cols=17  Identities=18%  Similarity=0.083  Sum_probs=8.4

Q ss_pred             HhhcCcHHHHHHHHHHH
Q 018924           94 YGKVGLLDKALAMLKKS  110 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~  110 (349)
                      +.+.|++++|...|-+.
T Consensus       378 Ly~Kgdf~~A~~qYI~t  394 (933)
T KOG2114|consen  378 LYGKGDFDEATDQYIET  394 (933)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            34455555555555443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.38  E-value=1.5  Score=32.52  Aligned_cols=130  Identities=11%  Similarity=0.011  Sum_probs=90.5

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHH-HH--
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWV-IY--   87 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~--   87 (349)
                      +...|-.-++ +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+ |... -.  
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHH
Confidence            4455665555 467888999999999999887542222 2223344567889999999999999733333 4332 11  


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      .--...+...|.+++.....+.+...+..... .+-..|.-+-.+.|++.+|.+.|.
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~-sArEALglAa~kagd~a~A~~~F~  191 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRH-SAREALGLAAYKAGDFAKAKSWFV  191 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHH-HHHHHHhHHHHhccchHHHHHHHH
Confidence            12234567889999998888887654433333 566788888889999999999999

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.37  E-value=0.13  Score=26.98  Aligned_cols=26  Identities=19%  Similarity=0.392  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEME   40 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~   40 (349)
                      +|+.|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666677777777777777777643

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.32  E-value=1.3  Score=31.28  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                      +.+....|.-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|+
T Consensus        93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            344444555555555555544322 44444445555555555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.29  E-value=4.2  Score=37.21  Aligned_cols=189  Identities=14%  Similarity=0.048  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCHHHHHHHHH-HHH----hhccCChhhHHHHHHHHhccC-----
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLRIWE-LYK----KAVKVLNNGYRNVISSLLKLD-----  168 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~-~~~----~~~~~~~~~~~~li~~~~~~~-----  168 (349)
                      ...|.+.++...+.|........=.....+ +....+.+.|+.+|+ ...    ....-+......+..+|.+..     
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~  307 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI  307 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence            457888888877655322110111111222 445678899999998 433    111113345666777776643     


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh--cCCCHHHHHH
Q 018924          169 DLESAEKIFEEWESQALCYDTRIPNFLIDVYCR-NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR--QNSQIHKAVE  245 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~  245 (349)
                      +.+.|..++...-+.| .|+....-..+..... ..+...|.++|....+.|.. +...+..++....  ...+.+.|..
T Consensus       308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~  385 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA  385 (552)
T ss_pred             cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence            6677999998888877 4555443222222222 24578999999999888753 2222222222211  2347888999


Q ss_pred             HHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       246 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      ++++..+.     + .|-..--...+..+.. ++.+.+.-.+..+...+...
T Consensus       386 ~~k~aA~~-----g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~  430 (552)
T KOG1550|consen  386 YYKKAAEK-----G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV  430 (552)
T ss_pred             HHHHHHHc-----c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence            99998876     5 4432222233333444 67777766666666554433

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.25  E-value=3.6  Score=36.26  Aligned_cols=179  Identities=15%  Similarity=0.130  Sum_probs=123.7

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      |....-+++..+.++..++-...+..+|..-|  -+...|..++.+|... ..++-..+|+++. +..+ .|...-..|.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~v-e~df-nDvv~~ReLa  139 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLV-EYDF-NDVVIGRELA  139 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHH-Hhcc-hhHHHHHHHH
Confidence            55666788889999999999999999999865  3678899999999888 5577788999888 6666 4444445566


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHH--HHHhhccCChhhHHHHHHHHh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWE--LYKKAVKVLNNGYRNVISSLL  165 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~li~~~~  165 (349)
                      ..|-+ ++.+.+...|.++..+-+..    .....|..+...-  ..+.+..+.+..  ....|...-...+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            66655 88889999998887653321    1113565555431  345566665555  233344445566777778888


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY  199 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  199 (349)
                      ...++++|.+++..+.+.. ..|...-..++..+
T Consensus       217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            9999999999999887764 33444444444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.18  E-value=2.3  Score=33.80  Aligned_cols=61  Identities=20%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      +..-|.+.|.+..|..-++.|++.+++..   -....+-.+..+|...|-.++|...-+-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            34556777777777777777776422111   12344556666777777777777766665554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=2.6  Score=34.26  Aligned_cols=52  Identities=13%  Similarity=0.052  Sum_probs=25.0

Q ss_pred             HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 018924          129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEW  180 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  180 (349)
                      .....|++.+|...|+......+-+...-..++.+|...|+.+.|..++..+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            3444555555555555222222222333444555555555555555555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.03  E-value=3  Score=34.55  Aligned_cols=127  Identities=12%  Similarity=0.101  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHh--c----CcHHHHHHHHHHHHHcCcc---cchhhHHHHHHHHhcCCC---
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCR--N----GLLEKAENLVNHEKLKGRE---IHVKSWYYLATGYRQNSQ---  239 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~---  239 (349)
                      +...+++.|.+.|+..+..+|-+.......  .    ....+|..+|+.|++..+-   ++...+..++..  ..++   
T Consensus        80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~  157 (297)
T PF13170_consen   80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE  157 (297)
T ss_pred             HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence            344556666666666555444332222111  1    1245666677777665431   233344444332  2222   


Q ss_pred             -HHHHHHHHHHHHHHhcccccCCCC-H-HHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCC-CCchhHHHHh
Q 018924          240 -IHKAVEAMKKVLAAYQTLVKWKPS-V-ESLAACLDYFKDEGD--IGGAENFIELLNDKGF-IPTDLQDKLL  305 (349)
Q Consensus       240 -~~~a~~~~~~~~~~~~~~~~~~p~-~-~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~-~~~~~~~~l~  305 (349)
                       .+.+..+|+.+.+.     |+..+ . ...+.++..+.....  ...+.++++.+.+.+. .....|..+.
T Consensus       158 l~~~~E~~Y~~L~~~-----~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  158 LAERMEQCYQKLADA-----GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHh-----CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence             23455556665554     55442 2 222333322211111  3355566666666655 3334444444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.03  E-value=5.6  Score=38.83  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             ccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Q 018924           82 LDWVIYATVGNGYGKVG--LLDKALAMLKKSEE  112 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~  112 (349)
                      |+ .-.-.+|..|.+.+  .++.|+....+...
T Consensus       789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            54 33346788888887  77777777776664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.95  E-value=5.5  Score=37.32  Aligned_cols=207  Identities=10%  Similarity=0.058  Sum_probs=124.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS----AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      .-|+.+.+...++-|+.+-   +..+.  |..+...+..    -+.+.|++++|...|-+-. . -+.|+.     +|.-
T Consensus       339 ~kL~iL~kK~ly~~Ai~LA---k~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI-~-~le~s~-----Vi~k  406 (933)
T KOG2114|consen  339 TKLDILFKKNLYKVAINLA---KSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI-G-FLEPSE-----VIKK  406 (933)
T ss_pred             HHHHHHHHhhhHHHHHHHH---HhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc-c-cCChHH-----HHHH
Confidence            3455555666666665553   33333  3334444443    4557899999998887665 2 222332     5677


Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  173 (349)
                      |....++..--..++.+.+.|.....  .-..|+.+|.+.++.+.-.++.+....|..  ..-....+..|.+.+-.++|
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEA  482 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHH
Confidence            88888888888999999998875544  678899999999999998888872222221  11245666777777777777


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      ..+-.....     +......+   +-..+++++|.+.+..+.-...-+....|...+-    ...+++-..++-+...
T Consensus       483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~t  549 (933)
T KOG2114|consen  483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELIT  549 (933)
T ss_pred             HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHHh
Confidence            665544322     23333333   4456889999999887653222223333322221    2345555555544444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.93  E-value=4.2  Score=35.87  Aligned_cols=174  Identities=11%  Similarity=0.077  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVY  199 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  199 (349)
                      ...-+++..+..+..+.-+..+.. +...|  .+...|..++++|... ..+.-..+++.+.+..+ .|+..-..|..-|
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y  142 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY  142 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence            567778888888877777777777 44333  4566788888888877 55677788888777543 2333344444444


Q ss_pred             HhcCcHHHHHHHHHHHHHcCccc--c---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924          200 CRNGLLEKAENLVNHEKLKGREI--H---VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF  274 (349)
Q Consensus       200 ~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~  274 (349)
                      - .++.+.+...|..+...=++.  +   ...|.-+...  -..+.+....+..++...    .|..--...+.-+-.-|
T Consensus       143 E-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~----lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         143 E-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK----LGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             H-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh----hccchHHHHHHHHHHHh
Confidence            4 478888888888776532210  1   1244444431  134666666666666543    24444556666677788


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          275 KDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       275 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      ....++++|.+++..+.+.+..+...-..++
T Consensus       216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i  246 (711)
T COG1747         216 SENENWTEAIRILKHILEHDEKDVWARKEII  246 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence            8999999999999988887655555544454

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.86  E-value=2.4  Score=32.94  Aligned_cols=222  Identities=17%  Similarity=0.071  Sum_probs=157.2

Q ss_pred             cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHHHHhhcCcHHHH
Q 018924           26 TGNFEKLDSLMHEMEENGITY-DRYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKA  103 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a  103 (349)
                      .+....+...+.......... ....+......+...+++..+...+.... .. ........+......+...++...+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKAL-ELELLPNLAEALLNLGLLLEALGKYEEA  114 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHH-hhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence            356666666666666553221 35677778888889999999998888876 31 3335566677788888888999999


Q ss_pred             HHHHHHHHHhhcCCcchhhHHHHHH-HHhhcCCHHHHHHHHHHHHhhccC----ChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924          104 LAMLKKSEEQIKGAKVNSAYNVILT-LYGKYGKKDDVLRIWELYKKAVKV----LNNGYRNVISSLLKLDDLESAEKIFE  178 (349)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~  178 (349)
                      .+.+.........+.  ........ .+...|+++.|...+..... ..|    ....+......+...++.+.+...+.
T Consensus       115 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  191 (291)
T COG0457         115 LELLEKALALDPDPD--LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLE  191 (291)
T ss_pred             HHHHHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence            999999877443332  23444444 78899999999999994333 333    22334444445677889999999999


Q ss_pred             HHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          179 EWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       179 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...+.. .. ....+..+...+...++++.|...+......... ....+..+...+...+..+.+...+......
T Consensus       192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         192 KALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            988753 23 3567778888899999999999999998885422 2334444555555777899999999998864

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=2.8  Score=33.13  Aligned_cols=214  Identities=16%  Similarity=0.119  Sum_probs=122.9

Q ss_pred             CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc
Q 018924           44 ITYDR----YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV  119 (349)
Q Consensus        44 ~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  119 (349)
                      ..||.    ..|.....+|-..+++++|...+.+.. + +.+.+...|       -....++.|.-+.+++.+   -+..
T Consensus        23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~-~-~yEnnrslf-------hAAKayEqaamLake~~k---lsEv   90 (308)
T KOG1585|consen   23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKAS-K-GYENNRSLF-------HAAKAYEQAAMLAKELSK---LSEV   90 (308)
T ss_pred             cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHH-H-HHHhcccHH-------HHHHHHHHHHHHHHHHHH---hHHH
Confidence            45554    356666777888889999888777664 2 222222222       123445667777777765   2333


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHH---HHHhhccCChh--hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924          120 NSAYNVILTLYGKYGKKDDVLRIWE---LYKKAVKVLNN--GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF  194 (349)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (349)
                      ...|+-....|...|.++.|-..++   ....++.|+..  .|..-+...-..++...|.++               +..
T Consensus        91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk  155 (308)
T KOG1585|consen   91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGK  155 (308)
T ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHH
Confidence            3578888888999999888877777   23334444431  222222222233333333322               334


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCc----ccch-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGR----EIHV-KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA  269 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  269 (349)
                      .-..+.+..++++|-..+.+-.....    -++. ..|-..|-.+....++..|...++.-.+.  +...-.-+..+...
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi--p~f~~sed~r~len  233 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI--PAFLKSEDSRSLEN  233 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC--ccccChHHHHHHHH
Confidence            44556666777776665544332110    1111 23555566677778999999999885543  00011225678888


Q ss_pred             HHHHHHhcCChhhHHHHH
Q 018924          270 CLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       270 ll~~~~~~g~~~~a~~~~  287 (349)
                      |+.+| ..||.+++..++
T Consensus       234 LL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  234 LLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHh-ccCCHHHHHHHH
Confidence            88887 678888887765

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.48  E-value=2.4  Score=31.56  Aligned_cols=135  Identities=15%  Similarity=0.133  Sum_probs=77.8

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924           34 SLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        34 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      +.+..+.+.+++|+...+..++..+.+.|++.....+    . ..++-+|.......+-.+.  +....+.++--+|..+
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----l-q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----L-QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----H-hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            4455556678888888888888888888886654433    3 3344455444333332222  2233344444444332


Q ss_pred             hcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924          114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  183 (349)
                         ..  ..+..++..+...|++-+|+++.+....   .+......++.+..+.+|...-..+++-..+.
T Consensus        88 ---L~--~~~~~iievLL~~g~vl~ALr~ar~~~~---~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 ---LG--TAYEEIIEVLLSKGQVLEALRYARQYHK---VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ---hh--hhHHHHHHHHHhCCCHHHHHHHHHHcCC---cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               11  2566777788888888888888762111   22223456677777777776666666655543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.31  E-value=2.4  Score=31.13  Aligned_cols=16  Identities=31%  Similarity=0.279  Sum_probs=7.0

Q ss_pred             hhcCcHHHHHHHHHHH
Q 018924           95 GKVGLLDKALAMLKKS  110 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~  110 (349)
                      ...|++++|.++|+++
T Consensus        55 i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   55 IVRGDWDDALRLLREL   70 (160)
T ss_pred             HHhCCHHHHHHHHHHH
Confidence            3444444444444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.30  E-value=0.2  Score=25.66  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .+|..+...|...|++++|+..|+++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            35667777777788888888888777743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.27  E-value=0.65  Score=30.52  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +.-++.+-++.+...     .+.|++....+.+++|.+.+|+..|.++|+-++.+...+...|..++
T Consensus        22 D~we~rr~mN~l~~~-----DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGY-----DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence            334455555555544     66677777777777777777777777777666644222333454443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.18  E-value=0.12  Score=26.70  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=15.9

Q ss_pred             CCcchhhHHHHHHHHhhcCCHHHHH
Q 018924          116 GAKVNSAYNVILTLYGKYGKKDDVL  140 (349)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~a~  140 (349)
                      .|+...+|+.+...|...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            4555466666777777777666664

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.07  E-value=5.6  Score=34.82  Aligned_cols=53  Identities=9%  Similarity=-0.085  Sum_probs=24.1

Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      ...|+++.+...+...... +.....+..++++...+.|+++.|...-..|...
T Consensus       334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~  386 (831)
T PRK15180        334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN  386 (831)
T ss_pred             HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence            3445555555544443332 1222334444455555555555555555444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.02  E-value=1.1  Score=39.06  Aligned_cols=78  Identities=9%  Similarity=-0.045  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924           52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL  129 (349)
Q Consensus        52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (349)
                      ..+..++-+.|+.++|++.+++|.++........+...|+.++...+.+.++..++.+..+.....+....|+..+-.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            345556668899999999999997333332344566789999999999999999999976533333333566665543

The molecular function of this protein is uncertain.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.72  E-value=3.9  Score=33.27  Aligned_cols=145  Identities=11%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh-cC-cHHHHHHHHHHHHHh-hcCCcchhhHHHHH
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK-VG-LLDKALAMLKKSEEQ-IKGAKVNSAYNVIL  127 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~  127 (349)
                      |..++.   +...+.+|+++|+....+..+--|..+...+++.... .+ ....-.++.+-+... +..++. .+...++
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~-~vi~~Il  209 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTR-NVIISIL  209 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCCh-hHHHHHH
Confidence            555553   3344566777777543122344566666666665554 22 222233333333322 234445 6777888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHh--hccCChhhHHHHHHHHhccCCHHHHHHHHHH-----HHhcCCCCCcchHHHHHHHH
Q 018924          128 TLYGKYGKKDDVLRIWELYKK--AVKVLNNGYRNVISSLLKLDDLESAEKIFEE-----WESQALCYDTRIPNFLIDVY  199 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~  199 (349)
                      ..+++.++|..-.++++....  +..-|...|..+|..-...|+..-..++.++     +.+.++..+...-..+-..+
T Consensus       210 ~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  210 EILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            888888888888888883333  2445667788888888888888777776654     23455555555444444433

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.69  E-value=0.64  Score=30.89  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      .+.|++....+.+++|.+.+++..|.++|+-++.+-.+....|..++
T Consensus        40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l   86 (108)
T PF02284_consen   40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL   86 (108)
T ss_dssp             SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            55666666666666666666666666666666555322222454444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.65  E-value=0.2  Score=25.85  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=11.2

Q ss_pred             chhhHHHHHHHHhcCCCHHHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~  244 (349)
                      |...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4445555555555555555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.63  E-value=6.4  Score=34.23  Aligned_cols=259  Identities=10%  Similarity=0.032  Sum_probs=140.2

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH--HH
Q 018924           23 YYKTGNFEKLDSLMHEMEENGITYD------RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN--GY   94 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~   94 (349)
                      +-+.+++++|..+|.++-+.- .-+      ...-+.++++|.. ++++.....+..+.+..|-    ..|-.|..  .+
T Consensus        16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~   89 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFKALVA   89 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHHHHHH
Confidence            346789999999999987652 222      2234556666654 5677777777777633332    22333333  34


Q ss_pred             hhcCcHHHHHHHHHHHHHh--hcCC------------cchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc----CChh
Q 018924           95 GKVGLLDKALAMLKKSEEQ--IKGA------------KVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK----VLNN  155 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~----~~~~  155 (349)
                      .+.+++++|.+.+..-.+.  +-.+            +. ..=+..+.++...|++.++..+++ +...-.+    .+..
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df-~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d  168 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF-FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD  168 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence            5678899999888776554  1111            11 112566778889999999999998 5444444    6778


Q ss_pred             hHHHHHHHHhccC--------C-------HHHHHHHHHHHHhc------CCCCCcchHHHHHHHHHhc--CcHHHHHHHH
Q 018924          156 GYRNVISSLLKLD--------D-------LESAEKIFEEWESQ------ALCYDTRIPNFLIDVYCRN--GLLEKAENLV  212 (349)
Q Consensus       156 ~~~~li~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~  212 (349)
                      +|+.++-.+.++=        .       ++.+.-+..++...      .+-|.......++....-.  .+..--.+++
T Consensus       169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l  248 (549)
T PF07079_consen  169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL  248 (549)
T ss_pred             HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence            8887665554321        1       11111111222110      1122222222222221111  1111122222


Q ss_pred             HHHHHcCcccchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC----CHHHHHHHHHHHHhcCChhhHHHHH
Q 018924          213 NHEKLKGREIHVK-SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP----SVESLAACLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       213 ~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~  287 (349)
                      +.-...-+.|+.. ....++..+.+  +.+++..+.+.+...     .+.+    -..+|..++....+.++...|.+.+
T Consensus       249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-----~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l  321 (549)
T PF07079_consen  249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-----KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL  321 (549)
T ss_pred             HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            2222333334432 23344444444  556666665555543     2222    2467888888888999999999988


Q ss_pred             HHHhhCCC
Q 018924          288 ELLNDKGF  295 (349)
Q Consensus       288 ~~~~~~~~  295 (349)
                      ..+...+|
T Consensus       322 ~lL~~ldp  329 (549)
T PF07079_consen  322 ALLKILDP  329 (549)
T ss_pred             HHHHhcCC
Confidence            87776554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.49  E-value=8.5  Score=35.29  Aligned_cols=179  Identities=14%  Similarity=-0.030  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHhhcCCCCCccHHHHHHH--HHH-HhhcCcHHHHHHHHHHHHH-------hhcCCcchhhHHHHHHHHhhc
Q 018924           64 HEGIDKILTMMEADPNVALDWVIYATV--GNG-YGKVGLLDKALAMLKKSEE-------QIKGAKVNSAYNVILTLYGKY  133 (349)
Q Consensus        64 ~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~  133 (349)
                      ...+.++++... +.|. .........  ..+ +....+.+.|+..|+...+       .+   .. .+...+..+|.+.
T Consensus       228 ~~~a~~~~~~~a-~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~-~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAA-KLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP-PAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHH-hhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC-ccccHHHHHHhcC
Confidence            456888888877 4444 222222222  333 5567899999999999876       33   22 4567788888774


Q ss_pred             C-----CHHHHHHHHHHHHhhccCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH----hcC
Q 018924          134 G-----KKDDVLRIWELYKKAVKVLNNGYRNVISSLLK-LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC----RNG  203 (349)
Q Consensus       134 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~  203 (349)
                      .     +.+.|..++......-.|+....-..+..... ..+...|.++|...-+.|.. ..  +-.+..+|.    ...
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv~r  378 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGVER  378 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCcCC
Confidence            3     66779999985444444555433333222222 24678999999999988842 22  222333332    234


Q ss_pred             cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      +.+.|..++++..+.|. |....-...+..+.. ++++.+.-.+..+.+.
T Consensus       379 ~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAEL  426 (552)
T ss_pred             CHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence            68999999999999873 222222223333433 6666666666665554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=92.34  E-value=1.3  Score=29.22  Aligned_cols=44  Identities=11%  Similarity=-0.087  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +.+-++.+....+.|++....+.+.+|-+.+++..|.++|+..+
T Consensus        26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444455555555555555555555555555555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.19  E-value=2.4  Score=28.31  Aligned_cols=43  Identities=12%  Similarity=0.041  Sum_probs=19.3

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           33 DSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        33 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      .+-++.+...++-|++.+..+.+++|-+.+++..|.++++.++
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333344444445555555555555555555555555555444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.18  E-value=0.34  Score=24.62  Aligned_cols=28  Identities=36%  Similarity=0.707  Sum_probs=18.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .|..+...+...|++++|++.|++.++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4555666677777777777777777643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.98  E-value=13  Score=36.46  Aligned_cols=114  Identities=15%  Similarity=0.088  Sum_probs=64.4

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG----YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID  197 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  197 (349)
                      .|.-.++.--+.|-+.+|+.++.       |+...    |.+....+.....+++|--.|+..-+         ...-+.
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly~-------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~  973 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALYK-------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALK  973 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhheec-------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHH
Confidence            44555555555666666666655       44433    33444444556666666666654322         123456


Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +|..+|++.+|..+..++....-. -..+-..|+.-+...+++-+|-++..+...
T Consensus       974 a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  974 AYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            677777777777776665531100 111225566777777887777777777653

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.74  E-value=3.4  Score=29.81  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCC-----CccHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHH
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNV-----ALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYN  124 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~  124 (349)
                      .+.++.-.+..+++.....+++.+. ....     ..+...|.+++.+.++... ---+..+|.-+++.+.+.+. .-|.
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~-~dy~  119 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTP-SDYS  119 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCH-HHHH
Confidence            4455555455555555555555442 1100     1344556666666655554 34455566666655555555 5666


Q ss_pred             HHHHHHhhc
Q 018924          125 VILTLYGKY  133 (349)
Q Consensus       125 ~l~~~~~~~  133 (349)
                      .++.++.+-
T Consensus       120 ~li~~~l~g  128 (145)
T PF13762_consen  120 CLIKAALRG  128 (145)
T ss_pred             HHHHHHHcC
Confidence            666665544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.42  E-value=8.1  Score=32.84  Aligned_cols=52  Identities=13%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      ..+.-+.|+++...+........  .++...+..+...  +.++.+++...++...
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r   56 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR   56 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence            44566677777744444443322  2234444444432  6677777776666654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.27  E-value=0.68  Score=24.79  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEE   41 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~   41 (349)
                      .+++.|...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566777777777777777777766643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.25  E-value=3.7  Score=31.39  Aligned_cols=93  Identities=14%  Similarity=-0.026  Sum_probs=60.9

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhccCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924          126 ILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC  200 (349)
Q Consensus       126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  200 (349)
                      =.+-+..+|++++|..-|......+++..     +.|..-..+..+.+.++.|..-..+.++.+.. .......-..+|.
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye  179 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE  179 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence            34456678888888888885555555433     34555666777888888888888777765421 1112222234677


Q ss_pred             hcCcHHHHHHHHHHHHHcC
Q 018924          201 RNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       201 ~~~~~~~a~~~~~~~~~~~  219 (349)
                      +..+++.|..=|+.+.+..
T Consensus       180 k~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESD  198 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhC
Confidence            7788888888888888754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.16  E-value=0.73  Score=24.67  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      .+++.|...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3455666666666666666666666543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.10  E-value=4.8  Score=29.62  Aligned_cols=51  Identities=16%  Similarity=0.060  Sum_probs=22.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIP-NFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      +.++.+.+..++..+.-.  .|..... ..-...+...|++.+|..+|+.+...
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            444555555555555442  2222111 11122234555566666666555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.96  E-value=5.2  Score=29.79  Aligned_cols=32  Identities=9%  Similarity=0.216  Sum_probs=17.1

Q ss_pred             HHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHH
Q 018924           70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDK  102 (349)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  102 (349)
                      .++.+. ..+++|+...|..+++.+.+.|++..
T Consensus        16 YirSl~-~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   16 YIRSLN-QHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            333444 44555555566666666666665443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.94  E-value=1  Score=22.86  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=15.2

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      +|..+..+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555566666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.75  E-value=6.9  Score=30.82  Aligned_cols=58  Identities=12%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      .++++|+..|+..-+-+........-...+.-+...-+..+++.+|..+|+++.....
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566666666665543221112122222233333344677889999999988877644

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.51  E-value=0.28  Score=35.55  Aligned_cols=129  Identities=12%  Similarity=0.106  Sum_probs=80.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV   97 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (349)
                      .+|+.+.+.+.+......++.+...+...+....+.++..|++.++.++..++++...   +..+     ..++..|.+.
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~   83 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKH   83 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhc
Confidence            3567777888999999999999987666678889999999999988787777776332   2222     2366777777


Q ss_pred             CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924           98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus        98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      |.+++|.-++.++...          ...+..+...++++.|.+.+.     -.++...|..++..|...+.
T Consensus        84 ~l~~~a~~Ly~~~~~~----------~~al~i~~~~~~~~~a~e~~~-----~~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   84 GLYEEAVYLYSKLGNH----------DEALEILHKLKDYEEAIEYAK-----KVDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             TSHHHHHHHHHCCTTH----------TTCSSTSSSTHCSCCCTTTGG-----GCSSSHHHHHHHHHHCTSTC
T ss_pred             chHHHHHHHHHHcccH----------HHHHHHHHHHccHHHHHHHHH-----hcCcHHHHHHHHHHHHhcCc
Confidence            7777777777664221          111111333444444443332     12345566777766665543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.18  E-value=9.7  Score=31.62  Aligned_cols=150  Identities=15%  Similarity=0.123  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh--cC----CHHHHHHHHH-HHHhhcc---CChhhHHHHHHHHhccCC
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK--YG----KKDDVLRIWE-LYKKAVK---VLNNGYRNVISSLLKLDD  169 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~-~~~~~~~---~~~~~~~~li~~~~~~~~  169 (349)
                      +++...+++.|.+.|...+. .+|-+.......  ..    ....|..+|+ |.....-   ++...+..++..  ...+
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSE-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHhccCccC-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            34556677777777776666 555443322222  22    2345667777 4433321   444555555443  3333


Q ss_pred             ----HHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhc-Cc--HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          170 ----LESAEKIFEEWESQALCYDTRI-PNFLIDVYCRN-GL--LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       170 ----~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                          .+.++.+|+.+.+.|+..+... +.+-+-+++.. ..  ..++.++++.+.+.|+++....|..+.-...-.+..+
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~  234 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE  234 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence                2456677777777676554432 22222222221 11  4577778888888888877766665544332333332


Q ss_pred             HHHHHHHHHHH
Q 018924          242 KAVEAMKKVLA  252 (349)
Q Consensus       242 ~a~~~~~~~~~  252 (349)
                      +..+-+.++.+
T Consensus       235 ~~~~~i~ev~~  245 (297)
T PF13170_consen  235 KIVEEIKEVID  245 (297)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.01  E-value=7.1  Score=29.98  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh---hcCCcchhhHHHHHHHHhhcC
Q 018924           58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ---IKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      ..+.|+ +.|.+.|-++. ..+.--+......|...|. ..+.+++..++.+..+.   +..+++ ..+.+|++.+.+.|
T Consensus       117 Wsr~~d-~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~-eil~sLas~~~~~~  192 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP-EILKSLASIYQKLK  192 (203)
T ss_pred             hhccCc-HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhc
Confidence            345555 55777777777 4444355555555555555 66788888888777653   224555 78888999998888


Q ss_pred             CHHHHH
Q 018924          135 KKDDVL  140 (349)
Q Consensus       135 ~~~~a~  140 (349)
                      +++.|-
T Consensus       193 ~~e~AY  198 (203)
T PF11207_consen  193 NYEQAY  198 (203)
T ss_pred             chhhhh
Confidence            888774

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.88  E-value=4.6  Score=30.97  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      +.|.+.|-.+...+.--++.....|...| ...+.+++..++.+..+   .+-.+|+..+.+|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            34555555554444333333333333222 24455555555554443   12234455555555555555555554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.29  E-value=1.1  Score=22.55  Aligned_cols=31  Identities=13%  Similarity=0.012  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          265 ESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      ..+..+...+...|++++|.+.+++..+..|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3566777888999999999999998877644

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.82  E-value=0.12  Score=37.43  Aligned_cols=53  Identities=15%  Similarity=0.230  Sum_probs=23.3

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN  213 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  213 (349)
                      +..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            33344444444444444444443333334444555555555544444444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.28  E-value=3.1  Score=32.30  Aligned_cols=55  Identities=16%  Similarity=-0.029  Sum_probs=25.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924           54 RLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS  110 (349)
Q Consensus        54 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  110 (349)
                      -++.+.+.+.+++++...++-. +.+. .+..+-..++..+|-.|++++|..-++-.
T Consensus         7 t~seLL~~~sL~dai~~a~~qV-kakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQV-KAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHH-hcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            3444445555555555544433 2222 23333334555555555555555444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.25  E-value=9.8  Score=29.07  Aligned_cols=123  Identities=11%  Similarity=-0.019  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH---
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYC--TRLSAYADASDHEGIDKILTMMEADPNVALDWVIY---   87 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---   87 (349)
                      ...|..++.... .+.+ +.....+.+...+....-.++.  .+...+...|++++|..-++... .  . |....+   
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l-~--~-t~De~lk~l  127 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL-A--Q-TKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-c--c-chhHHHHHH
Confidence            456777777654 4444 6666777777653221222232  23556788999999999998776 2  2 222222   


Q ss_pred             --HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           88 --ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        88 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                        -.|.......|.+|+|+.+++.....+..  . .....-.+.+...|+-++|..-|+
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~-~~~elrGDill~kg~k~~Ar~ay~  183 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKEESWA--A-IVAELRGDILLAKGDKQEARAAYE  183 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccccccHH--H-HHHHHhhhHHHHcCchHHHHHHHH
Confidence              34667888899999999999998764332  2 345667788999999999999999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.10  E-value=19  Score=32.68  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             hcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH
Q 018924          132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL  211 (349)
Q Consensus       132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  211 (349)
                      +.|+++.|.++....     .+..-|..|.++....+++..|.+.|.....         |..|+..+...|+-+....+
T Consensus       649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l  714 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL  714 (794)
T ss_pred             hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence            445555555544311     1233466666666666666666666654432         33455555556665555554


Q ss_pred             HHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          212 VNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      -....+.|..      |...-+|...|+++++.+++.+
T Consensus       715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence            4444444422      2233344556666666666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.98  E-value=1.8  Score=21.59  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=16.5

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHh
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      .+..++.+.|++++|.+.|+++.+.
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3555666667777777777776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.63  E-value=7.8  Score=30.20  Aligned_cols=60  Identities=13%  Similarity=-0.025  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      .+.-++.+.+.+...+++...+...+.-+.|..+-..+++.+|-.|++++|..-++..-+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~   63 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT   63 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence            344555666667777777666633333344445555666667777777777666555443

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.31  E-value=12  Score=30.43  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=46.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHhh-cCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh-
Q 018924           54 RLSAYADASDHEGIDKILTMME-ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG-  131 (349)
Q Consensus        54 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  131 (349)
                      -|.+++..+++.++..+.-+-- .-..++|  .+...-|-.|.+.|....+.++-..-....-.... .-|.+++..|. 
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l-p~y~~vaELyLl  165 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL-PEYGTVAELYLL  165 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc-hhhHHHHHHHHH
Confidence            3666777777777665543332 1112323  23334455567777777666666655543222222 34555555544 


Q ss_pred             ----hcCCHHHHHHHHH
Q 018924          132 ----KYGKKDDVLRIWE  144 (349)
Q Consensus       132 ----~~~~~~~a~~~~~  144 (349)
                          -.|.+++|+++..
T Consensus       166 ~VLlPLG~~~eAeelv~  182 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELVV  182 (309)
T ss_pred             HHHhccccHHHHHHHHh
Confidence                3577777776663

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.10  E-value=7.7  Score=34.96  Aligned_cols=151  Identities=16%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhH
Q 018924           46 YDRYTYCTRLSAYADAS--DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY  123 (349)
Q Consensus        46 p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  123 (349)
                      |+..+..+++.-....-  .-+-+-.++..|. . ...|-+.+.|...-.+--.|+...|...+.......+.... +..
T Consensus       569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v~~  645 (886)
T KOG4507|consen  569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-VPL  645 (886)
T ss_pred             chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc-ccH
Confidence            56666555554333211  1223444555554 3 44466666554444444568889999888877654444444 566


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924          124 NVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC  200 (349)
Q Consensus       124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  200 (349)
                      -.|.+...+.|...+|..++.....-....+.++..+.+++.-..+.+.|.+.|+...+.. +.+...-+.|...-|
T Consensus       646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence            7788888888888888888873333334455677888889999999999999999888753 334555555554444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.48  E-value=12  Score=28.29  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      +++|.+.|+++.       ...|+..+|..-+....      +|-++..++.+.
T Consensus        96 F~kA~~~FqkAv-------~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~  136 (186)
T PF06552_consen   96 FEKATEYFQKAV-------DEDPNNELYRKSLEMAA------KAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHH-------HH-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-------hcCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence            555666666665       45899999988887653      355555555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.24  E-value=1.7  Score=21.60  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=12.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      +..++.+.|++++|.+.|+++++.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            334444455555555555555543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.24  E-value=2.8  Score=21.09  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEE   41 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~   41 (349)
                      +|..+...|.+.|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            456666677777777777777776654

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.15  E-value=2.9  Score=21.07  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455566666666677777666666654

...

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.88  E-value=30  Score=32.29  Aligned_cols=83  Identities=13%  Similarity=0.069  Sum_probs=38.1

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc-CCcchhhHHHHHHHHhh-
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-GAKVNSAYNVILTLYGK-  132 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-  132 (349)
                      ...+.-.|+++.|++.+-+..   ....+.+++...+..|.-.+-.+...   ..+..... .+.. .-+..||..|.+ 
T Consensus       265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~-ln~arLI~~Y~~~  337 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPP-LNFARLIGQYTRS  337 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCC-cCHHHHHHHHHHH
Confidence            344556799999998876622   44466777555544443322222211   22222111 1222 467788888876 


Q ss_pred             --cCCHHHHHHHHH
Q 018924          133 --YGKKDDVLRIWE  144 (349)
Q Consensus       133 --~~~~~~a~~~~~  144 (349)
                        ..+..+|.++|-
T Consensus       338 F~~td~~~Al~Y~~  351 (613)
T PF04097_consen  338 FEITDPREALQYLY  351 (613)
T ss_dssp             TTTT-HHHHHHHHH
T ss_pred             HhccCHHHHHHHHH
Confidence              457778888777

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=85.44  E-value=5.5  Score=27.84  Aligned_cols=59  Identities=15%  Similarity=0.204  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +..+-++....-     .+.|++.....-+++|.+.+|+..|.++|+-++.+-.+....|..++
T Consensus        67 EvrkglN~l~~y-----DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v  125 (149)
T KOG4077|consen   67 EVRKGLNNLFDY-----DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV  125 (149)
T ss_pred             HHHHHHHhhhcc-----ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            344444555444     67788888888888888888888888888877766443333455444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.04  E-value=3.4  Score=22.79  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=12.3

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      |..+|...|+.+.|..+++++..
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44455555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.48  E-value=3.1  Score=22.96  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=14.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEEN   42 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~   42 (349)
                      |..+|.+.|+.+.|.+++++....
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            445666666666666666666643

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.20  E-value=25  Score=29.88  Aligned_cols=28  Identities=14%  Similarity=0.502  Sum_probs=18.3

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEE   41 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~   41 (349)
                      +...|.++...  +.|+++++...++.+..
T Consensus        30 ~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen   30 EYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             hHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            44455555433  77888888887777655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=84.00  E-value=29  Score=30.41  Aligned_cols=59  Identities=22%  Similarity=0.265  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      ...|+.-|...|++.+|.+.++++.--.+.....+.+++ ..-+.|  ...+.++++.-..|
T Consensus       512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg  573 (645)
T KOG0403|consen  512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG  573 (645)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            456777788888888888877776544444555677777 777766  35666666655444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.77  E-value=14  Score=26.81  Aligned_cols=19  Identities=21%  Similarity=0.158  Sum_probs=9.6

Q ss_pred             HhhcCcHHHHHHHHHHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~  112 (349)
                      +...|++++|.++|+++.+
T Consensus        54 ~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        54 LIARGNYDEAARILRELLS   72 (153)
T ss_pred             HHHcCCHHHHHHHHHhhhc
Confidence            4445555555555555443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13934 ELYS: Nuclear pore complex assembly

Probab=83.51  E-value=20  Score=28.37  Aligned_cols=109  Identities=15%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             CCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc
Q 018924           42 NGITYDRYTYCTRLSAYA--DASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV  119 (349)
Q Consensus        42 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  119 (349)
                      .++++.   |...+.++.  ..+++++|.+.+   . +..+.|+-..  -++.++...|+.+.|..+++...   +....
T Consensus        73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L---~-~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s  140 (226)
T PF13934_consen   73 FGIPPK---YIKFIQGFWLLDHGDFEEALELL---S-HPSLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSS  140 (226)
T ss_pred             hCCCHH---HHHHHHHHHHhChHhHHHHHHHh---C-CCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCC
Confidence            355533   444555544  346666666555   3 4444343332  36777777888888888888753   33333


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924          120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL  165 (349)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  165 (349)
                      ......++.. ..++...+|..+-+......+  ...+..++..+.
T Consensus       141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~--~~l~e~l~~~~~  183 (226)
T PF13934_consen  141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELR--RRLFEQLLEHCL  183 (226)
T ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhh--HHHHHHHHHHHH
Confidence            2333444444 667888888887772222211  344555555555

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=83.34  E-value=44  Score=32.06  Aligned_cols=195  Identities=12%  Similarity=0.033  Sum_probs=107.6

Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcch------hhHHHHHH-HHhhcCCHHHHHHHHHHHHhhcc-----CChhhHHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVN------SAYNVILT-LYGKYGKKDDVLRIWELYKKAVK-----VLNNGYRNVI  161 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li  161 (349)
                      .....++++|..+..+....-..|+..      ..|+.+-. .....|+++.|.++.+......+     +....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            445788999999999887654333221      13333332 23457889999998884444333     3445677778


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHH-----HHHhcCcH--HHHHHHHHHHHHcCc--c----cchhhHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLID-----VYCRNGLL--EKAENLVNHEKLKGR--E----IHVKSWY  228 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~--~~a~~~~~~~~~~~~--~----~~~~~~~  228 (349)
                      .+..-.|++++|..+.....+..-..+...+..+..     .+-..|+.  ++....|........  +    +-..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            888889999999999888776433444444332221     23445633  233333333322100  1    1123344


Q ss_pred             HHHHHHhcC-CCHHHHHHHHHHHHHHhcccccCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          229 YLATGYRQN-SQIHKAVEAMKKVLAAYQTLVKWKPSVE--SLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       229 ~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      .+..++.+. +...++..-+.--...     ...|-..  .+..|.......|+.++|...+.++...
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~-----~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVY-----TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhc-----ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            445555441 1222222222222211     1122111  2236777888999999999999888775

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=82.95  E-value=25  Score=28.88  Aligned_cols=135  Identities=11%  Similarity=0.072  Sum_probs=90.2

Q ss_pred             cHHHHHHHHHHHHH-hhcCCcchhhHHHHHHHHhh-cCC-HHHHHHHHH-H-HHhhccCChhhHHHHHHHHhccCCHHHH
Q 018924           99 LLDKALAMLKKSEE-QIKGAKVNSAYNVILTLYGK-YGK-KDDVLRIWE-L-YKKAVKVLNNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus        99 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~-~-~~~~~~~~~~~~~~li~~~~~~~~~~~a  173 (349)
                      .+.+|+++|+.... ..+..+. .+...+++.... .+. ...-.++.+ + ...+..++..+...++..++..+++.+-
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~-evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDE-EVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHhhccCcccceeeCh-HHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            35667777773222 2244555 677777777765 222 222223333 1 2334567778888999999999999999


Q ss_pred             HHHHHHHHhc-CCCCCcchHHHHHHHHHhcCcHHHHHHHHHH-----HHHcCcccchhhHHHHHHHH
Q 018924          174 EKIFEEWESQ-ALCYDTRIPNFLIDVYCRNGLLEKAENLVNH-----EKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       174 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~  234 (349)
                      .++++..... +...|...|..+|......|+..-...+.++     +...++..+...-..+-..+
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            9999887655 5667888999999999999999988888764     33455655555544444433

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=82.93  E-value=6.4  Score=22.17  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=25.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 018924           22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLS   56 (349)
Q Consensus        22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~   56 (349)
                      ...+.|-.+++..+++.|.+.|+..+...|..++.
T Consensus        11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~   45 (48)
T PF11848_consen   11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR   45 (48)
T ss_pred             HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence            34567777788888888888887777777776664

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.82  E-value=3.2  Score=19.66  Aligned_cols=15  Identities=20%  Similarity=0.153  Sum_probs=5.7

Q ss_pred             HHHHhhcCCHHHHHH
Q 018924          127 LTLYGKYGKKDDVLR  141 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~  141 (349)
                      ...+...|++++|..
T Consensus         8 a~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    8 ARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHcCCHHHHHH
Confidence            333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.58  E-value=16  Score=30.60  Aligned_cols=93  Identities=16%  Similarity=-0.027  Sum_probs=55.9

Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      +-|.+.|.+++|+..|......  .|-.++.+..-..+|.+...+..|..=......-...-...|+.-+.+-...|...
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            4577888888888888877653  44222677777778888877776665555222211122234444455555556666


Q ss_pred             HHHHHHHHHHhcCCCCC
Q 018924          172 SAEKIFEEWESQALCYD  188 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~  188 (349)
                      +|.+-++..++  +.|+
T Consensus       183 EAKkD~E~vL~--LEP~  197 (536)
T KOG4648|consen  183 EAKKDCETVLA--LEPK  197 (536)
T ss_pred             HHHHhHHHHHh--hCcc
Confidence            66666666655  3454

>PHA02875 ankyrin repeat protein; Provisional

Probab=82.57  E-value=33  Score=30.07  Aligned_cols=199  Identities=13%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             hhhhCCCccHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCC
Q 018924            4 MRDLGLARTTVV--YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPN   79 (349)
Q Consensus         4 m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~   79 (349)
                      +.+.|..|+...  ..+.+...++.|+.+    +.+.+.+.|..|+..  .....+...+..|+.+.+..+++.-. ...
T Consensus        21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~   95 (413)
T PHA02875         21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK-FAD   95 (413)
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC-ccc
Confidence            345565554432  223444455566654    334444555544422  11223444556677766555554321 100


Q ss_pred             CCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh-hHHHHHHHHhhcCCHHHHHHHHHHHHhhccC---Chh
Q 018924           80 VALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKKAVKV---LNN  155 (349)
Q Consensus        80 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~  155 (349)
                      -..+.. -.+.+...+..|+.+    +++.+.+.|..++... .-.+.+...+..|+.+-+..+++   .+..+   |..
T Consensus        96 ~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~---~g~~~~~~d~~  167 (413)
T PHA02875         96 DVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID---HKACLDIEDCC  167 (413)
T ss_pred             ccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCC
Confidence            000000 112334445556654    3333344454443211 11233444556677665555444   22222   222


Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRI---PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV  224 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  224 (349)
                      -.+.+. ..+..|+.+    +.+.+.+.|..++...   ...++...+..|+.+-+    +.+.+.|..++.
T Consensus       168 g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~n~  230 (413)
T PHA02875        168 GCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADCNI  230 (413)
T ss_pred             CCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCcch
Confidence            222333 233456654    3444555665554332   12344444556666543    344455655543

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.27  E-value=23  Score=28.82  Aligned_cols=19  Identities=11%  Similarity=0.235  Sum_probs=8.8

Q ss_pred             HHhccCCHHHHHHHHHHHH
Q 018924          163 SLLKLDDLESAEKIFEEWE  181 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~  181 (349)
                      .|.+.+.+..+.++-....
T Consensus       127 LysKv~Ep~amlev~~~WL  145 (309)
T PF07163_consen  127 LYSKVQEPAAMLEVASAWL  145 (309)
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            3444444444444444443

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.22  E-value=12  Score=24.97  Aligned_cols=57  Identities=16%  Similarity=0.078  Sum_probs=30.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      .++.+.|++++|..+.+.         ...||...|..|-.  .+.|-...+..-+.++...+.|...
T Consensus        47 sSLmNrG~Yq~Al~l~~~---------~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~p~lq  103 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNK---------LCYPDLEPWLALCE--WRLGLGSALESRLNRLAASGDPRLQ  103 (115)
T ss_pred             HHHHccchHHHHHHhcCC---------CCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCHHHH
Confidence            345556666666655544         23556555555443  2555555555555555555444433

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP)

Probab=82.21  E-value=0.53  Score=27.28  Aligned_cols=37  Identities=8%  Similarity=0.107  Sum_probs=32.9

Q ss_pred             cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHHhc
Q 018924          312 KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEEKA  348 (349)
Q Consensus       312 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~  348 (349)
                      ++.+.+|+.|..+.+.|....+...+++.+.+.++..
T Consensus         9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~L~~~~~   45 (55)
T PF07443_consen    9 EELIAVFKQMPSRNYDPKTRKWNFSLEDYSTLMKKVR   45 (55)
T ss_pred             HHHHHHHHcCcccccCccceeeeeeHHHHHHHHHHHh
Confidence            5778999999999999999999999999999987753

This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.84  E-value=12  Score=28.65  Aligned_cols=37  Identities=11%  Similarity=0.001  Sum_probs=27.8

Q ss_pred             cCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          259 KWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      ...|+..+|..++.++...|+.++|.+..+++....+
T Consensus       139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4477888888878888888888888877777776644

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.39  E-value=29  Score=28.57  Aligned_cols=56  Identities=11%  Similarity=0.062  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHH
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELY  322 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~  322 (349)
                      +......|..+|.+.+|.++.+.....++.+...|-.++ .+...|  -.|.+.++++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            445556789999999999999999999998999999999 999888  47777777774

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=81.30  E-value=42  Score=30.49  Aligned_cols=186  Identities=9%  Similarity=-0.092  Sum_probs=120.2

Q ss_pred             CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH
Q 018924           81 ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV  160 (349)
Q Consensus        81 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  160 (349)
                      +++..+|..-+.--.+.|+.+.+.-+|++..-.. ..-. ..|-..+.-....|+.+.|..++.+...-..|+......+
T Consensus       294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            3567788888899999999999999999876421 1122 3676677777777999999988885444333333222222


Q ss_pred             H-HHHhccCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCcHHHHHH---HHHHHHHcCcccchhhHHHHHHH--
Q 018924          161 I-SSLLKLDDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGLLEKAEN---LVNHEKLKGREIHVKSWYYLATG--  233 (349)
Q Consensus       161 i-~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~--  233 (349)
                      - ..+-..|+.+.|..+++.+.+.-  |+. ..-..-+....+.|..+.+..   ++.......  -+....+.+.--  
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~  447 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFA  447 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHH
Confidence            2 22345789999999999998763  443 223334455677888888873   333333211  123333333332  


Q ss_pred             ---HhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924          234 ---YRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG  278 (349)
Q Consensus       234 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g  278 (349)
                         +.-.++.+.|..++.++.+      .+.++...|..++.-+...+
T Consensus       448 r~~~~i~~d~~~a~~~l~~~~~------~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  448 RLRYKIREDADLARIILLEAND------ILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHhcCHHHHHHHHHHhhh------cCCccHHHHHHHHHHHHhCC
Confidence               2336789999999999986      55667777888887766555

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.29  E-value=25  Score=27.87  Aligned_cols=14  Identities=7%  Similarity=0.086  Sum_probs=7.2

Q ss_pred             cCChHHHHHHHHHh
Q 018924           61 ASDHEGIDKILTMM   74 (349)
Q Consensus        61 ~~~~~~a~~~~~~~   74 (349)
                      .+.+++|-+++.+.
T Consensus        27 ~~k~eeAadl~~~A   40 (288)
T KOG1586|consen   27 SNKYEEAAELYERA   40 (288)
T ss_pred             CcchHHHHHHHHHH
Confidence            34555555555543

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=81.20  E-value=14  Score=25.01  Aligned_cols=32  Identities=25%  Similarity=0.221  Sum_probs=13.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 018924          261 KPSVESLAACLDYFKDEGDIGGAENFIELLNDKG  294 (349)
Q Consensus       261 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  294 (349)
                      .||...|..|-.  .+.|-.+++...+.++...+
T Consensus        68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g   99 (116)
T PF09477_consen   68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG   99 (116)
T ss_dssp             -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred             CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence            444444444332  25555555555555444443

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=80.75  E-value=7.9  Score=23.27  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924          264 VESLAACLDYFKDEGDIGGAENFIELL  290 (349)
Q Consensus       264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~  290 (349)
                      -.-...+|.++...|++++|.++++.+
T Consensus        23 ~~NhLqvI~gllqlg~~~~a~eYi~~~   49 (62)
T PF14689_consen   23 FLNHLQVIYGLLQLGKYEEAKEYIKEL   49 (62)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            333344444555555555555544444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=80.74  E-value=25  Score=27.53  Aligned_cols=179  Identities=13%  Similarity=0.038  Sum_probs=98.3

Q ss_pred             cCChHHHHHHHHHhhcCCCCCcc-HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924           61 ASDHEGIDKILTMMEADPNVALD-WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV  139 (349)
Q Consensus        61 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  139 (349)
                      .|-+.-|.--|.+..   .+.|+ ..+||-|.-.+...|+++.|.+.|+...+.  .|.-..+...-.-++.--|++.-|
T Consensus        78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA  152 (297)
T COG4785          78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA  152 (297)
T ss_pred             hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence            344444444444444   33343 567888888999999999999999998774  333312222222234456888888


Q ss_pred             HHHHHHHHhhccCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH-HHHHHHhcCcHHHHHHHHHHHH
Q 018924          140 LRIWELYKKAVKVLN--NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF-LIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       140 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                      .+-+..--...+.|+  ..|--++.   ..-++.+|..-+.+--+   ..|..-|.. ++..|...=..+.   +++++.
T Consensus       153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~  223 (297)
T COG4785         153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLK  223 (297)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHH
Confidence            776662222223232  23333332   33456666554433221   223333433 3333332222222   233333


Q ss_pred             HcCc------ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          217 LKGR------EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       217 ~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...-      ..=..||-.+.+-+...|+.++|..+|+-.+..
T Consensus       224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            2110      012347778888999999999999999998865

>smart00028 TPR Tetratricopeptide repeats

Probab=80.60  E-value=3.4  Score=19.69  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=14.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      |..+...+...|+++.|...++..+
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4445555555666666666665554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=80.58  E-value=9.5  Score=22.91  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ++...++++.+...  +-|-.-.-.+|.+|...|++++|.++++.+...
T Consensus         6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~   52 (62)
T PF14689_consen    6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD   52 (62)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44445555555432  123444455677788888888888887777653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.52  E-value=16  Score=29.37  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELL  290 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  290 (349)
                      .-.+..-|...|++++|.++|+.+...+....=..+...+...+..++.+.|+.+....+-=++
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456677888999999999999986543322223445667777888888888888877664443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.50  E-value=6.7  Score=24.84  Aligned_cols=47  Identities=13%  Similarity=0.148  Sum_probs=33.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHH
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~  287 (349)
                      ..++.++|+..|+.+++.     ...|.  -.++..++.+++..|++.++.++-
T Consensus        18 ~~~~~~~Al~~W~~aL~k-----~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEK-----ITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888888875     33332  356777888888888888877653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.25  E-value=6.9  Score=32.70  Aligned_cols=83  Identities=17%  Similarity=0.068  Sum_probs=57.0

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----  202 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  202 (349)
                      .+.|.+.|.+++|+..|.....-.+-+.+++..-..+|.+...+..|+.-.......+        ...+.+|.+.    
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~AR  175 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQAR  175 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHHH
Confidence            3567889999999999983333334488889999999999999988887776665422        1244555554    


Q ss_pred             ---CcHHHHHHHHHHHHH
Q 018924          203 ---GLLEKAENLVNHEKL  217 (349)
Q Consensus       203 ---~~~~~a~~~~~~~~~  217 (349)
                         |...+|.+-++....
T Consensus       176 ~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  176 ESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             HHHhhHHHHHHhHHHHHh
Confidence               555666665555555

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.21  E-value=52  Score=30.79  Aligned_cols=184  Identities=11%  Similarity=0.028  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHH-CCCCCCHH--HHHHHHHHHH-hcCChHHHHHHHHHhhcCCCCCccHH-----HHHHHHHHHhhcCcHH
Q 018924           31 KLDSLMHEMEE-NGITYDRY--TYCTRLSAYA-DASDHEGIDKILTMMEADPNVALDWV-----IYATVGNGYGKVGLLD  101 (349)
Q Consensus        31 ~a~~~~~~m~~-~~~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~  101 (349)
                      .|+..++-+.+ ..++|...  ++-.+...+. ...+++.|+..+++.. ...-.++..     ....++..+.+.+...
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            35566666663 33444333  5555666665 6788999999998764 222112222     1235677777777666


Q ss_pred             HHHHHHHHHHHhhcCCcc---hhhHHHH-HHHHhhcCCHHHHHHHHH-HH-Hhh--ccCChhhHHHHHHHHh--ccCCHH
Q 018924          102 KALAMLKKSEEQIKGAKV---NSAYNVI-LTLYGKYGKKDDVLRIWE-LY-KKA--VKVLNNGYRNVISSLL--KLDDLE  171 (349)
Q Consensus       102 ~a~~~~~~~~~~~~~~~~---~~~~~~l-~~~~~~~~~~~~a~~~~~-~~-~~~--~~~~~~~~~~li~~~~--~~~~~~  171 (349)
                       |...+++..+.--....   ...+..+ +..+...+++..|.+.++ .. ...  ..|-..++..++.+..  +.+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             99988887664322112   0222333 222333489999999998 22 222  2233344555555544  556667


Q ss_pred             HHHHHHHHHHhcCC---------CCCcchHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQAL---------CYDTRIPNFLIDVYC--RNGLLEKAENLVNHEK  216 (349)
Q Consensus       172 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~  216 (349)
                      .+.+.++.+.....         .|-..+|..+++.++  ..|+++.+...++++.
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777776643211         233455666666554  4677777777666554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]

Probab=80.17  E-value=11  Score=27.50  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=28.1

Q ss_pred             hhhhCCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 018924            4 MRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS   62 (349)
Q Consensus         4 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~   62 (349)
                      +++.|++++..= ..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus        12 lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G   69 (145)
T COG0735          12 LKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG   69 (145)
T ss_pred             HHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence            344455444332 2344555555555555666665555554444444444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 3e-10
 Identities = 57/398 (14%), Positives = 111/398 (27%), Gaps = 93/398 (23%)

Query: 11  RTTVVYNSMLKLYYK-TGNFEKLDSLMHEME---ENGITYDRYTYCTRLSAYA-----DA 61
               V   + KL Y+   N+         ++    +     R    ++          + 
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 62  SDHEGID------KILTMMEADPNVALDWVIYATVGN--------GYGK---VGLLDKAL 104
            + +  +      KIL +      V  D++  AT  +                 LL K L
Sbjct: 254 QNAKAWNAFNLSCKIL-LTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 105 AMLKKSE-EQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS 163
               +    ++     N      L++  +   +D +   W+ +K    V  +    +I S
Sbjct: 312 DCRPQDLPREVL--TTNP---RRLSIIAES-IRDGLAT-WDNWKH---VNCDKLTTIIES 361

Query: 164 LLKLDDLESAEK--------IFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHE 215
              L+ LE AE         +F             IP  L+ +   + +      +VN  
Sbjct: 362 --SLNVLEPAEYRKMFDRLSVFPP--------SAHIPTILLSLIWFDVIKSDVMVVVN-- 409

Query: 216 KLKGREIHVKSW----YYLATGY-------RQNSQIHKAVEAMKKVLAAYQTLVKWKPSV 264
           KL    +  K        + + Y            +H+       ++  Y     +    
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR------SIVDHYNIPKTFDSDD 463

Query: 265 ESLAACLDYF--------KDEGDIGGAENFIELLNDKGFIPTDLQDKLLD---NVQNGKS 313
                   YF        K+         F  +  D  F+    + K+           S
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL----EQKIRHDSTAWNASGS 519

Query: 314 NLETLREL--YGNSLAGNEETLSGPEGDTSDLIEEKAH 349
            L TL++L  Y   +  N+           D + +   
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 57/409 (13%), Positives = 114/409 (27%), Gaps = 125/409 (30%)

Query: 28  NFEKL-DSLMHEMEENGITYDRYTYCTRLSAYADAS-----------DHEGIDKILTMME 75
           N++ L   +  E  +  +    Y    R   Y D              +  + + L  + 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 76  ADPNVALDWVIYATVG-NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI-LTLYGKY 133
              NV +D       G  G GK  +   AL +    + Q K       + +  L L    
Sbjct: 149 PAKNVLID-------GVLGSGKTWV---ALDVCLSYKVQCK-----MDFKIFWLNL-KNC 192

Query: 134 GKKDDVLRI-WELYKKAVKVLNNG--------------------------YRNVISSLLK 166
              + VL +  +L  +      +                           Y N    LL 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLV 249

Query: 167 LDDLESAEKIFEEWESQALC------YDTRIPNFL-------IDVYCRNGLLEKAENL-- 211
           L ++++A K +  +     C         ++ +FL       I +   +  L   E    
Sbjct: 250 LLNVQNA-KAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 212 ----VN-------HEKLKG------------REIHVKSW-YYLATGYRQNSQIHKAVEAM 247
               ++        E L              R+  + +W  +    +    ++   +E+ 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWK---HVNCDKLTTIIESS 362

Query: 248 KKVL------AAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKG------- 294
             VL        +  L  + PS       L     +         +  L+          
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 295 ----FIPTDLQDKLLDNVQNGKSNLETLRELYGNSLAGNEETLSGPEGD 339
                IP  +  +L   ++N  +   ++ + Y      + + L  P  D
Sbjct: 423 ESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.4 bits (142), Expect = 9e-10
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 6/221 (2%)

Query: 1   MQKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD 60
               R      T  +YN+++  + + G F++L  ++  +++ G+T D  +Y   L     
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212

Query: 61  ASDHEG-IDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
                G I++ L  M  +        ++  V         + KA+  +K +         
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQA--LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270

Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEE 179
               +    L      KD  +   +L+     +     + +   L     + S EK    
Sbjct: 271 PVNTS---KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLP 327

Query: 180 WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR 220
            +       T               L + +N +  E  +GR
Sbjct: 328 SKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGR 368

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 24/263 (9%), Positives = 65/263 (24%), Gaps = 10/263 (3%)

Query: 2   QKMRDLGLARTTVVYNSMLKLYYKTGNFEKLDSL---MHEMEENGITYDRYTYCTRLSAY 58
            +     L+       +  K    T        L    H   +         Y   +  +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 59  ADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK 118
           A     + +  +L M++    +  D + YA      G+       +    +   Q     
Sbjct: 176 ARQGAFKELVYVLFMVKDA-GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234

Query: 119 VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE 178
                 V+L+   +      V ++   +    ++      + +   +   D   +     
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294

Query: 179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV----NHEKLKGREIHVKSWYYLATGY 234
                            +++  R  ++   +  +         K  +     W       
Sbjct: 295 LPLKT--LQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA 352

Query: 235 RQNSQIHKAVEAMKKVLAAYQTL 257
            + ++     E  +   + Y  L
Sbjct: 353 LRETKNRLEREVYEGRFSLYPFL 375

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 32/273 (11%), Positives = 78/273 (28%), Gaps = 31/273 (11%)

Query: 10  ARTTVVYNSMLKLYYKTGNFEK----LDSLMHEMEENGITYDRY---TYCTRLSAYADAS 62
            R+ V + +   +YY  G        +D + H  E+    Y        C          
Sbjct: 91  IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG 150

Query: 63  D---HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV 119
                         +E  P         A              A+  L+++   +     
Sbjct: 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-LNPDNQ 209

Query: 120 NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV---LNNGYRNVISSLLKLDDLESAEKI 176
                + L L+    + ++     +L ++A++    + +  R+      + D+ + A ++
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269

Query: 177 FEE-----------WESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNH------EKLKG 219
            ++                 CY  ++   +           K   L+ H      +  + 
Sbjct: 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 220 REIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA 252
            +   +    LA+ +    Q  +A    +K  +
Sbjct: 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.74
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.73
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.72
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.72
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.58
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.48
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.45
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.39
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.3
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.21
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.2
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.15
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.1
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.03
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.01
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.0
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.99
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.98
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.96
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.96
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.94
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.91
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.87
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.83
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.83
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.79
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.71
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.69
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.69
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.67
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.66
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.65
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.57
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.51
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.46
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.36
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.35
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.25
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.16
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.94
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.91
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.89
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.68
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.46
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.34
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.22
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.17
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.14
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.09
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.93
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.86
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.84
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.68
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.46
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.19
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.07
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.02
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.91
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.59
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.1
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.98
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.96
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.87
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.78
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.56
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.05
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.89
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.77
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.68
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.18
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	89.86
2p58_C	116	Putative type III secretion protein YSCG; type III	89.18
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.1
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	88.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.34
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	86.63
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	86.1
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.91
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	84.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.12
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.57
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.45
2zu6_B	307	Programmed cell death protein 4; protein-protein c	81.38
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	80.82
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.11

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.2e-34  Score=253.35  Aligned_cols=199  Identities=12%  Similarity=0.120  Sum_probs=166.9

Q ss_pred             hhhhhhCCCccH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHH
Q 018924            2 QKMRDLGLARTT-VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD---------HEGIDKIL   71 (349)
Q Consensus         2 ~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~   71 (349)
                      .++++.++.+++ ..++.+|++|++.|++++|+++|++|.+.|++||..||+.||.+|++.+.         +++|.++|
T Consensus        14 ~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf   93 (501)
T 4g26_A           14 RKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF   93 (501)
T ss_dssp             ----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence            356666766544 45788899999999999999999999999999999999999999887654         67888999


Q ss_pred             HHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhc
Q 018924           72 TMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAV  150 (349)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~  150 (349)
                      ++|. ..|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+. .+|+++|.+|++.|++++|.++|+ |...|+
T Consensus        94 ~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~  171 (501)
T 4g26_A           94 KQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEV  171 (501)
T ss_dssp             HHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9998 7788899999999999999999999999999999988888888 899999999999999999999998 888899


Q ss_pred             cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      .||..||+++|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999988899999999888888764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.9e-34  Score=250.90  Aligned_cols=185  Identities=15%  Similarity=0.092  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC---------HHHHHHHHH-HHHhhccCChh
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK---------KDDVLRIWE-LYKKAVKVLNN  155 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~-~~~~~~~~~~~  155 (349)
                      .++.+|++|++.|++++|.++|++|.+.|+.|+. .+||+||.+|++.+.         .+.|.++|+ |...|+.||..
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            3455555555555555555555555555555555 555555555554432         456666666 66666666766


Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      ||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            77777777777777777777777777666677777777777777777777777777777777777777777777777777


Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHh
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKD  276 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~  276 (349)
                      +.|++++|.++|++|.+.     +..|+..||+.++..|..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~-----g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDL-----VRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHH-----TSSBCHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHh-----CCCcCHHHHHHHHHHHhc
Confidence            777777777777777666     667777777766666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-30  Score=235.63  Aligned_cols=315  Identities=10%  Similarity=-0.024  Sum_probs=195.0

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---------------------------------
Q 018924            8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTR---------------------------------   54 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---------------------------------   54 (349)
                      |.+++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+                                 
T Consensus       195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (597)
T 2xpi_A          195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS  273 (597)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence            55668999999999999999999999999999876422 22222211                                 


Q ss_pred             -----HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc--------------
Q 018924           55 -----LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK--------------  115 (349)
Q Consensus        55 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------------  115 (349)
                           +..|.+.|++++|.++|+++. +.  +++..+|+.++.+|.+.|++++|.++|+++.+.++              
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  350 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSIN-GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH  350 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTST-TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhh-cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence                 233344555566666665555 22  35555566666666666666666666665554322              


Q ss_pred             ------------------CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924          116 ------------------GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF  177 (349)
Q Consensus       116 ------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  177 (349)
                                        .|+...+|+.++..|.+.|++++|.++|+......+.+..+|+.++..|.+.|++++|.++|
T Consensus       351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  430 (597)
T 2xpi_A          351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY  430 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                              22222456666666666666666666666222233334556666666666666666666666


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 018924          178 EEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTL  257 (349)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  257 (349)
                      +++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+..+ .
T Consensus       431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  507 (597)
T 2xpi_A          431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVK-K  507 (597)
T ss_dssp             HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-c
Confidence            6666543 345566666666666666666666666666654432 556666677777777777777777776665311 1


Q ss_pred             ccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcc
Q 018924          258 VKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEE  331 (349)
Q Consensus       258 ~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~  331 (349)
                      .+..|+  ..+|..+..+|.+.|++++|.++++++.+.++.+..+|..+. .|.+.|  ++|.+.|+++.+.  .|+..
T Consensus       508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~  584 (597)
T 2xpi_A          508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI  584 (597)
T ss_dssp             SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence            133555  566677777777777777777777776666666666666666 666666  6677777766653  45443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.2e-29  Score=224.87  Aligned_cols=287  Identities=14%  Similarity=0.092  Sum_probs=256.3

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      +++..+|+.++..|.+.|++++|+.+|+++.+.+.. +..++..++.++.+.|++++|..+++++. +.. +.+..+|+.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~  378 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLV-DRH-PEKAVTWLA  378 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhC-cccHHHHHH
Confidence            589999999999999999999999999999987643 77899999999999999999999999997 433 367889999


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      ++.+|.+.|++++|.++|+++.+.  .|+...+|+.++.+|.+.|++++|+++|+......+.+..+|..++.+|.+.|+
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  456 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN  456 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence            999999999999999999999874  445447999999999999999999999994445556688899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc----Ccccc--hhhHHHHHHHHhcCCCHHHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK----GREIH--VKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a  243 (349)
                      +++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|
T Consensus       457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  535 (597)
T 2xpi_A          457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA  535 (597)
T ss_dssp             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999864 557889999999999999999999999999876    55677  78999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhh
Q 018924          244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNV  308 (349)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~  308 (349)
                      .++|+++.+.     + +.+..+|..+..+|.+.|++++|.+.|+++.+..|.+...|..+. .|.
T Consensus       536 ~~~~~~~~~~-----~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          536 IDALNQGLLL-----S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHH-----S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHh-----C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999975     3 337899999999999999999999999999999888888887777 654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.3e-26  Score=198.69  Aligned_cols=308  Identities=15%  Similarity=0.106  Sum_probs=233.8

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      +.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.++++. +.+. .+...+..
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~  140 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSD  140 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHH
Confidence            4466777777777888888888888887777653 2244567777777777888888887777776 3222 33445666


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      +...+...|++++|.+.|+++.+.  .|+...+|..+...+...|++++|...|+......+.+...|..+...+...|+
T Consensus       141 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  218 (388)
T 1w3b_A          141 LGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI  218 (388)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            777777778888888888877764  344446778888888888888888888884333344455677777888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 018924          170 LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKK  249 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  249 (349)
                      +++|...+++..+.. +.+..++..+..+|.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.|++
T Consensus       219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  296 (388)
T 1w3b_A          219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888777653 345677888888899999999999999998886543 566788888899999999999999999


Q ss_pred             HHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCC
Q 018924          250 VLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSL  326 (349)
Q Consensus       250 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~  326 (349)
                      +.+.      .+.+..++..+...+...|++++|...++++.+..|.+...+..+. .+.+.|  ++|...|+++.+  +
T Consensus       297 al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~  368 (388)
T 1w3b_A          297 ALRL------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--I  368 (388)
T ss_dssp             HHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--T
T ss_pred             HHhh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence            8864      2446788888888999999999999999999888777788888888 888888  889999999876  4


Q ss_pred             CCCccc
Q 018924          327 AGNEET  332 (349)
Q Consensus       327 ~p~~~t  332 (349)
                      .|+...
T Consensus       369 ~p~~~~  374 (388)
T 1w3b_A          369 SPTFAD  374 (388)
T ss_dssp             CTTCHH
T ss_pred             CCCCHH
Confidence            676543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.8e-25  Score=195.19  Aligned_cols=308  Identities=12%  Similarity=0.018  Sum_probs=261.2

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      +.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...++++. +.+. .+..++..
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~   99 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI-QLKM-DFTAARLQ   99 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CcHHHHHH
Confidence            3467889999999999999999999999999864 3478899999999999999999999999988 4443 56788899


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcch---hhHHHH------------HHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVN---SAYNVI------------LTLYGKYGKKDDVLRIWELYKKAVKVLN  154 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (349)
                      +..+|.+.|++++|.+.|+++.+.  .|+..   .++..+            ...+...|++++|+..|+......+.+.
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  177 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA  177 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999874  45543   455555            4458899999999999995455556677


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHH----
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL----  230 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----  230 (349)
                      ..+..++.+|...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++....+. +...+..+    
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~  255 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence            889999999999999999999999998864 556788999999999999999999999999975432 34444444    


Q ss_pred             --------HHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          231 --------ATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       231 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                              ...|...|++++|.++|+++++.       .|+     ...+..+..++.+.|++++|...++.+....+.+
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  328 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKT-------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN  328 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence                    78899999999999999999965       454     4578888999999999999999999999888888


Q ss_pred             chhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccc
Q 018924          298 TDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETL  333 (349)
Q Consensus       298 ~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~  333 (349)
                      ...|..+. ++...|  ++|...|++..+  +.|+....
T Consensus       329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~  365 (450)
T 2y4t_A          329 VNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQI  365 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHH
Confidence            88999999 999999  899999999987  46766543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=1.2e-24  Score=186.45  Aligned_cols=304  Identities=10%  Similarity=0.035  Sum_probs=262.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+++. +... .+..+|..+.
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~  108 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKP-DFIDGYINLA  108 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCc-chHHHHHHHH
Confidence            56677788888999999999999999988764 4477899999999999999999999999987 4332 4566789999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      .++.+.|++++|.+.|+++.+.  .|+...++..+...+...|++++|.+.|+......+.+..+|..+...+...|+++
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  186 (388)
T 1w3b_A          109 AALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999875  45554688899999999999999999999444445556788999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +|...|+++.+.+ +.+...+..+...+...|++++|...|++.....+. +..++..+...|...|++++|.+.|+++.
T Consensus       187 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al  264 (388)
T 1w3b_A          187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999864 445678889999999999999999999999886543 57789999999999999999999999999


Q ss_pred             HHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCC
Q 018924          252 AAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLA  327 (349)
Q Consensus       252 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~  327 (349)
                      +.       .| +..++..+...+.+.|++++|...++++.+..+.+...|..+. .+.+.|  ++|...++++.+.  .
T Consensus       265 ~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~  335 (388)
T 1w3b_A          265 EL-------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--F  335 (388)
T ss_dssp             HT-------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--C
T ss_pred             hh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            53       45 5778999999999999999999999999998888889999999 999999  8999999999764  5


Q ss_pred             CCcc
Q 018924          328 GNEE  331 (349)
Q Consensus       328 p~~~  331 (349)
                      |+..
T Consensus       336 p~~~  339 (388)
T 1w3b_A          336 PEFA  339 (388)
T ss_dssp             TTCH
T ss_pred             CCcH
Confidence            6654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=1.4e-22  Score=171.22  Aligned_cols=319  Identities=11%  Similarity=0.009  Sum_probs=263.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      |+..|..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|...++++. +... .+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI-ALKM-DFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CcchHHHHHH
Confidence            567888999999999999999999999998743 367799999999999999999999999987 4332 4568889999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCC---cchhhHHHH------------HHHHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGA---KVNSAYNVI------------LTLYGKYGKKDDVLRIWELYKKAVKVLNNG  156 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  156 (349)
                      .++...|++++|...|++..+.  .|   +....+..+            ...+...|++++|...++......+.+...
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            9999999999999999999874  44   333555555            588899999999999999555556667788


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHH--------
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWY--------  228 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------  228 (349)
                      +..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+..+. +...+.        
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence            9999999999999999999999999864 556788999999999999999999999999886533 233332        


Q ss_pred             ----HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-H----HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          229 ----YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-V----ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       229 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                          .+...+...|++++|...++++.+.       .|+ .    ..+..+..++...|++++|...++.+.+..+.+..
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  307 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKT-------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN  307 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence                2366789999999999999999975       343 2    23555778899999999999999999998888888


Q ss_pred             hHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCCCChhHHHHH
Q 018924          300 LQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPEGDTSDLIEE  346 (349)
Q Consensus       300 ~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~  346 (349)
                      .|..+. .+.+.|  ++|...|++..+.  .|+.......+..+...+++
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHH
Confidence            999999 999999  8999999999874  68877665555555555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=8.5e-22  Score=171.93  Aligned_cols=282  Identities=12%  Similarity=0.035  Sum_probs=236.8

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH---HH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW---VI   86 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~   86 (349)
                      +.+..+|..+...+.+.|++++|+..|+++.+.+. .+..++..+..++.+.|++++|...|+++. +.+. .+.   ..
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~  133 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNP-SENEEKEA  133 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCC-CHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CChhhHHH
Confidence            34788999999999999999999999999998753 367799999999999999999999999998 5433 333   55


Q ss_pred             HHHH------------HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924           87 YATV------------GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN  154 (349)
Q Consensus        87 ~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (349)
                      +..+            ...+.+.|++++|...|+++.+.  .|+...++..++.+|...|++++|...|+......+.+.
T Consensus       134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  211 (450)
T 2y4t_A          134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT  211 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            5555            44589999999999999999875  444447899999999999999999999995445556677


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH------------HHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL------------IDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                      .++..++..+...|++++|...++++.+.. +.+...+..+            ...+...|++++|...|+++.+..+. 
T Consensus       212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-  289 (450)
T 2y4t_A          212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-  289 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence            899999999999999999999999998753 3344445444            78899999999999999999985432 


Q ss_pred             c----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          223 H----VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       223 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      +    ...|..+...+.+.|++++|++.++++.+.       .| +...+..+..+|...|++++|...++.+.+..|.+
T Consensus       290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            2    347888999999999999999999999864       45 68899999999999999999999999999987777


Q ss_pred             chhHHHHh
Q 018924          298 TDLQDKLL  305 (349)
Q Consensus       298 ~~~~~~l~  305 (349)
                      ...+..+.
T Consensus       363 ~~~~~~l~  370 (450)
T 2y4t_A          363 QQIREGLE  370 (450)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=1e-21  Score=164.06  Aligned_cols=292  Identities=15%  Similarity=0.033  Sum_probs=244.9

Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924            8 GLARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus         8 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      +.+.+...+..+...+...|++++|+++|+++.+... .+...+..++.++...|++++|..+++++. +... .+...+
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~   93 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLV-DLYP-SNPVSW   93 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSTHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHH
Confidence            3455677788899999999999999999999988743 355677778889999999999999999987 4333 456778


Q ss_pred             HHHHHHHhhcC-cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           88 ATVGNGYGKVG-LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        88 ~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      ..+...+...| ++++|.+.|++..+.  .|+...+|..+...+...|++++|...++......+.+...+..+...+..
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            88999999999 999999999999875  344447899999999999999999999995445455566778889999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc--------ccchhhHHHHHHHHhcCC
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR--------EIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~~  238 (349)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+...        ..+..++..+...+...|
T Consensus       172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            999999999999998864 55678889999999999999999999999886421        234568899999999999


Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hh-hhcC
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DN-VQNG  311 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~-~~~g  311 (349)
                      ++++|.+.++++.+.     . +.+...+..+...+...|++++|...++++.+..+.+...+..+. ++ ...|
T Consensus       251 ~~~~A~~~~~~a~~~-----~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g  319 (330)
T 3hym_B          251 KYAEALDYHRQALVL-----I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG  319 (330)
T ss_dssp             CHHHHHHHHHHHHHH-----S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHhh-----C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence            999999999999965     2 225678889999999999999999999999998888888888888 77 4455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-21  Score=173.02  Aligned_cols=271  Identities=11%  Similarity=-0.013  Sum_probs=151.9

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC----------
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV----------   80 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------   80 (349)
                      |+..+|..+..++.+.|++++|+..|+++.+.+. .+..+|..+..++...|++++|...|+++. ..+.          
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~  114 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLS-LNGDFNDASIEPML  114 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSSSCCGGGTHHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCccchHHHHH
Confidence            7888888888888899999999999988887642 356688888888888888888888888775 2221          


Q ss_pred             --------------------------------------------------------------------CccHHHHHHHHH
Q 018924           81 --------------------------------------------------------------------ALDWVIYATVGN   92 (349)
Q Consensus        81 --------------------------------------------------------------------~~~~~~~~~li~   92 (349)
                                                                                          +.+...+..+..
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (514)
T 2gw1_A          115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL  194 (514)
T ss_dssp             HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence                                                                                001222222333


Q ss_pred             HHhh---cCcHHHHHHHHHHHHHhh---c---------CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhH
Q 018924           93 GYGK---VGLLDKALAMLKKSEEQI---K---------GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY  157 (349)
Q Consensus        93 ~~~~---~g~~~~a~~~~~~~~~~~---~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  157 (349)
                      .+..   .|++++|...|+++.+..   .         .|....++..+...+...|++++|...++...... |+...+
T Consensus       195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~  273 (514)
T 2gw1_A          195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSY  273 (514)
T ss_dssp             HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred             HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-ccHHHH
Confidence            3332   666777777776665510   0         12222456666666666666666666666222211 224455


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      ..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+..+. +...+..+...+...
T Consensus       274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  351 (514)
T 2gw1_A          274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRE  351 (514)
T ss_dssp             HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHc
Confidence            555555555566555555555555432 233444555555555555555555555555543322 333444455555555


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      |++++|.++++++.+.      .+.+...+..+...+...|++++|...++.+..
T Consensus       352 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRK------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             TCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5555555555555442      122333444444444444444444444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.2e-21  Score=168.78  Aligned_cols=299  Identities=7%  Similarity=-0.069  Sum_probs=249.3

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      ....|..+...+.+.|++++|+..|+++.+.+  |+..+|..+..++.+.|++++|...++++. +.+. .+..+|..+.
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~   80 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELKP-DYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCS-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-ccCh-HHHHHHHHHH
Confidence            45678888999999999999999999999875  789999999999999999999999999988 4443 5678899999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCC------------------------------------------------------
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGA------------------------------------------------------  117 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------------------------------  117 (349)
                      .++.+.|++++|...|+++....+..                                                      
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            99999999999999999987654311                                                      


Q ss_pred             -----------------------cchhhHHHHHHHHhh---cCCHHHHHHHHH-HHHh----h--c-------cCChhhH
Q 018924          118 -----------------------KVNSAYNVILTLYGK---YGKKDDVLRIWE-LYKK----A--V-------KVLNNGY  157 (349)
Q Consensus       118 -----------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~-~~~~----~--~-------~~~~~~~  157 (349)
                                             +....+......+..   .|++++|...|+ ....    .  .       +.+..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence                                   111233334444443   899999999999 3331    1  1       3345678


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC
Q 018924          158 RNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN  237 (349)
Q Consensus       158 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  237 (349)
                      ..+...+...|++++|...++.+.+..  |+...+..+...|...|++++|...++++.+..+. +...+..+...+...
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHh
Confidence            889999999999999999999998865  33778889999999999999999999999886543 677889999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924          238 SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS  313 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~  313 (349)
                      |++++|...++++.+.       .| +...+..+...+...|++++|...++.+....+.+...|..+. .+.+.|  ++
T Consensus       318 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKEL-------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             TCTTHHHHHHHHHHHT-------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHh-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence            9999999999999864       34 5678888999999999999999999999988887888899999 999988  89


Q ss_pred             hHHHHHHHHhC
Q 018924          314 NLETLRELYGN  324 (349)
Q Consensus       314 a~~~~~~m~~~  324 (349)
                      |...++++.+.
T Consensus       391 A~~~~~~a~~~  401 (514)
T 2gw1_A          391 ALKQYDLAIEL  401 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=7.1e-20  Score=163.37  Aligned_cols=308  Identities=13%  Similarity=0.054  Sum_probs=236.8

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC------------
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADP------------   78 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------   78 (349)
                      .+..+|..+..++.+.|++++|++.|+++.+.+. .+..++..+..++...|++++|...|+.+....            
T Consensus        57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  135 (537)
T 3fp2_A           57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE  135 (537)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence            4678888888999999999999999999887653 366788888888888888888877664331000            


Q ss_pred             --------------------------------------------------------------------------------
Q 018924           79 --------------------------------------------------------------------------------   78 (349)
Q Consensus        79 --------------------------------------------------------------------------------   78 (349)
                                                                                                      
T Consensus       136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~  215 (537)
T 3fp2_A          136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN  215 (537)
T ss_dssp             HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHH
Confidence                                                                                            


Q ss_pred             --------------CCCcc--------HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           79 --------------NVALD--------WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        79 --------------~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                                    ...|+        ..++..+...+...|++++|.+.|++..+.  .|+. .+|..+...+...|++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTP-NSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-HHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCc-hHHHHHHHHHHHhcCH
Confidence                          00111        123455666777788888898888888875  3444 7888888899999999


Q ss_pred             HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924          137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                      ++|...++......+.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  371 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETK  371 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999985445555667788888999999999999999999988764 4456788889999999999999999999988


Q ss_pred             HcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc----------CChhhHHHH
Q 018924          217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE----------GDIGGAENF  286 (349)
Q Consensus       217 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------g~~~~a~~~  286 (349)
                      +..+. +...+..+...+...|++++|.+.|+++.+..+...........+......+...          |++++|...
T Consensus       372 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~  450 (537)
T 3fp2_A          372 LKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL  450 (537)
T ss_dssp             HHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred             HhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence            86543 5668888899999999999999999998876322222222333345555667777          999999999


Q ss_pred             HHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          287 IELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       287 ~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                      ++.+.+..+.+...|..+. .+.+.|  ++|.+.|++..+.
T Consensus       451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999988888888888888 999888  8999999998774

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=6.2e-19  Score=148.83  Aligned_cols=282  Identities=11%  Similarity=0.009  Sum_probs=232.5

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC--ccHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA--LDWVIYA   88 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~   88 (349)
                      .+..+|..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...+++.. +....  .+...+.
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNPSEQEEKEAES  112 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCcccChHHHHH
Confidence            3678899999999999999999999999998742 266789999999999999999999999998 43220  2344444


Q ss_pred             HH------------HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924           89 TV------------GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNG  156 (349)
Q Consensus        89 ~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  156 (349)
                      .+            ...+...|++++|.+.++++.+.  .|+...++..+...+...|++++|...++......+.+..+
T Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  190 (359)
T 3ieg_A          113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA  190 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            44            58899999999999999999885  34444789999999999999999999999555556667788


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHH------------HHHHHHHhcCcHHHHHHHHHHHHHcCcccch
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN------------FLIDVYCRNGLLEKAENLVNHEKLKGREIHV  224 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  224 (349)
                      +..+...+...|++++|...++...+.. +.+...+.            .+...+.+.|++++|...++++.+..+. +.
T Consensus       191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~  268 (359)
T 3ieg_A          191 FYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VA  268 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ch
Confidence            9999999999999999999999998754 33333333            2366788999999999999999986533 22


Q ss_pred             ----hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          225 ----KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       225 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                          ..+..+...+...|++++|.+.++++.+.       .| +...+..+...+...|++++|...++.+.+..|.+..
T Consensus       269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence                23556778999999999999999999964       45 6788999999999999999999999999998887777


Q ss_pred             hHHHHh
Q 018924          300 LQDKLL  305 (349)
Q Consensus       300 ~~~~l~  305 (349)
                      .+..+.
T Consensus       342 ~~~~l~  347 (359)
T 3ieg_A          342 IREGLE  347 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=3e-20  Score=155.14  Aligned_cols=281  Identities=8%  Similarity=-0.069  Sum_probs=233.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhH
Q 018924           44 ITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAY  123 (349)
Q Consensus        44 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  123 (349)
                      .+.+...+..+...+...|++++|.++++++. +... .+...+..++.++...|++++|...++++.+.  .|+...+|
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~   93 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVM-EKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSW   93 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHH
Confidence            44567788888999999999999999999987 4333 44456667888899999999999999999885  44444789


Q ss_pred             HHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          124 NVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       124 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      ..+...+...| ++++|...|+......+.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            99999999999 99999999995555555567789999999999999999999999998864 44567788899999999


Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc---CCCCHHHHHHHHHHHHhcCC
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK---WKPSVESLAACLDYFKDEGD  279 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~  279 (349)
                      |++++|...+++..+..+. +...+..+...+...|++++|...++++.+.......   ...+...+..+...+...|+
T Consensus       173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999986543 6788999999999999999999999999875221111   13346788999999999999


Q ss_pred             hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCccc
Q 018924          280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEET  332 (349)
Q Consensus       280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t  332 (349)
                      +++|...++.+.+..+.+...|..+. .+.+.|  ++|.+.+++..+  +.|+...
T Consensus       252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~  305 (330)
T 3hym_B          252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTF  305 (330)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchH
Confidence            99999999999998888888999999 999988  899999998876  4566544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=1.2e-20  Score=160.12  Aligned_cols=268  Identities=11%  Similarity=-0.102  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHH
Q 018924           14 VVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNG   93 (349)
Q Consensus        14 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~   93 (349)
                      ..|..+...+.+.|++++|+..|+++.+... .+..+|..+..++...|++++|...|++.. .... .+..++..+..+
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~  142 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALAVS  142 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHH
Confidence            3355555556666666666666666655432 244555556666666666666666666554 2221 334555556666


Q ss_pred             HhhcCcHHHHHHHHHHHHHhhcCCcchhhH----------HHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQIKGAKVNSAY----------NVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVI  161 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li  161 (349)
                      |...|++++|...|+++.+..+  +....+          ..+...+...|++++|...++......+.  +..++..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            6666666666666666554322  111122          22355555555566666555522222222  344555555


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      ..+...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +..+|..+...|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence            55555566666665555555542 334445555555555556666666555555554322 3445555555555555666


Q ss_pred             HHHHHHHHHHHHhcccccC------CCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          242 KAVEAMKKVLAAYQTLVKW------KPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      +|...|+++++..+...+.      ..+...|..+..++...|+.+.+..+.+
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            6665555555441111110      0013445555555555555555554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=6.6e-20  Score=155.61  Aligned_cols=256  Identities=11%  Similarity=0.015  Sum_probs=120.2

Q ss_pred             CChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHH
Q 018924           27 GNFEKLDS-LMHEMEENGI---TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDK  102 (349)
Q Consensus        27 g~~~~a~~-~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  102 (349)
                      |++++|++ .|++......   ..+...+..+...+...|++++|...++++. +... .+..++..+..++...|++++
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence            45555555 5554433211   0122344455555555555555555555554 2222 344455555555555555555


Q ss_pred             HHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH---------------HHHHHhcc
Q 018924          103 ALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN---------------VISSLLKL  167 (349)
Q Consensus       103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~  167 (349)
                      |.+.|+++.+.  .|+...++..+...+...|++++|...++......+.+...+..               .+..+...
T Consensus       117 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            55555555543  22222455555555555555555555555222222222211111               12222255


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      |++++|...++++.+..... +..++..+...|...|++++|...|+++.+..+. +...|..+...+...|++++|.+.
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555432111 2444555555555555555555555555543321 344555555555555555555555


Q ss_pred             HHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          247 MKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      |+++++.      .+.+...+..+..+|.+.|++++|...++.+...
T Consensus       274 ~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          274 YRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5555543      2344455555555555555555555555555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=2.1e-20  Score=158.72  Aligned_cols=269  Identities=10%  Similarity=-0.096  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++. +.+. .+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~l~~  140 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCL-ELKP-DNQTALMALAV  140 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-hcCC-CCHHHHHHHHH
Confidence            4567788888999999999999999998874 3366788888889999999999999998887 4333 46778888899


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH---------------HHHHHhhcCCHHHHHHHHHHHHhhccC--Chh
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV---------------ILTLYGKYGKKDDVLRIWELYKKAVKV--LNN  155 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~  155 (349)
                      ++...|++++|.+.|+++....+...  ..+..               .+..+...|++++|...|+......+.  +..
T Consensus       141 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  218 (368)
T 1fch_A          141 SFTNESLQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  218 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTG--GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence            99999999999999999887543332  33321               133344888999999999833333333  467


Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      ++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+ .+...+..+...|.
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~  296 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            88888889999999999999999888764 44567888888899999999999999998887653 25678888888999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCC-----CCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWK-----PSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      ..|++++|...|+++.+..+...+..     ....+|..+..++...|+.++|..+++
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            99999999999999886522111110     015788888888889999998887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=1.5e-19  Score=150.69  Aligned_cols=273  Identities=10%  Similarity=-0.103  Sum_probs=216.8

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+...+...|++++|..+|+++.+... .+..++..+..++...|++++|...++++. +... .+..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDP-KDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCc-CCHHHHHHHH
Confidence            455677888899999999999999999988743 367788899999999999999999999987 4333 5677888999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH--------------HH-HHhhcCCHHHHHHHHHHHHhhccCChhh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI--------------LT-LYGKYGKKDDVLRIWELYKKAVKVLNNG  156 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~  156 (349)
                      ..+...|++++|.+.++++.+..  |.....+..+              .. .+...|++++|...++......+.+...
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  174 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL  174 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence            99999999999999999998753  3332345444              33 4778899999999999544555567788


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      +..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...|..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence            8999999999999999999999988764 445778888999999999999999999998886543 57788889999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcccccCCC------CHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          237 NSQIHKAVEAMKKVLAAYQTLVKWKP------SVESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                      .|++++|.+.++++....+...+...      +...+..+..++.+.|+.++|..+++...
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999999999999875111101000      46788888999999999999998886443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.86  E-value=5.7e-19  Score=144.56  Aligned_cols=259  Identities=13%  Similarity=0.068  Sum_probs=210.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDR--YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV   97 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (349)
                      |+.....|+++.|+..++.....  .|+.  .....+.++|...|+++.|+..++    .. -+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~----~~-~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK----PS-SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC----TT-SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc----cc-CChhHHHHHHHHHHHcCC
Confidence            45567789999999998876543  3443  355667889999999999886543    22 347888899999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924           98 GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF  177 (349)
Q Consensus        98 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  177 (349)
                      |+.++|++.++++...+..|+....+..+...+...|++++|++.++.     +.+...+..++..+.+.|++++|.+.+
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999987655576657788888999999999999999984     567778999999999999999999999


Q ss_pred             HHHHhcCCCCCcchH---HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          178 EEWESQALCYDTRIP---NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       178 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                      +.+.+..  |+....   ..++..+...|++++|..+|+++.+..+ .+...|+.+..++.+.|++++|.+.|++++.. 
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-  229 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-  229 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            9998864  554222   2233444456999999999999998754 47888999999999999999999999999965 


Q ss_pred             cccccCCC-CHHHHHHHHHHHHhcCChhh-HHHHHHHHhhCCCCCchh
Q 018924          255 QTLVKWKP-SVESLAACLDYFKDEGDIGG-AENFIELLNDKGFIPTDL  300 (349)
Q Consensus       255 ~~~~~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~  300 (349)
                            .| +..++..++..+...|+.++ +.++++++.+..|.++..
T Consensus       230 ------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          230 ------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence                  55 67889999999999999976 678999998887766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=1.3e-19  Score=153.82  Aligned_cols=260  Identities=13%  Similarity=0.003  Sum_probs=207.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +...+..+...+.+.|++++|...|+++. .... .+..+|..+..+|.+.|++++|.+.|++..+.  .|+...+|..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  139 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI-LQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL  139 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence            34568889999999999999999999987 4333 56888999999999999999999999999885  45544799999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhh----------HHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCcchHHHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNG----------YRNVISSLLKLDDLESAEKIFEEWESQALC-YDTRIPNFL  195 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l  195 (349)
                      ..+|...|++++|...|+......+.+...          +..+...+...|++++|...++++.+.... ++..++..+
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            999999999999999999333222222222          334588899999999999999999986422 157789999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYF  274 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~  274 (349)
                      ...|...|++++|...|+++.+..+. +..+|..+...|...|++++|.+.|+++++.       .| +..++..+..+|
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEI-------QPGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHH
Confidence            99999999999999999999987543 6789999999999999999999999999964       55 478899999999


Q ss_pred             HhcCChhhHHHHHHHHhhCCCC------------CchhHHHHh-hhhhcC--cchHHHH
Q 018924          275 KDEGDIGGAENFIELLNDKGFI------------PTDLQDKLL-DNVQNG--KSNLETL  318 (349)
Q Consensus       275 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~-~~~~~g--~~a~~~~  318 (349)
                      ...|++++|...++++.+..+.            +...|..+. ++...|  +.+..+.
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  350 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN  350 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            9999999999999988775321            356788888 887777  4444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=7.3e-19  Score=156.81  Aligned_cols=299  Identities=11%  Similarity=0.014  Sum_probs=237.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      ....|..+...+.+.|++++|+..|+++.+... .+..+|..+..++.+.|++++|.+.+++.. +.+. .+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKAL-EIKP-DHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-chHHHHHHHH
Confidence            456788899999999999999999999998753 377899999999999999999999999987 4443 5678889999


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcch------------------------------------h--------------
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVN------------------------------------S--------------  121 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------------~--------------  121 (349)
                      .++...|++++|.+.|+.+.. .+.....                                    .              
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            999999999999999964421 1111100                                    0              


Q ss_pred             ----------------hHHHHHHHHhh--------cCCHHHHHHHHHHHHhhccCCh-------hhHHHHHHHHhccCCH
Q 018924          122 ----------------AYNVILTLYGK--------YGKKDDVLRIWELYKKAVKVLN-------NGYRNVISSLLKLDDL  170 (349)
Q Consensus       122 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~  170 (349)
                                      ....+...+..        .|++++|..+++......+.+.       .++..+...+...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                            11112212111        2478888888884333333332       2466777888899999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ++|...++.+.+.  .|+...+..+...+...|++++|...++++.+..+. +..+|..+...+...|++++|.+.++++
T Consensus       260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999985  455778888999999999999999999999986643 6778999999999999999999999999


Q ss_pred             HHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          251 LAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       251 ~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                      .+.       .| +...+..+...+...|++++|...++.+.+..+.+...+..+. .+.+.|  ++|...|+++.+.
T Consensus       337 ~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          337 QSL-------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHH-------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            965       34 4678888999999999999999999999998888888899999 999989  8999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=6.6e-19  Score=146.78  Aligned_cols=261  Identities=7%  Similarity=-0.052  Sum_probs=213.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +...+..+...+...|++++|..+++++. +... .+..++..+..++...|++++|.+.|+++.+.  .|+...++..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVC-QAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHH
Confidence            34466778888999999999999999987 4333 46788889999999999999999999999885  44444789999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHH--------------HH-HHhccCCHHHHHHHHHHHHhcCCCCCcch
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNV--------------IS-SLLKLDDLESAEKIFEEWESQALCYDTRI  191 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  191 (349)
                      ...+...|++++|...++......+.+...+..+              .. .+...|++++|...++++.+.. +.+...
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  174 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL  174 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence            9999999999999999994444444444444444              33 3778899999999999998865 446788


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC  270 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  270 (349)
                      +..+...|...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.       .| +...+..+
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l  246 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI-------NPGYVRVMYNM  246 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHHHHH
Confidence            999999999999999999999999986543 5778999999999999999999999999864       34 57888999


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCC------------CchhHHHHh-hhhhcC--cchHHHHHH
Q 018924          271 LDYFKDEGDIGGAENFIELLNDKGFI------------PTDLQDKLL-DNVQNG--KSNLETLRE  320 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~-~~~~~g--~~a~~~~~~  320 (349)
                      ...+...|++++|...++.+....+.            +...|..+. ++.+.|  ++|..++++
T Consensus       247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999998876554            566788888 888888  777777654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=169.22  Aligned_cols=151  Identities=13%  Similarity=0.063  Sum_probs=128.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEE---NGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYA   88 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   88 (349)
                      -..+||+||++|++.|++++|.++|.+|.+   .|+.||..|||+||.+|++.|++++|.++|++|. +.|+.||..|||
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYn  204 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHH
Confidence            356899999999999999999999988764   5899999999999999999999999999999999 889999999999


Q ss_pred             HHHHHHhhcCcH-HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC------hhhHHHHH
Q 018924           89 TVGNGYGKVGLL-DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL------NNGYRNVI  161 (349)
Q Consensus        89 ~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~li  161 (349)
                      +||+++++.|+. ++|.++|++|.+.|+.|+. .+|+.++....+.+    +++..+....+..|+      ..+...+.
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~-vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~  279 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQA-LFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLR  279 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH-HHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh-hhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHH
Confidence            999999999985 7899999999999999999 99999987665543    333333234455544      45666777


Q ss_pred             HHHhccC
Q 018924          162 SSLLKLD  168 (349)
Q Consensus       162 ~~~~~~~  168 (349)
                      +.|.+.+
T Consensus       280 dl~s~d~  286 (1134)
T 3spa_A          280 DVYAKDG  286 (1134)
T ss_dssp             HHHCCCS
T ss_pred             HHHccCC
Confidence            7777655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=8.6e-18  Score=137.53  Aligned_cols=256  Identities=10%  Similarity=0.009  Sum_probs=203.7

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      ++.....|+++.|+...+... .....+.......+..+|...|+++.|...++..    ..|+. .++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~-~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~-~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVK-PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPEL-QAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHH-HHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhH-HHHHHHHHHHcCCC
Confidence            344567899999999998876 3332222345566889999999999999877552    23344 78889999999999


Q ss_pred             CHHHHHHHHH-HHHhhccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924          135 KKDDVLRIWE-LYKKAVKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV  212 (349)
Q Consensus       135 ~~~~a~~~~~-~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  212 (349)
                      +.++|++.++ +...+..| +...+..+...+...|++++|.+.++.      +.+...+..++..|.+.|++++|...|
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999 55555444 455677778999999999999999987      456778899999999999999999999


Q ss_pred             HHHHHcCcccchhhH---HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018924          213 NHEKLKGREIHVKSW---YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIEL  289 (349)
Q Consensus       213 ~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  289 (349)
                      +++.+..  |+....   ...+..+...|++++|..+|+++.+.      .+.+...++.+..++.+.|++++|...+++
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~  225 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRWEAAEGVLQE  225 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999865  443211   22334455679999999999999974      344788899999999999999999999999


Q ss_pred             HhhCCCCCchhHHHHh-hhhhcC--c-chHHHHHHHHhCCCCCCccc
Q 018924          290 LNDKGFIPTDLQDKLL-DNVQNG--K-SNLETLRELYGNSLAGNEET  332 (349)
Q Consensus       290 ~~~~~~~~~~~~~~l~-~~~~~g--~-~a~~~~~~m~~~~~~p~~~t  332 (349)
                      +....|.+..++..++ .+...|  . .+.++++++.+  +.|+...
T Consensus       226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~  270 (291)
T 3mkr_A          226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF  270 (291)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence            9999998999999999 888888  3 46789998876  4677654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=169.75  Aligned_cols=119  Identities=12%  Similarity=0.023  Sum_probs=95.7

Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHH---hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHH
Q 018924          154 NNGYRNVISSLLKLDDLESAEKIFEEWE---SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL  230 (349)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  230 (349)
                      ..||+++|.+||+.|++++|.++|++|.   +.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3578888888888888888888887765   3567888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCCH-HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc
Q 018924          231 ATGYRQNSQI-HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE  277 (349)
Q Consensus       231 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  277 (349)
                      |.++++.|+. ++|.++|++|.+.     |+.||..+|++++.++.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k-----G~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE-----GLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH-----TCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc-----CCCCChhhcccccChhhHH
Confidence            8888888774 6778888888887     8888888888887655543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=8.7e-17  Score=129.19  Aligned_cols=227  Identities=17%  Similarity=0.086  Sum_probs=166.7

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC--Ccc----HH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV--ALD----WV   85 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~----~~   85 (349)
                      ....|..+...+...|++++|+..|++..+..  .+..++..+..++...|++++|...+++.. +...  .++    ..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccccchHHHHH
Confidence            35677888888888889999999888888876  677888888888888888888888888776 2111  111    46


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHh
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLL  165 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  165 (349)
                      ++..+...+...|++++|...|++..+.  .|+.        ..+...|++++|...++......+.+...+..+...+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence            7778888888888888888888888764  2332        23555677788888887444444444566777777788


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHH
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVE  245 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  245 (349)
                      ..|++++|...++++.+.. +.+..++..+...|...|++++|...+++..+..+. +...|..+...+...|++++|.+
T Consensus       151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence            8888888888888877654 445667777777788888888888888877775432 46667777777888888888888


Q ss_pred             HHHHHHHH
Q 018924          246 AMKKVLAA  253 (349)
Q Consensus       246 ~~~~~~~~  253 (349)
                      .++++.+.
T Consensus       229 ~~~~a~~~  236 (258)
T 3uq3_A          229 TLDAARTK  236 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=9.7e-19  Score=146.85  Aligned_cols=250  Identities=10%  Similarity=0.061  Sum_probs=105.0

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924           25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  104 (349)
                      +.|++++|.+.++++.      ++.+|..+..++.+.|++++|++.|.+.       +|..+|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            5677888888888872      3358888888888888888888888542       45567888888888888888888


Q ss_pred             HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                      +.++..++.  .++. .+.+.++.+|.+.|++.++.++++      .|+..+|..+...|...|.+++|..+|..+    
T Consensus        82 ~yl~~ark~--~~~~-~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARES-YVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--Cccc-hhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            877766653  3344 678888888888888888887775      366678888888888888888888888865    


Q ss_pred             CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH
Q 018924          185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV  264 (349)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  264 (349)
                           ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+        .+.|+ 
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------~~~ad-  208 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--------VVHAD-  208 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--------TTCHH-
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--------HhCHh-
Confidence                 36888888888888888888888877      26778888888888888888885544432        23343 


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHHHHHH
Q 018924          265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLETLREL  321 (349)
Q Consensus       265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~~~~m  321 (349)
                       ....++..|.+.|.+++|..+++............|.-+. +|++.. ++.++.++..
T Consensus       209 -~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          209 -ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             3456788888888888888888888877666667788888 888877 5555555433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=9.8e-17  Score=128.88  Aligned_cols=227  Identities=12%  Similarity=0.044  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc--c---hhh
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK--V---NSA  122 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~---~~~  122 (349)
                      ...|..+...+...|++++|...+++.. +..  .+..++..+..++...|++++|.+.+++..+..+...  .   ..+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            4567788888899999999999999887 444  6677888899999999999999999999887543321  0   267


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      |..+...+...|++++|...|+.... ..|+.       ..+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLT-EHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHh-cCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            88899999999999999999983222 23442       34566788899999998888753 34556778888889999


Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChh
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIG  281 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~  281 (349)
                      |++++|...|++..+..+. +...|..+...|...|++++|...++++++.       .| +...+..+..++...|+++
T Consensus       153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-------DPNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999998886543 6778888889999999999999999998864       34 4778888888899999999


Q ss_pred             hHHHHHHHHhhCC
Q 018924          282 GAENFIELLNDKG  294 (349)
Q Consensus       282 ~a~~~~~~~~~~~  294 (349)
                      +|...++.+.+..
T Consensus       225 ~A~~~~~~a~~~~  237 (258)
T 3uq3_A          225 SALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999998887764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=1.1e-16  Score=125.24  Aligned_cols=197  Identities=13%  Similarity=0.016  Sum_probs=96.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +...+..+...+.+.|++++|...|++.. +.+. .+...+..+..++.+.|++++|+..|++..+.  .|+...++..+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            34444445555555555555555555554 3222 33444445555555555555555555555442  23332455555


Q ss_pred             HHHHhhc-----------CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHH
Q 018924          127 LTLYGKY-----------GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFL  195 (349)
Q Consensus       127 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  195 (349)
                      ...+...           |++++|+..|+......+.+...+..+..++...|++++|...|++..+..  .+...+..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            5555555           566666655553333333344455555556666666666666666655544  445555566


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ..+|...|++++|...|++..+..+. +...+..+...+...|++++|++.|++.
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            66666666666666666666654432 4455556666666666666666666554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=5e-19  Score=148.56  Aligned_cols=260  Identities=11%  Similarity=0.073  Sum_probs=126.3

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      ++..+|..|..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+.+++... + .. ++..+.+.+
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar-k-~~-~~~~i~~~L  100 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-K-KA-RESYVETEL  100 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-H-hC-ccchhHHHH
Confidence            44569999999999999999999999653      578899999999999999999999887766 4 33 567888899


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      +.+|.+.|+++++.++++       .|+. .+|+.++..|...|.+++|...|...        ..|..++.++.+.|++
T Consensus       101 i~~Y~Klg~l~e~e~f~~-------~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y  164 (449)
T 1b89_A          101 IFALAKTNRLAELEEFIN-------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY  164 (449)
T ss_dssp             --------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH
T ss_pred             HHHHHHhCCHHHHHHHHc-------CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH
Confidence            999999999999998885       2566 79999999999999999999999922        4799999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ++|.+.++++      .++.+|..++.+|...|+++.|......+.     .++.....++..|.+.|++++|..+++..
T Consensus       165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999988      267899999999999999999966655432     23334557899999999999999999999


Q ss_pred             HHHhcccccCCC-CHHHHHHHHHHHHh--cCChhhHHHHHHHHhhC-CCC-------CchhHHHHh-hhhhcC--cchHH
Q 018924          251 LAAYQTLVKWKP-SVESLAACLDYFKD--EGDIGGAENFIELLNDK-GFI-------PTDLQDKLL-DNVQNG--KSNLE  316 (349)
Q Consensus       251 ~~~~~~~~~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-~~~-------~~~~~~~l~-~~~~~g--~~a~~  316 (349)
                      +       +..+ ....|+-+.-+|++  .++..+..+.|.   .. +.|       +...|..++ .|.+.+  +.|..
T Consensus       234 L-------~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          234 L-------GLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             T-------TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             h-------CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            8       4444 56666666666654  344445554443   22 222       356788888 888888  55654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=1.5e-16  Score=124.49  Aligned_cols=201  Identities=13%  Similarity=0.027  Sum_probs=159.4

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      +++...|..+...+.+.|++++|+..|++..+... .+...+..+..++.+.|++++|...+++.. +.+. .+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLV-ARTP-RYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHH
Confidence            57888999999999999999999999999998743 367789999999999999999999999987 4343 46778888


Q ss_pred             HHHHHhhc-----------CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHH
Q 018924           90 VGNGYGKV-----------GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYR  158 (349)
Q Consensus        90 li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  158 (349)
                      +..++...           |++++|+..|++..+.  .|+...+|..+..++...|++++|+..|+...... .+...+.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence            99999999           9999999999999885  55555789999999999999999999999333333 7778899


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      .+..++...|++++|...|+...+.. +.+...+..+...+...|++++|...|++...
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999999999999999998864 45677888899999999999999999987653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=5.2e-16  Score=125.81  Aligned_cols=197  Identities=11%  Similarity=0.022  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHHHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYATVGN   92 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~   92 (349)
                      .+......+...|++++|+..|++..+.... +...+..+..++...|++++|...+++.. ..+..+  ...+|..+..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence            3444555666666777777777666665322 34456666666666666666666666665 322111  1233555666


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      .+...|++++|.+.|++..+.  .|+...+|..+...+...|++++|+..|+......+.+...+..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666553  222224555666666666666666665552222222233344444412222335555


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc---HHHHHHHHHHHH
Q 018924          173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGL---LEKAENLVNHEK  216 (349)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~  216 (349)
                      |.+.++++.+.. +.+...+..+...+...|+   +++|...+++..
T Consensus       161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            555555544432 2223333334444444444   444444444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.1e-14  Score=127.64  Aligned_cols=316  Identities=12%  Similarity=-0.047  Sum_probs=174.2

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhc---C-
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-----G--ITY-DRYTYCTRLSAYADASDHEGIDKILTMMEA---D-   77 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-   77 (349)
                      +.....||.|...+...|++++|++.|++..+.     +  ..| ...+|+.+..+|...|++++|...+++...   . 
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            345678999999999999999999999987542     1  122 345899999999999999999998887641   0 


Q ss_pred             CC--CCccHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH---hhcCCHHHHHHHHHHHHhhc
Q 018924           78 PN--VALDWVIYATVGNGYGK--VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY---GKYGKKDDVLRIWELYKKAV  150 (349)
Q Consensus        78 ~~--~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~  150 (349)
                      .+  ......++..+..++.+  .+++++|++.|++..+.  .|+.+..+..+..++   ...++.++|++.++......
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence            11  11234566666655555  45789999999998874  444434555444443   23455555555555222222


Q ss_pred             cCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----
Q 018924          151 KVLNNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----  221 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----  221 (349)
                      +.+...+..+...+..    .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+.     
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  284 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH  284 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence            2233333333332222    234445555555544432 233344445555555555555555555444432211     


Q ss_pred             -----------------------------------------------cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 018924          222 -----------------------------------------------IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAY  254 (349)
Q Consensus       222 -----------------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  254 (349)
                                                                     .+...+..+...|...|++++|.+.|+++++. 
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-  363 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence                                                           13345566777788889999999999998854 


Q ss_pred             cccccCCCCH--HHHHHHHH-HHHhcCChhhHHHHHHHHhhC------------------------CCCCchhHHHHh-h
Q 018924          255 QTLVKWKPSV--ESLAACLD-YFKDEGDIGGAENFIELLNDK------------------------GFIPTDLQDKLL-D  306 (349)
Q Consensus       255 ~~~~~~~p~~--~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~-~  306 (349)
                          ...|..  ..+..+.. .....|+.++|...+++....                        .|.+..+|..+. .
T Consensus       364 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~  439 (472)
T 4g1t_A          364 ----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL  439 (472)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                322221  11222222 234678888888877766543                        345567788888 8


Q ss_pred             hhhcC--cchHHHHHHHHhCC-CCCCcccc
Q 018924          307 NVQNG--KSNLETLRELYGNS-LAGNEETL  333 (349)
Q Consensus       307 ~~~~g--~~a~~~~~~m~~~~-~~p~~~t~  333 (349)
                      |...|  ++|++.|++..+.| ..|+..++
T Consensus       440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          440 QELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHCC----------------------
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            88888  89999999887654 23444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=1.4e-15  Score=123.22  Aligned_cols=250  Identities=11%  Similarity=0.014  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhHHHH
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNVI  126 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l  126 (349)
                      ...+......+...|++++|+..+++.. +... .+...+..+..+|...|++++|.+.+++..+....++. ..+|..+
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLE-AKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            4456667788999999999999999987 4332 34457788999999999999999999999884322222 1348999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  206 (349)
                      ...+...|++++|+..|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999995555556667889999999999999999999999998763 445666777773444566999


Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHhc
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKDE  277 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~  277 (349)
                      +|...|+++.+..+. +...+..+...+...|+   +++|...++++.+..    .-.|+      ...|..+...|...
T Consensus       160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~  234 (272)
T 3u4t_A          160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC----APGGAKYKDELIEANEYIAYYYTIN  234 (272)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH----GGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHHHHHHHc
Confidence            999999999986543 46677778888888888   888999999998762    22222      36788899999999


Q ss_pred             CChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          278 GDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       278 g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      |++++|...++.+.+..|.+...+..+.
T Consensus       235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          235 RDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            9999999999999999887777766655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.74  E-value=2e-15  Score=120.98  Aligned_cols=201  Identities=9%  Similarity=-0.015  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++. +... .+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKAL-ASDS-RNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCc-CcHHHHHHHHH
Confidence            3445555555555555555555555555432 1234445555555555555555555555544 2221 23444455555


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      .+...|++++|.+.|+++.+.+..|....++..+...+...|++++|...++......+.+...+..+...+...|++++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            55555555555555555544112232224445555555555555555555552222223334444455555555555555


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      |...++.+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            555555544432 22333444444455555555555555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=5.4e-15  Score=116.07  Aligned_cols=208  Identities=13%  Similarity=-0.042  Sum_probs=122.4

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      +...+..+...+...|++++|.+.|+++.+.  .|+...++..+...+...|++++|...++......+.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            3445556666666666666666666666553  23322466666666666666666666666333333344555666666


Q ss_pred             HHhcc-CCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCH
Q 018924          163 SLLKL-DDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI  240 (349)
Q Consensus       163 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  240 (349)
                      .+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            66666 66666666666666521122 2345556666666667777777776666654432 355666666666677777


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924          241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      ++|.+.++++.+.     ....+...+..+...+...|+.+.+..+++.+....+.+.
T Consensus       164 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          164 GDADYYFKKYQSR-----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            7777777766653     2113445555555666666777777776666665544433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.74  E-value=2.5e-15  Score=118.01  Aligned_cols=205  Identities=8%  Similarity=-0.010  Sum_probs=150.2

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+++.. .... .+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQAL-SIKP-DSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCC-CChHHHHHHH
Confidence            56778888888888888888888888887764 2356678888888888888888888888876 3332 4566777788


Q ss_pred             HHHhhc-CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           92 NGYGKV-GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        92 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      ..+... |++++|...++++.+.+..|....++..+...+...|++++|...++......+.+...+..+...+...|++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            888888 8888888888888763223443367777888888888888888888843334444566777777888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          171 ESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      ++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            8888888877765421455566667777777888888888887776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.74  E-value=4.3e-16  Score=126.45  Aligned_cols=247  Identities=9%  Similarity=-0.046  Sum_probs=163.5

Q ss_pred             hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924           25 KTGNFEKLDSLMHEMEENGIT---YDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD  101 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  101 (349)
                      ..|++++|+..|+++.+....   .+..++..+..++...|++++|...|++.. +.+. .+..+|..+..++...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCHH
Confidence            457788888888888775321   134577777888888888888888888876 4332 45677788888888888888


Q ss_pred             HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924          102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE  181 (349)
Q Consensus       102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  181 (349)
                      +|.+.|++..+.  .|+...++..+...+...|++++|...|+..... .|+.......+..+...|++++|...++...
T Consensus        95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888888888774  3333367888888888888888888888833222 3444344444455566688888888887776


Q ss_pred             hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 018924          182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI---HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLV  258 (349)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  258 (349)
                      ... +++...+ .++..+...++.++|...+..........   +...+..+...|...|++++|...|++++       
T Consensus       172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------  242 (275)
T 1xnf_A          172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV-------  242 (275)
T ss_dssp             HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred             hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence            653 3344333 36666677777778888777766533211   14667777788888888888888888877       


Q ss_pred             cCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924          259 KWKPSVESLAACLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       259 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  287 (349)
                      ...|+.  +.....++...|++++|.+.+
T Consensus       243 ~~~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          243 ANNVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             hCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            335532  122244556667777776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.73  E-value=2.7e-15  Score=120.15  Aligned_cols=204  Identities=14%  Similarity=-0.014  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+...|++++|.+.|+++.+.  .|+...++..+...+...|++++|.+.++......+.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            44455555555556666666666555543  2222245555555566666666666665532222333444555555556


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      ...|++++|.++++++.+.+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666555421122 2344555555666666666666666666554322 345555666666666666666


Q ss_pred             HHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          244 VEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      ..+++++.+.      ...+...+..+...+...|+.++|.+.++.+.+..+.+
T Consensus       195 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          195 RQYYDLFAQG------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHHTT------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHh------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            6666666531      12244455555556666666666666666665554433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=1.7e-15  Score=128.08  Aligned_cols=244  Identities=10%  Similarity=0.040  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYNVIL  127 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~  127 (349)
                      ..|..+..++...|++++|+..+++.. ..+. -+..+|+.+..++...|+ +++|+..|++..+.  .|+...+|+.+.
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g  173 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence            467777778888888888888888877 4333 456778888888888886 88888888888874  455547888888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCcHH
Q 018924          128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR-NGLLE  206 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  206 (349)
                      .++...|++++|+..|+......+-+...|..+..++...|++++|...++++++.. +.+...|+.+..++.. .|..+
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            888888888888888885555556667788888888888888888999888888865 4466778888888888 56657


Q ss_pred             HH-----HHHHHHHHHcCcccchhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC-
Q 018924          207 KA-----ENLVNHEKLKGREIHVKSWYYLATGYRQNS--QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG-  278 (349)
Q Consensus       207 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-  278 (349)
                      +|     ...|++.....+. +...|+.+...+...|  ++++|++.+.++ +      ....+...+..+...|.+.| 
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHhc
Confidence            76     4778888876543 5667888888888877  688888888776 2      33446777888888888764 


Q ss_pred             --------ChhhHHHHHHHH-hhCCCCCchhHHHHh
Q 018924          279 --------DIGGAENFIELL-NDKGFIPTDLQDKLL  305 (349)
Q Consensus       279 --------~~~~a~~~~~~~-~~~~~~~~~~~~~l~  305 (349)
                              .+++|..+++++ .+.++.....|..+.
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~  360 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG  360 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence                    258899999998 676666666676665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.73  E-value=7.9e-16  Score=122.49  Aligned_cols=205  Identities=9%  Similarity=0.028  Sum_probs=85.2

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  167 (349)
                      ..+...+...|++++|...|+++.+.  .|+...++..+...+...|++++|...++......+.+...+..+...+...
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  104 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK  104 (243)
T ss_dssp             ---------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence            33344444444444444444444332  1222234444444444444444444444422222222333444444444444


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAM  247 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  247 (349)
                      |++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+
T Consensus       105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44444444444444432 223334444444555555555555555554443221 3444445555555555555555555


Q ss_pred             HHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHH
Q 018924          248 KKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD  302 (349)
Q Consensus       248 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  302 (349)
                      +++.+.     . ..+..++..+...+...|++++|...++.+.+..+.+...+.
T Consensus       183 ~~~~~~-----~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  231 (243)
T 2q7f_A          183 AAVTEQ-----D-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH  231 (243)
T ss_dssp             HHHHHH-----C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHh-----C-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence            555532     1 123444555555555555555555555555554444443333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.72  E-value=7.3e-16  Score=132.70  Aligned_cols=280  Identities=15%  Similarity=0.069  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhcC---C-CCCccH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR----YTYCTRLSAYADASDHEGIDKILTMMEAD---P-NVALDW   84 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~   84 (349)
                      ...+..+...+...|++++|+..|+++.+.+.. +.    ..+..+..++...|++++|...+++....   . +.....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            445566777889999999999999999987432 33    47888889999999999999998876511   1 122345


Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCC-----------------HHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGK-----------------KDDVLRIW  143 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  143 (349)
                      .++..+...|...|++++|...+++..+...    .+....++..+...|...|+                 +++|+..+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            6778899999999999999999998876421    23333588899999999999                 99999998


Q ss_pred             HH-HH--h--hcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHHHHHH
Q 018924          144 EL-YK--K--AVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKAENLV  212 (349)
Q Consensus       144 ~~-~~--~--~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~  212 (349)
                      +. ..  .  +.. ....++..+...+...|++++|...+++..+.... .+    ..++..+...|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            82 11  1  111 12347888889999999999999999988763211 11    226788999999999999999999


Q ss_pred             HHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 018924          213 NHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFI  287 (349)
Q Consensus       213 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  287 (349)
                      ++.......     ....++..+...|...|++++|.+++++++..............++..+...|...|++++|...+
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  366 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA  366 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            988763211     124678888999999999999999999988652111111112457788888999999999999999


Q ss_pred             HHHhhC
Q 018924          288 ELLNDK  293 (349)
Q Consensus       288 ~~~~~~  293 (349)
                      ++..+.
T Consensus       367 ~~al~~  372 (411)
T 4a1s_A          367 EQHLQL  372 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.72  E-value=6.3e-15  Score=119.54  Aligned_cols=243  Identities=12%  Similarity=0.042  Sum_probs=188.5

Q ss_pred             hcCChHHHHHHHHHhhcCCCC---CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           60 DASDHEGIDKILTMMEADPNV---ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        60 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                      ..|++++|+..++++. +...   +.+..++..+...+...|++++|...|++..+.  .|+...+|..+...+...|++
T Consensus        17 ~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           17 PTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence            4578999999999998 4321   135677889999999999999999999999885  444447999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924          137 DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       137 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                      ++|...|+......+.+...+..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...++...
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999555555566788999999999999999999999999885  4554455555566677899999999998888


Q ss_pred             HcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-----HHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          217 LKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-----VESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       217 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                      .... ++...+ .++..+...++.++|.+.++++...       .|+     ...+..+...|.+.|++++|...++.+.
T Consensus       172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  242 (275)
T 1xnf_A          172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATD-------NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV  242 (275)
T ss_dssp             HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS-------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc-------cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7543 244444 4777788888999999999988732       332     5778889999999999999999999999


Q ss_pred             hCCCCCchhHHHHhhhhhcC--cchHHHH
Q 018924          292 DKGFIPTDLQDKLLDNVQNG--KSNLETL  318 (349)
Q Consensus       292 ~~~~~~~~~~~~l~~~~~~g--~~a~~~~  318 (349)
                      ...+.+...+..  ++...|  ++|++.+
T Consensus       243 ~~~p~~~~~~~~--~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          243 ANNVHNFVEHRY--ALLELSLLGQDQDDL  269 (275)
T ss_dssp             TTCCTTCHHHHH--HHHHHHHHHHC----
T ss_pred             hCCchhHHHHHH--HHHHHHHHHhhHHHH
Confidence            887655443321  444444  5555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.72  E-value=1.7e-15  Score=126.33  Aligned_cols=281  Identities=17%  Similarity=0.114  Sum_probs=209.4

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCC-CCcc
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DPN-VALD   83 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~   83 (349)
                      +...+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|...+++...   ..+ .+..
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            3456667788899999999999999999886422 3    35788889999999999999999887641   111 2123


Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc----chhhHHHHHHHHhhcCC--------------------HHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK----VNSAYNVILTLYGKYGK--------------------KDDV  139 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~--------------------~~~a  139 (349)
                      ..++..+...+...|++++|...+++..+.....+    ...++..+...+...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            56678899999999999999999999876432211    12478889999999999                    9999


Q ss_pred             HHHHHH-HHh--hc--c-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHH
Q 018924          140 LRIWEL-YKK--AV--K-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       140 ~~~~~~-~~~--~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a  208 (349)
                      ...++. ...  ..  . .....+..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999882 111  11  1 12346788888999999999999999988753111 11    23677888899999999999


Q ss_pred             HHHHHHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhH
Q 018924          209 ENLVNHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGA  283 (349)
Q Consensus       209 ~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a  283 (349)
                      ...+++..+....     ....++..+...+...|++++|...++++...............++..+...|...|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9999987753211     11456788889999999999999999998865211111111245777888899999999999


Q ss_pred             HHHHHHHhhC
Q 018924          284 ENFIELLNDK  293 (349)
Q Consensus       284 ~~~~~~~~~~  293 (349)
                      ...+++....
T Consensus       323 ~~~~~~a~~~  332 (338)
T 3ro2_A          323 MHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=4.7e-15  Score=125.41  Aligned_cols=249  Identities=11%  Similarity=-0.009  Sum_probs=203.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      +...|+.+...+.+.|++++|+..|++.++.... +...|+.+..++...|+ +++|+..+++.. ..+. -+..+|+.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~P-~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAII-EEQP-KNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHCC-CCHHHHHHH
Confidence            4677888999999999999999999999987533 67789999999999997 999999999998 5444 567889999


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc-cCC
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK-LDD  169 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~  169 (349)
                      ..++...|++++|+..|+++.+.  .|+...+|..+..++...|++++|+..|+......+.+...|+.+..++.. .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999985  555558999999999999999999999995555566677889999999998 666


Q ss_pred             HHHH-----HHHHHHHHhcCCCCCcchHHHHHHHHHhcC--cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC----
Q 018924          170 LESA-----EKIFEEWESQALCYDTRIPNFLIDVYCRNG--LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS----  238 (349)
Q Consensus       170 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----  238 (349)
                      .++|     ...+++..+.. +-+...|+.+...+...|  ++++|...+.++ +..+ .+...+..+...|.+.|    
T Consensus       251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccc
Confidence            5777     58888888764 445678888888898888  689999999888 4332 35677888888888864    


Q ss_pred             -----CHHHHHHHHHHH-HHHhcccccCCCC-HHHHHHHHHHHH
Q 018924          239 -----QIHKAVEAMKKV-LAAYQTLVKWKPS-VESLAACLDYFK  275 (349)
Q Consensus       239 -----~~~~a~~~~~~~-~~~~~~~~~~~p~-~~~~~~ll~~~~  275 (349)
                           .+++|+++|+++ .       .+.|. ...|..+...+.
T Consensus       328 ~~~~~~~~~A~~~~~~l~~-------~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAK-------EKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-------TTCGGGHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHH-------HhCchhHHHHHHHHHHHH
Confidence                 358999999998 5       55664 455555555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.72  E-value=4.4e-15  Score=127.44  Aligned_cols=301  Identities=17%  Similarity=0.091  Sum_probs=222.1

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVA-   81 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-   81 (349)
                      .+....+......+...|++++|...|++..+.+.. +    ..++..+...+...|++++|...+++...   ..+.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            456777888889999999999999999999887432 3    25788888999999999999999887641   11222 


Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----CcchhhHHHHHHHHhhcCC--------------------HH
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG----AKVNSAYNVILTLYGKYGK--------------------KD  137 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~--------------------~~  137 (349)
                      ....++..+...|...|++++|...+++..+....    +....++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            23566788999999999999999999988764222    1112478899999999999                    99


Q ss_pred             HHHHHHHHHHh---hc--c-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHH
Q 018924          138 DVLRIWELYKK---AV--K-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       138 ~a~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~  206 (349)
                      +|...++....   ..  . ....++..+...+...|++++|...+++..+.... ++    ..++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            99999882111   11  1 12346888899999999999999999998753211 11    236788899999999999


Q ss_pred             HHHHHHHHHHHcCcc----c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChh
Q 018924          207 KAENLVNHEKLKGRE----I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIG  281 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~  281 (349)
                      +|...+++..+....    + ...++..+...|...|++++|.+.++++.+.............++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999988753211    1 14578888999999999999999999988652111111112567788888999999999


Q ss_pred             hHHHHHHHHhhC----CC--CCchhHHHHh-hhhhcC
Q 018924          282 GAENFIELLNDK----GF--IPTDLQDKLL-DNVQNG  311 (349)
Q Consensus       282 ~a~~~~~~~~~~----~~--~~~~~~~~l~-~~~~~g  311 (349)
                      +|...+++..+.    +.  ....++..+. .+...|
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence            999999887654    11  1233455566 666666

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=6.4e-14  Score=124.74  Aligned_cols=300  Identities=9%  Similarity=-0.038  Sum_probs=187.2

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      |...|..++. +.+.|++++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|++.. ...  |+...|..++
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral-~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL-MKV--LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TTC--CCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcC--CChHHHHHHH
Confidence            6778888887 477888999999998888763 3366688888888888888888888888887 322  4544444333


Q ss_pred             H------------------------------------------HHhh---------cCcHHHHHHHHHHHHHhhcCCcch
Q 018924           92 N------------------------------------------GYGK---------VGLLDKALAMLKKSEEQIKGAKVN  120 (349)
Q Consensus        92 ~------------------------------------------~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~  120 (349)
                      .                                          ...+         .|+++.|..+|++..+. +..+..
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~  165 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIE  165 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHH
Confidence            2                                          1111         34555666666665541 111110


Q ss_pred             hhHHHHHHHH-------------hhcCCHH--------------------------------------------------
Q 018924          121 SAYNVILTLY-------------GKYGKKD--------------------------------------------------  137 (349)
Q Consensus       121 ~~~~~l~~~~-------------~~~~~~~--------------------------------------------------  137 (349)
                      ..|.......             ...+++.                                                  
T Consensus       166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~  245 (530)
T 2ooe_A          166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL  245 (530)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence            1222111100             0011111                                                  


Q ss_pred             ----------HHHHHHHHHHhhccCChhhHHHHHHHHhc-------cCCHH-------HHHHHHHHHHhcCCCCCcchHH
Q 018924          138 ----------DVLRIWELYKKAVKVLNNGYRNVISSLLK-------LDDLE-------SAEKIFEEWESQALCYDTRIPN  193 (349)
Q Consensus       138 ----------~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~  193 (349)
                                .+..+|+......+.+...|...+..+.+       .|+++       +|..++++..+.-.+.+...|.
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence                      12222321111222333445555555553       57766       7888888877532244566778


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCcccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHH
Q 018924          194 FLIDVYCRNGLLEKAENLVNHEKLKGREIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACL  271 (349)
Q Consensus       194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll  271 (349)
                      .++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++|+++.+.       .|+ ...+....
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-------~~~~~~~~~~~a  397 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------ARTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTCCTHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------cCCchHHHHHHH
Confidence            8888888888888888888888874322 2 246777777777888888888888888742       332 22222222


Q ss_pred             H-HHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCC
Q 018924          272 D-YFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNS  325 (349)
Q Consensus       272 ~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~  325 (349)
                      . .+...|+.++|..+|+...+..|.+...|..++ .+.+.|  ++|..+|++....+
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            2 233578888898888888877776777888888 777777  78899998887753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=1e-13  Score=112.43  Aligned_cols=223  Identities=12%  Similarity=0.001  Sum_probs=140.2

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD----ASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      +..++..+...+...|++++|+..|++..+.+   +...+..+...+..    .+++++|...|++.. +.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CHHHH
Confidence            45566667777777777777777777776632   44566666667777    777777777777766 333   45566


Q ss_pred             HHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924           88 ATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYRN  159 (349)
Q Consensus        88 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  159 (349)
                      ..+...|..    .+++++|.+.|++..+.+   +. .++..+...|..    .+++++|+..|+......  +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Cc-cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence            667777777    777777777777766542   33 566667777776    777777777776222211  3445555


Q ss_pred             HHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924          160 VISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLA  231 (349)
Q Consensus       160 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  231 (349)
                      +...|..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            5566655    666667776666666543   33455556666666    666666666666666543   244555555


Q ss_pred             HHHhc----CCCHHHHHHHHHHHHHH
Q 018924          232 TGYRQ----NSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       232 ~~~~~----~~~~~~a~~~~~~~~~~  253 (349)
                      ..|..    .+++++|.++|++..+.
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            66665    66666666666666644

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.71  E-value=1.2e-15  Score=121.35  Aligned_cols=202  Identities=13%  Similarity=0.014  Sum_probs=116.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...+++.. +... .+..++..+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKAL-ELDS-SAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-cchHHHHHHH
Confidence            44556666667777777777777777776643 2245566666777777777777777777665 3222 3456666677


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      ..+...|++++|.+.++++.+..  |+...++..+...+...|++++|...++......+.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777766643  2222566667777777777777777776333334445556666666677777777


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      +|...++.+.+.. +.+..++..+...|...|++++|...++++.+..
T Consensus       177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            7777776666543 3345566666666777777777777777666643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.70  E-value=4.6e-14  Score=114.47  Aligned_cols=228  Identities=12%  Similarity=-0.004  Sum_probs=188.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhh
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSA  122 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  122 (349)
                      +..++..+...+...|++++|...|++.. +.   .+...+..+...|..    .+++++|.+.|++..+.+   +. .+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~-~a   76 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS-NG   76 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH-HH
Confidence            56678888888999999999999999988 42   345677788899999    999999999999988754   44 78


Q ss_pred             HHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924          123 YNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNF  194 (349)
Q Consensus       123 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (349)
                      +..+...|..    .+++++|+..|+.....  .+...+..+...|..    .+++++|...+++..+.+   +...+..
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            8899999999    99999999999932222  266778888888988    999999999999998865   4567777


Q ss_pred             HHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924          195 LIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVES  266 (349)
Q Consensus       195 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  266 (349)
                      +...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.++|++..+.     +  | ...
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~--~-~~a  220 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-----E--N-GGG  220 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-----T--C-HHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-----C--C-HHH
Confidence            8888888    899999999999988864   45677888888888    99999999999999864     2  3 667


Q ss_pred             HHHHHHHHHh----cCChhhHHHHHHHHhhCCCCCc
Q 018924          267 LAACLDYFKD----EGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       267 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      +..+...|..    .+++++|...++...+.++++.
T Consensus       221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            7777888888    8999999999999988766443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.70  E-value=6.4e-13  Score=117.11  Aligned_cols=16  Identities=13%  Similarity=-0.195  Sum_probs=7.1

Q ss_pred             cCcHHHHHHHHHHHHH
Q 018924          202 NGLLEKAENLVNHEKL  217 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~~  217 (349)
                      .+++++|..+|++..+
T Consensus       272 ~~d~~~A~~~~~~a~~  287 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAE  287 (490)
T ss_dssp             SCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3444444444444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.69  E-value=8.6e-13  Score=116.29  Aligned_cols=284  Identities=11%  Similarity=0.004  Sum_probs=216.6

Q ss_pred             cHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhcCCCCCcc
Q 018924           12 TTVVYNSMLKLYYK----TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD----ASDHEGIDKILTMMEADPNVALD   83 (349)
Q Consensus        12 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~   83 (349)
                      +..++..|...|..    .+++++|+..|++..+.|   +...+..|...|..    .+++++|..+|++.. +.+   +
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~  110 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKG---L  110 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---C
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC---C
Confidence            66777888888888    899999999999998875   66788888888988    899999999999987 544   4


Q ss_pred             HHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChh
Q 018924           84 WVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNN  155 (349)
Q Consensus        84 ~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  155 (349)
                      ...+..|...|..    .+++++|.+.|++..+.+   +. .++..|...|..    .+++++|++.|+.....  .+..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD-SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            5666778888888    889999999999988753   33 678888888887    88999999999933222  3567


Q ss_pred             hHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhH
Q 018924          156 GYRNVISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSW  227 (349)
Q Consensus       156 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  227 (349)
                      .+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|..+|++..+.+   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            78888888887    899999999999998865   45677778888886    789999999999988764   44566


Q ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhCCCCCc
Q 018924          228 YYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE-----GDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       228 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      ..+...|..    .+++++|.++|++..+.     +   +...+..+...|...     ++.++|...++...+.+.  .
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-----~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~  328 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ-----G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--A  328 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-----T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--H
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-----C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--H
Confidence            666666766    78899999999888753     2   344555556666655     677777777777666542  3


Q ss_pred             hhHHHHh-hhhhcC-----cchHHHHHHHHhC
Q 018924          299 DLQDKLL-DNVQNG-----KSNLETLRELYGN  324 (349)
Q Consensus       299 ~~~~~l~-~~~~~g-----~~a~~~~~~m~~~  324 (349)
                      ..+..+. .|.+.|     ++|++.|++..+.
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            3444455 444433     5666666666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=2.7e-13  Score=111.99  Aligned_cols=237  Identities=8%  Similarity=-0.024  Sum_probs=170.4

Q ss_pred             cHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHH
Q 018924           12 TTVVYNSMLKLYYKT----GNF----EKLDSLMHEMEENGITYDRYTYCTRLSAYAD-------ASDH-------EGIDK   69 (349)
Q Consensus        12 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~   69 (349)
                      +...|...+..-.+.    ++.    ++|..+|++..... +-+...|..++..+..       .|++       ++|..
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~   85 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN   85 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence            456777777765554    233    67888999988763 3366788877777653       5775       88999


Q ss_pred             HHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchh-hHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 018924           70 ILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNS-AYNVILTLYGKYGKKDDVLRIWELYKK  148 (349)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  148 (349)
                      +|++.. ..-.+-+...|..++..+.+.|++++|.++|++..+.  .|.... +|..++..+.+.|++++|..+|+....
T Consensus        86 ~~~rAl-~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           86 IYERAI-STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHH-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999888 4212235567888888888999999999999998873  444423 788888888888999999988884444


Q ss_pred             hccCChhhHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC-ccc--ch
Q 018924          149 AVKVLNNGYRNVISSLL-KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-REI--HV  224 (349)
Q Consensus       149 ~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~  224 (349)
                      ..+++...|...+.... ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..|  ..
T Consensus       163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            33444444544333322 3688888888888887753 4456778888888888888888888888888752 233  35


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ..|..++..+.+.|+.++|..+++++.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57777788888888888888888888865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.66  E-value=6.6e-15  Score=126.72  Aligned_cols=274  Identities=14%  Similarity=0.012  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCCcchh
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGAKVNS  121 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~  121 (349)
                      ..+..+...+...|++++|...|++.. +.+.. +.  ..++..+...|...|++++|...+++..+..    ..+....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            345566778889999999999999987 43321 11  2468889999999999999999999987641    1233336


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhh------ccCChhhHHHHHHHHhccCC-----------------HHHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKA------VKVLNNGYRNVISSLLKLDD-----------------LESAEKIFE  178 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~  178 (349)
                      ++..+...|...|++++|...++.....      .+....++..+...|...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7889999999999999999999822111      12233578888999999999                 999999998


Q ss_pred             HHHhc----CC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-cc----hhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          179 EWESQ----AL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-IH----VKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       179 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      +..+.    +. .....++..+...|...|++++|...+++..+.... ++    ...+..+...|...|++++|.+.++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            87642    11 112346778889999999999999999988763211 11    2378888999999999999999999


Q ss_pred             HHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--cchHHHHH
Q 018924          249 KVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--KSNLETLR  319 (349)
Q Consensus       249 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~~a~~~~~  319 (349)
                      ++...............++..+...+...|++++|...+++......  .+    ...+..+. .+.+.|  ++|...++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99875221111111256788888899999999999999998876421  11    33677777 888888  78888888


Q ss_pred             HHHh
Q 018924          320 ELYG  323 (349)
Q Consensus       320 ~m~~  323 (349)
                      +..+
T Consensus       368 ~al~  371 (411)
T 4a1s_A          368 QHLQ  371 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=5.5e-13  Score=118.71  Aligned_cols=211  Identities=11%  Similarity=0.060  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHhhcCCcchhhHHHHHHHHhh-------cCCHH-------HHHHHHHHHHhh-ccCChhhHHHHHHHHhc
Q 018924          102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGK-------YGKKD-------DVLRIWELYKKA-VKVLNNGYRNVISSLLK  166 (349)
Q Consensus       102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~-~~~~~~~~~~li~~~~~  166 (349)
                      ++..+|++....  .|..+..|..++..+..       .|+++       +|..+|+..... .+.+...|..++..+.+
T Consensus       256 ~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            344555555553  23444678888887775       68887       899999944443 34456788999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCc--chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-HhcCCCHHHH
Q 018924          167 LDDLESAEKIFEEWESQALCYDT--RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQNSQIHKA  243 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a  243 (349)
                      .|++++|..+|+.+.+.  .|+.  ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|++++|
T Consensus       334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred             cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence            99999999999999985  4542  47888999999999999999999999875322 23333222222 3468999999


Q ss_pred             HHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch----hHHHHh-hhhhcC--cchH
Q 018924          244 VEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD----LQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~-~~~~~g--~~a~  315 (349)
                      ..+|+..++.       .| +...|..++..+.+.|+.++|..+|+++....+.++.    .|...+ ...+.|  +.+.
T Consensus       411 ~~~~e~al~~-------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~  483 (530)
T 2ooe_A          411 FKIFELGLKK-------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  483 (530)
T ss_dssp             HHHHHHHHHH-------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHHHH-------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999965       45 5788999999999999999999999999987654433    677777 767778  7888


Q ss_pred             HHHHHHHhC
Q 018924          316 ETLRELYGN  324 (349)
Q Consensus       316 ~~~~~m~~~  324 (349)
                      .+++++.+.
T Consensus       484 ~~~~r~~~~  492 (530)
T 2ooe_A          484 KVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.2e-15  Score=124.49  Aligned_cols=242  Identities=14%  Similarity=0.107  Sum_probs=167.5

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcC------
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEEN-------GITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD------   77 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------   77 (349)
                      .+..+|..+...+...|++++|..+|+++.+.       ..+....++..+...+...|++++|...+++....      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            35778999999999999999999999998873       22334557888999999999999999999887621      


Q ss_pred             CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh------cCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh--
Q 018924           78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQI------KGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK--  148 (349)
Q Consensus        78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~--  148 (349)
                      .+.+....++..+...|...|++++|.+.|++..+..      ..+....++..+...+...|++++|+..++ ....  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            2233456778889999999999999999999987642      224443678889999999999999999998 3222  


Q ss_pred             ----h-ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCCcc-hHH------HHHHHHHhcCcHHHHH
Q 018924          149 ----A-VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ-------ALCYDTR-IPN------FLIDVYCRNGLLEKAE  209 (349)
Q Consensus       149 ----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~------~l~~~~~~~~~~~~a~  209 (349)
                          + .+....++..+...+...|++++|...++++.+.       ...+... .+.      .+...+...+.+.++.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                1 1223356888889999999999999999988753       1122222 222      1222233344455555


Q ss_pred             HHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          210 NLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ..+........ .+..++..+...|...|++++|.++|+++++.
T Consensus       265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            66666654332 25567888888899999999999999888754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=5.3e-14  Score=106.96  Aligned_cols=166  Identities=16%  Similarity=0.121  Sum_probs=112.7

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      +..+|..+...|.+.|++++|++.|++..+.  .|+...+|..+..+|...|++++|...++......+.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            4556777777777777777777777777664  34444677777777777777777777777444444445556666666


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  242 (349)
                      .+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|...|++..+..+. +..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            6777777777777777766643 344556666777777777777777777777765433 55667777777777777777


Q ss_pred             HHHHHHHHHH
Q 018924          243 AVEAMKKVLA  252 (349)
Q Consensus       243 a~~~~~~~~~  252 (349)
                      |++.|+++++
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=2.2e-14  Score=122.98  Aligned_cols=278  Identities=14%  Similarity=-0.005  Sum_probs=204.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCC
Q 018924           45 TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGA  117 (349)
Q Consensus        45 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~  117 (349)
                      .+....+......+...|++++|...+++.. +.+.. +.  ..++..+...+...|++++|...+++.....    ..+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            3445567778888999999999999999987 33321 21  3567889999999999999999999876532    123


Q ss_pred             cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh--ccCC----hhhHHHHHHHHhccCC--------------------HH
Q 018924          118 KVNSAYNVILTLYGKYGKKDDVLRIWELYKKA--VKVL----NNGYRNVISSLLKLDD--------------------LE  171 (349)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~--------------------~~  171 (349)
                      ....++..+...+...|++++|...++.....  ..++    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            33357888999999999999999999822111  1122    3478888899999999                    99


Q ss_pred             HHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-c----chhhHHHHHHHHhcCCCHH
Q 018924          172 SAEKIFEEWESQ----ALC-YDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-I----HVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       172 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~  241 (349)
                      +|...+++..+.    +.. ....++..+...|...|++++|...+++..+.... +    ...++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999887642    111 12346778889999999999999999988753211 1    1237888899999999999


Q ss_pred             HHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--c
Q 018924          242 KAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--K  312 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~  312 (349)
                      +|...++++....+..........++..+...|...|++++|...++.......  .+    ...+..+. .+.+.|  +
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999998865211111111156778888899999999999999988876422  12    34666777 888888  7


Q ss_pred             chHHHHHHHHh
Q 018924          313 SNLETLRELYG  323 (349)
Q Consensus       313 ~a~~~~~~m~~  323 (349)
                      +|...+++..+
T Consensus       325 ~A~~~~~~al~  335 (406)
T 3sf4_A          325 QAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=1.6e-14  Score=120.43  Aligned_cols=275  Identities=14%  Similarity=0.008  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----cCCcchh
Q 018924           49 YTYCTRLSAYADASDHEGIDKILTMMEADPNVA-LD--WVIYATVGNGYGKVGLLDKALAMLKKSEEQI----KGAKVNS  121 (349)
Q Consensus        49 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~  121 (349)
                      ..+......+...|++++|...+++.. +.... +.  ...+..+...+...|++++|.+.+++..+..    ..+....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            345556777889999999999999987 33321 11  4677889999999999999999999876531    1223236


Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhc--cCC----hhhHHHHHHHHhccCC--------------------HHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAV--KVL----NNGYRNVISSLLKLDD--------------------LESAEK  175 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~--------------------~~~a~~  175 (349)
                      ++..+...+...|++++|...++......  .++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            78899999999999999999998222111  122    2378888899999999                    999999


Q ss_pred             HHHHHHhc----CC-CCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-----cchhhHHHHHHHHhcCCCHHHHHH
Q 018924          176 IFEEWESQ----AL-CYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-----IHVKSWYYLATGYRQNSQIHKAVE  245 (349)
Q Consensus       176 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~  245 (349)
                      .+++..+.    +. .....++..+...+...|++++|...+++..+....     ....++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99886542    11 112346778888999999999999999987753111     113378888899999999999999


Q ss_pred             HHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CC----chhHHHHh-hhhhcC--cchHH
Q 018924          246 AMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IP----TDLQDKLL-DNVQNG--KSNLE  316 (349)
Q Consensus       246 ~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~-~~~~~g--~~a~~  316 (349)
                      .+++................++..+...+...|++++|...++.+....+  .+    ...+..+. .+.+.|  ++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99998865211111111256778888899999999999999988766422  12    33566777 888888  89999


Q ss_pred             HHHHHHhC
Q 018924          317 TLRELYGN  324 (349)
Q Consensus       317 ~~~~m~~~  324 (349)
                      .+++..+.
T Consensus       325 ~~~~a~~~  332 (338)
T 3ro2_A          325 FAEKHLEI  332 (338)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.63  E-value=1e-13  Score=118.23  Aligned_cols=296  Identities=12%  Similarity=-0.013  Sum_probs=202.8

Q ss_pred             HHhcCChhHHHHHHHHHHHC--CCCCCH--HHHHHHHHHH--HhcCChHHHH-----------HHHHHhhcCCCCCccHH
Q 018924           23 YYKTGNFEKLDSLMHEMEEN--GITYDR--YTYCTRLSAY--ADASDHEGID-----------KILTMMEADPNVALDWV   85 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~--~~~p~~--~~~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   85 (349)
                      +.+.+++++|..+++++.+.  ..+.|.  ..|-.++..-  ...++++.+.           +.++.+. ...  .+..
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~-~~~--~~~~   98 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID-KKQ--ARLT   98 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH-HHT--HHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH-hcC--CCch
Confidence            46789999999999998764  332333  3444444321  1233344444           6666664 211  1212


Q ss_pred             H------HHHHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh--ccCC
Q 018924           86 I------YATVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKA--VKVL  153 (349)
Q Consensus        86 ~------~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~  153 (349)
                      .      +......+...|++++|...|++..+...    .+....++..+...|...|+++.|...++....-  -.++
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            2      22366778899999999999999876411    1222367899999999999999999999832221  1121


Q ss_pred             -----hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHHHHHHHHHhcCcHHHHHHHHHHHHH-----c
Q 018924          154 -----NNGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPNFLIDVYCRNGLLEKAENLVNHEKL-----K  218 (349)
Q Consensus       154 -----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~  218 (349)
                           ..+++.+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+     .
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                 347888999999999999999999988753211 11    23688899999999999999999998876     2


Q ss_pred             CcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCC
Q 018924          219 GREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD---IGGAENFIELLNDKGF  295 (349)
Q Consensus       219 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~  295 (349)
                      ..+....++..+...|...|++++|.+.+++..+..... +-......+..+...+...|+   +++|..+++.... .+
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~  336 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YA  336 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HH
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HH
Confidence            213346678899999999999999999999988651100 111122335667777888888   7777777766521 11


Q ss_pred             CCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          296 IPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       296 ~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      .....+..+. .|.+.|  ++|...+++..+
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2234566677 888888  899999988754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=7.3e-13  Score=109.37  Aligned_cols=221  Identities=11%  Similarity=-0.035  Sum_probs=171.2

Q ss_pred             HHHHHHHHHhhcCCCCCccHHHHHHHHHHHh-------hcCcH-------HHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924           65 EGIDKILTMMEADPNVALDWVIYATVGNGYG-------KVGLL-------DKALAMLKKSEEQIKGAKVNSAYNVILTLY  130 (349)
Q Consensus        65 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (349)
                      ++|..+|++.. .... .+...|..++..+.       +.|++       ++|..+|++..+. +.|+....|..++..+
T Consensus        33 ~~a~~~~~~al-~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCL-LVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHH-HHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence            67888888887 4332 56677777777765       35776       8999999999873 2455546899999999


Q ss_pred             hhcCCHHHHHHHHHHHHhhccCC-hh-hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-hcCcHHH
Q 018924          131 GKYGKKDDVLRIWELYKKAVKVL-NN-GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC-RNGLLEK  207 (349)
Q Consensus       131 ~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~  207 (349)
                      ...|++++|..+|+.... ..|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++
T Consensus       110 ~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcCCHHHHHHHHHHHHh-ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999994333 4454 33 78999999999999999999999998864 344445544333322 3699999


Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc-CCC--CHHHHHHHHHHHHhcCChhhHH
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK-WKP--SVESLAACLDYFKDEGDIGGAE  284 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~  284 (349)
                      |..+|++..+..+. +...|..++..+.+.|++++|..+|++++..     . +.|  ....|..++....+.|+.+.|.
T Consensus       188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~~l~p~~~~~l~~~~~~~~~~~g~~~~a~  261 (308)
T 2ond_A          188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-----SSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999876443 6778889999999999999999999999863     2 355  3667888888888999999999


Q ss_pred             HHHHHHhhCCCC
Q 018924          285 NFIELLNDKGFI  296 (349)
Q Consensus       285 ~~~~~~~~~~~~  296 (349)
                      .+++++.+..|.
T Consensus       262 ~~~~~a~~~~p~  273 (308)
T 2ond_A          262 KVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHccc
Confidence            999999887664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=1.1e-14  Score=120.25  Aligned_cols=239  Identities=13%  Similarity=0.079  Sum_probs=165.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-------CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADP-------NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------  113 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------  113 (349)
                      +..++..+...+...|++++|..+++++. +.       ..+....++..+...|...|++++|...+++..+.      
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34578888899999999999999998887 31       23345677888999999999999999999998764      


Q ss_pred             hcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh------hc-cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc--
Q 018924          114 IKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK------AV-KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ--  183 (349)
Q Consensus       114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--  183 (349)
                      +..+....++..+...+...|++++|...++ ....      +. +.....+..+...+...|++++|..+++++.+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            2234443678899999999999999999998 2221      11 223456888889999999999999999988764  


Q ss_pred             ----CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC-------cccc-------hhhHHHHHHHHhcCCCHHHHH
Q 018924          184 ----ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG-------REIH-------VKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       184 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~a~  244 (349)
                          +..| ...++..+...|...|++++|...++++.+..       ..+.       ...+..+...+...+.+.++.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                1122 24467788899999999999999999887531       1111       112223333444556666777


Q ss_pred             HHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          245 EAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ..++.....       .| +..++..+..+|.+.|++++|...+++..+.
T Consensus       265 ~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          265 GWYKACKVD-------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCC-------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            777776632       33 4577888888999999999999999887653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=1.6e-13  Score=120.08  Aligned_cols=213  Identities=12%  Similarity=0.009  Sum_probs=175.7

Q ss_pred             hHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHH
Q 018924           64 HEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLL-DKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRI  142 (349)
Q Consensus        64 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  142 (349)
                      ++++...++... .... .+...+..+...+...|++ ++|++.|++..+.  .|+...+|..+..+|...|++++|...
T Consensus        84 ~~~al~~l~~~~-~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVL-GSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHH-TTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHh-ccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            566777777766 4332 5778888999999999999 9999999999885  455547999999999999999999999


Q ss_pred             HHHHHhhccCChhhHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc--------CcH
Q 018924          143 WELYKKAVKVLNNGYRNVISSLLKL---------DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN--------GLL  205 (349)
Q Consensus       143 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  205 (349)
                      |+... ...|+...+..+...+...         |++++|...+++..+.. +.+...|..+..+|...        |++
T Consensus       160 ~~~al-~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          160 FSGAL-THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHH-TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHH-hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            99332 3346678888999999999         99999999999998864 45677888999999988        999


Q ss_pred             HHHHHHHHHHHHcCcc--cchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924          206 EKAENLVNHEKLKGRE--IHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG  282 (349)
Q Consensus       206 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~  282 (349)
                      ++|...|++..+..+.  -+...|..+...|...|++++|.+.|+++.+.       .| +...+..+...+...|++++
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-------DPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999986531  27788999999999999999999999999864       45 46678888888888998888


Q ss_pred             HHHHHHH
Q 018924          283 AENFIEL  289 (349)
Q Consensus       283 a~~~~~~  289 (349)
                      |...+..
T Consensus       311 Ai~~~~~  317 (474)
T 4abn_A          311 LLESKGK  317 (474)
T ss_dssp             HHHHTTT
T ss_pred             HHHHhcc
Confidence            8875543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=3e-13  Score=102.74  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=76.5

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...+.... .... .+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFV-VLDT-TSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCc-hhHHHHHHHH
Confidence            3444555555555555555555555555544322 34445555555555555555555555443 2121 2333344444


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      ..+...++++.|...+.+..+.  .|+...++..+...+...|++++|++.|+......+.+..+|..+..+|.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            4455555555555555554442  22222344444444555555555554444222222333334444444444444444


Q ss_pred             HHHHHHHHHHh
Q 018924          172 SAEKIFEEWES  182 (349)
Q Consensus       172 ~a~~~~~~~~~  182 (349)
                      +|.+.|++..+
T Consensus       159 ~A~~~~~~al~  169 (184)
T 3vtx_A          159 EAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            44444444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.2e-12  Score=114.72  Aligned_cols=205  Identities=13%  Similarity=-0.020  Sum_probs=148.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhc-------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc----
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEA-------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK----  115 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----  115 (349)
                      ....|+.+...+...|++++|++.|++...       ...-+....+|+.+..+|...|++++|...+++..+...    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            345799999999999999999999987641       111223467899999999999999999999998865321    


Q ss_pred             --CCcchhhHHHHHHHHhhc--CCHHHHHHHHHHHHhhccCChhhHHHHHHH---HhccCCHHHHHHHHHHHHhcCCCCC
Q 018924          116 --GAKVNSAYNVILTLYGKY--GKKDDVLRIWELYKKAVKVLNNGYRNVISS---LLKLDDLESAEKIFEEWESQALCYD  188 (349)
Q Consensus       116 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~  188 (349)
                        .+....++..+..++...  +++++|+..|+......|.+...+..+..+   +...++.++|.+.+++..+.. +.+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence              122324666666666654  579999999994444344444455555444   345677888999999888764 345


Q ss_pred             cchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          189 TRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       189 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ..++..+...+..    .+++++|...+++.....+. +...+..+...|...|++++|.+.++++.+.
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            5566666555554    46788999999998886543 6678889999999999999999999999865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.58  E-value=2.9e-12  Score=120.50  Aligned_cols=267  Identities=12%  Similarity=0.135  Sum_probs=173.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG   98 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   98 (349)
                      +...+...|.+++|..+|++...     .....+.++.   ..+++++|.++.++..       +..+|..+..++.+.|
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCC
Confidence            45667778888888888877521     1222233322   5667777777776553       2466777888888888


Q ss_pred             cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHH
Q 018924           99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFE  178 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  178 (349)
                      ++++|.+.|.+.      .+. ..|..++.++.+.|++++|.+.+.|..... +++...+.++.+|++.++++....+. 
T Consensus      1120 ~~kEAIdsYiKA------dD~-say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA------DDP-SSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred             CHHHHHHHHHhc------CCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence            888888888552      233 567778888888888888888887544333 33333445777777777776433332 


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---
Q 018924          179 EWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQ---  255 (349)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---  255 (349)
                         +   .++...|..+...|...|++++|..+|...         ..|..+...|++.|++++|.+.+++......   
T Consensus      1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A         1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred             ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence               1   334445556777777777777777777663         3667777777777777777777666532200   


Q ss_pred             ----------------ccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC-cchHHH
Q 018924          256 ----------------TLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG-KSNLET  317 (349)
Q Consensus       256 ----------------~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g-~~a~~~  317 (349)
                                      ...++..++..+..++..|.+.|.+++|..+++............|.-+. .|++.. ++.++.
T Consensus      1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A         1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence                            00012235566778888899999999999999888877666666788888 888888 555544


Q ss_pred             HHHHHhC
Q 018924          318 LRELYGN  324 (349)
Q Consensus       318 ~~~m~~~  324 (349)
                      ++-...+
T Consensus      1336 lk~f~~r 1342 (1630)
T 1xi4_A         1336 LELFWSR 1342 (1630)
T ss_pred             HHHHHHh
Confidence            4444333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.58  E-value=8.7e-14  Score=121.82  Aligned_cols=208  Identities=13%  Similarity=0.009  Sum_probs=175.6

Q ss_pred             cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH-HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHH
Q 018924           99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK-DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIF  177 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  177 (349)
                      .++++.+.+++....  .|+....+..+...+...|++ ++|+..|+......+.+...|..+...|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356677777766543  444447899999999999999 99999999544555556788999999999999999999999


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHhc---------CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC--------CCH
Q 018924          178 EEWESQALCYDTRIPNFLIDVYCRN---------GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--------SQI  240 (349)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~  240 (349)
                      ++..+.  .|+...+..+...|...         |++++|...|++..+..+. +...|..+..+|...        |++
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            999985  46678888999999999         9999999999999987644 677899999999888        999


Q ss_pred             HHHHHHHHHHHHHhcccccCCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cc
Q 018924          241 HKAVEAMKKVLAAYQTLVKWKP----SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KS  313 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~  313 (349)
                      ++|++.|+++++.       .|    +...|..+..+|...|++++|...|+++.+..+.+...+..+. .+...|  ++
T Consensus       238 ~~A~~~~~~al~~-------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          238 QQALSAYAQAEKV-------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHHHHHHHH-------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999964       45    7888999999999999999999999999998888888888888 777776  56


Q ss_pred             hHHHH
Q 018924          314 NLETL  318 (349)
Q Consensus       314 a~~~~  318 (349)
                      |++.+
T Consensus       311 Ai~~~  315 (474)
T 4abn_A          311 LLESK  315 (474)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=1e-11  Score=105.38  Aligned_cols=278  Identities=11%  Similarity=-0.015  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-ccHHH
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRY----TYCTRLSAYADASDHEGIDKILTMMEA---DPNVA-LDWVI   86 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~   86 (349)
                      .+......+...|++++|...+++........+..    +++.+...+...|++++|...+++...   ..+.. ....+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34445556778999999999999988764222222    456677788889999999999988652   11211 11233


Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcC------CcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc---C--Chh
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK---V--LNN  155 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~  155 (349)
                      +..+...+...|++++|...+++..+....      |....++..+...+...|++++|...++......+   +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            567888899999999999999998764321      22324677788899999999999999993222111   1  124


Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHH-----HHHHHHHhcCcHHHHHHHHHHHHHcCccc---chhh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPN-----FLIDVYCRNGLLEKAENLVNHEKLKGREI---HVKS  226 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~  226 (349)
                      ++..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+++.......+   ....
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            5778888899999999999999998764222221 1222     23344778999999999999887643221   1224


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV-ESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      +..+...+...|++++|...++........ .+..++. ..+..+..++...|+.++|...+++....
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            667788899999999999999998765111 1212222 35666777889999999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.56  E-value=2.4e-12  Score=109.69  Aligned_cols=231  Identities=10%  Similarity=0.074  Sum_probs=174.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhcCC----CCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-----CcchhhH
Q 018924           54 RLSAYADASDHEGIDKILTMMEADP----NVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-----AKVNSAY  123 (349)
Q Consensus        54 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~  123 (349)
                      ....+...|++++|...+++.. ..    +-.+ ...++..+...|...|++++|...+++..+....     +....++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            5566788999999999999987 32    2112 3567888999999999999999999998764322     2222578


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhc--cCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhc----CC-CCCcchH
Q 018924          124 NVILTLYGKYGKKDDVLRIWELYKKAV--KVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQ----AL-CYDTRIP  192 (349)
Q Consensus       124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~  192 (349)
                      +.+...|...|++++|...++....-.  .++    ..++..+...|...|++++|...+++..+.    +. +....++
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            899999999999999999998222111  122    147888999999999999999999998762    22 3345678


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC----cccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHH
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKG----REIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVE  265 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~  265 (349)
                      ..+...|.+.|++++|...+++..+..    -......+..+...+...|+   +++|+.++++..       .......
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-------~~~~~~~  340 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-------LYADLED  340 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-------CHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-------CHHHHHH
Confidence            889999999999999999999877531    11122335678888889998   777777777652       2222455


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          266 SLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .+..+...|...|++++|...++....
T Consensus       341 ~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          341 FAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            677888999999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.56  E-value=3.2e-12  Score=108.70  Aligned_cols=312  Identities=12%  Similarity=-0.017  Sum_probs=208.3

Q ss_pred             CCCccHHHHHHHHHHH--HhcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HhcCChHHHH---------HH
Q 018924            8 GLARTTVVYNSMLKLY--YKTGNFEKLDSLMHEMEEN--GITYD--RYTYCTRLSAY--ADASDHEGID---------KI   70 (349)
Q Consensus         8 g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~--~~~~~~~~a~---------~~   70 (349)
                      .+.|+..+=+.|-..|  .+.+++++|..+++++.+.  ....|  ...|-.++..-  ...+.++.+.         ..
T Consensus         5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~   84 (378)
T 3q15_A            5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL   84 (378)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence            4567777777777777  8899999999999998663  22223  33444444431  1112222222         55


Q ss_pred             HHHhhcCCCCCcc-HH---HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----CcchhhHHHHHHHHhhcCCHHHHHHH
Q 018924           71 LTMMEADPNVALD-WV---IYATVGNGYGKVGLLDKALAMLKKSEEQIKG----AKVNSAYNVILTLYGKYGKKDDVLRI  142 (349)
Q Consensus        71 ~~~~~~~~~~~~~-~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~  142 (349)
                      ++.+. ....+.+ ..   .+......+...|++++|...|++..+....    +....++..+...|...|+++.|...
T Consensus        85 l~~i~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~  163 (378)
T 3q15_A           85 LETIE-TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH  163 (378)
T ss_dssp             HHHHH-GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHh-ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            66654 2111111 11   2234556678899999999999998764221    22235788999999999999999999


Q ss_pred             HHHHHh--hccC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CCcchHHHHHHHHHhcCcHHHHHH
Q 018924          143 WELYKK--AVKV-----LNNGYRNVISSLLKLDDLESAEKIFEEWESQ----ALC-YDTRIPNFLIDVYCRNGLLEKAEN  210 (349)
Q Consensus       143 ~~~~~~--~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~  210 (349)
                      ++....  ...+     ...+++.+...|...|++++|.+.+++..+.    +.. ....++..+..+|...|++++|..
T Consensus       164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~  243 (378)
T 3q15_A          164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE  243 (378)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            982221  1111     2356788999999999999999999987753    111 123467788999999999999999


Q ss_pred             HHHHHHH-----cCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC---hhh
Q 018924          211 LVNHEKL-----KGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD---IGG  282 (349)
Q Consensus       211 ~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~  282 (349)
                      .+++..+     ..+. ...++..+...|.+.|++++|..++++..+.... .+-......+..+...+...|+   +.+
T Consensus       244 ~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~ly~~~~~~~~~~~  321 (378)
T 3q15_A          244 HFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA-RSHKFYKELFLFLQAVYKETVDERKIHD  321 (378)
T ss_dssp             HHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT-TCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9998876     4333 3677888999999999999999999999875111 0111123445556666777788   777


Q ss_pred             HHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          283 AENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       283 a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      |...++.... .+.....+..+. .|.+.|  ++|...|++..+
T Consensus       322 al~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          322 LLSYFEKKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777765221 112233556666 888888  889988887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.52  E-value=9.2e-12  Score=117.16  Aligned_cols=261  Identities=11%  Similarity=0.053  Sum_probs=176.4

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +..+|..+..++.+.|++++|++.|.+.      -|...|..++.++.+.|++++|.+++.... +..  ++....+.++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mAr-k~~--~e~~Idt~La 1174 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKA--RESYVETELI 1174 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhc--ccccccHHHH
Confidence            4666777777777778888887777553      266677777777778888888877777665 323  2222233477


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      .+|++.+++++.....    +   .++. ..|..+...|...|++++|..+|...        ..|..+...+++.|+++
T Consensus      1175 faYAKl~rleele~fI----~---~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A         1175 FALAKTNRLAELEEFI----N---GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred             HHHHhhcCHHHHHHHH----h---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHH
Confidence            7777777776433332    1   2344 45666777788888888888888732        36777888888888888


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .|.+.+++.      .+..+|..+..+|...|++..|......+.     .++..+..++..|.+.|.+++|+.+++..+
T Consensus      1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A         1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred             HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            888877765      244677777777777788777777655422     356677899999999999999999999887


Q ss_pred             HHhcccccCCC-CHHHHHHHHHHHHh--cCChhhHHHHHHHHhhCCC-----CCchhHHHHh-hhhhcC--cchH
Q 018924          252 AAYQTLVKWKP-SVESLAACLDYFKD--EGDIGGAENFIELLNDKGF-----IPTDLQDKLL-DNVQNG--KSNL  315 (349)
Q Consensus       252 ~~~~~~~~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~-~~~~~g--~~a~  315 (349)
                             ++.| ....|+-+...|++  .++..++.+.|..-....+     .+...|..++ .|.+.|  +.|.
T Consensus      1308 -------~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1308 -------GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             -------ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence                   4444 34556555555544  4556666666553322211     2456788899 999888  6666

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.50  E-value=2.1e-12  Score=117.73  Aligned_cols=166  Identities=14%  Similarity=0.110  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      +..+|+.|...|.+.|++++|++.|++..+.  .|+...+|..+..+|.+.|++++|+..|+....-.+-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3455666666666677777777776666653  44444566666666666666666666666333333334455666666


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  242 (349)
                      ++...|++++|.+.|++..+.. +-+...|+.+..+|...|++++|...|++..+..+. +...|..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            6666666666666666665543 233455566666666666666666666666654332 34455566666666666666


Q ss_pred             HHHHHHHHHH
Q 018924          243 AVEAMKKVLA  252 (349)
Q Consensus       243 a~~~~~~~~~  252 (349)
                      |.+.++++++
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=7.4e-12  Score=94.74  Aligned_cols=163  Identities=17%  Similarity=0.094  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL  129 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (349)
                      .+..+...+...|++++|...++++. +... .+..++..+...+...|++++|.+.++++.+.  .|+...++..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   85 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            44555555666666666666666655 3222 34555566666666666666666666666553  23322456666666


Q ss_pred             HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHH
Q 018924          130 YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAE  209 (349)
Q Consensus       130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  209 (349)
                      +...|++++|.+.++......+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            6666666666666663333334444555555666666666666666666655543 333455555666666666666666


Q ss_pred             HHHHHHHH
Q 018924          210 NLVNHEKL  217 (349)
Q Consensus       210 ~~~~~~~~  217 (349)
                      ..+++..+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.49  E-value=2.7e-12  Score=117.03  Aligned_cols=166  Identities=8%  Similarity=-0.065  Sum_probs=145.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHH
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVI  126 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  126 (349)
                      +..+|+.+..++.+.|++++|++.|++.. +... -+..+|+.+..+|.+.|++++|++.|++..+.  .|+...+|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl-~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKAL-EVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            35689999999999999999999999988 4333 45788999999999999999999999999884  56665799999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  206 (349)
                      ..++...|++++|++.|+....-.+-+...|..+..++...|++++|.+.|++..+.. +-+...+..+..+|...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999995444455567889999999999999999999999999864 445678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 018924          207 KAENLVNHEKL  217 (349)
Q Consensus       207 ~a~~~~~~~~~  217 (349)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998887

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=2.6e-12  Score=104.24  Aligned_cols=228  Identities=15%  Similarity=0.055  Sum_probs=152.4

Q ss_pred             HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcC------CCCCccHHHHHHH
Q 018924           24 YKTGNFEKLDSLMHEMEEN-------GITYDRYTYCTRLSAYADASDHEGIDKILTMMEAD------PNVALDWVIYATV   90 (349)
Q Consensus        24 ~~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l   90 (349)
                      ...|++++|+..|++..+.       +.+....++..+..++...|++++|...+++....      .+.+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4568888888888877652       11223557888999999999999999999887622      2233456678889


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhh-----c-CCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHh---h----ccCChhh
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQI-----K-GAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKK---A----VKVLNNG  156 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~---~----~~~~~~~  156 (349)
                      ...|...|++++|.+.|++..+..     . .|....++..+...+...|++++|...++ ....   .    .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999987641     1 24444688899999999999999999998 3222   1    2223457


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCC-cchHHHHHHHHHhcCcH------HHHHHHHHHHHHcCccc
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQ-------ALCYD-TRIPNFLIDVYCRNGLL------EKAENLVNHEKLKGREI  222 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~  222 (349)
                      +..+...+...|++++|...+++..+.       ...+. ...+..+...+...+..      ..+...++..... ...
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            888889999999999999999888753       11222 23333333333332222      2222222222111 112


Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      ...++..+...|...|++++|..+|+++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677788888889999999988888764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.49  E-value=5.5e-12  Score=95.47  Aligned_cols=166  Identities=14%  Similarity=0.019  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      ...+..+...+...|++++|.+.|+++.+.  .|+...++..+...+...|++++|...++......+.+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            455667888888899999999999888764  333336788888888899999999998884444445566778888888


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      +...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence            888899999999888887764 456677778888888888999998888888876532 567788888888888888888


Q ss_pred             HHHHHHHHHH
Q 018924          244 VEAMKKVLAA  253 (349)
Q Consensus       244 ~~~~~~~~~~  253 (349)
                      .+.++++.+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.48  E-value=3.4e-12  Score=103.57  Aligned_cols=233  Identities=12%  Similarity=0.073  Sum_probs=154.0

Q ss_pred             hcCChHHHHHHHHHhhc------CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhhHHHHH
Q 018924           60 DASDHEGIDKILTMMEA------DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSAYNVIL  127 (349)
Q Consensus        60 ~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~  127 (349)
                      ..|++++|...+++...      ..+.+....++..+...|...|++++|...+++..+.      +..|....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            44565555555554431      3333346777889999999999999999999998765      22344446899999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHhh--------ccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCCcchH
Q 018924          128 TLYGKYGKKDDVLRIWELYKKA--------VKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQ------A-LCYDTRIP  192 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~  192 (349)
                      ..+...|++++|...++.....        .+....++..+...+...|++++|...++++.+.      + .+....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999822221        1233467888999999999999999999998764      1 12234567


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC-------cccc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-C
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKG-------REIH-VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-S  263 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~  263 (349)
                      ..+...|...|++++|...+++..+..       ..+. ...|..+...+...+....+.. +..+...........| .
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHH
Confidence            889999999999999999999887631       1122 2233333333333333222222 2222111000011223 3


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          264 VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ..++..+...|...|++++|..++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467788888999999999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=2.3e-11  Score=103.49  Aligned_cols=233  Identities=14%  Similarity=0.056  Sum_probs=141.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CC-CCC-ccHHHHH
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGI-TYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DP-NVA-LDWVIYA   88 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~-~~~~~~~   88 (349)
                      ....+...|++++|+..|++..+... .++    ..++..+..+|...|+++.|...+++...   +. +.. ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34455677888888888887765311 112    23667777777788888888777766541   11 111 1245566


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh-----hccCChhhHHH
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK-----AVKVLNNGYRN  159 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  159 (349)
                      .+..+|...|++++|.+.|++..+...    .+....++..+..+|...|++++|+..++....     +.+....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            777788888888888888777665321    111224667777778888888888887773222     33333456777


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCc---HHHHHHHHHHHHHcCcccchhhHHHHHH
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCY----DTRIPNFLIDVYCRNGL---LEKAENLVNHEKLKGREIHVKSWYYLAT  232 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~  232 (349)
                      +...+.+.|++++|...+++..+.....    ....+..+...|...++   +++|...++....  .......+..+..
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~  344 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence            7777778888888888887776532111    11234444445555666   5566665554211  1112334556777


Q ss_pred             HHhcCCCHHHHHHHHHHHHHH
Q 018924          233 GYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .|...|++++|.+.|+++.+.
T Consensus       345 ~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH
Confidence            777777877777777777643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=1.5e-11  Score=96.73  Aligned_cols=128  Identities=9%  Similarity=-0.102  Sum_probs=58.4

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVK-VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYC  200 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  200 (349)
                      .+......+...|++++|+..|+......+ ++...+..+..++...|++++|...+++..+.. +.+...+..+..+|.
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence            344444444444444444444442222222 333333334444444444444444444444432 122334444445555


Q ss_pred             hcCcHHHHHHHHHHHHHcCcccch-------hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          201 RNGLLEKAENLVNHEKLKGREIHV-------KSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       201 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      ..|++++|...+++..+..+. +.       ..|..+...+...|++++|++.|++++
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence            555555555555554443221 12       234455555566666666666666665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=1.9e-11  Score=96.18  Aligned_cols=198  Identities=7%  Similarity=-0.070  Sum_probs=152.1

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .|+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|+..+++.. +.+. .+..+|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KKNY-NLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC-SHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhCc-chHHHHHHH
Confidence            35688889999999999999999999999987654678888889999999999999999999988 4343 467788899


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcch-------hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccC--ChhhHHHHH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVN-------SAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--LNNGYRNVI  161 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li  161 (349)
                      ..+|...|++++|.+.|++..+.  .|+..       .+|..+...+...|++++|+..|+......+.  +...+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence            99999999999999999999885  44543       35888888999999999999999943333333  346677777


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                      .++...|     ..+++++...+ ..+...|....  ....+.+++|...|++..+..+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence            7775543     44556665543 23333443333  3446778999999999998653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.45  E-value=1.4e-10  Score=98.28  Aligned_cols=266  Identities=13%  Similarity=0.057  Sum_probs=183.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhH
Q 018924           52 CTRLSAYADASDHEGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAY  123 (349)
Q Consensus        52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~  123 (349)
                      ......+...|++++|...+++..... ...+.    .+++.+...+...|++++|.+.+++..........    ..++
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344456678899999999999876232 22222    24667788899999999999999998764332222    1235


Q ss_pred             HHHHHHHhhcCCHHHHHHHHH-HHHh----hcc--C-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC----Ccch
Q 018924          124 NVILTLYGKYGKKDDVLRIWE-LYKK----AVK--V-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY----DTRI  191 (349)
Q Consensus       124 ~~l~~~~~~~~~~~~a~~~~~-~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~  191 (349)
                      ..+...+...|++++|...++ ....    +.+  | ....+..+...+...|++++|...+++..+.....    ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            678888999999999999998 2221    111  2 22456678888999999999999999987643211    1245


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch-hhHH-----HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCC---C
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV-KSWY-----YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWK---P  262 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---p  262 (349)
                      +..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|..++++....     ...   .
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~  251 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-----EFANNHF  251 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-----CCTTCGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-----CCCcchh
Confidence            677888899999999999999988754222211 1222     2334477899999999999987642     111   1


Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-Cc-hhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          263 SVESLAACLDYFKDEGDIGGAENFIELLNDK----GFI-PT-DLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       263 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      ....+..+...+...|++++|...++.....    +.+ .. ..+..+. ++...|  ++|...+++...
T Consensus       252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            1335667778899999999999999887654    211 11 2444555 777777  788888877654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.45  E-value=1.3e-11  Score=107.40  Aligned_cols=278  Identities=17%  Similarity=0.090  Sum_probs=148.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDH---EGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      +...+.+.|++++|+++|++..+.|   +...+..+...|...|+.   ++|..+|++.. +.    +...+..|...+.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~-~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAA-DT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-hC----CHHHHHHHHHHHH
Confidence            5566677788888888888877665   233444455555556666   77777777766 32    3334445555444


Q ss_pred             hcC-----cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh-----------------------------------cCC
Q 018924           96 KVG-----LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK-----------------------------------YGK  135 (349)
Q Consensus        96 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~~  135 (349)
                      ..|     +.++|.+.|++..+.|..    .++..|...|..                                   .+.
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~----~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEG----NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCS----SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTC
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence            444     667777777776653321    233344444433                                   232


Q ss_pred             HHHHHHHHH-HHHhhccCChhhHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CcHHH
Q 018924          136 KDDVLRIWE-LYKKAVKVLNNGYRNVISSLLKLD---DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----GLLEK  207 (349)
Q Consensus       136 ~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  207 (349)
                      ++.+..... ........++..+..+...|...|   +.++|.+.|+...+.| .++...+..|...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            222222211 111111233346677777777777   7778888888877766 44444445566666544    57788


Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHH-H--hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC-----C
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATG-Y--RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG-----D  279 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~  279 (349)
                      |..+|++.. .|   ++..+..+... +  ...+++++|.++|++..+.     +   +...+..|...|. .|     +
T Consensus       236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g---~~~A~~~Lg~~y~-~G~g~~~d  302 (452)
T 3e4b_A          236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D---QPRAELLLGKLYY-EGKWVPAD  302 (452)
T ss_dssp             HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred             HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHH-cCCCCCCC
Confidence            888888776 32   44555556555 3  4577888888888887764     4   4555555555554 44     7


Q ss_pred             hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhc-----C-cchHHHHHHHHhCC
Q 018924          280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQN-----G-KSNLETLRELYGNS  325 (349)
Q Consensus       280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-----g-~~a~~~~~~m~~~~  325 (349)
                      +++|...|++..   +.+...+..+. .|...     . ++|...|++..+.|
T Consensus       303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            777777777766   33445555555 55441     1 56777777766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.39  E-value=6.3e-11  Score=96.93  Aligned_cols=206  Identities=8%  Similarity=-0.043  Sum_probs=131.1

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCCc-cHHHHHHHHHHHhhcCcHHHHH
Q 018924           29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVAL-DWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        29 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~li~~~~~~g~~~~a~  104 (349)
                      +++|...|++.               ...|...|++++|...|++...   +.+-++ ...+|+.+..+|.+.|++++|+
T Consensus        33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            66666666554               4456677888888887776541   112212 2467778888888888888888


Q ss_pred             HHHHHHHHhhcCCc----chhhHHHHHHHHhhc-CCHHHHHHHHHHHHhhccC--C----hhhHHHHHHHHhccCCHHHH
Q 018924          105 AMLKKSEEQIKGAK----VNSAYNVILTLYGKY-GKKDDVLRIWELYKKAVKV--L----NNGYRNVISSLLKLDDLESA  173 (349)
Q Consensus       105 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a  173 (349)
                      ..|++..+......    ...+++.+...|... |++++|+..|+....-.+.  +    ..++..+...+...|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            88887765432211    124677788888885 8888888888822221111  1    24577778888888888888


Q ss_pred             HHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch------hhHHHHHHHHh--cCCC
Q 018924          174 EKIFEEWESQALCYDTR------IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV------KSWYYLATGYR--QNSQ  239 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~~~  239 (349)
                      ...|++..+........      .+..+..++...|++++|...|++..+..  |+.      ..+..++.+|.  ..++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            88888887754322221      35667777888888888888888776532  221      12344555554  4566


Q ss_pred             HHHHHHHHHHHH
Q 018924          240 IHKAVEAMKKVL  251 (349)
Q Consensus       240 ~~~a~~~~~~~~  251 (349)
                      +++|+..|+.+.
T Consensus       256 ~~~A~~~~~~~~  267 (292)
T 1qqe_A          256 LSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHhccCC
Confidence            777777776654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.39  E-value=2.2e-10  Score=99.59  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhcC---cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc----CCHHHHHHHHHHHHhhccCChhhHH
Q 018924           86 IYATVGNGYGKVG---LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY----GKKDDVLRIWELYKKAVKVLNNGYR  158 (349)
Q Consensus        86 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~  158 (349)
                      .+..|...|.+.|   +.++|++.|++..+.|. ++. ..+..|...|...    +++++|+..|+...   +-+...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a-~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA-QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            4444555555555   55555555555554432 111 2334444444333    45555555555221   23333444


Q ss_pred             HHHHH-H--hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-----cHHHHHHHHHHHHHcCcccchhhHHHH
Q 018924          159 NVISS-L--LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-----LLEKAENLVNHEKLKGREIHVKSWYYL  230 (349)
Q Consensus       159 ~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l  230 (349)
                      .+... +  ...+++++|.+.|++..+.|   +...+..|...|. .|     ++++|..+|++.. .|   ++..+..|
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L  324 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL  324 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence            44443 2  34555555555555555443   3334444444444 33     5555555555544 22   33444444


Q ss_pred             HHHHhc----CCCHHHHHHHHHHHHH
Q 018924          231 ATGYRQ----NSQIHKAVEAMKKVLA  252 (349)
Q Consensus       231 i~~~~~----~~~~~~a~~~~~~~~~  252 (349)
                      ...|..    ..++++|..+|++..+
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            444443    2255555555555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=3.5e-11  Score=98.44  Aligned_cols=235  Identities=11%  Similarity=-0.015  Sum_probs=159.3

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHH
Q 018924           30 EKLDSLMHEMEENGITYDRYTYCTRLSAYADA--S-DHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAM  106 (349)
Q Consensus        30 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  106 (349)
                      .+|.+++.+..+. .+++...| .++    +.  + ++++|...|++.                ...|...|++++|...
T Consensus         2 ~~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~   59 (292)
T 1qqe_A            2 SDPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDS   59 (292)
T ss_dssp             CCHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHH
T ss_pred             CcHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHH
Confidence            3567777777665 33222223 222    32  2 478888887766                3457789999999999


Q ss_pred             HHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CC----hhhHHHHHHHHhcc-CCHHHHHH
Q 018924          107 LKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VL----NNGYRNVISSLLKL-DDLESAEK  175 (349)
Q Consensus       107 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~-~~~~~a~~  175 (349)
                      |++..+...    .+....+|+.+..+|...|++++|+..|+....-.+  .+    ..++..+...|... |++++|..
T Consensus        60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~  139 (292)
T 1qqe_A           60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID  139 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            998866421    122236899999999999999999999982221111  11    34688888999986 99999999


Q ss_pred             HHHHHHhcCCCC-C----cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchh------hHHHHHHHHhcCCCHHHHH
Q 018924          176 IFEEWESQALCY-D----TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVK------SWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       176 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~  244 (349)
                      .|++..+..... +    ..+++.+...|.+.|++++|...|++..+..+.....      .|..+..++...|++++|.
T Consensus       140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999987642111 1    3467888999999999999999999998855432221      5677788889999999999


Q ss_pred             HHHHHHHHHhcccccCCCCHH------HHHHHHHHHH--hcCChhhHHHHHHHHhhC
Q 018924          245 EAMKKVLAAYQTLVKWKPSVE------SLAACLDYFK--DEGDIGGAENFIELLNDK  293 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~  293 (349)
                      ..|++.+       .+.|+..      .+..++.++.  ..+++++|...|+.+...
T Consensus       220 ~~~~~al-------~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          220 RTLQEGQ-------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             HHHHGGG-------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHH-------hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence            9999987       4455422      3444555553  345566676666555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.33  E-value=1.1e-09  Score=88.25  Aligned_cols=254  Identities=13%  Similarity=0.007  Sum_probs=160.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      |+-..-.|.+..++.-   ..+.........-.-+.+++...|+++..          ....|....+..+...+ ..+ 
T Consensus        20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~~~-~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQFL-DTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred             HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHHHh-ccc-
Confidence            3455567888888873   33222121223334456778888876631          12224544544444443 322 


Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc--CChhhHHHHHHHHhccCCHHHHHHHH
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK--VLNNGYRNVISSLLKLDDLESAEKIF  177 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~  177 (349)
                         |+..|++..+.+ .++. .++..+..++...|++++|++++.......+  -+...+..++..+.+.|+.+.|.+.+
T Consensus        85 ---a~~~l~~l~~~~-~~~~-~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 ---NIEELENLLKDK-QNSP-YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             ---CCHHHHHTTTTS-CCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC-CCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               677787776543 2333 5667888889999999999999983322221  34456778888999999999999999


Q ss_pred             HHHHhcCCCC-----CcchHHHHHHHH--Hh--cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          178 EEWESQALCY-----DTRIPNFLIDVY--CR--NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       178 ~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      ++|.+.  .|     +..+...|..++  ..  .+++++|..+|+++.+..  |+..+-..++.++.+.|++++|.+.++
T Consensus       160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence            999774  45     234444555552  22  338999999999987654  442233344447888999999999998


Q ss_pred             HHHHHhcccc---cCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          249 KVLAAYQTLV---KWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       249 ~~~~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      .+.+.++...   +..| |+.++..+|......|+  +|.++++++....|.++.
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence            7664311000   0024 56667677766667786  888999999888765543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=2.6e-10  Score=88.22  Aligned_cols=167  Identities=13%  Similarity=0.053  Sum_probs=97.2

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH----------------HHHHHhhcCCHHHHHHHHHHHHhhccCC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV----------------ILTLYGKYGKKDDVLRIWELYKKAVKVL  153 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~  153 (349)
                      ....+...|++++|+..|++..+.  .|+...+|..                +..++...|++++|+..|+......+.+
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   87 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN   87 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            344455556666666666655543  2332234444                7777777777777777777444444455


Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc--HHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924          154 NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL--LEKAENLVNHEKLKGREIHVKSWYYLA  231 (349)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li  231 (349)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|+  .+.+...++....  +.|....+....
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g  164 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG  164 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence            6667777777777777777777777777653 3345566666666655443  3344444544432  222222333445


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHH
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLA  268 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  268 (349)
                      .++...|++++|...|++++       .+.|+.....
T Consensus       165 ~~~~~~~~~~~A~~~~~~al-------~l~P~~~~~~  194 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVI-------LRFPSTEAQK  194 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHT-------TTSCCHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHH-------HhCCCHHHHH
Confidence            55556677788888888777       5567654433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.30  E-value=3.5e-10  Score=90.82  Aligned_cols=188  Identities=9%  Similarity=-0.117  Sum_probs=105.9

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhcCC-CCCccHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD---RYTYCTRLSAYADASDHEGIDKILTMMEADP-NVALDWVIY   87 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~   87 (349)
                      +...+-.+...+.+.|++++|+..|+++.+.... +   ...+..+..++.+.|++++|...|++..... +-+....++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4555566666677777777777777777665321 2   4466666667777777777777777765211 111224455


Q ss_pred             HHHHHHHhh--------cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924           88 ATVGNGYGK--------VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRN  159 (349)
Q Consensus        88 ~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  159 (349)
                      ..+..++..        .|++++|...|+++.+.  .|+.......+.......       ..+          ...+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~-------~~~----------~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELR-------AKL----------ARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH-------HHH----------HHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHH-------HHH----------HHHHHH
Confidence            566666666        77777777777777664  233312322221110000       000          011345


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhc----------CcHHHHHHHHHHHHHcC
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCY--DTRIPNFLIDVYCRN----------GLLEKAENLVNHEKLKG  219 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~  219 (349)
                      +...|.+.|++++|...|+.+.+.....  ....+..+..+|...          |++++|...|+++.+..
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            5666777777777777777776643111  123455566666654          67777777777777643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=3.5e-10  Score=90.84  Aligned_cols=187  Identities=11%  Similarity=-0.021  Sum_probs=115.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc---HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC-Ccchhh
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD---WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG-AKVNSA  122 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~  122 (349)
                      +...+..+...+.+.|++++|...|+++. +... .+   ...+..+..+|.+.|++++|...|++..+..+. +....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            44566666667777788888888877776 3221 12   556667777777778888888877777765331 122245


Q ss_pred             HHHHHHHHhh--------cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHH
Q 018924          123 YNVILTLYGK--------YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNF  194 (349)
Q Consensus       123 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  194 (349)
                      +..+..++..        .|++++|+..|+......+.+......+..              +..+...    -...+..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~  153 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK--------------IRELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence            6666667766        777777777777333333322222222111              0000000    0011455


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCccc--chhhHHHHHHHHhcC----------CCHHHHHHHHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGREI--HVKSWYYLATGYRQN----------SQIHKAVEAMKKVLAA  253 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~  253 (349)
                      +...|.+.|++++|...|+.+.+..+..  ....+..+..+|...          |++++|...|+++++.
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            7778888999999999999888754321  234566777777755          8889999999998865

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.29  E-value=9.1e-10  Score=88.81  Aligned_cols=248  Identities=10%  Similarity=-0.002  Sum_probs=168.4

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924           55 LSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      ++-..-.|++..++.-...+.   ...++ ..-.-+.++|...|+++...         ...|.. .++..+.. |...+
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~---~~~~~-~~~~~~~Rs~iAlg~~~~~~---------~~~~~~-~a~~~la~-~~~~~   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFS---KVTDN-TLLFYKAKTLLALGQYQSQD---------PTSKLG-KVLDLYVQ-FLDTK   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSS---CCCCH-HHHHHHHHHHHHTTCCCCCC---------SSSTTH-HHHHHHHH-HHTTT
T ss_pred             HHHHHHhhHHHHHHHHHHhcC---ccchH-HHHHHHHHHHHHcCCCccCC---------CCCHHH-HHHHHHHH-Hhccc
Confidence            344556799998887444333   22233 23334568888888776421         112222 24333333 33322


Q ss_pred             CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924          135 KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFLIDVYCRNGLLEKAENLVN  213 (349)
Q Consensus       135 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  213 (349)
                          |+..|+......+++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+++.|.+.++
T Consensus        85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~  160 (310)
T 3mv2_B           85 ----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD  160 (310)
T ss_dssp             ----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                67777732222245666667888999999999999999999877653 2356677889999999999999999999


Q ss_pred             HHHHcCccc-----chhhHHHHHHH--Hhc--CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHH
Q 018924          214 HEKLKGREI-----HVKSWYYLATG--YRQ--NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE  284 (349)
Q Consensus       214 ~~~~~~~~~-----~~~~~~~li~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  284 (349)
                      +|.+..  |     +..+...++.+  ...  .+++.+|..+|+++.+       ..|+..+...++.++.+.|++++|+
T Consensus       161 ~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-------~~p~~~~~~lLln~~~~~g~~~eAe  231 (310)
T 3mv2_B          161 NYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-------TFPTWKTQLGLLNLHLQQRNIAEAQ  231 (310)
T ss_dssp             HHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-------TSCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------hCCCcccHHHHHHHHHHcCCHHHHH
Confidence            998853  5     34555556655  232  3489999999999874       3676445455666899999999999


Q ss_pred             HHHHHHhhC----------CCCCchhHHHHh-hhhhcCcchHHHHHHHHhCCCCCCccc
Q 018924          285 NFIELLNDK----------GFIPTDLQDKLL-DNVQNGKSNLETLRELYGNSLAGNEET  332 (349)
Q Consensus       285 ~~~~~~~~~----------~~~~~~~~~~l~-~~~~~g~~a~~~~~~m~~~~~~p~~~t  332 (349)
                      ..++.+.+.          .+.++.+...++ .....|++|.+++.++.+.  .|+...
T Consensus       232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~  288 (310)
T 3mv2_B          232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF  288 (310)
T ss_dssp             HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred             HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence            999977654          355677776666 5555677899999999885  566543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=5.6e-10  Score=79.39  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            333344444444444444444444332211 23333444444444444444444444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=6e-10  Score=79.23  Aligned_cols=129  Identities=17%  Similarity=0.170  Sum_probs=75.8

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      |..+...+...|++++|..+++++.+..  |+...++..+...+...|++++|...++......+.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            4455566666666666666666665532  22224556666666666666666666663223333344555666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++...
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            666666666666666543 334455666666666677777777776666553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.25  E-value=3.5e-10  Score=87.56  Aligned_cols=96  Identities=11%  Similarity=-0.034  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHhh
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYD-RYTYCT----------------RLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      +..+-.....+.+.|++++|+..|++..+..  |+ ...|..                +..++.+.|++++|...|++..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444455566778899999999998888753  33 334443                4444444444444444444443


Q ss_pred             cCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           76 ADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        76 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                       +.+. -+...+..+..++...|++++|...|++..+
T Consensus        82 -~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  116 (208)
T 3urz_A           82 -QKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ  116 (208)
T ss_dssp             -HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             2111 2333444444444444444444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=5.6e-09  Score=81.78  Aligned_cols=209  Identities=11%  Similarity=-0.006  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-hhhHHH
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL-DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-NSAYNV  125 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~  125 (349)
                      ...+..+...+...|++++|...|+++.....-.| ....+..+..+|.+.|++++|+..|+++.+..+.... ..++..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34455556667777777777777777662211112 2345666777777777777777777777764332211 013444


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCc
Q 018924          126 ILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT-RIPNFLIDVYCRNGL  204 (349)
Q Consensus       126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  204 (349)
                      +..++...+..     .+           ..|..+...+...|++++|...|+++.+..  |+. ..+......      
T Consensus        84 ~g~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l------  139 (225)
T 2yhc_A           84 RGLTNMALDDS-----AL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL------  139 (225)
T ss_dssp             HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH------
T ss_pred             HHHHHHhhhhh-----hh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH------
Confidence            44444332211     00           112223334455778888888888887753  333 222221110      


Q ss_pred             HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----HHHHHHHHHHHHhcCCh
Q 018924          205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----VESLAACLDYFKDEGDI  280 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~  280 (349)
                          ..+...+.        .....+...|.+.|++++|+..|+++++.       .|+    ...+..+..++.+.|+.
T Consensus       140 ----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          140 ----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD-------YPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             ----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             ----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------CcCCCccHHHHHHHHHHHHHcCCc
Confidence                00111111        11234567788899999999999999865       443    25677888899999999


Q ss_pred             hhHHHHHHHHhhCCCCCch
Q 018924          281 GGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       281 ~~a~~~~~~~~~~~~~~~~  299 (349)
                      ++|.+.++.+...++.+..
T Consensus       201 ~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          201 AQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHhhCCCchh
Confidence            9999999988887765543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.21  E-value=9.1e-10  Score=100.71  Aligned_cols=176  Identities=10%  Similarity=-0.111  Sum_probs=137.1

Q ss_pred             HhcCChHHHHHHHHHhhc-----C-CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           59 ADASDHEGIDKILTMMEA-----D-PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        59 ~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      ...|++++|++.+++...     . ...+.+...+..+...+...|++++|++.|++..+.  .|+...+|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            678899999999988751     0 122345677888889999999999999999999875  34444789999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHH
Q 018924          133 YGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLV  212 (349)
Q Consensus       133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  212 (349)
                      .|++++|+..|+......+.+...+..+..++.+.|++++ ...|++..+.+ +.+...|..+..++.+.|++++|...|
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999995555555567788899999999999999 99999988864 445678888999999999999999999


Q ss_pred             HHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924          213 NHEKLKGREIHVKSWYYLATGYRQNSQ  239 (349)
Q Consensus       213 ~~~~~~~~~~~~~~~~~li~~~~~~~~  239 (349)
                      ++..+.++. +...+..+..++...++
T Consensus       558 ~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            988875432 45667777777777665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.20  E-value=8.9e-10  Score=100.76  Aligned_cols=173  Identities=11%  Similarity=-0.058  Sum_probs=143.7

Q ss_pred             hhcCcHHHHHHHHHHHH--------HhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhc
Q 018924           95 GKVGLLDKALAMLKKSE--------EQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLK  166 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  166 (349)
                      ...|++++|++.+++..        +  ..|+....+..+..++...|++++|+..|+......+.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence            78899999999999987        4  3455547899999999999999999999995555556677889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHH
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      .|++++|...|++..+.. +.+...+..+..+|.+.|++++ ...|++..+.++. +...|..+..++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999864 4467788999999999999999 9999999987654 677899999999999999999999


Q ss_pred             HHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCC
Q 018924          247 MKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGD  279 (349)
Q Consensus       247 ~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~  279 (349)
                      |+++.       .+.|+ ...+..+..++...++
T Consensus       557 ~~~al-------~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVP-------PTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSC-------TTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhc-------ccCcccHHHHHHHHHHHHccCC
Confidence            99987       55775 4566667777666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.20  E-value=1.3e-10  Score=84.90  Aligned_cols=56  Identities=16%  Similarity=0.209  Sum_probs=22.0

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +...|.+.|++++|...|++..+..+. +..+|..+...|...|++++|+..|++++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            333344444444444444443333221 23333334444444444444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.17  E-value=1.5e-08  Score=79.32  Aligned_cols=188  Identities=9%  Similarity=-0.047  Sum_probs=128.3

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc-HHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT-Y-DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALD-WVIYA   88 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~   88 (349)
                      +...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.....-.+. ...+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3455666778899999999999999999986432 1 1357888899999999999999999998722211122 12444


Q ss_pred             HHHHHHhh------------------cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924           89 TVGNGYGK------------------VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAV  150 (349)
Q Consensus        89 ~li~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  150 (349)
                      .+..++..                  .|++++|...|+++.+.  .|+...++.......          .+.....   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH---
Confidence            45555543                  57899999999998875  455433443322110          0011000   


Q ss_pred             cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                          .....+...+.+.|++++|...|+.+.+..  |+.    ..+..+..+|.+.|++++|...++.+...++
T Consensus       148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                012345677888899999999999988753  332    4577788899999999999999998887653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.17  E-value=3.2e-10  Score=82.78  Aligned_cols=143  Identities=8%  Similarity=-0.038  Sum_probs=73.5

Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      ..+...|++++|+..++.....  .|+.+..+..+...|...|++++|++.|+......+-+..+|..+..++...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            3444555566666666555442  22222345556666666666666666666333333444555666666666666666


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHH-HHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENL-VNHEKLKGREIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~  238 (349)
                      +|...|++..+.. +.+...+..+...|.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus        83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            6666666665543 23345555566666666665544433 3555553322 3444444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.15  E-value=1.7e-09  Score=97.07  Aligned_cols=153  Identities=10%  Similarity=-0.075  Sum_probs=116.1

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI  176 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  176 (349)
                      .|++++|.+.|++..+.  .|+...+|..+...+...|++++|...|+......+.+...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999998874  4554478999999999999999999999955555556678899999999999999999999


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Q 018924          177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN---SQIHKAVEAMKKVLAA  253 (349)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~  253 (349)
                      +++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+...+...   |++++|.+.++++++.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998864 445778889999999999999999999999986543 567888899999999   9999999999999975

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.14  E-value=1.6e-07  Score=84.97  Aligned_cols=213  Identities=9%  Similarity=0.005  Sum_probs=149.3

Q ss_pred             HHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH-HHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          104 LAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL-RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      ..+|++....  .|..+..|...+..+...|+.++|. ++|+.....++.+...|...+...-+.|+++.|.++|+.+.+
T Consensus       329 ~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          329 TYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3445555443  2223256667777777788888886 999854555666666677788888889999999999999876


Q ss_pred             cC---------CCCC------------cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc-CCCH
Q 018924          183 QA---------LCYD------------TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ-NSQI  240 (349)
Q Consensus       183 ~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~  240 (349)
                      ..         -.|+            ..+|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+ .++.
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence            31         0132            235777788888889999999999999875111123333332222233 3458


Q ss_pred             HHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---CchhHHHHh-hhhhcC--cch
Q 018924          241 HKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI---PTDLQDKLL-DNVQNG--KSN  314 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~-~~~~~g--~~a  314 (349)
                      +.|..+|+..++.      ..-+...+...++.....|+.+.|+.+|++.....++   ....|...+ .-.+.|  +.+
T Consensus       487 e~Ar~ife~~Lk~------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          487 KTACKVLELGLKY------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             HHHHHHHHHHHHH------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999874      2235566677888888899999999999999887653   334677777 666778  788


Q ss_pred             HHHHHHHHhC
Q 018924          315 LETLRELYGN  324 (349)
Q Consensus       315 ~~~~~~m~~~  324 (349)
                      ..+.+++.+.
T Consensus       561 ~~v~~R~~~~  570 (679)
T 4e6h_A          561 RTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.14  E-value=3.3e-09  Score=95.22  Aligned_cols=154  Identities=8%  Similarity=-0.076  Sum_probs=112.7

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHH
Q 018924           26 TGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALA  105 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  105 (349)
                      .|++++|++.|++..+... -+...|..+...+...|++++|.+.+++.. +... .+...+..+..+|...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHP-GHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4788999999999877632 256788889999999999999999999988 5443 457788889999999999999999


Q ss_pred             HHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc---CCHHHHHHHHHHHHh
Q 018924          106 MLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL---DDLESAEKIFEEWES  182 (349)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~  182 (349)
                      .|++..+.  .|+...++..+..++...|++++|.+.|+......+.+...+..+...+...   |+.++|.+.+++..+
T Consensus        79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            99999875  4554478999999999999999999999954444555667888889999999   999999999999887


Q ss_pred             cC
Q 018924          183 QA  184 (349)
Q Consensus       183 ~~  184 (349)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            65

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=8.6e-10  Score=82.86  Aligned_cols=160  Identities=9%  Similarity=-0.112  Sum_probs=89.5

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH-Hhcc
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKL  167 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~  167 (349)
                      .+...+...|++++|...|++..+.  .|+...++..+...+...|++++|+..++.... ..|+...+...... +...
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccCChHHHHHHHHHHHHhh
Confidence            4555566666666666666665553  233335666666666666666666666662111 11232222211111 1111


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhHHHHHHHHhcCCCHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSWYYLATGYRQNSQIHKAVEA  246 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~  246 (349)
                      +....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            22233566666666543 3345666667777777777777777777776654332 244566677777777777777777


Q ss_pred             HHHHHH
Q 018924          247 MKKVLA  252 (349)
Q Consensus       247 ~~~~~~  252 (349)
                      |++.+.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.13  E-value=2.4e-09  Score=87.23  Aligned_cols=164  Identities=9%  Similarity=-0.067  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhH-HHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGY-RNVIS  162 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~li~  162 (349)
                      ...+..+...+...|++++|...|++..+.  .|+...++..+...+...|++++|...++... ...|+.... .....
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQDQDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GGGCSHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hhhcchHHHHHHHHH
Confidence            334444555555566666666666655553  33333455555556666666666665555111 112222211 11122


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-chhhHHHHHHHHhcCCCHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-HVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~  241 (349)
                      .+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.+..+.. +...+..++..|...|+.+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            2334445555555555555442 3344455555555555566666666555555543221 1344555555555555555


Q ss_pred             HHHHHHHHHH
Q 018924          242 KAVEAMKKVL  251 (349)
Q Consensus       242 ~a~~~~~~~~  251 (349)
                      +|...|++.+
T Consensus       273 ~a~~~~r~al  282 (287)
T 3qou_A          273 ALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            5555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=1.5e-09  Score=81.59  Aligned_cols=161  Identities=11%  Similarity=0.079  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH-H
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV-Y  199 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  199 (349)
                      ..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++.+.+..  |+...+..+... +
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            3566777888889999999999883333344556778888888889999999999998876643  344333222211 1


Q ss_pred             HhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC---HHHHHHHHHHHHh
Q 018924          200 CRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS---VESLAACLDYFKD  276 (349)
Q Consensus       200 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~  276 (349)
                      ...+....|...+++..+..+. +...+..+...+...|++++|...|+++++       ..|+   ...+..+...+..
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK-------VNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTTTTTHHHHHHHHHHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCcccChHHHHHHHHHHHHH
Confidence            2222334467788887775543 567788888888888999999988888884       3543   4577788888888


Q ss_pred             cCChhhHHHHHHHHh
Q 018924          277 EGDIGGAENFIELLN  291 (349)
Q Consensus       277 ~g~~~~a~~~~~~~~  291 (349)
                      .|+.++|...|++..
T Consensus       157 ~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          157 LGQGNAIASKYRRQL  171 (176)
T ss_dssp             HCSSCHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHH
Confidence            888888888887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=5.3e-09  Score=86.09  Aligned_cols=232  Identities=9%  Similarity=0.006  Sum_probs=150.3

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924           25 KTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  104 (349)
                      ..|++++|.+++++..+... ..      +   +...++++.|...|++.                ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence            35778888888888765421 11      0   11146677777766654                34677888999998


Q ss_pred             HHHHHHHHhhcCC----cchhhHHHHHHHHhhcCCHHHHHHHHHHHHhh---c-cC--ChhhHHHHHHHHhccCCHHHHH
Q 018924          105 AMLKKSEEQIKGA----KVNSAYNVILTLYGKYGKKDDVLRIWELYKKA---V-KV--LNNGYRNVISSLLKLDDLESAE  174 (349)
Q Consensus       105 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~li~~~~~~~~~~~a~  174 (349)
                      ..|.+..+.....    ....+|+.+...|...|++++|+..|+....-   . .+  -..++..+...|.. |++++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            8888876542211    12247888888899999999999988821111   1 11  12467778888888 9999999


Q ss_pred             HHHHHHHhcCCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc----ccc-hhhHHHHHHHHhcCCCHHHHH
Q 018924          175 KIFEEWESQALCY-----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR----EIH-VKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       175 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~~~~~~a~  244 (349)
                      ..|++..+.....     ...+++.+...|.+.|++++|...|++......    .+. ...+..+...+...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9998877532111     135677888889999999999999998876321    111 225666777788889999999


Q ss_pred             HHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924          245 EAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF  286 (349)
Q Consensus       245 ~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  286 (349)
                      ..|++.+ ..+. ............++.++ ..|+.+.+..+
T Consensus       216 ~~~~~al-~~p~-~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SIPG-FSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TSTT-STTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CCCC-CCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999987 4110 00011123344555555 56777666653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.12  E-value=2.7e-09  Score=86.95  Aligned_cols=169  Identities=8%  Similarity=-0.097  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHH
Q 018924           45 TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYN  124 (349)
Q Consensus        45 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  124 (349)
                      +.+...+..+...+...|++++|...|++.. .... -+...+..+...+.+.|++++|...++++....  |+......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAW-QLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHH
Confidence            3345567777778888888888888888876 3333 355677778888888888888888888876643  34423333


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcC
Q 018924          125 VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCY-DTRIPNFLIDVYCRNG  203 (349)
Q Consensus       125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  203 (349)
                      .....+...++.++|...++......+.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            344446677778888888875555556667778888888888888888888888888754221 2556788888888888


Q ss_pred             cHHHHHHHHHHHHH
Q 018924          204 LLEKAENLVNHEKL  217 (349)
Q Consensus       204 ~~~~a~~~~~~~~~  217 (349)
                      +.++|...|++...
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888876553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=1.4e-07  Score=76.78  Aligned_cols=230  Identities=10%  Similarity=-0.006  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH----hhc---CC
Q 018924           65 EGIDKILTMMEADPNVALDWVIYATVGNGYGKVG--LLDKALAMLKKSEEQIKGAKVNSAYNVILTLY----GKY---GK  135 (349)
Q Consensus        65 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~  135 (349)
                      ++|+.+++.+. ..+. -+..+|+.--.++...|  +++++++.++.+....  |....+|+.-...+    ...   ++
T Consensus        50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence            56777777666 3332 34455666666666666  7777777777776643  33324665544444    334   56


Q ss_pred             HHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc------HHH
Q 018924          136 KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE--SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL------LEK  207 (349)
Q Consensus       136 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~  207 (349)
                      +++++.+++......+-+..+|+.-.-.+.+.|.++  ++.+.++.+.+.. +-|...|+--...+.+.++      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            667777666444444555566666655556666666  6667777766654 3455555555555555554      666


Q ss_pred             HHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH-HHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 018924          208 AENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK-AVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENF  286 (349)
Q Consensus       208 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  286 (349)
                      +.+.++.+....+. |...|+.+-..+.+.|+... +.++..+.....   ..-..+...+..+...|.+.|+.++|.++
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            66666666666554 66667766666666666433 334444443210   00122455666666666666777777777


Q ss_pred             HHHHhh-CCCCCchhHHH
Q 018924          287 IELLND-KGFIPTDLQDK  303 (349)
Q Consensus       287 ~~~~~~-~~~~~~~~~~~  303 (349)
                      ++.+.+ .+|.....|+.
T Consensus       281 ~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHhccChHHHHHHHH
Confidence            776665 34444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.11  E-value=9.7e-09  Score=84.50  Aligned_cols=188  Identities=9%  Similarity=-0.000  Sum_probs=110.6

Q ss_pred             HHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC----cchhhHHHH
Q 018924           55 LSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA----KVNSAYNVI  126 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l  126 (349)
                      ...|...|++++|...|.+...   +.+- .....+|+.+..+|.+.|++++|+..|++..+.....    ....+++.+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4456667777777777766531   1111 1123466777777778888888888777765532111    112466777


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHhhccC------ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCC----CCC-cchHHHH
Q 018924          127 LTLYGKYGKKDDVLRIWELYKKAVKV------LNNGYRNVISSLLKLDDLESAEKIFEEWESQAL----CYD-TRIPNFL  195 (349)
Q Consensus       127 ~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l  195 (349)
                      ...|.. |++++|+..|+....-.+.      ...++..+...+...|++++|...|++..+...    .+. ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            777777 8888888888722211111      134567777788888888888888887765311    111 1245556


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCccc-c---hhhHHHHHHHHhcCCCHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGREI-H---VKSWYYLATGYRQNSQIHKAVE  245 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~  245 (349)
                      ..++...|++++|...|++.. ..+.. +   ......++.++ ..|+.+.+.+
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            666777788888888888777 43211 1   11234444444 4566555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=1.6e-07  Score=76.57  Aligned_cols=168  Identities=15%  Similarity=0.053  Sum_probs=119.3

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHhhcc--CCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----cchHH
Q 018924          125 VILTLYGKYGKKDDVLRIWELYKKAVK--VLN----NGYRNVISSLLKLDDLESAEKIFEEWESQALC-YD----TRIPN  193 (349)
Q Consensus       125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~  193 (349)
                      ..+..+...|++++|...++......+  |+.    ..+..+...+...+++++|...+++..+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888899999888883333222  221    12335667777888999999999998874322 22    12588


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHc-----Cccc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924          194 FLIDVYCRNGLLEKAENLVNHEKLK-----GREI-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL  267 (349)
Q Consensus       194 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  267 (349)
                      .+...|...|++++|...|+++.+.     +..+ ...++..+...|.+.|++++|..++++.++..........-...|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8999999999999999999988741     1112 234788899999999999999999999886522111112226788


Q ss_pred             HHHHHHHHhcCC-hhhHHHHHHHHhh
Q 018924          268 AACLDYFKDEGD-IGGAENFIELLND  292 (349)
Q Consensus       268 ~~ll~~~~~~g~-~~~a~~~~~~~~~  292 (349)
                      ..+..++.+.|+ +++|...+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            888889999995 6999998887764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.10  E-value=1.1e-07  Score=77.41  Aligned_cols=223  Identities=9%  Similarity=-0.035  Sum_probs=159.6

Q ss_pred             HhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH----hh
Q 018924           24 YKTGN-FEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS--DHEGIDKILTMMEADPNVALDWVIYATVGNGY----GK   96 (349)
Q Consensus        24 ~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~   96 (349)
                      .+.|. .++|+.+++.++..+.. +...|+.--.++...+  ++++++++++.+. ..+. -+..+|+.-...+    ..
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-~~nP-k~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIA-LDNE-KNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHH-HHCc-ccHHHHHHHHHHHHHHHHh
Confidence            34444 46899999988886533 4557787777787888  8999999998887 4343 3445555443333    44


Q ss_pred             c---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH--HHHHHHHHHHhhccCChhhHHHHHHHHhccCC--
Q 018924           97 V---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD--DVLRIWELYKKAVKVLNNGYRNVISSLLKLDD--  169 (349)
Q Consensus        97 ~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--  169 (349)
                      .   +++++++++++++.+.  .|....+|+--.-.+...|.++  ++++.++......+-+...|+.......+.+.  
T Consensus       120 l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred             ccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            4   7888999999888875  3444478888888888888887  88888884445555666777777777777776  


Q ss_pred             ----HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH-HHHHHHHHHHHcC--cccchhhHHHHHHHHhcCCCHHH
Q 018924          170 ----LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE-KAENLVNHEKLKG--REIHVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       170 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~  242 (349)
                          ++++.+.++.+.... +-|...|+-+-..+.+.|+.. .+..+..++.+.+  -..++..+..+...|.+.|+.++
T Consensus       198 ~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~  276 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE  276 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence                788888888888765 557778887777787777743 3555666665533  12366778888888888899999


Q ss_pred             HHHHHHHHHH
Q 018924          243 AVEAMKKVLA  252 (349)
Q Consensus       243 a~~~~~~~~~  252 (349)
                      |.++++.+.+
T Consensus       277 A~~~~~~l~~  286 (306)
T 3dra_A          277 SRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=6e-08  Score=75.09  Aligned_cols=174  Identities=13%  Similarity=0.010  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC----cHHHHHHH
Q 018924           31 KLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG----LLDKALAM  106 (349)
Q Consensus        31 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~  106 (349)
                      +|++.|++..+.|   +...+..+...|...+++++|..+|++.. +.+   +...+..|...|.. +    ++++|.+.
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            4556666666553   55666666666666777777777777665 333   33445556666665 5    67777777


Q ss_pred             HHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCC---hhhHHHHHHHHhc----cCCHHHHHH
Q 018924          107 LKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVL---NNGYRNVISSLLK----LDDLESAEK  175 (349)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~----~~~~~~a~~  175 (349)
                      |++..+.+   +. .++..|...|..    .+++++|+.+|+..... .++   ...+..+...|..    .+++++|..
T Consensus        76 ~~~A~~~g---~~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  150 (212)
T 3rjv_A           76 AEKAVEAG---SK-SGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASE  150 (212)
T ss_dssp             HHHHHHTT---CH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred             HHHHHHCC---CH-HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            77665432   22 456666666665    56666666666622221 121   4455566666655    556666666


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhc-C-----cHHHHHHHHHHHHHcC
Q 018924          176 IFEEWESQALCYDTRIPNFLIDVYCRN-G-----LLEKAENLVNHEKLKG  219 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  219 (349)
                      .|++..+.  ..+...+..|...|... |     ++++|..+|+...+.|
T Consensus       151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            66666554  12333455555555442 2     5666666666666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.05  E-value=1e-07  Score=86.16  Aligned_cols=250  Identities=9%  Similarity=0.067  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHhhcCCCCCccHH
Q 018924           14 VVYNSMLKLYYKTG-------NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGID-KILTMMEADPNVALDWV   85 (349)
Q Consensus        14 ~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~   85 (349)
                      ..|...+..--..+       ..+.+..+|++..... +-+...|...+..+...|+.++|. ++|++.. . .++.+..
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~-~~P~s~~  379 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-Q-CIPNSAV  379 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-H-HCTTCHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-H-hCCCCHH
Confidence            56777766544433       1244667898888763 447788888888888899999996 9999987 4 3335666


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhc---------CCc-----------chhhHHHHHHHHhhcCCHHHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIK---------GAK-----------VNSAYNVILTLYGKYGKKDDVLRIWEL  145 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~  145 (349)
                      .|...+...-+.|++++|.++|+++.+...         .|+           ...+|...+....+.|+.+.|..+|..
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            777888889999999999999999986421         131           224788888888889999999999993


Q ss_pred             HHhh-ccCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-
Q 018924          146 YKKA-VKVLNNGYRNVISSLLKL-DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-  222 (349)
Q Consensus       146 ~~~~-~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-  222 (349)
                      .... .......|...+..-.+. ++.+.|.++|+...+. .+.+...+...+......|+.+.|..+|++.......+ 
T Consensus       460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~  538 (679)
T 4e6h_A          460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH  538 (679)
T ss_dssp             HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred             HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence            3332 222334444333333344 4589999999998886 45566777788888888999999999999998865421 


Q ss_pred             -chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHH
Q 018924          223 -HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYF  274 (349)
Q Consensus       223 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~  274 (349)
                       ....|...+..-.+.|+.+.+..+.+++.+.       .|+......+++-|
T Consensus       539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-------~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-------FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-------STTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCcHHHHHHHHh
Confidence             3457888888888899999999999999976       56555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.03  E-value=9.2e-08  Score=78.06  Aligned_cols=164  Identities=9%  Similarity=-0.094  Sum_probs=85.0

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhcc-CCh----hhHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVK-VLN----NGYRN  159 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~----~~~~~  159 (349)
                      .+..+...|++++|.+.+++..+.....+.    ...+..+...+...+++++|+..++ ....... ++.    .+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            345555666666666666665542111111    0123335555555556666666666 2221111 111    14556


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHh----c-CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC----ccc-chhhHH
Q 018924          160 VISSLLKLDDLESAEKIFEEWES----Q-ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG----REI-HVKSWY  228 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~  228 (349)
                      +...|...|++++|...++++.+    . +..+ ...++..+...|.+.|++++|...+++..+..    ..+ -..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            66666666666666666666552    1 1111 12355666666777777777777666555321    111 134566


Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHH
Q 018924          229 YLATGYRQNSQ-IHKAVEAMKKVLAA  253 (349)
Q Consensus       229 ~li~~~~~~~~-~~~a~~~~~~~~~~  253 (349)
                      .+..+|...|+ +++|.+.+++++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            66666777773 47777777666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.01  E-value=9.4e-09  Score=83.40  Aligned_cols=195  Identities=8%  Similarity=-0.022  Sum_probs=127.1

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...+..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|...+++.. +... .+...+..+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l   78 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFL   78 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence            3567788888999999999999999999988642 267788889999999999999999999987 5443 567788889


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      ..+|...|++++|...|++..+..+...  ..+...+....+.   ..+...........+.+......+.. + ..|+.
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~  151 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTR-L-IAAER  151 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence            9999999999999999998877544221  1222222222211   11222222223333444443333322 2 25778


Q ss_pred             HHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 018924          171 ESAEKIFEEWESQALCYD-TRIPNFLIDVYCRN-GLLEKAENLVNHEKL  217 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  217 (349)
                      ++|.+.++...+.  .|+ ......+...+.+. +.+++|.++|....+
T Consensus       152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8888877776654  333 33333344444444 567788888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.00  E-value=2.1e-07  Score=75.91  Aligned_cols=171  Identities=14%  Similarity=0.048  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CC--c
Q 018924          121 SAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN------NGYRNVISSLLKLDDLESAEKIFEEWESQALC---YD--T  189 (349)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~  189 (349)
                      ..+...+..+...|++++|.+.++......+...      ..+..+...+...|++++|...+++..+....   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            4556667777888888888888873222222111      22344566677888999999999888753211   11  3


Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcc-c--chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKL---KGRE-I--HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-  262 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-  262 (349)
                      .+++.+...|...|++++|...|++..+   .... +  ...++..+...|...|++++|..++++.++.... .+... 
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~  234 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHH
Confidence            4678888899999999999999988773   2111 1  1257888889999999999999999998865111 11111 


Q ss_pred             CHHHHHHHHHHHHhcCChhhH-HHHHHHHhh
Q 018924          263 SVESLAACLDYFKDEGDIGGA-ENFIELLND  292 (349)
Q Consensus       263 ~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~  292 (349)
                      -..+|..+..+|.+.|+.++| ...++....
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            267788888899999999999 777776554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.99  E-value=1e-08  Score=78.63  Aligned_cols=156  Identities=10%  Similarity=-0.034  Sum_probs=75.0

Q ss_pred             hhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---h--c-cCChhhHHHHHHHHhccC
Q 018924           95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---A--V-KVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~~~~~li~~~~~~~  168 (349)
                      ...|++++|.+.++.+..  ..+....++..+...+...|++++|...++....   .  . +....++..+...+...|
T Consensus         3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            346677777774444432  1212225666677777777777777777762111   0  1 112234555555666666


Q ss_pred             CHHHHHHHHHHHHhc----CCCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc---ccc--hhhHHHHHHHHhcC
Q 018924          169 DLESAEKIFEEWESQ----ALCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR---EIH--VKSWYYLATGYRQN  237 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~  237 (349)
                      ++++|...+++..+.    +..+  ....+..+...+...|++++|...+++......   .+.  ..++..+...+...
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            666666666554432    1000  122344455555555566666555555443110   001  12234445555555


Q ss_pred             CCHHHHHHHHHHHHH
Q 018924          238 SQIHKAVEAMKKVLA  252 (349)
Q Consensus       238 ~~~~~a~~~~~~~~~  252 (349)
                      |++++|.+.+++..+
T Consensus       161 g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          161 KNLLEAQQHWLRARD  175 (203)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            555555555555554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.99  E-value=5.6e-08  Score=75.25  Aligned_cols=166  Identities=6%  Similarity=-0.016  Sum_probs=133.0

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHhhcCCCCCccHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS----DHEGIDKILTMMEADPNVALDWVI   86 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~   86 (349)
                      -+..++..|...|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|..+|++.. +.+   +...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g---~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAG---SKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTT---CHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCC---CHHH
Confidence            367788889999999999999999999999875   66777788888877 6    8999999999987 544   4566


Q ss_pred             HHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHH
Q 018924           87 YATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYR  158 (349)
Q Consensus        87 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  158 (349)
                      +..|...|..    .+++++|++.|++..+.+...+.+.++..|...|..    .+++++|+..|+..... +.+...+.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7778888887    899999999999998754321112688899999988    88999999999943332 44556777


Q ss_pred             HHHHHHhcc-C-----CHHHHHHHHHHHHhcCC
Q 018924          159 NVISSLLKL-D-----DLESAEKIFEEWESQAL  185 (349)
Q Consensus       159 ~li~~~~~~-~-----~~~~a~~~~~~~~~~~~  185 (349)
                      .+...|... |     ++++|...|+...+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            788777643 3     89999999999988773

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.98  E-value=8.9e-08  Score=74.01  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY  130 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (349)
                      +..+...+...|++++|...+++..     .|+..+|..+..+|...|++++|.+.|++..+.  .|+...+|..+..++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            3444555556666666666665543     234555566666666666666666666665553  233334555666666


Q ss_pred             hhcCCHHHHHHHHH
Q 018924          131 GKYGKKDDVLRIWE  144 (349)
Q Consensus       131 ~~~~~~~~a~~~~~  144 (349)
                      ...|++++|+..|+
T Consensus        82 ~~~~~~~~A~~~~~   95 (213)
T 1hh8_A           82 YQTEKYDLAIKDLK   95 (213)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHcccHHHHHHHHH
Confidence            66666666666665

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.96  E-value=1e-07  Score=73.63  Aligned_cols=126  Identities=13%  Similarity=0.032  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...+..+...+...|++++|+..|++.    +.|+...|..+..++...|++++|...+++.. .... .+...|..+..
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~lg~   79 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK-HLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-cchHHHHHHHH
Confidence            344566777888888999988888776    35677888888888888899999988888876 3332 45677888888


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCc--------------chhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAK--------------VNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +|...|++++|.+.|++..+..+...              ...++..+..++...|++++|...|+
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            88888999999988888877533222              11345555555555555555555555

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.96  E-value=3e-08  Score=69.80  Aligned_cols=95  Identities=14%  Similarity=-0.084  Sum_probs=40.6

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR  201 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  201 (349)
                      .+......|.+.|++++|++.|+......+.+...|..+..++.+.|++++|...+++..+.. +.+...|..+..+|..
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence            344444444444444444444442222223333344444444444444444444444444432 2233344444444444


Q ss_pred             cCcHHHHHHHHHHHHH
Q 018924          202 NGLLEKAENLVNHEKL  217 (349)
Q Consensus       202 ~~~~~~a~~~~~~~~~  217 (349)
                      .|++++|...|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            4444444444444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.94  E-value=4e-08  Score=69.13  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|......+.+.|++++|++.|++.++... .+...|..+..++.+.|++++|+..+++.. +.+. .+...|..+..
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~a~~~lg~   89 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCI-RLDS-KFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhhh-hhhHHHHHHHH
Confidence            45566777777777777777777777776542 256677777777777777777777777766 3333 44566777777


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL  127 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  127 (349)
                      ++...|++++|.+.|++..+.  .|+...++..+.
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~  122 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQV--DPSNEEAREGVR  122 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence            777777777777777777763  444434444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=3e-07  Score=74.97  Aligned_cols=170  Identities=11%  Similarity=-0.062  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC---c-c
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDW----VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA---K-V  119 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~  119 (349)
                      ...+...+..+...|++++|.+.+++........++.    ..+..+...+...|++++|...+++..+.....   . .
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            3456667778889999999999988766232222221    234457777888899999999999887532211   1 1


Q ss_pred             hhhHHHHHHHHhhcCCHHHHHHHHHHHH---hhccCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCC-
Q 018924          120 NSAYNVILTLYGKYGKKDDVLRIWELYK---KAVKVL----NNGYRNVISSLLKLDDLESAEKIFEEWESQA----LCY-  187 (349)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-  187 (349)
                      ..+|+.+...|...|++++|+..|+...   ...+.+    ..++..+...|...|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            2478899999999999999999998222   222221    1578889999999999999999998876532    111 


Q ss_pred             CcchHHHHHHHHHhcCcHHHH-HHHHHHHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKA-ENLVNHEKL  217 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  217 (349)
                      -..+|..+..+|.+.|++++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            145678888999999999999 777776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.91  E-value=9.1e-08  Score=70.59  Aligned_cols=94  Identities=9%  Similarity=-0.167  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          123 YNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      +..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence            33333344444444444444442222222233333444444444444444444444443332 22233344444444444


Q ss_pred             CcHHHHHHHHHHHHH
Q 018924          203 GLLEKAENLVNHEKL  217 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~  217 (349)
                      |++++|...|++..+
T Consensus        95 ~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           95 GKFRAALRDYETVVK  109 (166)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            444444444444444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.91  E-value=1.2e-07  Score=70.03  Aligned_cols=130  Identities=15%  Similarity=0.023  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+...|++++|...|++..+.  .|+...++..+...+...|++++|...++......+.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            44566777777888888888888887764  3333367778888888888888888888844444455566777888888


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCcHHHHHHHHHHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNF--LIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      ...|++++|...+++..+.. +.+...+..  +...+...|++++|...+.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88888888888888877753 233334432  33336667778888877776543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.89  E-value=3.1e-08  Score=71.94  Aligned_cols=96  Identities=9%  Similarity=-0.068  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+.+.|++++|+..|++....  .|+....|..+..+|...|++++|+..|+....-.|.+...|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            33444555555555555555555555542  2333345555555555555555555555533333333344455555555


Q ss_pred             hccCCHHHHHHHHHHHHh
Q 018924          165 LKLDDLESAEKIFEEWES  182 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~  182 (349)
                      ...|++++|...|+...+
T Consensus       115 ~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=1e-07  Score=73.01  Aligned_cols=120  Identities=9%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCCC-ccHHHHHHHHHHHhhcCc
Q 018924           24 YKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEA---DPNVA-LDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        24 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~li~~~~~~g~   99 (349)
                      ...|++++|.++++..... ......++..+...+...|++++|...+++...   ..+.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3456666666644444321 122344566666666666666666666665431   11111 223445556666666666


Q ss_pred             HHHHHHHHHHHHHhhc----CC-cchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924          100 LDKALAMLKKSEEQIK----GA-KVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +++|.+.+++..+...    .+ ....++..+...+...|++++|...++
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE  131 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            6666666665544211    11 111345555556666666666666655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.88  E-value=1.1e-07  Score=66.22  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++. .... .+..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDP-NNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHH
Confidence            5667777788888888888888888877653 2356677777777888888888888887776 3222 45666777777


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .+...|++++|...|+++.+.  .|+....+..+...+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence            888888888888888877764  33332455555554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.87  E-value=2.5e-08  Score=80.86  Aligned_cols=195  Identities=12%  Similarity=-0.025  Sum_probs=114.4

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      +...+..+...+.+.|++++|...|++..+.  .|+....|..+..++...|++++|+..++......+.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4566777788888888888888888888774  44444678888888888888888888888444444455667777888


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  242 (349)
                      ++...|++++|...|+...+... .+...+...+....+   ...+... ..........+......+ ..+ ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYL-TRL-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence            88888888888888887766431 111122222222211   1111111 112222232333333333 222 2577777


Q ss_pred             HHHHHHHHHHHhcccccCCCCHHHHHHHH-HHHHhc-CChhhHHHHHHHHhhC
Q 018924          243 AVEAMKKVLAAYQTLVKWKPSVESLAACL-DYFKDE-GDIGGAENFIELLNDK  293 (349)
Q Consensus       243 a~~~~~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~-g~~~~a~~~~~~~~~~  293 (349)
                      |++.++.+.       ...|+......-+ ..+.+. +.+++|.++|..+.+.
T Consensus       154 A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNH-------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGG-------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhh-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            777777766       4456543332222 223333 5567777777776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-07  Score=67.17  Aligned_cols=120  Identities=10%  Similarity=-0.002  Sum_probs=76.3

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      +.+...|..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|...+++.. +... .+...+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~   89 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEP-TFIKGYTR   89 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CchHHHHH
Confidence            34566677777777777777777777777766532 255566667777777777777777777765 3222 34556666


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG  134 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (349)
                      +..++.+.|++++|.+.|++..+..  |.....+..+..++...|
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence            7777777777777777777766542  333245555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.85  E-value=1.3e-07  Score=65.83  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  234 (349)
                      ..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence            344555555555555555555555555432 233444555555555555555555555555543321 344455555555


Q ss_pred             hcCCCHHHHHHHHHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~  252 (349)
                      ...|++++|...++++.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            555555555555555553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.85  E-value=8.4e-08  Score=67.48  Aligned_cols=121  Identities=15%  Similarity=0.061  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.. .... .+...+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~   86 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP-AYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hcCc-cCHHHHHHH
Confidence            356677778888888888888888888877653 2356677777778888888888888888776 3222 346667777


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                      ...+...|++++|...|++..+.  .|+...++..+..++...|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence            77888888888888888887764  333335677777777666654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=2.5e-08  Score=79.42  Aligned_cols=198  Identities=7%  Similarity=-0.099  Sum_probs=142.8

Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHH-------HHHHhhcCCHHHHHHHHHHHHhhccCCh--------------
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVI-------LTLYGKYGKKDDVLRIWELYKKAVKVLN--------------  154 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------  154 (349)
                      ..++...|.+.|.+..+.  .|+....|..+       ...+.+.++..+++..++ ...++.|+.              
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~-~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS-GSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH-HTTTCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH-HHhcCChhhhhhhhccCCccccc
Confidence            579999999999999884  56665788888       566666666666666555 122222211              


Q ss_pred             --------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--h
Q 018924          155 --------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--V  224 (349)
Q Consensus       155 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~  224 (349)
                              .........+...|++++|.++|+.+...+  |+......+...+.+.+++++|...|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                    123446677889999999999999887654  433355667778899999999999998554421 111  2


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHH
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD  302 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  302 (349)
                      ..+..+..++...|++++|++.|++....     ...|.  .........++.+.|+.++|..+|+++....|. ...+.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDS-----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            36777888999999999999999998752     32254  345566677788999999999999999998776 66666


Q ss_pred             HHh
Q 018924          303 KLL  305 (349)
Q Consensus       303 ~l~  305 (349)
                      .|.
T Consensus       246 aL~  248 (282)
T 4f3v_A          246 ALK  248 (282)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=4.1e-08  Score=71.27  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      .+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|++.....+. ++..|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            34444444555555555555555555432 233444555555555555555555555555554332 3444555555555


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 018924          236 QNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~  252 (349)
                      ..|++++|...|+++++
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.84  E-value=1.3e-05  Score=70.26  Aligned_cols=120  Identities=13%  Similarity=0.052  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccccCCC-CHHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ-NSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLA  268 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~  268 (349)
                      +|...+..+.+.+.++.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.       .| +...+.
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-------~~~~~~~~~  358 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-------HPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-------CTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-------CCCCHHHHH
Confidence            4555555566677899999999988 32 22233344322222122 33699999999999875       23 344556


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          269 ACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       269 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      ..++...+.|+.+.|+.+|+.+.    .....|...+ .-...|  +.+..+++++..
T Consensus       359 ~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          359 EFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777788999999999999873    2455677777 555667  567777877753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.83  E-value=2.2e-08  Score=75.04  Aligned_cols=118  Identities=7%  Similarity=-0.023  Sum_probs=45.3

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH-HhccCCH--HHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKLDDL--ESA  173 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~a  173 (349)
                      .|++++|...+++..+.  .|+...+|..+...|...|++++|...|+......+.+...+..+..+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            34444444444444432  122223444444444444444444444442222222233333333333 3344443  444


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 018924          174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL  217 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  217 (349)
                      ...++.+.+.. +.+...+..+...|...|++++|...|+++.+
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            44444444332 12233333344444444444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.83  E-value=1.2e-07  Score=66.57  Aligned_cols=96  Identities=17%  Similarity=0.081  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+...|++++|...|++....  .|+...++..+...+...|++++|...++......+.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34444555555555555555555555443  2222244555555555555555555555522222233334444444455


Q ss_pred             hccCCHHHHHHHHHHHHh
Q 018924          165 LKLDDLESAEKIFEEWES  182 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~  182 (349)
                      ...|++++|...+++..+
T Consensus        91 ~~~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALE  108 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHh
Confidence            555555555555555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.82  E-value=2.8e-07  Score=65.01  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHH
Q 018924           48 RYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVIL  127 (349)
Q Consensus        48 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  127 (349)
                      ...+..+...+...|++++|...+++.. +... .+..++..+..++...|++++|.+.+++..+.  .|+...++..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   91 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAI-KRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHH-TTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3455555666666666666666666655 3222 34455555666666666666666666665553  223224555566


Q ss_pred             HHHhhcCCHHHHHHHHH
Q 018924          128 TLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~  144 (349)
                      .++...|++++|...|+
T Consensus        92 ~~~~~~~~~~~A~~~~~  108 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQ  108 (133)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHH
Confidence            66666666666666665

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.82  E-value=3.2e-06  Score=69.59  Aligned_cols=219  Identities=11%  Similarity=0.036  Sum_probs=145.0

Q ss_pred             hhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc-C-CHH
Q 018924           95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL-D-DLE  171 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~  171 (349)
                      .+.+..++|+++++++...  .|+...+|+.--..+...| ++++++..++......+-+..+|+.-...+.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            3344556788888888774  4455467877777777777 488888888855555555556676666555555 5 778


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHH--------HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC----
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLE--------KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ----  239 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----  239 (349)
                      +++++++.+.+.. +-|...|+--.-.+.+.|.++        ++.+.++++.+.++. |...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            8888888887754 445666665555555555555        888899999887765 77888888888877776    


Q ss_pred             ---HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHhhCC-
Q 018924          240 ---IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDI--------------------GGAENFIELLNDKG-  294 (349)
Q Consensus       240 ---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~-  294 (349)
                         ++++++++++++..       .| |...|+.+-..+.+.|+.                    .....+...+.... 
T Consensus       221 ~~~~~eELe~~~~aI~~-------~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHL-------IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL  293 (349)
T ss_dssp             HHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred             hHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence               68899999988854       56 566666665556555543                    22333333333222 


Q ss_pred             -----CCCchhHHHHh-hhhhcC--cchHHHHHHHHhC
Q 018924          295 -----FIPTDLQDKLL-DNVQNG--KSNLETLRELYGN  324 (349)
Q Consensus       295 -----~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~  324 (349)
                           ++++.....++ .|...|  ++|.++++.+.+.
T Consensus       294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                 34555666677 888777  7899999988643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=2.1e-07  Score=77.45  Aligned_cols=124  Identities=15%  Similarity=-0.038  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-------------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-------------NSAYNVILTLYGKYGKKDDVLRIWELYKKAV  150 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  150 (349)
                      ...+..+...+.+.|++++|...|++..+..+....             ..+|..+..+|.+.|++++|+..++......
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            445566666667777777777777766654322210             1344444444444444444444444222222


Q ss_pred             cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924          151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  208 (349)
                      +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444432 22233344444444444444444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.80  E-value=1.8e-08  Score=77.18  Aligned_cols=148  Identities=11%  Similarity=0.032  Sum_probs=70.7

Q ss_pred             HHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----------------ch
Q 018924          128 TLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----------------RI  191 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~  191 (349)
                      ......|+++.+.+.|++...........+..+...+...|++++|...|++..+.. +.+.                ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHH
Confidence            334444555555555552222222223345556666666667777777666666532 1111                34


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC  270 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  270 (349)
                      +..+..+|...|++++|...+++..+..+. +...+..+..+|...|++++|.+.|++.++.       .| +...+..+
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l  162 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL-------NPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHH
Confidence            555555556666666666666655554322 4445555555666666666666666665532       33 33444444


Q ss_pred             HHHHHhcCChhhHH
Q 018924          271 LDYFKDEGDIGGAE  284 (349)
Q Consensus       271 l~~~~~~g~~~~a~  284 (349)
                      ..++...++.+++.
T Consensus       163 ~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          163 ELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.79  E-value=6.8e-06  Score=67.68  Aligned_cols=183  Identities=9%  Similarity=-0.015  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADAS-DHEGIDKILTMMEADPNVALDWVIYATVGNGY   94 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~   94 (349)
                      ++.+-....+.+..++|+++++.++..+.. +..+|+.--.++...| ++++++.+++.+. ..+. -+..+|+.-..++
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-~~nP-Kny~aW~hR~wlL  133 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFA-VQNL-KSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HTTC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHH
Confidence            333333344455567899999999887543 5567777777777778 5899999999887 5444 5667777666666


Q ss_pred             hhc-C-cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHH--------HHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           95 GKV-G-LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKD--------DVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        95 ~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      .+. + ++++++++++++.+.  .|....+|+--.-.+.+.|.++        ++++.++......+-|...|+.....+
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            665 6 788899999888864  3444367776666666655555        777777744444455666777777777


Q ss_pred             hccCC-------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc
Q 018924          165 LKLDD-------LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL  204 (349)
Q Consensus       165 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  204 (349)
                      .+.+.       ++++.+.+.++.... +-|...|+-+-..+.+.|+
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            66665       567777777766653 4455566655555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.79  E-value=6e-08  Score=72.67  Aligned_cols=123  Identities=11%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             HHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHH-HhhcCCH
Q 018924           58 YADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTL-YGKYGKK  136 (349)
Q Consensus        58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  136 (349)
                      +...|++++|...+++.. .... .+...|..+...|...|++++|...|++..+..  |+....+..+..+ +...|++
T Consensus        20 ~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKI-RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             CC-----CCCCHHHHHHH-HHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhccCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence            345677788888888776 3332 456777788888888888888888888887754  3333577777777 6778887


Q ss_pred             --HHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          137 --DDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       137 --~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                        ++|...++......+.+...+..+...+...|++++|...++.+.+..
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence              888888884444444556677778888888888888888888887753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.77  E-value=1.4e-07  Score=68.32  Aligned_cols=97  Identities=9%  Similarity=-0.071  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      ...+..+...+.+.|++++|...|++....  .|+....|..+..++...|++++|+..|+......+.+...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            344455556666666666666666665553  333334566666666666666666666663333333444555556666


Q ss_pred             HhccCCHHHHHHHHHHHHh
Q 018924          164 LLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~  182 (349)
                      +...|++++|...|+...+
T Consensus        99 ~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=5.7e-07  Score=71.62  Aligned_cols=195  Identities=13%  Similarity=-0.019  Sum_probs=135.5

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHhhcCCCCCcc--------------
Q 018924           25 KTGNFEKLDSLMHEMEENGITYDRYTYCTR-------LSAYADASDHEGIDKILTMMEADPNVALD--------------   83 (349)
Q Consensus        25 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------   83 (349)
                      +.++...|.+.|.+..+.... ....|..+       ...+...++..+++..+..-.   ++.|+              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~   93 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD   93 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence            689999999999999987433 45677777       445555555555554444433   22121              


Q ss_pred             --------HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC--
Q 018924           84 --------WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL--  153 (349)
Q Consensus        84 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--  153 (349)
                              ...+..+...+...|++++|.++|+.+...  .|.. .....+...+.+.+++++|+..|+.  ....|+  
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~-~~~~~~a~l~~~~~r~~dA~~~l~~--a~~~~d~~  168 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEH-LVAWMKAVVYGAAERWTDVIDQVKS--AGKWPDKF  168 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHH-HHHHHHHHHHHHTTCHHHHHHHHTT--GGGCSCHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCch-HHHHHHHHHHHHcCCHHHHHHHHHH--hhccCCcc
Confidence                    233345777888999999999999988764  3444 2666677788899999999999981  111222  


Q ss_pred             --hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHH
Q 018924          154 --NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYY  229 (349)
Q Consensus       154 --~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  229 (349)
                        ...+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....  |+...+..
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a  246 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence              23677888899999999999999998875433243  2345567778889999999999999999865  44333333


Q ss_pred             H
Q 018924          230 L  230 (349)
Q Consensus       230 l  230 (349)
                      |
T Consensus       247 L  247 (282)
T 4f3v_A          247 L  247 (282)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=3.5e-07  Score=76.15  Aligned_cols=153  Identities=12%  Similarity=-0.037  Sum_probs=116.5

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC---------------hhhHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL---------------NNGYRNVI  161 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~li  161 (349)
                      .+++++|...|+...+.  .|.....|..+...+...|++++|+..|+......+.+               ...|..+.
T Consensus       126 L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  203 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA  203 (336)
T ss_dssp             EEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence            34555666666554432  23333688899999999999999999999433333333               36788889


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      .++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|+.+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988864 456778888899999999999999999998886543 5667888888888888888


Q ss_pred             HH-HHHHHHHHHH
Q 018924          242 KA-VEAMKKVLAA  253 (349)
Q Consensus       242 ~a-~~~~~~~~~~  253 (349)
                      +| ...|+.|...
T Consensus       282 ~a~~~~~~~~~~~  294 (336)
T 1p5q_A          282 AREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            88 4567777654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.75  E-value=1.6e-05  Score=69.67  Aligned_cols=101  Identities=11%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhcCCCCC-ccHHH
Q 018924            9 LARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASD-HEGIDKILTMMEADPNVA-LDWVI   86 (349)
Q Consensus         9 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~   86 (349)
                      +.--..+|...+..+-. |+++.+..+|++....  .|+...|...+.-..+.++ .+....+|+......|.. .+...
T Consensus        11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i   87 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL   87 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence            34445666666666654 7788888888887764  4677777777776666553 344556666655233322 35666


Q ss_pred             HHHHHHHHh----hcCcHHHHHHHHHHHHH
Q 018924           87 YATVGNGYG----KVGLLDKALAMLKKSEE  112 (349)
Q Consensus        87 ~~~li~~~~----~~g~~~~a~~~~~~~~~  112 (349)
                      |...+..+.    ..|+++.+.++|++...
T Consensus        88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence            666666543    24567777777777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.75  E-value=1.4e-07  Score=68.32  Aligned_cols=93  Identities=13%  Similarity=0.017  Sum_probs=43.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      +..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.....+. +...+..+..+|..
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence            3334444444455555555544444432 223344444444445555555555555544443321 33344444445555


Q ss_pred             CCCHHHHHHHHHHHH
Q 018924          237 NSQIHKAVEAMKKVL  251 (349)
Q Consensus       237 ~~~~~~a~~~~~~~~  251 (349)
                      .|++++|.+.|++.+
T Consensus       102 ~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          102 XGELAEAESGLFLAQ  116 (148)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.73  E-value=5.3e-07  Score=63.22  Aligned_cols=100  Identities=14%  Similarity=0.009  Sum_probs=71.8

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG   91 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li   91 (349)
                      +...|..+...+.+.|++++|+..|++..+... .+...|..+..++.+.|++++|+..+++.. +.+. .+...|..+.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg   79 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAI-EKDP-NFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHH
Confidence            345677777778888888888888888777542 256677777777888888888888887776 3332 3466677777


Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQI  114 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~  114 (349)
                      .++...|++++|...|++..+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhC
Confidence            77888888888888887776643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.73  E-value=3.4e-05  Score=63.24  Aligned_cols=233  Identities=9%  Similarity=0.036  Sum_probs=147.4

Q ss_pred             hcCChH-HHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc----------HHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 018924           60 DASDHE-GIDKILTMMEADPNVALDWVIYATVGNGYGKVGL----------LDKALAMLKKSEEQIKGAKVNSAYNVILT  128 (349)
Q Consensus        60 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  128 (349)
                      +.|.++ +|+.+++.+. ..++ -+..+|+.--..+...+.          +++++.+++.+...  .|....+|+.-..
T Consensus        41 ~~~e~s~eaL~~t~~~L-~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQIL-GANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHH-TTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHH-HHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            445544 5777777776 4333 334445433222222222          56777777777764  3444367777777


Q ss_pred             HHhhcC--CHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---
Q 018924          129 LYGKYG--KKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD-LESAEKIFEEWESQALCYDTRIPNFLIDVYCRN---  202 (349)
Q Consensus       129 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  202 (349)
                      .+...+  ++++++.+++......+-+...|+.-.-.....|. ++++.+.+..+.+.. +.|...|+-....+.+.   
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence            776766  47788888874445555666777776666667776 578888888887765 45666666655555544   


Q ss_pred             -----------CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcccccC
Q 018924          203 -----------GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-----------SQIHKAVEAMKKVLAAYQTLVKW  260 (349)
Q Consensus       203 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~  260 (349)
                                 +.++++.+.+.......+. |...|+.+-..+.+.           +.++++++.++++.+.       
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------  267 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------  267 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------
Confidence                       4578888888888876654 666776555555444           4578899999999865       


Q ss_pred             CCCH-HHHHH---HHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          261 KPSV-ESLAA---CLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       261 ~p~~-~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      .||. ..+..   +..+.-..|..+++...+.++.+.+|....-|..+.
T Consensus       268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~  316 (331)
T 3dss_A          268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  316 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence            5653 22222   222223467777888899998888776665665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.72  E-value=4.9e-07  Score=63.57  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc--c----hhhHHH
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI--H----VKSWYY  229 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~  229 (349)
                      .+..+...+.+.|++++|...|++..+.. +.+...|+.+..+|...|++++|...+++..+..+..  +    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45556666677777777777777766643 3345566677777777777777777777666532110  0    135666


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHH
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAA  269 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  269 (349)
                      +..++...|++++|++.|++.+..       .||..+...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~-------~~~~~~~~~  121 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE-------FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-------SCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-------CcCHHHHHH
Confidence            777778888888888888888754       566554433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.71  E-value=4.4e-07  Score=63.60  Aligned_cols=96  Identities=17%  Similarity=0.042  Sum_probs=57.9

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      .+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+..+. +...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            34455555666666666666666665543 334555666666666666666666666666654432 3555666666666


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 018924          236 QNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~  253 (349)
                      ..|++++|.+.|++.++.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            666666666666666643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.69  E-value=5.5e-07  Score=61.30  Aligned_cols=99  Identities=14%  Similarity=0.034  Sum_probs=61.9

Q ss_pred             cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC---CHH
Q 018924          189 TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP---SVE  265 (349)
Q Consensus       189 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p---~~~  265 (349)
                      ...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++.+.       .|   +..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~   77 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV-------IEDEYNKD   77 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------SCCTTCHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CcccchHH
Confidence            344555666666666666666666666654432 4455666666666677777777777766642       23   355


Q ss_pred             HHHHHHHHHHhc-CChhhHHHHHHHHhhCCC
Q 018924          266 SLAACLDYFKDE-GDIGGAENFIELLNDKGF  295 (349)
Q Consensus       266 ~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~  295 (349)
                      .+..+..++... |++++|.+.++.+....+
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            666666666677 777777777776666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.69  E-value=4.2e-07  Score=65.33  Aligned_cols=97  Identities=13%  Similarity=-0.014  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+.+.|++++|...|++....  .|+....|..+..++...|++++|+..|+......+.+...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            34445555666666666666666666553  3333355666666666666666666666633333344445556666666


Q ss_pred             hccCCHHHHHHHHHHHHhc
Q 018924          165 LKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~  183 (349)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666665553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.69  E-value=4.5e-08  Score=74.87  Aligned_cols=95  Identities=11%  Similarity=-0.050  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGY  234 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  234 (349)
                      ..+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            456666667777777777777777776653 344556666777777777777777777777665432 444555555555


Q ss_pred             hcCCCHHHHH-HHHHHHH
Q 018924          235 RQNSQIHKAV-EAMKKVL  251 (349)
Q Consensus       235 ~~~~~~~~a~-~~~~~~~  251 (349)
                      ...++.+++. ..+..+.
T Consensus       167 ~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            5555555444 3344443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.67  E-value=7.7e-07  Score=65.65  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=82.4

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...|..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..+++.. +.+. .+...|..+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l   85 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP-KYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC-CCHHHHHHH
Confidence            35677888888899999999999999998876432 66788888888899999999999998887 4333 457778888


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhc
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIK  115 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~  115 (349)
                      ..+|...|++++|...|++..+..+
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC
Confidence            8889999999999999988887543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=1.7e-06  Score=59.38  Aligned_cols=96  Identities=20%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+...|++++|...|++....  .|+....+..+...+...|++++|...++......+.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34445555555666666666666655543  2222245555555556666666666655532222333344455555555


Q ss_pred             hccCCHHHHHHHHHHHHh
Q 018924          165 LKLDDLESAEKIFEEWES  182 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~  182 (349)
                      ...|++++|...++...+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            555555555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.2e-05  Score=69.19  Aligned_cols=98  Identities=5%  Similarity=-0.064  Sum_probs=52.8

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC--c-cc-c--h
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCY-----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG--R-EI-H--V  224 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~-~--~  224 (349)
                      ++..+...+...|++++|..+++++...-...     ...++..++..|...|++++|..++++.....  . .| .  .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            44555556666666666666665554311010     12345566666666677777776666554311  1 11 1  2


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ..+..+...+...|++++|...|.+..+.
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34455555666677777777776666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=1.1e-06  Score=60.44  Aligned_cols=99  Identities=11%  Similarity=-0.062  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAAC  270 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  270 (349)
                      +..+...+...|++++|...|+......+. +...+..+...+...|++++|...++++.+.       .| +...+..+
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~   78 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------KPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------CcccHHHHHHH
Confidence            333444444455555555555544443221 3344444444455555555555555555432       22 33444444


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCCc
Q 018924          271 LDYFKDEGDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      ..++...|++++|...++...+..+.+.
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            4455555555555555555544444333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.65  E-value=9.1e-07  Score=63.52  Aligned_cols=98  Identities=9%  Similarity=-0.030  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...+..+...+.+.|++++|...|+.....+. .+...|..+..++...|++++|...|++.. ..+. .+...+..+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~   94 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGA-LMDI-NEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCC-CCcHHHHHHHH
Confidence            34455555566666666666666666665432 245556666666666666666666666655 3222 33444555666


Q ss_pred             HHhhcCcHHHHHHHHHHHHHh
Q 018924           93 GYGKVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~  113 (349)
                      +|...|++++|.+.|++..+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.63  E-value=4.6e-07  Score=61.70  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=67.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc--cHHHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL--DWVIYAT   89 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~   89 (349)
                      +...|..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|...+++.. +... .  +...+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIE-DEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSC-CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCc-ccchHHHHHH
Confidence            445566677777777777777777777766532 245566677777777777777777777766 3222 2  4566667


Q ss_pred             HHHHHhhc-CcHHHHHHHHHHHHHh
Q 018924           90 VGNGYGKV-GLLDKALAMLKKSEEQ  113 (349)
Q Consensus        90 li~~~~~~-g~~~~a~~~~~~~~~~  113 (349)
                      +..++.+. |++++|.+.+++....
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            77777777 7777777777777654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.62  E-value=1.2e-06  Score=64.49  Aligned_cols=96  Identities=17%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      .+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+..+. +...|..+..+|.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            34445555555555555555555555542 224445555555555666666666666655554322 3445555555666


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 018924          236 QNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~  253 (349)
                      ..|++++|.+.|++.++.
T Consensus        91 ~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHh
Confidence            666666666666665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.62  E-value=1.4e-06  Score=61.90  Aligned_cols=101  Identities=9%  Similarity=-0.028  Sum_probs=73.6

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATV   90 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   90 (349)
                      .+...|..+...+...|++++|+..|........ .+...|..+..++...|++++|...+++.. +.+. .+...+..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l   83 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFFL   83 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-hhHHHHHHH
Confidence            3567777778888888888888888888777642 256677777777888888888888887776 3332 356677777


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhh
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQI  114 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~  114 (349)
                      ..++...|++++|...|++..+..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHC
Confidence            778888888888888887776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.62  E-value=9e-07  Score=62.07  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=72.7

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc--cc----hhhHHH
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE--IH----VKSWYY  229 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~  229 (349)
                      .+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++.......  ++    ...+..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            45566666667777777777777766653 335556667777777777777777777777654321  11    556777


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924          230 LATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY  273 (349)
Q Consensus       230 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~  273 (349)
                      +...+...|++++|.+.|+++.+.       .|+......+...
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~  121 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE-------HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-------CCCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh-------CCCHHHHHHHHHH
Confidence            777888888888888888888754       4555554444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.62  E-value=1.4e-06  Score=61.15  Aligned_cols=95  Identities=19%  Similarity=0.109  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---hccCC----hhhHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---AVKVL----NNGYR  158 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~  158 (349)
                      ++..+...+.+.|++++|++.|++..+.  .|+...+|..+..+|...|++++|+..++....   ...++    ..+|.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            3445556666666666666666665553  333335566666666666666666666651111   11111    01334


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHh
Q 018924          159 NVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      .+..++...|++++|.+.|++..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444444555555555555555444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.61  E-value=5.5e-06  Score=71.40  Aligned_cols=200  Identities=10%  Similarity=-0.039  Sum_probs=131.4

Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcc---------------hhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCCh
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKV---------------NSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLN  154 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~  154 (349)
                      ..+.+.|++++|++.|.++.+.......               ..++..+...|...|++++|.+.+..  ...+..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            4456667777777777766653221111               02467788888889999998888872  111111221


Q ss_pred             ----hhHHHHHHHHhccCCHHHHHHHHHHHHh----cCCCCC-cchHHHHHHHHHhcCcHHHHHHHHHHHHHc--Cc--c
Q 018924          155 ----NGYRNVISSLLKLDDLESAEKIFEEWES----QALCYD-TRIPNFLIDVYCRNGLLEKAENLVNHEKLK--GR--E  221 (349)
Q Consensus       155 ----~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~  221 (349)
                          .+.+.+...+...|+++.|..++.....    .+..+. ..++..+...|...|++++|..+++.+...  +.  .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                1233344445567889999998887664    222222 346778999999999999999999987753  11  1


Q ss_pred             c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          222 I-HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS--VESLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       222 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      + ....+..++..|...|++++|..++++........ ...|.  ...+..+...+...|++++|...|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI-YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1 24578888999999999999999999987641110 11111  34566666777889999999888776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.61  E-value=7.3e-07  Score=65.16  Aligned_cols=102  Identities=22%  Similarity=0.159  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCc-----ccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGR-----EIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVE  265 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  265 (349)
                      ++..+...+...|++++|...+++..+...     ......+..+...+...|++++|.+.+++..+.............
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            344455555555555555555555443110     001334555666666677777777777666643111100011234


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhh
Q 018924          266 SLAACLDYFKDEGDIGGAENFIELLND  292 (349)
Q Consensus       266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  292 (349)
                      .+..+...+...|++++|...+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            455666666777777777777766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.58  E-value=1e-06  Score=61.77  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhcc---CC----hhhH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVK---VL----NNGY  157 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~  157 (349)
                      ..+..+...+...|++++|...|++..+..  |+...++..+...+...|++++|...++......+   ++    ..++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            344555566666666666666666665532  22224556666666666666666666662111111   11    3445


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          158 RNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       158 ~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      ..+..++...|++++|.+.++...+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5555555556666666666655555

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.57  E-value=2e-06  Score=61.03  Aligned_cols=97  Identities=12%  Similarity=-0.062  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS  163 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~  163 (349)
                      ...+..+...+...|++++|...|++....  .|+...+|..+..++...|++++|...++......+.+...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            344444555555555555555555554442  222224455555555555555555555552222223333444444455


Q ss_pred             HhccCCHHHHHHHHHHHHh
Q 018924          164 LLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~  182 (349)
                      +...|++++|...|+...+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.57  E-value=0.00014  Score=59.57  Aligned_cols=232  Identities=8%  Similarity=-0.027  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHH---HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHhhcCC
Q 018924           13 TVVYNSMLKLY---YKTGNFE-KLDSLMHEMEENGITYDRYTYCTRLSAYADASD----------HEGIDKILTMMEADP   78 (349)
Q Consensus        13 ~~~~~~li~~~---~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~   78 (349)
                      +..|..+...+   .+.|.++ +|+++++.++..+.. +..+|+.--.++...+.          +++++.+++.+. ..
T Consensus        26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L-~~  103 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RV  103 (331)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH-Hh
Confidence            44565555543   4566666 799999999987533 44466655444444333          678889999887 43


Q ss_pred             CCCccHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC-HHHHHHHHHHHHhhccCChh
Q 018924           79 NVALDWVIYATVGNGYGKVG--LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK-KDDVLRIWELYKKAVKVLNN  155 (349)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~  155 (349)
                      +. -+..+|+.-..++.+.|  .+++++.+++++.+.  .|....+|+--...+...|. ++++++.++......+-|..
T Consensus       104 ~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          104 NP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             CT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            44 57778877777777777  489999999999985  44444789888888888888 58999999844455566777


Q ss_pred             hHHHHHHHHhcc--------------CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-----------CcHHHHHH
Q 018924          156 GYRNVISSLLKL--------------DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN-----------GLLEKAEN  210 (349)
Q Consensus       156 ~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~  210 (349)
                      .|+.....+.+.              +.++++.+.+....... +-|...|+-+-..+.+.           +.++++.+
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence            777766655544              45788999999888764 55677776554444444           45789999


Q ss_pred             HHHHHHHcCcccchhhHHHHHH-----HHhcCCCHHHHHHHHHHHHHH
Q 018924          211 LVNHEKLKGREIHVKSWYYLAT-----GYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .++++.+..  ||. .|..+..     .....+..+++..++.++.+.
T Consensus       260 ~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          260 SCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            999999855  554 3433222     223467788889999998854

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=7.2e-06  Score=58.84  Aligned_cols=90  Identities=16%  Similarity=-0.017  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCcc----HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHH
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALD----WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNV  125 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  125 (349)
                      .+..+...+...|++++|...|++.. +..  |+    ...+..+..+|...|++++|...+++..+.  .|+...+|..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~  104 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQAL-GLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHH-TSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH-HHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence            33334444444444444444444443 211  22    233334444444444444444444444432  1222234444


Q ss_pred             HHHHHhhcCCHHHHHHHHH
Q 018924          126 ILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       126 l~~~~~~~~~~~~a~~~~~  144 (349)
                      +..++...|++++|...|+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~  123 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQ  123 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            4444444444444444444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=3.1e-06  Score=60.79  Aligned_cols=100  Identities=10%  Similarity=-0.131  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH----VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVE  265 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~  265 (349)
                      .+..+...+...|++++|...|++..+..  |+    ...|..+...|...|++++|.+.+++..+.       .| +..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~  100 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DGGDVK  100 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TSCCHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------CccCHH
Confidence            34444444555555555555555554432  22    344444555555555555555555555532       22 344


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          266 SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       266 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      .+..+..++...|++++|...|++.....+.+..
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            4445555555555555555555555554443333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.54  E-value=1.1e-06  Score=61.19  Aligned_cols=87  Identities=20%  Similarity=0.115  Sum_probs=33.0

Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  242 (349)
                      .+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..+..+. +...+..+..++...|++++
T Consensus        26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            3333444444444444433322 222333333333444444444444444443333221 22333333334444444444


Q ss_pred             HHHHHHHHH
Q 018924          243 AVEAMKKVL  251 (349)
Q Consensus       243 a~~~~~~~~  251 (349)
                      |+..+++++
T Consensus       104 A~~~~~~al  112 (121)
T 1hxi_A          104 ALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.51  E-value=1.3e-06  Score=60.80  Aligned_cols=97  Identities=15%  Similarity=0.002  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAA  269 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~  269 (349)
                      .+..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|+++++.       .| +...+..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~~~~~~~   90 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKDIAVHAA   90 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHH
Confidence            4556777888999999999999999886643 6778888889999999999999999999854       56 5677888


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          270 CLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       270 ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      +..++...|++++|...++.+.+..|
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            88889999999999999998887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.47  E-value=4.9e-06  Score=60.62  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc----hhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV----NSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      ++..+...+...|++++|...+++..+.......    ..++..+...+...|++++|...++
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   73 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK   73 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4455555566666666666666555443211110    0245555555555666666665555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.46  E-value=3.2e-07  Score=80.13  Aligned_cols=123  Identities=15%  Similarity=0.027  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhcc
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKL  167 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  167 (349)
                      ..+...+.+.|++++|.+.|++..+.  .|+...+|..+..+|.+.|++++|+..++......+.+...+..+..+|...
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            33445567788888888888888774  4544468888888888888888888888844444455567788888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCcHHHHHHHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDV--YCRNGLLEKAENLVN  213 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  213 (349)
                      |++++|.+.+++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888887753 2334455555555  677788888888777

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.46  E-value=1.2e-05  Score=56.30  Aligned_cols=94  Identities=14%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccc--hhhHHHHHHH
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDT---RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIH--VKSWYYLATG  233 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~  233 (349)
                      .+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|...|++..+..+...  ...+..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            34444555566666666666555532 1122   2444555556666666666666666555432210  3345555556


Q ss_pred             HhcCCCHHHHHHHHHHHHHH
Q 018924          234 YRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       234 ~~~~~~~~~a~~~~~~~~~~  253 (349)
                      +...|++++|...|+.+...
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.45  E-value=6.7e-06  Score=71.48  Aligned_cols=124  Identities=14%  Similarity=-0.009  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcc-------------hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKV-------------NSAYNVILTLYGKYGKKDDVLRIWELYKKAV  150 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  150 (349)
                      ...|..+...+.+.|++++|...|++..+..+....             ..+|..+..+|.+.|++++|+..++......
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            345566777777777777777777777664332210             1345555555555555555555555333333


Q ss_pred             cCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924          151 KVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  208 (349)
                      +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555555555555555554432 22333444444444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=9.6e-06  Score=56.75  Aligned_cols=101  Identities=14%  Similarity=0.065  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC----H
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV---KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS----V  264 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~  264 (349)
                      +..+...+...|++++|...|+.+.+..+. +.   ..+..+..++...|++++|...|+++...       .|+    .
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~   76 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------YPTHDKAA   76 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------CCCCcccH
Confidence            445677888999999999999999986533 23   47778889999999999999999999965       443    5


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchh
Q 018924          265 ESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDL  300 (349)
Q Consensus       265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  300 (349)
                      ..+..+..++...|++++|...|+.+....|.+...
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            677888889999999999999999998876655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.40  E-value=1.6e-05  Score=57.29  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHc-------CcccchhhH----HHHHHHHhcCCCHHHHHHHHHHHHHHhccccc
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLK-------GREIHVKSW----YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK  259 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  259 (349)
                      .|+.+..++.+.|++++|...+++.++.       ++. +...|    .....++...|++++|+..|++.++..+...+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            6777777888888888888888877774       432 45567    78888899999999999999999887666667


Q ss_pred             CCCCHHHHHHHH
Q 018924          260 WKPSVESLAACL  271 (349)
Q Consensus       260 ~~p~~~~~~~ll  271 (349)
                      +.+........+
T Consensus       138 ~~~~~~~~~~~~  149 (159)
T 2hr2_A          138 ETPGKERMMEVA  149 (159)
T ss_dssp             CCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655544444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.39  E-value=4.8e-06  Score=72.40  Aligned_cols=88  Identities=8%  Similarity=-0.064  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      .+|..+..+|.+.|++++|+..+++..+.  .|+...+|..+..+|...|++++|+..|+......+.+...+..+..++
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45555666666666666666666665553  2333345666666666666666666666633333333444555555555


Q ss_pred             hccCCHHHHH
Q 018924          165 LKLDDLESAE  174 (349)
Q Consensus       165 ~~~~~~~~a~  174 (349)
                      .+.++.+++.
T Consensus       396 ~~~~~~~~a~  405 (457)
T 1kt0_A          396 KKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.37  E-value=1.3e-06  Score=60.39  Aligned_cols=86  Identities=9%  Similarity=-0.005  Sum_probs=39.9

Q ss_pred             cCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHH
Q 018924           26 TGNFEKLDSLMHEMEENGI--TYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKA  103 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  103 (349)
                      .|++++|+..|++..+.+.  +-+...+..+..++...|++++|...+++.. +... -+..++..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFP-NHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence            3455555555555554321  1122344555555555555555555555544 2222 2344444555555555555555


Q ss_pred             HHHHHHHHHh
Q 018924          104 LAMLKKSEEQ  113 (349)
Q Consensus       104 ~~~~~~~~~~  113 (349)
                      ...|++....
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.36  E-value=6.1e-06  Score=60.56  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      ..|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++.+.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            45555666666666666666666666664432 455566666666666666666666666664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.36  E-value=2e-06  Score=75.12  Aligned_cols=126  Identities=19%  Similarity=0.080  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHH
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLY  130 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (349)
                      +..+...+.+.|++++|.+.+++.. +... .+..+|..+..+|.+.|++++|++.+++..+.  .|+...+|..+..+|
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAI-ELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN   84 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3344556778899999999999988 4333 45788999999999999999999999999884  555557899999999


Q ss_pred             hhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH--HhccCCHHHHHHHHHHH
Q 018924          131 GKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS--LLKLDDLESAEKIFEEW  180 (349)
Q Consensus       131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~  180 (349)
                      ...|++++|++.|+......+.+...+..+..+  +.+.|++++|.+.+++.
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999994444444445566666555  77889999999888753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.35  E-value=1.1e-06  Score=60.66  Aligned_cols=85  Identities=16%  Similarity=0.026  Sum_probs=41.6

Q ss_pred             cCCHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHH
Q 018924          167 LDDLESAEKIFEEWESQA--LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAV  244 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  244 (349)
                      .|++++|...|++..+.+  -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            345555555555555432  1222334455555555555555555555555554332 3444555555555555555555


Q ss_pred             HHHHHHHH
Q 018924          245 EAMKKVLA  252 (349)
Q Consensus       245 ~~~~~~~~  252 (349)
                      +.+++.+.
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.35  E-value=9.1e-06  Score=68.46  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhcC
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENG--------------ITY-DRYTYCTRLSAYADASDHEGIDKILTMMEAD   77 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~   77 (349)
                      ...|..+...+.+.|++++|+..|++.++.-              ..| +..+|..+..++.+.|++++|+..+++.. +
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~  301 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-E  301 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-H
Confidence            3457778888888999999999888887620              111 23455556666666666666666666665 3


Q ss_pred             CCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHH
Q 018924           78 PNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDV  139 (349)
Q Consensus        78 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  139 (349)
                      ... .+...|..+..+|...|++++|++.|++..+.  .|+...++..+..++...++.+++
T Consensus       302 ~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          302 IDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             TCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            322 34555556666666666666666666666553  333324555555555555544444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.32  E-value=1.6e-05  Score=58.26  Aligned_cols=64  Identities=17%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      ..|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++.....
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            456666666667777777777777666653 3345566666777777777777777777766643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=1.4e-05  Score=67.31  Aligned_cols=137  Identities=13%  Similarity=-0.036  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+.+.|++++|++.|++..+...  .. .          .....+.+       ....+.+...|..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~-~----------~~~~~~~~-------~~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS-R----------AAAEDADG-------AKLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH-H----------HHSCHHHH-------GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC-c----------cccChHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3456677778888888888888887765210  00 0          00000000       001111223444555555


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      .+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...++.+++
T Consensus       284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555432 223444455555555555555555555555543321 333444444444444444444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.25  E-value=5.4e-06  Score=68.97  Aligned_cols=148  Identities=14%  Similarity=0.045  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      ..+..+...+.+.|++++|...|++....  .|+. ..       +...++.+++...+.         ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~-~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDD-FM-------FQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHH-HH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccc-hh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            44556777777888888888888877653  3333 11       112222233222221         12455666666


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHH-HhcCCCHHHH
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATG-YRQNSQIHKA  243 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a  243 (349)
                      .+.|++++|...++..++.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666543 334555666666666677777777666666553321 23333333333 2234455566


Q ss_pred             HHHHHHHHHH
Q 018924          244 VEAMKKVLAA  253 (349)
Q Consensus       244 ~~~~~~~~~~  253 (349)
                      ...|+.|...
T Consensus       319 ~~~~~~~l~~  328 (338)
T 2if4_A          319 KEMYKGIFKG  328 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHhhCC
Confidence            6666666544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.19  E-value=7.4e-06  Score=68.17  Aligned_cols=143  Identities=14%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      .+..+...+.+.|++++|...|++..+.  .|+..       .+...++.+++...+          ....|..+..+|.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~~~  241 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHHHH
Confidence            4666666777777777777777776653  22221       112233333332221          1237788899999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh-cC-
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ-NG-  311 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~g-  311 (349)
                      +.|++++|+..++++++.       .| +...+..+..+|...|++++|...|+.+.+..+.+...+..+. ...+ .+ 
T Consensus       242 ~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTE-------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999964       45 6788899999999999999999999999988776766776666 4333 33 


Q ss_pred             -cchHHHHHHHHhC
Q 018924          312 -KSNLETLRELYGN  324 (349)
Q Consensus       312 -~~a~~~~~~m~~~  324 (349)
                       +.+...|+.|...
T Consensus       315 ~~~a~~~~~~~l~~  328 (338)
T 2if4_A          315 YQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHhhCC
Confidence             7788888888653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.16  E-value=0.00017  Score=64.32  Aligned_cols=173  Identities=9%  Similarity=0.021  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCC----------HHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           99 LLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGK----------KDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      ..++|++.++++...  .|+...+|+.-..++...|+          ++++++.++......+-+..+|+.-.-.+.+.+
T Consensus        44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            346778888888874  45554678777777777776          888888888555555556677877777777888


Q ss_pred             --CHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC--------
Q 018924          169 --DLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG-LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN--------  237 (349)
Q Consensus       169 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------  237 (349)
                        +++++.+.++++.+.. +-+...|+--..++.+.| .++++.+.++++.+.++. |...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              6799999999988875 456777877777777788 888999998888887665 677777766665542        


Q ss_pred             ------CCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhh
Q 018924          238 ------SQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGG  282 (349)
Q Consensus       238 ------~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~  282 (349)
                            +.++++++++++++..       .| |...|..+-..+.+.++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~-------~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFT-------DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHH-------CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhh-------CCCCccHHHHHHHHHhcCCCccc
Confidence                  5678899999888854       55 56667666666666665443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.16  E-value=2.9e-05  Score=67.58  Aligned_cols=88  Identities=7%  Similarity=-0.039  Sum_probs=40.3

Q ss_pred             HhhcCcHHHHHHHHHHHHHhh------cCCcchhhHHHHHHHHhhcCCHHHHHHHHHHH----HhhccCC----hhhHHH
Q 018924           94 YGKVGLLDKALAMLKKSEEQI------KGAKVNSAYNVILTLYGKYGKKDDVLRIWELY----KKAVKVL----NNGYRN  159 (349)
Q Consensus        94 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~----~~~~~~  159 (349)
                      +...|++++|+.++++..+..      -.|+...+++.|...|...|++++|+.+++..    ..-..|+    ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            334556666665555554321      01222234555555555555555555555511    1111111    123445


Q ss_pred             HHHHHhccCCHHHHHHHHHHHH
Q 018924          160 VISSLLKLDDLESAEKIFEEWE  181 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~  181 (349)
                      +...|...|++++|..++++..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.15  E-value=0.00022  Score=63.61  Aligned_cols=169  Identities=7%  Similarity=-0.118  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 018924          134 GKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD----------LESAEKIFEEWESQALCYDTRIPNFLIDVYCRNG  203 (349)
Q Consensus       134 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  203 (349)
                      ...++|++.++......+-+...|+.--.++...|+          ++++.+.++.+.+.. +-+..+|+.-..++.+.+
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            344677888885444445555667776666766666          899999999999875 556778887777888888


Q ss_pred             --cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhc--
Q 018924          204 --LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS-QIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDE--  277 (349)
Q Consensus       204 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~--  277 (349)
                        +++++...++++.+.+++ |...|+.-...+.+.| .++++++.++++++       ..| |...|......+.+.  
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-------~~p~n~saW~~r~~ll~~l~~  193 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-------RNFSNYSSWHYRSCLLPQLHP  193 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-------TTCCCHHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH-------HCCCCccHHHHHHHHHHhhcc
Confidence              779999999999998765 7888988888888888 89999999999984       456 667777766666553  


Q ss_pred             ------------CChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC
Q 018924          278 ------------GDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG  311 (349)
Q Consensus       278 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g  311 (349)
                                  +.++++.+.++.+....|.+...|.... .+.+.+
T Consensus       194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence                        5578899999999988888889998888 776666

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.14  E-value=3e-05  Score=67.51  Aligned_cols=131  Identities=9%  Similarity=-0.059  Sum_probs=97.4

Q ss_pred             HHhccCCHHHHHHHHHHHHhc---CCCC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHc-----Cc-ccc-hhhHH
Q 018924          163 SLLKLDDLESAEKIFEEWESQ---ALCY----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLK-----GR-EIH-VKSWY  228 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~  228 (349)
                      .+...|++++|..++++.++.   -+.+    ...+++.|..+|...|++++|..++++..+-     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456889999999999887752   1122    2356889999999999999999999987642     21 122 34688


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcccccC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKW-KPS-VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      .|...|...|++++|+.+++++++-.....|- .|+ ..+...+-.++...+.+++|+.+++.+++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988653222232 232 345566667788899999999999988763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.12  E-value=4.8e-06  Score=56.51  Aligned_cols=88  Identities=8%  Similarity=-0.018  Sum_probs=49.0

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------  263 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------  263 (349)
                      ..+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|++.+++++       .+.|+      
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~   76 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGL-------RYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TSCSSTTSHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HhCCCccHHHH
Confidence            34455555666666666666666666654332 45556666666666666666666666666       33443      


Q ss_pred             -HHHHHHHHHHHHhcCChhhHHH
Q 018924          264 -VESLAACLDYFKDEGDIGGAEN  285 (349)
Q Consensus       264 -~~~~~~ll~~~~~~g~~~~a~~  285 (349)
                       ...+..+..++...|+.+.|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHh
Confidence             3334444444445555444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.12  E-value=8.9e-05  Score=53.39  Aligned_cols=58  Identities=12%  Similarity=-0.035  Sum_probs=31.2

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-----c-----hhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-----V-----NSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +......+.+.|++++|+..|++..+..+..+     .     ..+|+.+..++.+.|++++|+..++
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~   81 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34455566666777777777766665433210     0     0145555555555555555555555

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.04  E-value=4.2e-05  Score=52.31  Aligned_cols=80  Identities=14%  Similarity=0.036  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 018924           31 KLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKS  110 (349)
Q Consensus        31 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  110 (349)
                      +|+..|++..+... .+...+..+..++...|++++|...+++.. ..+. .+...|..+..+|...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45556666655432 245566666666666677777766666665 3222 33455666666666666776666666666


Q ss_pred             HHh
Q 018924          111 EEQ  113 (349)
Q Consensus       111 ~~~  113 (349)
                      .+.
T Consensus        80 l~~   82 (115)
T 2kat_A           80 LAA   82 (115)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.00  E-value=8.7e-06  Score=55.20  Aligned_cols=95  Identities=7%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             ccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCc-c----HH
Q 018924           11 RTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVAL-D----WV   85 (349)
Q Consensus        11 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~   85 (349)
                      ++...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...+++.. +..... +    ..
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSK   79 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHH
Confidence            3566777788888888888888888888877642 256677778888888888888888888877 333211 1    33


Q ss_pred             HHHHHHHHHhhcCcHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAML  107 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~  107 (349)
                      .+..+..++...|+.+.|.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            4444555555555544444333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.95  E-value=0.00011  Score=50.20  Aligned_cols=79  Identities=15%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          173 AEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      |...+++..+.. +.+...+..+...|...|++++|...|++..+..+. +...|..+..+|...|++++|...|++.++
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455555555543 334555666666666777777777777766665432 445666666667777777777777776664


Q ss_pred             H
Q 018924          253 A  253 (349)
Q Consensus       253 ~  253 (349)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.94  E-value=0.00027  Score=50.12  Aligned_cols=88  Identities=11%  Similarity=-0.076  Sum_probs=38.4

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHH
Q 018924          195 LIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC  270 (349)
Q Consensus       195 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  270 (349)
                      |...|...+.+++|.++|++..+.|   +...+..|...|..    .+++++|.++|++..+.     +   +...+..|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g---~~~a~~~L   99 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----N---DQDGCLIL   99 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----T---CHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----C---CHHHHHHH
Confidence            3333333444444444444444432   33334444444443    44455555555554432     2   23333344


Q ss_pred             HHHHHh----cCChhhHHHHHHHHhhC
Q 018924          271 LDYFKD----EGDIGGAENFIELLNDK  293 (349)
Q Consensus       271 l~~~~~----~g~~~~a~~~~~~~~~~  293 (349)
                      -..|..    .++.++|..+|+...+.
T Consensus       100 g~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          100 GYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            444444    44455555555444444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.93  E-value=0.00044  Score=49.02  Aligned_cols=87  Identities=13%  Similarity=-0.030  Sum_probs=41.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      +...|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|..+|++..+.|   ++..+..|...|.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~  104 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            3333334444444555554444432   23334444444444    445555555555555443   3334444444444


Q ss_pred             c----CCCHHHHHHHHHHHHH
Q 018924          236 Q----NSQIHKAVEAMKKVLA  252 (349)
Q Consensus       236 ~----~~~~~~a~~~~~~~~~  252 (349)
                      .    .+++++|.++|++..+
T Consensus       105 ~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          105 AGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHH
Confidence            4    4555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.91  E-value=0.00011  Score=47.52  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ  301 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  301 (349)
                      +...+..+...+...|++++|...|++.++.       .| +...+..+..++...|++++|...+++.....+.+...+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~   80 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK   80 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence            3455666777777778888888888877754       33 456677777777778888888888877777666666666


Q ss_pred             HHHh-hhhh
Q 018924          302 DKLL-DNVQ  309 (349)
Q Consensus       302 ~~l~-~~~~  309 (349)
                      ..+. .+.+
T Consensus        81 ~~l~~~~~~   89 (91)
T 1na3_A           81 QNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            6655 5443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.90  E-value=2.8e-05  Score=55.89  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=67.0

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          166 KLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL----------LEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      +.+.+++|.+.++...+.. +.+...|..+..++...++          +++|...|++..+.++. +...|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            3445666666666666653 4455566666666666554          45888888888875543 5567777888777


Q ss_pred             cC-----------CCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924          236 QN-----------SQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY  273 (349)
Q Consensus       236 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~  273 (349)
                      ..           |++++|++.|+++++       +.|+...|...+..
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~~y~~al~~  133 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence            66           489999999999994       48877666555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.89  E-value=0.00012  Score=48.62  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=38.4

Q ss_pred             CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +...+..+..+|...|++++|...|++..+..+. +...|..+..+|...|++++|.+.|++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555666666666666666666666654432 344566666666666666666666666654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.88  E-value=0.00022  Score=46.05  Aligned_cols=56  Identities=25%  Similarity=0.386  Sum_probs=23.1

Q ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           87 YATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        87 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +..+...+...|++++|...|++..+.  .|+...++..+..++...|++++|...++
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   67 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQ   67 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            333444444444444444444444432  12221334444444444444444444444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.81  E-value=0.00022  Score=47.30  Aligned_cols=60  Identities=18%  Similarity=0.229  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           83 DWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        83 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +...+..+..+|...|++++|+..|++..+.  .|+...+|..+..+|...|++++|...|+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   65 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYA   65 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4455666667777777777777777776664  33333566777777777777777777766

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.68  E-value=0.00018  Score=51.68  Aligned_cols=38  Identities=3%  Similarity=-0.105  Sum_probs=18.9

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                      .+.+++|.+.+++..+.  .|+...+|+.+..++...+++
T Consensus        15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~   52 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQF   52 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhccc
Confidence            34455555555555543  333334555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.46  E-value=0.0054  Score=50.64  Aligned_cols=48  Identities=8%  Similarity=-0.074  Sum_probs=26.7

Q ss_pred             ccHHHHHHHHHHHh--hc---CcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh
Q 018924           82 LDWVIYATVGNGYG--KV---GLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG  131 (349)
Q Consensus        82 ~~~~~~~~li~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (349)
                      .+...|...+.+..  ..   ....+|..+|++..+.  .|+...+|..+..+|.
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~  244 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDI  244 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            34455555554432  22   2346788888888874  5555445555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.34  E-value=0.011  Score=48.95  Aligned_cols=62  Identities=11%  Similarity=0.027  Sum_probs=29.7

Q ss_pred             CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          188 DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      +..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|.++.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33444444444444455555555555555433  344444444444445555555555555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.29  E-value=0.0019  Score=55.22  Aligned_cols=62  Identities=13%  Similarity=-0.011  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHh-----cCC-CC-CcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWES-----QAL-CY-DTRIPNFLIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                      .+++.+..+|...|++++|..++++.++     .|. .| ...+++.|...|...|++++|..++++..
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3455666666666666666666655543     110 11 12346666666666666666666666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.25  E-value=0.0014  Score=43.06  Aligned_cols=56  Identities=20%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTR-IPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      ..+...|++++|...++...+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            33445555555555555555432 22333 4445555555555555555555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.22  E-value=0.0053  Score=52.60  Aligned_cols=90  Identities=10%  Similarity=0.037  Sum_probs=55.9

Q ss_pred             HHHHHhcCChHHHHHHHHHhhcC--CCCC----ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh------hcCCcchhh
Q 018924           55 LSAYADASDHEGIDKILTMMEAD--PNVA----LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ------IKGAKVNSA  122 (349)
Q Consensus        55 l~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~  122 (349)
                      +..+.+.|++++|+.++++....  .-+.    ....+++.|...|...|++++|+.++++..+.      ...|+...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33455667777777777766521  1111    22455677777777777777777777766542      112334356


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHH
Q 018924          123 YNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      ++.|...|...|++++|+.+++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Confidence            7777777777777777777776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.20  E-value=0.0045  Score=52.97  Aligned_cols=84  Identities=11%  Similarity=-0.050  Sum_probs=45.0

Q ss_pred             cCChHHHHHHHHHhhc--CC----CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh-----h-cCCcchhhHHHHHH
Q 018924           61 ASDHEGIDKILTMMEA--DP----NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQ-----I-KGAKVNSAYNVILT  128 (349)
Q Consensus        61 ~~~~~~a~~~~~~~~~--~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~~~~~l~~  128 (349)
                      .|++++|..++++...  +.    ..+....+++.|..+|...|++++|+.++++..+.     | ..|+...+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3556666666555431  11    11112345566666666666666666666665432     1 12333345666666


Q ss_pred             HHhhcCCHHHHHHHHH
Q 018924          129 LYGKYGKKDDVLRIWE  144 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~  144 (349)
                      .|...|++++|+.+++
T Consensus       391 ~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          391 LYMGLENKAAGEKALK  406 (433)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHH
Confidence            6666666666666665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.17  E-value=0.0015  Score=42.92  Aligned_cols=55  Identities=15%  Similarity=0.113  Sum_probs=32.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRY-TYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      ...+.+.|++++|+..|++..+... .+.. .+..+..++...|++++|...|++..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566666666666666665432 1344 55556666666666666666666655

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.14  E-value=0.0037  Score=53.57  Aligned_cols=95  Identities=11%  Similarity=-0.018  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc------CCCCCccH
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENG---ITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA------DPNVALDW   84 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~   84 (349)
                      ..+..+.+.|++++|+.++++..+..   +.|+    ..+++.+..+|...|++++|+.++++...      -...+...
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            34556778899999999999987641   2222    34789999999999999999988887642      12222345


Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      .+++.|...|...|++++|+.++++..+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            6688999999999999999999998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.09  E-value=0.061  Score=50.16  Aligned_cols=151  Identities=12%  Similarity=0.036  Sum_probs=80.9

Q ss_pred             HHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924           23 YYKTGNFEKLDS-LMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD  101 (349)
Q Consensus        23 ~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  101 (349)
                      ....+++++|.+ ++..     ++ +......++..+.+.|.++.|.++.+.        |..     -.......|+++
T Consensus       609 ~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~~-----~f~~~l~~~~~~  669 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD--------QDQ-----KFELALKVGQLT  669 (814)
T ss_dssp             HHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC--------HHH-----HHHHHHHHTCHH
T ss_pred             HHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC--------cch-----heehhhhcCCHH
Confidence            345677777766 4411     11 122235566666777777777654421        111     123445677888


Q ss_pred             HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 018924          102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWE  181 (349)
Q Consensus       102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  181 (349)
                      .|.++.+.+      .+. ..|..+...+.+.++++.|.+.|....        -|..+...+...|+.+...++-+...
T Consensus       670 ~A~~~~~~~------~~~-~~W~~la~~al~~~~~~~A~~~y~~~~--------d~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTDE------SAE-MKWRALGDASLQRFNFKLAIEAFTNAH--------DLESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTTC------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHT--------CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh------CcH-hHHHHHHHHHHHcCCHHHHHHHHHHcc--------ChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            777775442      223 578888888888888888887777221        13344444555566555554444444


Q ss_pred             hcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924          182 SQALCYDTRIPNFLIDVYCRNGLLEKAENLVN  213 (349)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  213 (349)
                      ..|      -++.-..+|.+.|++++|.+++.
T Consensus       735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          735 TTG------KFNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence            332      12333333444555555555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.04  E-value=0.0088  Score=42.50  Aligned_cols=80  Identities=20%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---cHHHHHHHHHHHHHcC-cccchhhHHHHHHHHhcCCCHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNG---LLEKAENLVNHEKLKG-REIHVKSWYYLATGYRQNSQIHKAVEAM  247 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~  247 (349)
                      .+.+.|.+..+.+ .++..+...+..++++.+   +++++..+|+.+.+.+ +.-+...+-.+.-+|.+.|++++|.+++
T Consensus        16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4444454444444 245555555556666655   4456666666666544 1112334444555566666666666666


Q ss_pred             HHHHH
Q 018924          248 KKVLA  252 (349)
Q Consensus       248 ~~~~~  252 (349)
                      +.+++
T Consensus        95 ~~lL~   99 (152)
T 1pc2_A           95 RGLLQ   99 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66663

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.93  E-value=0.012  Score=39.10  Aligned_cols=71  Identities=13%  Similarity=-0.051  Sum_probs=33.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          227 WYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       227 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      +..+...+.+.|++..|..+|+.+++....... -.+....+..+..++.+.|+++.|...++++....|.+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            334445555555555555555555543111100 11233445555555555555555555555555544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.86  E-value=0.12  Score=41.06  Aligned_cols=82  Identities=18%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcC-CCH
Q 018924          170 LESAEKIFEEWESQALCYD---TRIPNFLIDVYCR-----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQN-SQI  240 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~  240 (349)
                      ...|...+++..+.  .|+   ...|..|...|.+     -|+.++|.+.|++..+.++.-+..++......+++. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45666677777663  444   4578888888888     489999999999998865432466777788888884 889


Q ss_pred             HHHHHHHHHHHHH
Q 018924          241 HKAVEAMKKVLAA  253 (349)
Q Consensus       241 ~~a~~~~~~~~~~  253 (349)
                      +++.+++++.+..
T Consensus       257 ~~a~~~L~kAL~a  269 (301)
T 3u64_A          257 AGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.84  E-value=0.024  Score=40.27  Aligned_cols=90  Identities=13%  Similarity=0.031  Sum_probs=70.3

Q ss_pred             cHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcccccCCC--CHHHHHHHHHHHHhcC
Q 018924          204 LLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS---QIHKAVEAMKKVLAAYQTLVKWKP--SVESLAACLDYFKDEG  278 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g  278 (349)
                      ....+.+-|.+..+.+. ++..+...+..++++.+   ++++++.+|+...+.     . .|  +...+-.+.-+|.+.|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~-~p~~~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G-SKEEQRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S-CHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-CccchHHHHHHHHHHHHHcc
Confidence            35566777777766665 57888888888999988   677999999999976     3 35  3455566677789999


Q ss_pred             ChhhHHHHHHHHhhCCCCCchh
Q 018924          279 DIGGAENFIELLNDKGFIPTDL  300 (349)
Q Consensus       279 ~~~~a~~~~~~~~~~~~~~~~~  300 (349)
                      ++++|.+.++.+.+..|.+...
T Consensus        86 ~Y~~A~~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           86 EYEKALKYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999987766543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.83  E-value=0.013  Score=38.02  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          206 EKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       206 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      ++|..++++..+..+. ++.....+...+.+.|++++|+..|++++
T Consensus        26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A           26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444443322 33333334444444444444444444444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.68  E-value=0.058  Score=34.82  Aligned_cols=65  Identities=6%  Similarity=-0.058  Sum_probs=43.2

Q ss_pred             CccHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 018924           10 ARTTVVYNSMLKLYYKTGN---FEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMME   75 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   75 (349)
                      ++|...+..+..++...++   .++|..+|++..+.+.. +......+...+.+.|++++|+..|+++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456666666666654444   57777777777775432 55566666777777777777777777776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.55  E-value=0.21  Score=46.71  Aligned_cols=255  Identities=12%  Similarity=0.013  Sum_probs=137.3

Q ss_pred             HHHhcCChHHHHHHHHHhhcCC-CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhc-------CCcc-hhhHHHHH
Q 018924           57 AYADASDHEGIDKILTMMEADP-NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIK-------GAKV-NSAYNVIL  127 (349)
Q Consensus        57 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~-~~~~~~l~  127 (349)
                      +....|+.++++.++....... .-.+....=..+.-+...+|..+++..++.......-       .+.. ..+...|.
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4556777777777776654111 1112233334455666777776778887777655321       0111 01122333


Q ss_pred             HHHhhcCCHHHHHHHHH-HHHhhccCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHhc
Q 018924          128 TLYGKYGKKDDVLRIWE-LYKKAVKVLN--NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLI--DVYCRN  202 (349)
Q Consensus       128 ~~~~~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~  202 (349)
                      .+|..+++. ++.+.+. ...... +..  ..-.++...+...|+.+....++..+.+..   +..+...+.  -++...
T Consensus       463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence            333444443 3444444 332211 111  112234445667888888888888776532   223333333  344467


Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhH--HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCCh
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSW--YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDI  280 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~  280 (349)
                      |+.+.+..+.+.+... ..|....-  .++.-+|+..|+.....++++.+...      ...+......+.-++...|+.
T Consensus       538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d------~~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD------SNDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHTSSSC
T ss_pred             CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC------CcHHHHHHHHHHHHhhccCCH
Confidence            8988888888888763 12333222  23455788889987777788888753      223333333333345556777


Q ss_pred             hhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC---cchHHHHHHHHh
Q 018924          281 GGAENFIELLNDKGFIPTDLQDKLL-DNVQNG---KSNLETLRELYG  323 (349)
Q Consensus       281 ~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g---~~a~~~~~~m~~  323 (349)
                      +.+.++++.+...+-+....-..+. +....|   .++++++..+..
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            7777777766655433333222233 444444   578888888764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.46  E-value=0.061  Score=35.52  Aligned_cols=21  Identities=5%  Similarity=-0.086  Sum_probs=8.7

Q ss_pred             HHHHHhhcCcHHHHHHHHHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKS  110 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~  110 (349)
                      |...+.+.|++..|...|+..
T Consensus        11 lG~~~~~~~~y~~A~~W~~~A   31 (104)
T 2v5f_A           11 LGKVAYTEADYYHTELWMEQA   31 (104)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccchHHHHHHHHHH
Confidence            334444444444444444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.36  E-value=0.14  Score=35.34  Aligned_cols=68  Identities=16%  Similarity=0.030  Sum_probs=48.5

Q ss_pred             chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924          223 HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI  296 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  296 (349)
                      +.......+..+..+|+-++-.+++..+..      +..|++.....+..+|.+.|+..++.+++.++.+.|.+
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILK------NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhc------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            344556666677777777777777777543      45677777778888888888888888888888777654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.31  E-value=0.079  Score=37.27  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH------HHhcCChHHHHHHHHHhhcCC
Q 018924           12 TTVVYNSMLKLYYKTGNF------EKLDSLMHEMEENGITYDRY-TYCTRLSA------YADASDHEGIDKILTMMEADP   78 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~   78 (349)
                      |..+|=..+...-+.|++      ++..++|++.... ++|+.. .|..-+..      +...+++++|.++|+.+. +.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~-~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR-AN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HH
Confidence            677787788877777888      7888888887764 566532 11111111      123367777777777765 22


Q ss_pred             CCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCC
Q 018924           79 NVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGA  117 (349)
Q Consensus        79 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  117 (349)
                      .-+. ...|......-.+.|+++.|.+++......++.|
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            2222 5566666666667777777777777777654443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.27  E-value=0.085  Score=37.12  Aligned_cols=63  Identities=11%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          237 NSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       237 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      .++.++|.++|+.++..     .-+- ...|....+--.++|++..|++++......++.+.......+
T Consensus        73 i~D~d~aR~vy~~a~~~-----hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~  135 (161)
T 4h7y_A           73 IQEPDDARDYFQMARAN-----CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL  135 (161)
T ss_dssp             HHCGGGCHHHHHHHHHH-----CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHH-----hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            37888888999888765     3333 666666666667889999999999988888776766666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.19  E-value=0.11  Score=48.42  Aligned_cols=100  Identities=7%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      ...++..+.+.|.++.|+++.+.-.            .-.......|+++.|.++.+.+       .+...|..+...+.
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al  692 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASL  692 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHH
Confidence            3777778888888888887663211            1133456789999999886544       45678999999999


Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +.|+++.|++.|.++..          |..+...+...|+.+...++-+
T Consensus       693 ~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~  731 (814)
T 3mkq_A          693 QRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK  731 (814)
T ss_dssp             HTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence            99999999999998632          4445555555676666555444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.26  Score=35.91  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=53.5

Q ss_pred             HHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHH
Q 018924           92 NGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLE  171 (349)
Q Consensus        92 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (349)
                      ......|+++.|.++.+++      .+. ..|..|.......|+++-|.+.|...        .-+..+.-.|...|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~-~~Wk~Lg~~AL~~gn~~lAe~cy~~~--------~D~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDS-ITWERLIQEALAQGNASLAEMIYQTQ--------HSFDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCH-HHHHHHHHHHHHTTCHHHHHHHHHHT--------TCHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCH-HHHHHHHHHHHHcCChHHHHHHHHHh--------CCHHHHHHHHHHhCCHH
Confidence            4445566666666665553      122 46666666666666666666666611        11334444455556655


Q ss_pred             HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHH
Q 018924          172 SAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVN  213 (349)
Q Consensus       172 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  213 (349)
                      ...++-+.....|      -++.-...+.-.|+++++.++|.
T Consensus        78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence            5554444444333      23334444455566666666653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.02  E-value=0.21  Score=34.41  Aligned_cols=63  Identities=19%  Similarity=0.135  Sum_probs=26.7

Q ss_pred             hHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          122 AYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                      ..+..+..+...|.-+.-.+++.-.....+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            334444444444444444444442112333344444444444444444444444444444444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.32  Score=35.49  Aligned_cols=100  Identities=12%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHH
Q 018924           22 LYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLD  101 (349)
Q Consensus        22 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  101 (349)
                      ...+.|+++.|.++.+.+      -+...|..|.......|+++-|...|.+.. +         +..+.-.|.-.|+.+
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-S---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-C---------HHHHHHHHHHHTCHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-C---------HHHHHHHHHHhCCHH
Confidence            345567777777776554      256677777777777777777777777665 2         233445555566665


Q ss_pred             HHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924          102 KALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      ...++-+.....       .-++.....+...|+++++.++|.
T Consensus        78 ~L~kla~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           78 KLSKMQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHH
Confidence            555444433322       124455555666677777777765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.59  E-value=0.26  Score=33.65  Aligned_cols=89  Identities=11%  Similarity=-0.019  Sum_probs=46.1

Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHH---HHHHHHHHHHHhcccccCCC--CHHHHHHHHHHHHhc
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHK---AVEAMKKVLAAYQTLVKWKP--SVESLAACLDYFKDE  277 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~  277 (349)
                      ..+..+.+-|......|. ++..+--.+..++.+..+...   ++.++......     + .|  .....-.|.-++.+.
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~-~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G-SKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C-CcchHHHHHHHHHHHHHHh
Confidence            334444555554444333 445554555556666555444   66666665532     1 13  222333344456666


Q ss_pred             CChhhHHHHHHHHhhCCCCCc
Q 018924          278 GDIGGAENFIELLNDKGFIPT  298 (349)
Q Consensus       278 g~~~~a~~~~~~~~~~~~~~~  298 (349)
                      |++++|.+.++.+.+..|.+.
T Consensus        88 g~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCCH
Confidence            666666666666666655443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.53  E-value=7.5e-07  Score=74.91  Aligned_cols=241  Identities=12%  Similarity=0.054  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...|..|..+....+++.+|++-|-+.      -|+..|..++.+..+.|.+++-...+...+ +..-.|...  +.|+-
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~~ke~~ID--teLi~  124 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KKARESYVE--TELIF  124 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TTCCSTTTT--HHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccH--HHHHH
Confidence            456778888888888888887766221      266778889999999999999888886655 433334333  47899


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---------------------hcc
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---------------------AVK  151 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~~~  151 (349)
                      +|++.++..+-++++.       .|+. .-...+..-|...|.++.|.-+|.....                     .-.
T Consensus       125 ayAk~~rL~elEefl~-------~~N~-A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA  196 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  196 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSS-SCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred             HHHhhCcHHHHHHHHc-------CCCc-ccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988765444331       2444 4456666666666666666655541100                     001


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924          152 VLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLA  231 (349)
Q Consensus       152 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  231 (349)
                      .++.||-.+-.+|...+.+..|.-.--.+.-   .+|  -...++..|-..|.+++-..+++.-... -+.....|+-|.
T Consensus       197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa  270 (624)
T 3lvg_A          197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA  270 (624)
T ss_dssp             CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred             CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence            3445666666666666666555444333332   111  1223555566667777666666655521 123555666666


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      -.|++- ++++..+.++..-.        +.|   .--+|++|.+..-|.++.-++.
T Consensus       271 ILYsKY-~PeKlmEHlklf~s--------riN---ipKviracE~ahLW~ElvfLY~  315 (624)
T 3lvg_A          271 ILYSKF-KPQKMREHLELFWS--------RVN---IPKVLRAAEQAHLWAELVFLYD  315 (624)
T ss_dssp             HHHHSS-CTTHHHHHHTTSSS--------SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHHHHH--------hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence            666655 34444443333211        111   1245777777777777766554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.30  E-value=0.36  Score=32.97  Aligned_cols=93  Identities=9%  Similarity=0.004  Sum_probs=60.7

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHhhcCCCCC-ccHHHHHHHHHHHhhcC
Q 018924           23 YYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEG---IDKILTMMEADPNVA-LDWVIYATVGNGYGKVG   98 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g   98 (349)
                      -........+.+-|......|. |+..+--.+.-++++..+...   ++.+++.+. +.+.+ -.....-.|.-++.+.|
T Consensus        11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhh
Confidence            3334445566666666655554 566665556667777766555   888888887 44321 23444456778888999


Q ss_pred             cHHHHHHHHHHHHHhhcCCcc
Q 018924           99 LLDKALAMLKKSEEQIKGAKV  119 (349)
Q Consensus        99 ~~~~a~~~~~~~~~~~~~~~~  119 (349)
                      ++++|.+.++.+.+.  .|+.
T Consensus        89 ~Y~~A~~~~~~lL~~--eP~n  107 (126)
T 1nzn_A           89 EYEKALKYVRGLLQT--EPQN  107 (126)
T ss_dssp             CHHHHHHHHHHHHHH--CTTC
T ss_pred             hHHHHHHHHHHHHHh--CCCC
Confidence            999999999888874  5544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.10  E-value=0.99  Score=35.93  Aligned_cols=89  Identities=15%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CcHHHHHHHHHHHHHcCcc--cchh
Q 018924          154 NNGYRNVISSLLKL-----DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN-GLLEKAENLVNHEKLKGRE--IHVK  225 (349)
Q Consensus       154 ~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~  225 (349)
                      ...|..+...|.+.     |+.++|.+.|++.++.+..-+..++......+++. |+.+.+.+.+++.....+.  |+..
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~  278 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK  278 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence            45788999999884     99999999999999965333477788888889885 9999999999999997766  5544


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ..+.+        .-.+|..++.++
T Consensus       279 lan~~--------~q~eA~~LL~~~  295 (301)
T 3u64_A          279 LLVIL--------SQKRARWLKAHV  295 (301)
T ss_dssp             HHHHH--------HHHHHHHHHHTH
T ss_pred             HHHHH--------HHHHHHHHHHHh
Confidence            44433        335555555554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.98  E-value=5.4e-05  Score=63.99  Aligned_cols=211  Identities=13%  Similarity=0.153  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      .+|..|..++.+.|++.+|++.|-+       .+.+..|..++.+..+.|.+++-+.++.|.....+ ++..=+.++-+|
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ay  126 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL  126 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHH
Confidence            3467788888888877777765533       22225688888888888888888888886554433 333445788888


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc--------------------Ccccch
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK--------------------GREIHV  224 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~  224 (349)
                      ++.++..+.++++.       .||..-...+.+-|...|.++.|.-+|..+...                    .-.-++
T Consensus       127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~  199 (624)
T 3lvg_A          127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST  199 (624)
T ss_dssp             HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred             HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            88887665444332       455555666677777777777776666543211                    001255


Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924          225 KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL  304 (349)
Q Consensus       225 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  304 (349)
                      .||.-+-.+|...+.+.-|.-.--.++-        .|  .....++..|-..|-+++-..+++............|+-|
T Consensus       200 ktWKeV~~ACvd~~EfrLAqicGLniIv--------ha--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTEL  269 (624)
T 3lvg_A          200 RTWKEVCFACVDGKEFRLAQMCGLHIVV--------HA--DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL  269 (624)
T ss_dssp             CSHHHHTHHHHHSCTTTTTTHHHHHHHC--------CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHH
T ss_pred             hHHHHHHHHHhCchHHHHHHHhcchhcc--------cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            6777777777777766655443333321        12  2233455666777777777777776665444566677777


Q ss_pred             h-hhhhcC-cchHHHHHH
Q 018924          305 L-DNVQNG-KSNLETLRE  320 (349)
Q Consensus       305 ~-~~~~~g-~~a~~~~~~  320 (349)
                      . .|++.. ++-++.++-
T Consensus       270 aILYsKY~PeKlmEHlkl  287 (624)
T 3lvg_A          270 AILYSKFKPQKMREHLEL  287 (624)
T ss_dssp             HHHHHSSCTTHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHH
Confidence            7 777776 666555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.96  E-value=1.6  Score=37.52  Aligned_cols=259  Identities=9%  Similarity=0.031  Sum_probs=147.3

Q ss_pred             cCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHH--HHHHHHHhhcC
Q 018924           26 TGNFEKLDSLMHEMEEN-----GITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIY--ATVGNGYGKVG   98 (349)
Q Consensus        26 ~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g   98 (349)
                      .|+++.|++.+..+.+.     +..-.......++..|...++++...+.+..+..+.|..+...+.  ..++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            36788888887666542     233355678889999999999999988888776455654444332  22233332333


Q ss_pred             cHHH--HHHHHHHHHH--hh-cCCc--chhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccCCh-----hhHHHHHHHHh
Q 018924           99 LLDK--ALAMLKKSEE--QI-KGAK--VNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKVLN-----NGYRNVISSLL  165 (349)
Q Consensus        99 ~~~~--a~~~~~~~~~--~~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~-----~~~~~li~~~~  165 (349)
                      ..+.  -..+.+.+..  .| +...  .......|...+...|++.+|..++. ....-...+.     ..+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3222  1112211110  00 0010  11234678888999999999999999 4333222222     35667788899


Q ss_pred             ccCCHHHHHHHHHHHHh----cCCCCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHc-CcccchhhHH----HHHHHH
Q 018924          166 KLDDLESAEKIFEEWES----QALCYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKLK-GREIHVKSWY----YLATGY  234 (349)
Q Consensus       166 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~~  234 (349)
                      ..+++..|..++..+..    ....|+  ...+...+..+...+++.+|.+.|.++... ...-|...+.    .++.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~  268 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL  268 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            99999999999988753    111222  234566777778889999998888877542 1111222221    122222


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc--CChhhHHHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE--GDIGGAENFIEL  289 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~  289 (349)
                      .-.+..+.-..++......     ..-++...+..++.+|...  .+++...+.|..
T Consensus       269 iLa~~~~~~~~ll~~~~~~-----~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~  320 (445)
T 4b4t_P          269 VLSPYGNLQNDLIHKIQND-----NNLKKLESQESLVKLFTTNELMRWPIVQKTYEP  320 (445)
T ss_dssp             HHSSCSSTTHHHHHSHHHH-----SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred             HhCCCCchHHHHHHHHhhc-----ccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence            2222222223333443333     3345667788888888653  344555554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.87  E-value=0.28  Score=44.91  Aligned_cols=125  Identities=8%  Similarity=-0.090  Sum_probs=77.3

Q ss_pred             HHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCcchH--HHHHHHHHhcC-cHHHHHHHHHHHHHc------Cccc-ch--
Q 018924          158 RNVISSLLKLDD-LESAEKIFEEWESQALCYDTRIP--NFLIDVYCRNG-LLEKAENLVNHEKLK------GREI-HV--  224 (349)
Q Consensus       158 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~--  224 (349)
                      ..++..+...++ .+.|..+++++.+..  |...++  ..++..+...+ +--+|.+++.+..+.      ...+ +.  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            345555555555 577888888887753  322222  22333222222 222344444443321      1111 11  


Q ss_pred             --------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 018924          225 --------KSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       225 --------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                              .....=...|...|+++-|+++-+++..       ..| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    1122223456778999999999999984       477 47899999999999999999999998884

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.38  Score=44.09  Aligned_cols=127  Identities=14%  Similarity=0.011  Sum_probs=75.8

Q ss_pred             HHHHHHHhhcCc-HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHH-HHH------hhccCCh----
Q 018924           88 ATVGNGYGKVGL-LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWE-LYK------KAVKVLN----  154 (349)
Q Consensus        88 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~-~~~------~~~~~~~----  154 (349)
                      .+++..+...|+ .+.|..+|+++....+.... .....++..+...+ +--+|.+++. ...      ...++..    
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            455666655666 57788888888775332222 12223333333332 2224444444 211      1111111    


Q ss_pred             -------hhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHH
Q 018924          155 -------NGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEK  216 (349)
Q Consensus       155 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  216 (349)
                             .....=...|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|.-.++.+.
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                   112222445667899999999998888752 4456789999999999999999999888774

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.86  E-value=0.18  Score=42.48  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHH
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESL  267 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  267 (349)
                      ..++..+...|++++|...+..+....+ .+...|..+|.++.+.|+..+|++.|+...+...+..|+.|...+-
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3466667778888888888887776543 3666788888888888888888888888776555556888877653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.78  E-value=2.8  Score=39.49  Aligned_cols=261  Identities=12%  Similarity=0.009  Sum_probs=138.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHhhcCCC-C-----CccHHHHHHHHHHH
Q 018924           23 YYKTGNFEKLDSLMHEMEENGITYDRY--TYCTRLSAYADASDHEGIDKILTMMEADPN-V-----ALDWVIYATVGNGY   94 (349)
Q Consensus        23 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~~~~li~~~   94 (349)
                      ....|+.++++.++......+-..+..  .-..+.-+.+..|..+++..++.......+ +     .+....-.++.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445667777766666544321112322  223333345566666667776665441211 0     01122223344444


Q ss_pred             hhcCc-HHHHHHHHHHHHHhhcCCcc-hhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHH
Q 018924           95 GKVGL-LDKALAMLKKSEEQIKGAKV-NSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLES  172 (349)
Q Consensus        95 ~~~g~-~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (349)
                      +-.|. -+++.+.+..+.... .... ..+-.+|...++..|+.+....++.........+..-...+.-++...|+.+.
T Consensus       464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~  542 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL  542 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred             HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence            44443 245566665555421 1111 01223445556677888877777773222222222223334444557889999


Q ss_pred             HHHHHHHHHhcCCCCCcchH--HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          173 AEKIFEEWESQALCYDTRIP--NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       173 a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      +..+++.+.... .|....-  .++..+|+..|+.....++++.+.+.. ..++.....+.-++...|+.+.+.+++..+
T Consensus       543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L  620 (963)
T 4ady_A          543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL  620 (963)
T ss_dssp             GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence            998888887632 2222211  234556778899888888999888642 234444444555666677766666766655


Q ss_pred             HHHhcccccCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHhh
Q 018924          251 LAAYQTLVKWKPSVESLAACLDYFKDEGDI-GGAENFIELLND  292 (349)
Q Consensus       251 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~  292 (349)
                      .+      ...|....-..+.-+....|.. .++..++..+..
T Consensus       621 ~~------~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          621 SK------SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             GG------CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             Hh------cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            43      3355555444555555555554 467777777754

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.48  E-value=0.5  Score=30.54  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +.-+..+-++.+...     .+.|++....+.+++|.+.+|+..|.++|+-++.+-......|..++
T Consensus        25 D~~e~rrglN~l~~~-----DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGY-----DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTS-----SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence            444555556665554     66777777777777777777777777777777665333344565554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.29  E-value=1.3  Score=43.31  Aligned_cols=145  Identities=9%  Similarity=0.022  Sum_probs=88.3

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCC----------------
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVL----------------  153 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------  153 (349)
                      ++..+.+.+..+-+.++..-     ...+. ..--.+..++...|++++|.+.|+....++..+                
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~-~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            44445555555555443322     22233 344566778888999999999987322222111                


Q ss_pred             -------hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc
Q 018924          154 -------NNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDT----RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI  222 (349)
Q Consensus       154 -------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  222 (349)
                             ..=|..++..+-+.+.++.+.++-....+...+.+.    ..|..+...+...|++++|...+-.+.....+ 
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-  970 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-  970 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence                   012556677777788888888777766654222121    25777888888889999998888877765443 


Q ss_pred             chhhHHHHHHHHhcCCCHHH
Q 018924          223 HVKSWYYLATGYRQNSQIHK  242 (349)
Q Consensus       223 ~~~~~~~li~~~~~~~~~~~  242 (349)
                       ......|+..+|..|..+.
T Consensus       971 -~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          971 -KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             -HHHHHHHHHHHHHHCCHHH
T ss_pred             -HHHHHHHHHHHHhCCChhh
Confidence             3456666666666554433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.10  E-value=2  Score=35.01  Aligned_cols=19  Identities=5%  Similarity=0.104  Sum_probs=13.2

Q ss_pred             HHHhcCChhhHHHHHHHHh
Q 018924          273 YFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       273 ~~~~~g~~~~a~~~~~~~~  291 (349)
                      -|...+++..|..+++...
T Consensus       196 ~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHH
Confidence            3556788888888765544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.56  E-value=3.2  Score=35.60  Aligned_cols=243  Identities=10%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             CChHHHHHHHHHhhc----CCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHh----hc
Q 018924           62 SDHEGIDKILTMMEA----DPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYG----KY  133 (349)
Q Consensus        62 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  133 (349)
                      |+++.|++.+-.+.+    ..+...+......++..|...|+++...+.+.-+........  .+...+++.+.    ..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence            567777776655431    344556677788899999999999999888776654322222  23344444332    23


Q ss_pred             CCHHHHHH--HHHHHHhhccC--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----cchHHHHHHH
Q 018924          134 GKKDDVLR--IWELYKKAVKV--------LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYD-----TRIPNFLIDV  198 (349)
Q Consensus       134 ~~~~~a~~--~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~  198 (349)
                      ...+...+  +.+ ....+..        .......+...+...|++.+|..++..+...-...+     ...+...++.
T Consensus       108 ~~~d~~~~~~~i~-~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          108 KSLDLNTRISVIE-TIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             CTTHHHHHHHHHH-CCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHH-HHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            33332222  222 1111111        112235678888999999999999999864211111     2356677888


Q ss_pred             HHhcCcHHHHHHHHHHHHH----cCcccc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHH--
Q 018924          199 YCRNGLLEKAENLVNHEKL----KGREIH--VKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAAC--  270 (349)
Q Consensus       199 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l--  270 (349)
                      |...+++.+|..+++++..    ....|+  ...+...+..+...+++.+|.+.|.++...    ....-|...+..+  
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~----~~~~~d~~~~~~~L~  262 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT----DAIKSDEAKWKPVLS  262 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHSCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----ccccCCHHHHHHHHH
Confidence            9999999999999998753    222222  235677777888899999999999998764    1222233322222  


Q ss_pred             --HHHHHhcCChhhHHHHHHHHhh-CCCCCchhHHHHh-hhhhcC
Q 018924          271 --LDYFKDEGDIGGAENFIELLND-KGFIPTDLQDKLL-DNVQNG  311 (349)
Q Consensus       271 --l~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~-~~~~~g  311 (349)
                        +.+..-.+..+.-..++..... ...++...|..++ +|....
T Consensus       263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~  307 (445)
T 4b4t_P          263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNE  307 (445)
T ss_dssp             HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhch
Confidence              2222222222222333333222 2234556677788 777665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.05  E-value=3  Score=33.70  Aligned_cols=178  Identities=11%  Similarity=0.045  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHH----
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEK----  175 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----  175 (349)
                      +++.+.-++.-++.|-.-.....|.++..-|.+.+++++|++++...              ...+.+.|+...|-+    
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~l   78 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFY   78 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHH
Confidence            44445555555554444444456666667777777777777766510              011222333332222    


Q ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhcCcHH-HHHHHHHHHHH----cC--cccchhhHHHHHHHHhcCCCHHHHHHHHH
Q 018924          176 IFEEWESQALCYDTRIPNFLIDVYCRNGLLE-KAENLVNHEKL----KG--REIHVKSWYYLATGYRQNSQIHKAVEAMK  248 (349)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~  248 (349)
                      +++...+.+.+++......++..+.....-+ .=.++++++.+    .|  ..-|+.....+...|.+.|++.+|...|-
T Consensus        79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            3333444455555555555555544322111 11222233221    11  11255566666677777777776666442


Q ss_pred             -----------HHHHHhcccc-cCCCC-HHHH-HHHHHHHHhcCChhhHHHHHHHHh
Q 018924          249 -----------KVLAAYQTLV-KWKPS-VESL-AACLDYFKDEGDIGGAENFIELLN  291 (349)
Q Consensus       249 -----------~~~~~~~~~~-~~~p~-~~~~-~~ll~~~~~~g~~~~a~~~~~~~~  291 (349)
                                 .|+-...... .-.|. ...| ...+--|...|+...|..+++...
T Consensus       159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                       1111111110 01221 1111 222223557889999999887654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.89  E-value=0.52  Score=30.49  Aligned_cols=46  Identities=13%  Similarity=-0.078  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      +..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444455555555566666666666666666666666666666554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.77  E-value=3  Score=40.71  Aligned_cols=145  Identities=9%  Similarity=-0.025  Sum_probs=93.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcC----------------
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKG----------------  116 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------------  116 (349)
                      .++..+...+..+.+.++..... .     +...--.+..+|...|++++|.+.|++.... +.                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-S-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-C-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-C-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhccccccc
Confidence            45555666777777766555443 2     2222235777888899999999999765210 10                


Q ss_pred             ------CcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 018924          117 ------AKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN-----NGYRNVISSLLKLDDLESAEKIFEEWESQAL  185 (349)
Q Consensus       117 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  185 (349)
                            .....-|.-++..+-+.+.++.+.++-+.......++.     ..|..+..++...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                  00102366778888888999999888773322222222     2578889999999999999998877765433


Q ss_pred             CCCcchHHHHHHHHHhcCcHH
Q 018924          186 CYDTRIPNFLIDVYCRNGLLE  206 (349)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~~~~  206 (349)
                        -......|+...|..|+.+
T Consensus       970 --r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHCCHH
T ss_pred             --HHHHHHHHHHHHHhCCChh
Confidence              2345667777777766543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.68  E-value=1.3  Score=30.38  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +.-+..+-++.+...     .+.|++......+++|.+.+|+..|.++|+-++.+-.+....|..++
T Consensus        68 D~wElrrglN~l~~~-----DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGY-----DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTS-----SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence            344555555665554     77788888888888888888888888888887776444455566665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.56  E-value=0.64  Score=39.10  Aligned_cols=197  Identities=10%  Similarity=-0.059  Sum_probs=108.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh-cCChHHHHHHHHHhh------cCCCCCcc
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGIT-YDRYTYCTRLSAYAD-ASDHEGIDKILTMME------ADPNVALD   83 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~------~~~~~~~~   83 (349)
                      +...+..|.-.....|+.-...++.+.+-....+ ....+....+.-+-+ .+.....-..+....      .......|
T Consensus        32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D  111 (388)
T 2ff4_A           32 TPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCD  111 (388)
T ss_dssp             SHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBH
T ss_pred             ChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccch
Confidence            4555555555555667777777777777654321 122333333332221 111100000111111      01122345


Q ss_pred             HHHHHHHHHHHh---hcCcHHHHHHHHHHHHHh--hcCCcchhhHHHHHHHHhhcCCHHHH-HHHHH-HHHhhccCChhh
Q 018924           84 WVIYATVGNGYG---KVGLLDKALAMLKKSEEQ--IKGAKVNSAYNVILTLYGKYGKKDDV-LRIWE-LYKKAVKVLNNG  156 (349)
Q Consensus        84 ~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~-~~~~~~~~~~~~  156 (349)
                      ...|..++..-.   ..|+.+.|.+.+++....  |..... ..          ...|-.. ..-++ ...       ..
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-~~----------~~~w~~~~r~~l~~~~~-------~a  173 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-LR----------DFQFVEPFATALVEDKV-------LA  173 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-GT----------TSTTHHHHHHHHHHHHH-------HH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-CC----------chhHHHHHHHHHHHHHH-------HH
Confidence            556665554332   357888888888887653  221111 00          0111111 11222 111       13


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCcccchhhH
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKL-----KGREIHVKSW  227 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  227 (349)
                      ...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|.+.|+.+.+     .|+.|...+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            4456777888999999998888887654 56777888999999999999999999987653     5888877653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.36  E-value=2.7  Score=30.19  Aligned_cols=26  Identities=4%  Similarity=-0.023  Sum_probs=19.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          268 AACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       268 ~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      --+..||.+.+++++|..+++.+...
T Consensus       126 ykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          126 YKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            34667788899999999888766443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.18  E-value=2.6  Score=28.96  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      ++..+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.++
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444443321122333344445555555555555555555

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=89.86  E-value=2.2  Score=29.31  Aligned_cols=60  Identities=15%  Similarity=-0.016  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLD  272 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~  272 (349)
                      +..+-++.+...++.|++......+.+|-+.+++..|.++|+-++.      ++.+...+|..+++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~------K~~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD------KAGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH------hcCCchhhHHHHHH
Confidence            4455566666667778888888888888888888888888887775      34444555666654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.18  E-value=3.1  Score=26.82  Aligned_cols=81  Identities=16%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHH
Q 018924          205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAE  284 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  284 (349)
                      .++|..+-+-+...+.  ....--+-+..+.+.|++++|..+.+.         ...||...|..|-.  .+.|-..++.
T Consensus        23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~---------~c~pdlepw~ALce--~rlGl~s~le   89 (116)
T 2p58_C           23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK---------LAYPDLEPWLALCE--YRLGLGSALE   89 (116)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT---------SCCGGGHHHHHHHH--HHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC---------CCCchHHHHHHHHH--HhcccHHHHH
Confidence            4555555555544432  111111222345566666666665544         33566666655543  3566666666


Q ss_pred             HHHHHHhhCCCCCc
Q 018924          285 NFIELLNDKGFIPT  298 (349)
Q Consensus       285 ~~~~~~~~~~~~~~  298 (349)
                      ..+.++...+.|..
T Consensus        90 ~rL~~la~sg~p~~  103 (116)
T 2p58_C           90 SRLNRLARSQDPRI  103 (116)
T ss_dssp             HHHHHHTTCCCHHH
T ss_pred             HHHHHHHhCCCHHH
Confidence            66655555554433

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.10  E-value=2.9  Score=26.90  Aligned_cols=53  Identities=11%  Similarity=-0.000  Sum_probs=25.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 018924          233 GYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFI  296 (349)
Q Consensus       233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  296 (349)
                      .+.+.|++++|..+.+.         ...||...|..|-.  .+.|-.+++...+.++...+.|
T Consensus        48 SLmNrG~Yq~Al~l~~~---------~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg~p  100 (115)
T 2uwj_G           48 SLANQGRYQEALAFAHG---------NPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSSDP  100 (115)
T ss_dssp             HHHHTTCHHHHHGGGTT---------CCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSSH
T ss_pred             HHHcchhHHHHHHhcCC---------CCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCH
Confidence            34455555555554433         33455555544433  2555555555555455444433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.97  E-value=6.2  Score=33.64  Aligned_cols=60  Identities=8%  Similarity=-0.002  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 018924           15 VYNSMLKLYYKTGNFEKLDSLMHEMEEN--GITYDRYTYCTRLSAYADASDHEGIDKILTMM   74 (349)
Q Consensus        15 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~   74 (349)
                      ++..+...|.+.|++++|.+.|.++...  +...-...+-.+++.+...+++..+...+.+.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3445666666666666666666666553  22222345555666666666666666666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=88.93  E-value=4.2  Score=27.94  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             CcccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          219 GREIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       219 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      +..|+..+--.+..++.+..+   ..+++.++....+.     +..-....+-.|.-++.+.|++++|++..+.+.+..|
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP  109 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  109 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            344666665666677777654   55789999998876     4111345556667789999999999999999999877


Q ss_pred             CCch
Q 018924          296 IPTD  299 (349)
Q Consensus       296 ~~~~  299 (349)
                      .+..
T Consensus       110 ~N~Q  113 (134)
T 3o48_A          110 NNKQ  113 (134)
T ss_dssp             TCHH
T ss_pred             CCHH
Confidence            6654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.34  E-value=5.7  Score=27.66  Aligned_cols=65  Identities=8%  Similarity=-0.010  Sum_probs=31.1

Q ss_pred             CCcchHHHHHHHHHhcCc---HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          187 YDTRIPNFLIDVYCRNGL---LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       187 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      |+..+--.+..++.++..   ..++..+++.+...+..-.....-.|.-++.+.|++++|.++.+.++
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL  104 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  104 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333334444444443   33455555555544322122233344455566666666666666665

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=86.63  E-value=9.4  Score=31.49  Aligned_cols=62  Identities=23%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC----cchHHHHHHHHhCCCCC
Q 018924          267 LAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG----KSNLETLRELYGNSLAG  328 (349)
Q Consensus       267 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g----~~a~~~~~~m~~~~~~p  328 (349)
                      ...++.-|...|+.++|.+.++++.....-...+...+. ++-+.+    +...+++..+...|+-+
T Consensus       220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls  286 (358)
T 3eiq_C          220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT  286 (358)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence            466677777778888888888777542222222333334 444432    34566676666665443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.10  E-value=4.9  Score=34.28  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCcHHHHHHHHHHHHH---cCcccchhh--HH
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCY--DTRIPNFLIDVYCRNGLLEKAENLVNHEKL---KGREIHVKS--WY  228 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~  228 (349)
                      +...+...|.+.|+++.|.+.+.++...-..+  -...+-.+++.+...+++..+...+.++..   .+..|+...  ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            55667777777777777777777776532222  223455566666777777777777766653   222222211  11


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          229 YLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       229 ~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .-...+...+++..|...|.++...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            1222344566777777777776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.05  E-value=4.8  Score=31.53  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=42.2

Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKG  219 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  219 (349)
                      ....+.|++++++.....-++.. +.|...-..|+..+|-.|++++|.+-++...+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~   61 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF   61 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34567788888888777777664 5566677778888888888888888888777643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.91  E-value=7.8  Score=27.81  Aligned_cols=116  Identities=8%  Similarity=-0.046  Sum_probs=55.8

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhh-cCCcc------hhhHHHHHHHHhhcCCHHHHHHHHHH--HHhhccCCh-hhHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQI-KGAKV------NSAYNVILTLYGKYGKKDDVLRIWEL--YKKAVKVLN-NGYRN  159 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~-~~~~~  159 (349)
                      -+..+...|.++.|+-+.+.+.... ..++.      ..++..+.+++...+++..|...|+.  .....-+.. .++..
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            4556666777777777666654421 11110      01456666777777888888877772  122211111 11111


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          160 VISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       160 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      +..   ....+.          ......+...-..+..+|.+.+++++|..+++.+..+
T Consensus       106 ~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          106 TGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             ccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            100   000000          0011223344445667777778888887777766543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.87  E-value=4.3  Score=31.80  Aligned_cols=73  Identities=11%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             HHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924          197 DVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY  273 (349)
Q Consensus       197 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~  273 (349)
                      ....+.|++++|......-++..+. |...-..++.-+|-.|++++|.+-++...+.   .+...|...+|..+|.+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH
Confidence            3456789999999999988887654 7777788999999999999999999998865   11222234455555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=84.70  E-value=4.1  Score=31.89  Aligned_cols=16  Identities=6%  Similarity=-0.053  Sum_probs=8.8

Q ss_pred             HHHHHHHhCCCCCCcc
Q 018924          316 ETLRELYGNSLAGNEE  331 (349)
Q Consensus       316 ~~~~~m~~~~~~p~~~  331 (349)
                      ++.+-+.+.|..|+..
T Consensus       267 ~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          267 KIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHHHSSCSCCS
T ss_pred             HHHHHHHHcCCCCCcc
Confidence            3444455566666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.12  E-value=9.6  Score=26.56  Aligned_cols=74  Identities=12%  Similarity=0.084  Sum_probs=54.1

Q ss_pred             ccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCC
Q 018924          221 EIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIP  297 (349)
Q Consensus       221 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  297 (349)
                      .|+..+--.+..++.+..+   ..+++.+++.....     +..-.....-.|.-++.+.|++++|+++.+.+.+..|.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            4666666667777777764   55788899998875     321133444556668999999999999999999987766


Q ss_pred             ch
Q 018924          298 TD  299 (349)
Q Consensus       298 ~~  299 (349)
                      ..
T Consensus       111 ~Q  112 (144)
T 1y8m_A          111 KQ  112 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.57  E-value=13  Score=27.67  Aligned_cols=56  Identities=11%  Similarity=-0.021  Sum_probs=42.2

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhccC
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAVKV  152 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~  152 (349)
                      ++...++..+|..|...|+....+.-|......+-..|++.+|.++|+ -...+..|
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            444668888888888888877776678888888888888888888888 44445455

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.45  E-value=30  Score=31.10  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHHcCcccchh----hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCC
Q 018924          204 LLEKAENLVNHEKLKGREIHVK----SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGD  279 (349)
Q Consensus       204 ~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~  279 (349)
                      +.+.|...+....+... .+..    .+..+...+...+...++...+......       .++.....-.+....+.|+
T Consensus       229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~r~Alr~~d  300 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-------SQSTSLIERRVRMALGTGD  300 (618)
T ss_dssp             CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-------CCCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-------CCChHHHHHHHHHHHHCCC
Confidence            67888888887765332 1222    2233333444555455666677665432       3343334444444557799


Q ss_pred             hhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          280 IGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       280 ~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      ++.|...|+.|.........-..-+. ++...|  ++|..+|+.+.+
T Consensus       301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999888664222222222223 666667  678888877653

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=81.38  E-value=14  Score=29.78  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=17.9

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHH
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSE  111 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~  111 (349)
                      ..++.-|...|+.++|...++++.
T Consensus         7 ~~ii~EYf~~~d~~Ea~~~l~el~   30 (307)
T 2zu6_B            7 TPIIQEYFEHGDTNEVAEMLRDLN   30 (307)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhC
Confidence            457777777888888888877764

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=80.82  E-value=14  Score=30.56  Aligned_cols=61  Identities=11%  Similarity=0.196  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ--IHKAVEAMKKVLAA  253 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~  253 (349)
                      .+.++.-|...|+.++|.+.++++...... .......+..++-+.++  .+...+++..+...
T Consensus       220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~  282 (358)
T 3eiq_C          220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS  282 (358)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            456777788888888888888887642222 22334444555554432  34566666666654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.11  E-value=22  Score=28.69  Aligned_cols=130  Identities=8%  Similarity=-0.056  Sum_probs=79.3

Q ss_pred             HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHH
Q 018924          129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKA  208 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  208 (349)
                      .....|++=+|.+.++              ++..=|.+.+++++|.+++..--               ..+.+.|+...|
T Consensus        22 ~~I~~G~yYEAhQ~~R--------------tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa   72 (312)
T 2wpv_A           22 NKIKAGDYYEAHQTLR--------------TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSG   72 (312)
T ss_dssp             HHHHHTCHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred             HHhhccChHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence            3344566656655554              56666778888888888775432               122344554444


Q ss_pred             HH----HHHHHHHcCcccchhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHhccccc-CCCCHHHHHHHHHHHHhcCChhh
Q 018924          209 EN----LVNHEKLKGREIHVKSWYYLATGYRQNSQI-HKAVEAMKKVLAAYQTLVK-WKPSVESLAACLDYFKDEGDIGG  282 (349)
Q Consensus       209 ~~----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~  282 (349)
                      -+    +.+...+.+.+++......++..+.....- ..=.++++++++......+ ..-++.....+...|.+.|++.+
T Consensus        73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~  152 (312)
T 2wpv_A           73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE  152 (312)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence            33    445555667778887778887776553321 1235566666654221112 22377888888899999999988


Q ss_pred             HHHHH
Q 018924          283 AENFI  287 (349)
Q Consensus       283 a~~~~  287 (349)
                      |+.-|
T Consensus       153 A~~H~  157 (312)
T 2wpv_A          153 AERYF  157 (312)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.25
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.25
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.87
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.33
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.21
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.18
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.17
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.96
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.9
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.88
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.83
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.78
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.77
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.76
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.71
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.0
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.97
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.02
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.26
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.12
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	92.31

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.5e-22  Score=165.66  Aligned_cols=303  Identities=14%  Similarity=0.104  Sum_probs=228.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCc
Q 018924           20 LKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGL   99 (349)
Q Consensus        20 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~   99 (349)
                      ...+.+.|++++|++.|+++.+... -+...+..+..++.+.|++++|...+++.. +.+. -+..+|..+..+|.+.|+
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p-~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI-KQNP-LLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHhhhhcc
Confidence            3445566677777777766665432 145566666666666677777777666665 3222 344556666666666677


Q ss_pred             HHHHHHHHHHHHHhh-----------------------------------------------------------------
Q 018924          100 LDKALAMLKKSEEQI-----------------------------------------------------------------  114 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~-----------------------------------------------------------------  114 (349)
                      +++|...+....+..                                                                 
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            766666665554321                                                                 


Q ss_pred             -cCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHH
Q 018924          115 -KGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPN  193 (349)
Q Consensus       115 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  193 (349)
                       ..|+...++..+...+...|++++|...++......+.+...+..+...+...|++++|...++...... +.+...+.
T Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  241 (388)
T d1w3ba_         163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence             1233335666777788889999999999984444444556788899999999999999999999988765 45567788


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHH
Q 018924          194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDY  273 (349)
Q Consensus       194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~  273 (349)
                      .+...+.+.|++++|...|++..+..+. +..+|..+...+...|++++|.+.++.....      .+.+...+..+...
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~  314 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc------CCccchhhhHHHHH
Confidence            8899999999999999999999886543 5678889999999999999999999998863      34567888888999


Q ss_pred             HHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccC
Q 018924          274 FKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSG  335 (349)
Q Consensus       274 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~  335 (349)
                      +...|++++|...+++..+..|.+...|..+. .+.+.|  ++|...|++..+  +.|+......
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~  377 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYS  377 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence            99999999999999999988888888899899 999999  899999999886  4687654333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-20  Score=154.43  Aligned_cols=287  Identities=11%  Similarity=0.001  Sum_probs=241.6

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCC-----------
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNV-----------   80 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------   80 (349)
                      +...+..+...+.+.|++++|+..|++..+.+.. +..+|..+..++.+.|++++|...+.... +...           
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKPDFIDGYINLAA  109 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccccccc-ccccccccccccccc
Confidence            6788999999999999999999999999887532 56789999999999999999998887765 2111           


Q ss_pred             --------------------------------------------------------CccHHHHHHHHHHHhhcCcHHHHH
Q 018924           81 --------------------------------------------------------ALDWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        81 --------------------------------------------------------~~~~~~~~~li~~~~~~g~~~~a~  104 (349)
                                                                              +.+...+..+...+...|++++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence                                                                    012344555667788899999999


Q ss_pred             HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                      ..+++..+.  .|+...+|..+...+...|++++|...++......+.+...+..+...+.+.|++++|...|++..+..
T Consensus       190 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  267 (388)
T d1w3ba_         190 HHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ  267 (388)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999998874  455557899999999999999999999995455555667788889999999999999999999998864


Q ss_pred             CCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-C
Q 018924          185 LCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-S  263 (349)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~  263 (349)
                       +.+..++..+...+...|++++|...++......+ .+...+..+...+...|++++|++.|++++       .+.| +
T Consensus       268 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------~~~p~~  338 (388)
T d1w3ba_         268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKAL-------EVFPEF  338 (388)
T ss_dssp             -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHT-------TSCTTC
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCC
Confidence             44567888999999999999999999999887654 367788899999999999999999999998       4466 4


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC
Q 018924          264 VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG  311 (349)
Q Consensus       264 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g  311 (349)
                      ..++..+..+|.+.|++++|...|+++.+..|.+...|..+. .|.+.|
T Consensus       339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            677888999999999999999999999998888888899888 776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-15  Score=123.74  Aligned_cols=260  Identities=10%  Similarity=-0.058  Sum_probs=178.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhc
Q 018924           18 SMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKV   97 (349)
Q Consensus        18 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~   97 (349)
                      .....+.+.|++++|+..|+++++.... +..+|..+..++...|++++|...+++.. +... -+...|..+..+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCL-ELKP-DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhh-cccc-cccccccccccccccc
Confidence            3566788999999999999999987533 67789999999999999999999999987 4333 4567788899999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCcchhhH---------------HHHHHHHhhcCCHHHHHHHHHH-HH-hhccCChhhHHHH
Q 018924           98 GLLDKALAMLKKSEEQIKGAKVNSAY---------------NVILTLYGKYGKKDDVLRIWEL-YK-KAVKVLNNGYRNV  160 (349)
Q Consensus        98 g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~-~~-~~~~~~~~~~~~l  160 (349)
                      |++++|.+.+++.....  |+....+               ...+..+...+.+.+|...|.. .. ....++...+..+
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999987642  2221111               1112233344566667777662 21 1122344566777


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCH
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQI  240 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  240 (349)
                      ...+...|++++|...+++..... +.+...|..+...|...|++++|.+.|++..+..+. +..+|..+..+|.+.|++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCH
Confidence            777888888888888888877653 335667777888888888888888888887775432 456677788888888888


Q ss_pred             HHHHHHHHHHHHHhcccccCC-----CCHHHHHHHHHHHHhcCChhhHH
Q 018924          241 HKAVEAMKKVLAAYQTLVKWK-----PSVESLAACLDYFKDEGDIGGAE  284 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~g~~~~a~  284 (349)
                      ++|++.|+++++..+...+..     .....|..+-.++...|+.+.+.
T Consensus       257 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         257 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            888888888876422211111     11233444555555556655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-15  Score=122.11  Aligned_cols=228  Identities=12%  Similarity=0.037  Sum_probs=180.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh
Q 018924           53 TRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK  132 (349)
Q Consensus        53 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (349)
                      .....+.+.|++++|...|++.. +... -+..+|..+..++...|++++|...|++..+.  .|+....|..+...|..
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccc
Confidence            45667889999999999999988 4443 46788999999999999999999999999874  45555789999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCCh-hh---------------HHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCCcchHHHH
Q 018924          133 YGKKDDVLRIWELYKKAVKVLN-NG---------------YRNVISSLLKLDDLESAEKIFEEWESQAL-CYDTRIPNFL  195 (349)
Q Consensus       133 ~~~~~~a~~~~~~~~~~~~~~~-~~---------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l  195 (349)
                      .|++++|.+.++..... .|+. ..               ....+..+...+.+.+|...+....+... ..+..++..+
T Consensus       100 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_         100 ESLQRQACEILRDWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             TTCHHHHHHHHHHHHHT-STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             cccccccccchhhHHHh-ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999832222 2221 10               11122233445667788888888776432 2345667788


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHH
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYF  274 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~  274 (349)
                      ...+...|++++|...|++.....+. +...|..+...|...|++++|.+.|+++++.       .| +...+..+..+|
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL-------QPGYIRSRYNLGISC  250 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH-------hhccHHHHHHHHHHH
Confidence            88999999999999999999886543 5778889999999999999999999999864       55 567888899999


Q ss_pred             HhcCChhhHHHHHHHHhhC
Q 018924          275 KDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       275 ~~~g~~~~a~~~~~~~~~~  293 (349)
                      .+.|++++|...|++..+.
T Consensus       251 ~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHh
Confidence            9999999999999988764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.4e-11  Score=96.80  Aligned_cols=213  Identities=9%  Similarity=0.001  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhhHHHHHH
Q 018924           84 WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYG-KKDDVLRIWELYKKAVKVLNNGYRNVIS  162 (349)
Q Consensus        84 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~  162 (349)
                      ...|+.+...+.+.+.+++|+++++++++.  .|+...+|+....++...| ++++|+..++......+-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            344555666667777777777777777763  4555457777777776655 4677777777444444555667777777


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC---
Q 018924          163 SLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ---  239 (349)
Q Consensus       163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---  239 (349)
                      .+.+.|++++|...++++.+.. +.+...|..+...+...|++++|...++.+.+.++. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            7777777777777777777653 445667777777777777777777777777775543 45566655555444433   


Q ss_pred             ---HHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CCchhHHHHh-hhh
Q 018924          240 ---IHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGF--IPTDLQDKLL-DNV  308 (349)
Q Consensus       240 ---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~-~~~  308 (349)
                         +++|++.+.++++.       .| +...|..+...+. ....+++.+.++...+..+  .+...+..+. .|.
T Consensus       199 ~~~~~~ai~~~~~al~~-------~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKL-------VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHh-------CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence               56777777777743       45 4555555544443 3345666677766655433  2333344444 443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.2e-11  Score=95.17  Aligned_cols=214  Identities=10%  Similarity=0.022  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHhhcCCcchhhHHHHHH
Q 018924           50 TYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG-LLDKALAMLKKSEEQIKGAKVNSAYNVILT  128 (349)
Q Consensus        50 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  128 (349)
                      .|+.+...+.+.+..++|+.+++++. +.++ -+...|+....++...| ++++|+..++...+.  .|+...+|+.+..
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai-~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~  120 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH-HHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence            34444444555555566666665555 3222 33444555555555544 356666666655553  3333345666666


Q ss_pred             HHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc----
Q 018924          129 LYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL----  204 (349)
Q Consensus       129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  204 (349)
                      .+.+.|++++|+..++......+.+...|..+...+...|++++|.+.++.+.+.+ +.+...|+.+...+.+.+.    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            66666666666666663333344445556666666666666666666666665543 3344455544444444333    


Q ss_pred             --HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHH
Q 018924          205 --LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFK  275 (349)
Q Consensus       205 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~  275 (349)
                        +++|...+....+..+. +...|+.+...+... ..+++.+.++...+.     ...+ +...+..+...|.
T Consensus       200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l-----~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDL-----QPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH-----TTTCCCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHh-----CCCcCCHHHHHHHHHHHH
Confidence              46677777766665432 455566555544433 346666666666644     2222 3444555555553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=4.6e-10  Score=92.07  Aligned_cols=277  Identities=11%  Similarity=-0.006  Sum_probs=194.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHH
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYD----RYTYCTRLSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIY   87 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~   87 (349)
                      .......+...|++++|+.++++..+.....+    ..++..+..++...|++++|...+++...   ..+. ......+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34445667899999999999999987632211    23667778889999999999999988752   1111 1223455


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcC------CcchhhHHHHHHHHhhcCCHHHHHHHHH-HHHhhc----cCChhh
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKG------AKVNSAYNVILTLYGKYGKKDDVLRIWE-LYKKAV----KVLNNG  156 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~----~~~~~~  156 (349)
                      ..+...+...|++..+...+.+.......      +.....+..+...+...|+++.+...+. ......    ......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            67788899999999999999887653211      1111355667788899999999999998 322211    122344


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCC--CC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc---chhhH
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQAL--CY----DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI---HVKSW  227 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~  227 (349)
                      +......+...++...+...+........  ..    ....+..+...+...|+++.|...+..........   ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            56666777888999999988877654211  11    12235566777888999999999998876543222   23456


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       228 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ..+...+...|++++|...++.++..... .+..| ....+..+...|.+.|++++|.+.+++....
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhh-cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            66788999999999999999998754111 13334 3456777888999999999999999887653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.6e-10  Score=93.26  Aligned_cols=221  Identities=9%  Similarity=-0.046  Sum_probs=160.5

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--------------cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q 018924           29 FEKLDSLMHEMEENGITYDRYTYCTRLSAYAD--------------ASDHEGIDKILTMMEADPNVALDWVIYATVGNGY   94 (349)
Q Consensus        29 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~   94 (349)
                      .+.+..+|+++...- +.++..|...+.-+-.              .+..++|..+|++.. ....+.+...|...+..+
T Consensus        32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral-~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence            455777888887752 3355666555543322              234577888998887 544445667778888888


Q ss_pred             hhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHH-HhccCCHHHH
Q 018924           95 GKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISS-LLKLDDLESA  173 (349)
Q Consensus        95 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a  173 (349)
                      .+.|+++.|..+|+++.+..+.... .+|...+....+.|+.+.|.++|+......+.+...|...... +...|+.+.|
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a  188 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHH
Confidence            8999999999999998874333223 5788899999999999999999984444444455555544433 3456889999


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc-ccc--hhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 018924          174 EKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR-EIH--VKSWYYLATGYRQNSQIHKAVEAMKKV  250 (349)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~  250 (349)
                      ..+|+.+.+.. +.+...|...+..+.+.|+++.|+.+|++...... .|+  ...|...+..-...|+.+.+..+++++
T Consensus       189 ~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999988763 55677888889999999999999999998877542 332  346787887777889999999999888


Q ss_pred             HHH
Q 018924          251 LAA  253 (349)
Q Consensus       251 ~~~  253 (349)
                      .+.
T Consensus       268 ~~~  270 (308)
T d2onda1         268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3.3e-10  Score=88.89  Aligned_cols=202  Identities=13%  Similarity=0.040  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 018924           85 VIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSL  164 (349)
Q Consensus        85 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  164 (349)
                      .+|..+..+|.+.|++++|++.|++..+.  .|+.+.+|+.+..++...|++++|+..|+......+.+..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            34555666777777777777777777653  4455466777777777777777777777743333344455666667777


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC----H
Q 018924          165 LKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ----I  240 (349)
Q Consensus       165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~  240 (349)
                      ...|++++|...++...+.. +.+......+...+.+.+..+.+..+........  ++...++ ++..+.....    .
T Consensus       116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence            77777777777777766643 2233333333444444555444444444444321  1222222 2222222111    1


Q ss_pred             HHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCch
Q 018924          241 HKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       241 ~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      +.+...+....       ...|+ ..++..+...+...|++++|...|+......|.+..
T Consensus       192 ~~~~~~~~~~~-------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         192 ERLKADATDNT-------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHHHCCSHH-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHhh-------hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            12222221111       11222 234555666777777777777777777766554433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=9.9e-10  Score=88.54  Aligned_cols=188  Identities=12%  Similarity=0.054  Sum_probs=149.2

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHH
Q 018924           28 NFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAML  107 (349)
Q Consensus        28 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  107 (349)
                      ..++|..+|++..+...+.+...|...+....+.|+++.|..+|+++. .........+|...+..+.+.|+++.|.++|
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l-~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            457888999998876445566688888888999999999999999998 5444344567899999999999999999999


Q ss_pred             HHHHHhhcCCcchhhHHHHHHH-HhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC-C
Q 018924          108 KKSEEQIKGAKVNSAYNVILTL-YGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA-L  185 (349)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~  185 (349)
                      ++..+..+  .....|...... +...|+.+.|..+|+......+.+...|...+..+.+.|+.+.|..+|++..+.. .
T Consensus       158 ~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99987543  332455544443 3456899999999995555566677889999999999999999999999988754 2


Q ss_pred             CCC--cchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          186 CYD--TRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       186 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .|+  ...|...+..-...|+.+.+..+++++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            332  346888888888899999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4.2e-10  Score=88.29  Aligned_cols=217  Identities=13%  Similarity=-0.001  Sum_probs=143.6

Q ss_pred             ChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHH
Q 018924           28 NFEKLDSLMHEMEENGI-TY--DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKAL  104 (349)
Q Consensus        28 ~~~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  104 (349)
                      +.+.++.-+++...... .+  ...+|..+..+|.+.|++++|...|++.. +.+. -+..+|+.+..+|.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al-~l~p-~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh-ccCC-CCHHHHhhhchHHHHHHHHHHhh
Confidence            34556666667665422 21  12367777889999999999999999987 4333 46788899999999999999999


Q ss_pred             HHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018924          105 AMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQA  184 (349)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  184 (349)
                      +.|++..+.  .|+...++..+..++...|++++|...|+......+.+......+...+.+.+..+.+..+....... 
T Consensus        92 ~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  168 (259)
T d1xnfa_          92 EAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-  168 (259)
T ss_dssp             HHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred             hhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-
Confidence            999999985  45554689999999999999999999999444444445544444445555666655555555555442 


Q ss_pred             CCCCcchHHHHHHHHHhcCc----HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          185 LCYDTRIPNFLIDVYCRNGL----LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                       .++...++ ++..+.....    .+.+...+........ -...+|..+...|...|++++|.+.|+.++.
T Consensus       169 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         169 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             22222222 2333222211    2222222222222111 1234677788999999999999999999984

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.2e-09  Score=87.83  Aligned_cols=270  Identities=12%  Similarity=0.009  Sum_probs=185.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhcCCCCC-cc---HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc----chhh
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEADPNVA-LD---WVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK----VNSA  122 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~  122 (349)
                      .......+...|++++|++++++.. +.... ++   ..++..+..+|...|++++|.+.|++..+.....+    ...+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL-~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-hhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            3344566788999999999999876 32221 11   34567788999999999999999999876432221    2235


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHH-HHH--hh--ccCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CCcc
Q 018924          123 YNVILTLYGKYGKKDDVLRIWE-LYK--KA--VKVL---NNGYRNVISSLLKLDDLESAEKIFEEWESQALC----YDTR  190 (349)
Q Consensus       123 ~~~l~~~~~~~~~~~~a~~~~~-~~~--~~--~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~  190 (349)
                      +..+...+...|++..+...+. ...  ..  ....   ...+..+...+...|+++.+...+.........    ....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            6677788889999999999988 211  11  1111   124556777888999999999999888764222    2223


Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHc----Cccc--chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLK----GREI--HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSV  264 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  264 (349)
                      .+..+...+...+....+...+......    +..+  ....+..+...+...|++++|...+........  .......
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  251 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQ  251 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TTCGGGH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc--ccchHHH
Confidence            4455666777889999998888776542    1111  123456667778899999999999988764200  0011134


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHhhC----CC-C-CchhHHHHh-hhhhcC--cchHHHHHHHHh
Q 018924          265 ESLAACLDYFKDEGDIGGAENFIELLNDK----GF-I-PTDLQDKLL-DNVQNG--KSNLETLRELYG  323 (349)
Q Consensus       265 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~l~-~~~~~g--~~a~~~~~~m~~  323 (349)
                      ..+..+...+...|++++|...++.+...    +. + ....+..+. .|.+.|  ++|.+.+++..+
T Consensus       252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55667788899999999999999887642    22 2 234566677 888888  889998887644

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=3.4e-11  Score=98.55  Aligned_cols=271  Identities=7%  Similarity=-0.098  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH----------HhcCChHHHHHHHHHhhcCCCCCccH
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDR-YTYCTRLSAY----------ADASDHEGIDKILTMMEADPNVALDW   84 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~   84 (349)
                      ++.++......+..++|++++++..+.+  |+. ..|+..-..+          ...|++++|+.+++... +.+. -+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l-~~~p-k~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RVNP-KSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHCT-TCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH-HhCC-CcH
Confidence            3444444444444589999999998764  444 3454332222          23345778888888876 4333 456


Q ss_pred             HHHHHHHHHHhhcC--cHHHHHHHHHHHHHhhcCCcchhhHH-HHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924           85 VIYATVGNGYGKVG--LLDKALAMLKKSEEQIKGAKVNSAYN-VILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI  161 (349)
Q Consensus        85 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  161 (349)
                      ..|..+..++...+  ++++|...+++..+.  .|+....+. .....+...+.+++|+..++......+-+...|+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            66766766666655  478999999998875  333324543 4556777789999999988844444455667788888


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHH
Q 018924          162 SSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIH  241 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  241 (349)
                      ..+.+.|++++|...+....+.  .|+   ...+...+...+..+++...+.......+ ++...+..+...+...++++
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~  259 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSEL  259 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHH
Confidence            8888888887775555443332  111   11233344556667777777777766543 24555666667777778888


Q ss_pred             HHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          242 KAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       242 ~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +|...+.+..       ...| +...+..+..++...|+.++|.+.++.+.+.+|.....|..+.
T Consensus       260 ~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         260 ESCKELQELE-------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             HHHHHHHHHC-------TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHH-------hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            8888888876       3345 4566777788888899999999999988887765556666665

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=1.1e-10  Score=95.43  Aligned_cols=268  Identities=6%  Similarity=-0.111  Sum_probs=186.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHH---H-------HHhhcCcHHHHHHHHHHHHHhhcCCcchh
Q 018924           52 CTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVG---N-------GYGKVGLLDKALAMLKKSEEQIKGAKVNS  121 (349)
Q Consensus        52 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~-------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  121 (349)
                      ..++......+..++|++++++.. ..++ -+...|+..-   .       .+...|++++|+..++...+.  .|....
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l-~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~  108 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQIL-GANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYG  108 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHH
Confidence            333333333344589999999887 3332 2333443222   2       233455688999999998875  455546


Q ss_pred             hHHHHHHHHhhcC--CHHHHHHHHHHHHhhccCChhhHH-HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 018924          122 AYNVILTLYGKYG--KKDDVLRIWELYKKAVKVLNNGYR-NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDV  198 (349)
Q Consensus       122 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  198 (349)
                      +|..+..++...+  ++++|...++......+++...+. .....+...+.++.|...++.+.+.+ +-+...|+.+...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            8888887777765  478999998844444455555554 44567778899999999999998875 4567788889999


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcC
Q 018924          199 YCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEG  278 (349)
Q Consensus       199 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g  278 (349)
                      +.+.|++++|...+....+..  |+.   ..+...+...+..+++...+......      -.++...+..+...+...|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~------~~~~~~~~~~l~~~~~~~~  256 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLG------RAEPLFRCELSVEKSTVLQ  256 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHS------CCCCSSSCCCCHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHh------CcchhhHHHHHHHHHHHHh
Confidence            999999988877666554421  221   12233345556777788888887753      2334555666677778889


Q ss_pred             ChhhHHHHHHHHhhCCCCCchhHHHHh-hhhhcC--cchHHHHHHHHhCCCCCCcccccCCC
Q 018924          279 DIGGAENFIELLNDKGFIPTDLQDKLL-DNVQNG--KSNLETLRELYGNSLAGNEETLSGPE  337 (349)
Q Consensus       279 ~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~~~~~p~~~t~~~~l  337 (349)
                      +.++|...+.......+.+...|..+. ++.+.|  ++|++.+++..+  +.|+...|...+
T Consensus       257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L  316 (334)
T d1dcea1         257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL  316 (334)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHH
Confidence            999999999999888777777888888 998888  899999999987  578766554433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=7.9e-08  Score=76.37  Aligned_cols=195  Identities=11%  Similarity=-0.005  Sum_probs=119.8

Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhc----CCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHh---hcc---CChhhHHH
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIK----GAKVNSAYNVILTLYGKYGKKDDVLRIWELYKK---AVK---VLNNGYRN  159 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~  159 (349)
                      ....|...|++++|.+.|.+..+...    .++...+|..+..+|.+.|++++|.+.++....   ...   ....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45667888888888888888765321    222335788888888888999998888882111   111   11234555


Q ss_pred             HHHHHh-ccCCHHHHHHHHHHHHhc----CCCC-CcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccch------hhH
Q 018924          160 VISSLL-KLDDLESAEKIFEEWESQ----ALCY-DTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHV------KSW  227 (349)
Q Consensus       160 li~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~  227 (349)
                      +...|. ..|++++|.+.+.+..+.    +.++ ...++..+...|...|++++|...|+++.........      ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666663 468888888888876542    1111 1234677788888888888888888887764322111      123


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC------HHHHHHHHHHHHh--cCChhhHHHHHHHHh
Q 018924          228 YYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS------VESLAACLDYFKD--EGDIGGAENFIELLN  291 (349)
Q Consensus       228 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~ll~~~~~--~g~~~~a~~~~~~~~  291 (349)
                      ...+..+...|+++.|...+.+..       .+.|+      ......++.++..  .+.+++|...|+.+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~-------~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQ-------SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGG-------CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-------HhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            344556667888888888888876       33332      2334555555543  233556666555444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=4.6e-07  Score=71.80  Aligned_cols=201  Identities=6%  Similarity=-0.054  Sum_probs=133.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhc---CCCC-CccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc----chhh
Q 018924           51 YCTRLSAYADASDHEGIDKILTMMEA---DPNV-ALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAK----VNSA  122 (349)
Q Consensus        51 ~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~  122 (349)
                      |......|...+++++|.+.|.+...   +.+- .....+|..+..+|.+.|++++|.+.+++..+.....+    ...+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            55556778888999999988887641   1112 12346788889999999999999999988765322221    1245


Q ss_pred             HHHHHHHHhh-cCCHHHHHHHHHHHHh---h--ccC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcc-----
Q 018924          123 YNVILTLYGK-YGKKDDVLRIWELYKK---A--VKV-LNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTR-----  190 (349)
Q Consensus       123 ~~~l~~~~~~-~~~~~~a~~~~~~~~~---~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----  190 (349)
                      +..+...|.. .|++++|++.++....   .  .++ -..++..+...+...|++++|...|+++..........     
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            6666666644 6999999999982211   1  111 12457888999999999999999999988753222211     


Q ss_pred             -hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc-cc---hhhHHHHHHHHhc--CCCHHHHHHHHHHHH
Q 018924          191 -IPNFLIDVYCRNGLLEKAENLVNHEKLKGRE-IH---VKSWYYLATGYRQ--NSQIHKAVEAMKKVL  251 (349)
Q Consensus       191 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~~~~~~a~~~~~~~~  251 (349)
                       .+...+..+...|+++.|...+++..+..+. ++   ......++.++..  .+.+++|+..|+++.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence             2334555667789999999999988764321 11   2345566676655  345788888776643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.1e-07  Score=68.86  Aligned_cols=120  Identities=18%  Similarity=0.095  Sum_probs=70.2

Q ss_pred             HHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCH
Q 018924           57 AYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKK  136 (349)
Q Consensus        57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  136 (349)
                      .+...|+++.|++.|+++. .    |+..+|..+..+|...|++++|++.|++..+.  .|+...+|..+..++.+.|++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~-~----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ-D----PHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS-S----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHHhcC-C----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccH
Confidence            4456677777776666543 2    44556666777777777777777777776663  344445677777777777777


Q ss_pred             HHHHHHHHHHHhhccCC----------------hhhHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018924          137 DDVLRIWELYKKAVKVL----------------NNGYRNVISSLLKLDDLESAEKIFEEWESQ  183 (349)
Q Consensus       137 ~~a~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  183 (349)
                      ++|+..|+......+.+                ..++..+..++.+.|++++|.+.+....+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77777666222211111                122334455555666666666666555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.6e-07  Score=66.92  Aligned_cols=125  Identities=14%  Similarity=0.007  Sum_probs=92.3

Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCH
Q 018924           91 GNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDL  170 (349)
Q Consensus        91 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  170 (349)
                      ...+...|+++.|++.|+++    ..++. .+|..+..+|...|++++|++.|+....-.+.+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~-~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHS-RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence            55678889999999988764    23444 77888999999999999999999955555556677888888899999999


Q ss_pred             HHHHHHHHHHHhcCCCCC----------------cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcc
Q 018924          171 ESAEKIFEEWESQALCYD----------------TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGRE  221 (349)
Q Consensus       171 ~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  221 (349)
                      ++|.+.|++..... +.+                ..++..+..++.+.|++++|.+.+.......+.
T Consensus        87 ~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          87 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999888876531 111                123445666777888888888888777764433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=6.2e-08  Score=72.35  Aligned_cols=102  Identities=9%  Similarity=-0.024  Sum_probs=82.0

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      .|+...+......+.+.|++++|+..|.+.+.... -+...|..+..+|.+.|++++|+..|++.. +.+. -+..+|..
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al-~l~p-~~~~a~~~   77 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDG-QSVKAHFF   77 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCT-TCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHH-HhCC-CcHHHHHH
Confidence            37777788888888999999999999988887653 366788888888999999999999998887 4333 35677888


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhh
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQI  114 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~  114 (349)
                      +..+|.+.|++++|+..|++..+..
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            8888999999999998888877643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-07  Score=63.78  Aligned_cols=95  Identities=11%  Similarity=-0.058  Sum_probs=45.7

Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhc
Q 018924          198 VYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDE  277 (349)
Q Consensus       198 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  277 (349)
                      .+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..+..+++.     . +.+...|..+..++...
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~-p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----K-PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHh-----c-cchhhHHHHHHHHHHHc
Confidence            344445555555555555444332 3444555555555555555555555555532     1 11344445555555555


Q ss_pred             CChhhHHHHHHHHhhCCCCCch
Q 018924          278 GDIGGAENFIELLNDKGFIPTD  299 (349)
Q Consensus       278 g~~~~a~~~~~~~~~~~~~~~~  299 (349)
                      |++++|...|+...+..|.++.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHH
Confidence            5555555555555544444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.77  E-value=2.9e-06  Score=66.03  Aligned_cols=223  Identities=12%  Similarity=0.011  Sum_probs=149.7

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhcCCCCCccHHHH
Q 018924           12 TTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYAD----ASDHEGIDKILTMMEADPNVALDWVIY   87 (349)
Q Consensus        12 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   87 (349)
                      |+..+..|...+.+.+++++|++.|++..+.|   |...+..|...|..    ..+...|...+.... ..+. |.  ..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~-~~--a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNY-SN--GC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC-HH--HH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccc-cc--hh
Confidence            45677778888889999999999999998876   55666667777765    668889999998877 5454 32  23


Q ss_pred             HHHHHHHh----hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhhHHH
Q 018924           88 ATVGNGYG----KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGK----YGKKDDVLRIWELYKKAVKVLNNGYRN  159 (349)
Q Consensus        88 ~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  159 (349)
                      ..+...+.    ...+.+.|...++...+.|..    .....+...+..    ......+...+..  .....+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~----~a~~~l~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----EGCASLGGIYHDGKVVTRDFKKAVEYFTK--ACDLNDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHH--HHHTTCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh----hHHHhhcccccCCCcccchhHHHHHHhhh--hhcccccchhhh
Confidence            33443333    256788899999888765432    233334333332    3445556555552  222345556677


Q ss_pred             HHHHHhc----cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHH
Q 018924          160 VISSLLK----LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLA  231 (349)
Q Consensus       160 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  231 (349)
                      +...+..    ..+...+...++...+.|   +......+...|..    ..+++.|..+|....+.|   ++..+..|.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            7777764    456777888888777654   44555556666655    567899999999888876   455566666


Q ss_pred             HHHhc----CCCHHHHHHHHHHHHHH
Q 018924          232 TGYRQ----NSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       232 ~~~~~----~~~~~~a~~~~~~~~~~  253 (349)
                      ..|.+    ..+.++|.++|++..+.
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            66654    34788899999998876

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.3e-07  Score=62.47  Aligned_cols=91  Identities=13%  Similarity=0.001  Sum_probs=60.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcC
Q 018924           19 MLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVG   98 (349)
Q Consensus        19 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   98 (349)
                      -...+.+.|++++|+..|.+.++.... +...|..+..++...|++++|+..++... +.+. .+...|..+..++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP-DWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHH-Hhcc-chhhHHHHHHHHHHHcc
Confidence            445566677777777777777665422 55567777777777777777777777666 4333 45566666777777777


Q ss_pred             cHHHHHHHHHHHHH
Q 018924           99 LLDKALAMLKKSEE  112 (349)
Q Consensus        99 ~~~~a~~~~~~~~~  112 (349)
                      ++++|+..|++..+
T Consensus        86 ~~~~A~~~~~~a~~   99 (117)
T d1elwa_          86 RFEEAKRTYEEGLK   99 (117)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777777777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=6.5e-07  Score=63.94  Aligned_cols=93  Identities=17%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccC
Q 018924           89 TVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLD  168 (349)
Q Consensus        89 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~  168 (349)
                      .....|.+.|++++|+..|++..+.  .|+....|..+..+|...|++++|+..|++.....+.+..+|..++.++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            3455667777777777777777764  34444677777777777777777777777444444555567777777777777


Q ss_pred             CHHHHHHHHHHHHhc
Q 018924          169 DLESAEKIFEEWESQ  183 (349)
Q Consensus       169 ~~~~a~~~~~~~~~~  183 (349)
                      ++++|...+++..+.
T Consensus        93 ~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          93 KFRAALRDYETVVKV  107 (159)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc
Confidence            777777777777764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.2e-07  Score=64.94  Aligned_cols=95  Identities=14%  Similarity=0.023  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      +......|.+.|++++|+..|.+.++.+.. +...|..+..++...|++++|...|++.. +.+. -+..+|..+..++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal-~~~p-~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAI-ELDK-KYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHH-HHcc-cchHHHHHHHHHHH
Confidence            444556677778888888888877776432 56677777777777788888887777776 3332 45567777777777


Q ss_pred             hcCcHHHHHHHHHHHHHh
Q 018924           96 KVGLLDKALAMLKKSEEQ  113 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~  113 (349)
                      ..|++++|...+++....
T Consensus        90 ~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHc
Confidence            888888888777777764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.1e-07  Score=70.88  Aligned_cols=99  Identities=12%  Similarity=-0.067  Sum_probs=47.3

Q ss_pred             ccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHH
Q 018924           82 LDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVI  161 (349)
Q Consensus        82 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li  161 (349)
                      |+...+......|.+.|++++|+..|++..+.  .|+.+.+|..+..+|.+.|++++|+..|+....-.+-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            34444444455555555555555555555442  2333345555555555555555555555522222222334455555


Q ss_pred             HHHhccCCHHHHHHHHHHHHh
Q 018924          162 SSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       162 ~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      .+|...|++++|...|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            555555555555555554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.9e-07  Score=62.24  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCc---HHHHHHHHHHHHHcCcccc-hhhHHHHHHHH
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGL---LEKAENLVNHEKLKGREIH-VKSWYYLATGY  234 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~  234 (349)
                      .+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|..+|+++...+..|+ ..+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34444555555555555555555543 3344445555555544332   2345555555554333222 12444555555


Q ss_pred             hcCCCHHHHHHHHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~  251 (349)
                      .+.|++++|++.|++++
T Consensus        83 ~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHH
Confidence            55555555555555555

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.53  E-value=5.7e-07  Score=59.95  Aligned_cols=89  Identities=16%  Similarity=0.036  Sum_probs=58.3

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHH
Q 018924          194 FLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLD  272 (349)
Q Consensus       194 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~  272 (349)
                      .+...+.+.|++++|...|++..+..+. +...|..+..++.+.|++++|+..|+++++.       .| +...+..+..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~a~~~la~   92 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc-------ccccccchHHHHH
Confidence            3455566677777777777776665533 5666666777777777777777777776643       44 4566666666


Q ss_pred             HHHhcCChhhHHHHHHHH
Q 018924          273 YFKDEGDIGGAENFIELL  290 (349)
Q Consensus       273 ~~~~~g~~~~a~~~~~~~  290 (349)
                      +|...|++++|.+.+++.
T Consensus        93 ~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          93 SHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            777777777777766654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.51  E-value=6.6e-07  Score=59.60  Aligned_cols=90  Identities=18%  Similarity=0.068  Sum_probs=60.7

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCC
Q 018924          159 NVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNS  238 (349)
Q Consensus       159 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  238 (349)
                      .+...+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...|++..+..+. +...|..+...|...|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence            34555666777777777777776653 335666677777777777777777777777765433 4566667777777777


Q ss_pred             CHHHHHHHHHHH
Q 018924          239 QIHKAVEAMKKV  250 (349)
Q Consensus       239 ~~~~a~~~~~~~  250 (349)
                      ++++|.+.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            777777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.9e-07  Score=60.06  Aligned_cols=103  Identities=13%  Similarity=0.006  Sum_probs=82.5

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcccccCCCC-HHHHH
Q 018924          193 NFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ---IHKAVEAMKKVLAAYQTLVKWKPS-VESLA  268 (349)
Q Consensus       193 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~  268 (349)
                      ..++..+...+++++|.+.|++....++. ++.++..+..++.+.++   +++|+.+|++++..     ...|+ ...+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----cCCchHHHHHH
Confidence            45788888999999999999999997654 77888889999987655   45699999998853     22233 24677


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCCchhH
Q 018924          269 ACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQ  301 (349)
Q Consensus       269 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  301 (349)
                      .+..+|.+.|++++|.+.|+.+.+..|.+....
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence            888999999999999999999999877665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=9.6e-06  Score=58.30  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=85.3

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHh
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYR  235 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  235 (349)
                      .+......+.+.|++++|...|.+..+.- +.+.....             .-......       ....+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~~-------------~~~~~~~~-------~~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSN-------------EEAQKAQA-------LRLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCS-------------HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccch-------------HHHhhhch-------hHHHHHHHHHHHHH
Confidence            34555667777788888888887776531 11111000             00000011       11235677888899


Q ss_pred             cCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hhhh
Q 018924          236 QNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DNVQ  309 (349)
Q Consensus       236 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~  309 (349)
                      +.|++++|+..++..+..       .| +...+..+..+|...|++++|...|+.+.+..|.+......+. ...+
T Consensus        74 k~~~~~~A~~~~~~al~~-------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALEL-------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhc-------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999864       56 6788888889999999999999999999888877776666555 4433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.4e-06  Score=56.51  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCccc-c-----hhhHHHH
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREI-H-----VKSWYYL  230 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l  230 (349)
                      +..+...+...|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|...++++.+..+.. .     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3455667777888888888888877764 4456677778888888888888888888776532210 0     1356667


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHH
Q 018924          231 ATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       231 i~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      ...+...+++++|++.|.+.+..
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            77777888888888888888754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.9e-05  Score=55.64  Aligned_cols=61  Identities=11%  Similarity=-0.103  Sum_probs=33.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          157 YRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       157 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      |+.+..+|.+.|++++|...++..++.. +.+...+..+..+|...|++++|...|+...+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4445555555555555555555555543 234445555555555555555555555555553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8.8e-06  Score=55.40  Aligned_cols=101  Identities=12%  Similarity=-0.007  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAAC  270 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l  270 (349)
                      +..+...+.+.|++++|...|.+.++.++. +...|..+..+|.+.|++++|++.++++++..+......+. ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            445778899999999999999999997654 68889999999999999999999999998652222121121 3567778


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhC
Q 018924          271 LDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       271 l~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      ...+...+++++|...|+.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            88889999999999999887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.21  E-value=1.8e-05  Score=56.71  Aligned_cols=73  Identities=16%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924          226 SWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL  304 (349)
Q Consensus       226 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  304 (349)
                      .|+.+..+|.+.|++++|+..++.++..       .| +...|..+..++...|++++|...|+.+....|.+......+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l-------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGL-------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhc-------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4556777778888888888888888753       34 567777777888888888888888888887777666665555


Q ss_pred             h
Q 018924          305 L  305 (349)
Q Consensus       305 ~  305 (349)
                      -
T Consensus       139 ~  139 (168)
T d1kt1a1         139 F  139 (168)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=2.7e-05  Score=56.21  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCCHHH
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPSVES  266 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  266 (349)
                      ..+..+...+...|++++|...++++....+. +...|..++.+|...|+..+|++.|+++........|+.|...+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            35667888888899999999999998887654 77788999999999999999999998886644444588888765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.21  E-value=2.5e-05  Score=54.97  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHH
Q 018924           13 TVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGN   92 (349)
Q Consensus        13 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~   92 (349)
                      ...+..-...+.+.|++.+|+..|.+.+..-.....             .. +..  ...... .    ....+|+.+..
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~-~~~--~~~~~~-~----~~~~~~~Nla~   75 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WD-DQI--LLDKKK-N----IEISCNLNLAT   75 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CC-CHH--HHHHHH-H----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hh-hHH--HHHhhh-h----HHHHHHhhHHH
Confidence            345566667888899999999999888763111000             00 000  000000 0    11235556666


Q ss_pred             HHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHH
Q 018924           93 GYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWEL  145 (349)
Q Consensus        93 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  145 (349)
                      +|.+.|++++|++.+++..+.  .|+...+|..+..++...|++++|+..|+.
T Consensus        76 ~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~  126 (153)
T d2fbna1          76 CYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK  126 (153)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHH
Confidence            777777777777777776653  344446677777777777777777777763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.19  E-value=0.00063  Score=52.27  Aligned_cols=224  Identities=13%  Similarity=0.001  Sum_probs=121.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhcCCcchhh
Q 018924           47 DRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGK----VGLLDKALAMLKKSEEQIKGAKVNSA  122 (349)
Q Consensus        47 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  122 (349)
                      |+..+..|...+...+++++|+++|++.. +.|.   ...+..|...|..    ..+...|...++.....+   .. .+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa-~~g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~-~a   72 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-DLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS-NG   72 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-HH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCC---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---cc-ch
Confidence            34455566666667788888888888776 4442   3344445555554    556777777777765532   11 34


Q ss_pred             HHHHHHHHhh----cCCHHHHHHHHHH-HHhhccCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHhcCCCCCcchHH
Q 018924          123 YNVILTLYGK----YGKKDDVLRIWEL-YKKAVKVLNNGYRNVISSLL----KLDDLESAEKIFEEWESQALCYDTRIPN  193 (349)
Q Consensus       123 ~~~l~~~~~~----~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~  193 (349)
                      ...+...+..    ..+.+.|...++. ...+..   .....+...+.    .......+...+......   .+...+.
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~  146 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCT  146 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhh
Confidence            4444444432    4566677777762 222211   11222222222    233455566666655543   2444555


Q ss_pred             HHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccccCCCCHH
Q 018924          194 FLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLAAYQTLVKWKPSVE  265 (349)
Q Consensus       194 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  265 (349)
                      .|...|..    ..+...+..+++...+.|   +......+...|..    ..++++|..+|++..+.     |   ++.
T Consensus       147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-----g---~~~  215 (265)
T d1ouva_         147 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-----E---NGG  215 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-----T---CHH
T ss_pred             hhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-----c---CHH
Confidence            56666654    344566666666666543   34444444444443    45677777777777654     3   333


Q ss_pred             HHHHHHHHHHh----cCChhhHHHHHHHHhhCCC
Q 018924          266 SLAACLDYFKD----EGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       266 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~  295 (349)
                      .+..|...|.+    ..+.++|.+.|+.....|.
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            44444444443    2366677777776665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.18  E-value=5.7e-05  Score=53.95  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=43.6

Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHhhcCCc-------------chhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCCh
Q 018924           88 ATVGNGYGKVGLLDKALAMLKKSEEQIKGAK-------------VNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLN  154 (349)
Q Consensus        88 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (349)
                      ......+.+.|++++|...|++....-....             ...+|+.+..+|.+.|++++|+..++......+.+.
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH
Confidence            3344555555566666555555443210000             002334444445555555555555553333333344


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          155 NGYRNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       155 ~~~~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      ..|..+..++...|++++|...|..+.+
T Consensus        99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          99 KGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4445555555555555555555555544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=3.3e-05  Score=55.31  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      +......+...|++++|+..|.+.++..            .............    .+.     +.....|..+..++.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~----~~~-----~~~~~~~~nla~~~~   88 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA----KLQ-----PVALSCVLNIGACKL   88 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG----GGH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH----HhC-----hhhHHHHHHHHHHHH
Confidence            4555667788899999988888775420            0000000000000    000     022334455556666


Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +.|++++|+..+++..+.  .|+...+|..+..++...|++++|+..|+
T Consensus        89 ~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~  135 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLK  135 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence            666666666666666552  34443566666666666666666666666

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=3.9e-05  Score=54.93  Aligned_cols=62  Identities=13%  Similarity=-0.072  Sum_probs=35.0

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 018924          156 GYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLK  218 (349)
Q Consensus       156 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  218 (349)
                      .|..+..++.+.|++++|+..+..+++.. +.+...|..+..+|...|++++|...|+...+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34445555556666666666666655543 334445555666666666666666666665554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=3.6e-05  Score=54.05  Aligned_cols=59  Identities=20%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          192 PNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       192 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      |+.+..+|.+.|++++|...++...+.++. +..+|..+..++...|++++|...|++.+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            344444455555555555555555443322 34445555555555555555555555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2e-06  Score=73.52  Aligned_cols=134  Identities=7%  Similarity=-0.103  Sum_probs=71.2

Q ss_pred             cCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHH
Q 018924           97 VGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKI  176 (349)
Q Consensus        97 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  176 (349)
                      .+.++.++..+....+  ..|+....+..+...+.+.|+.+.|...++....- .| ..++..+...+...|++++|...
T Consensus        99 ~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~-~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY-IC-QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHTC---------------------------------CCHHHHH-HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence            4455555555544433  23444357778888888888888888777621111 11 24667778888888889999998


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          177 FEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      |.+..+.. +.+...|+.|...+...|+..+|...|.+...... |...++..|...|.+
T Consensus       175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Confidence            88888764 44567888888888888998888888888877543 466677777766644

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=3.2e-05  Score=55.85  Aligned_cols=101  Identities=12%  Similarity=0.048  Sum_probs=72.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcccc--cCCC--------------CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 018924          232 TGYRQNSQIHKAVEAMKKVLAAYQTLV--KWKP--------------SVESLAACLDYFKDEGDIGGAENFIELLNDKGF  295 (349)
Q Consensus       232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~p--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  295 (349)
                      ......|++++|.+.|...+..+....  ++..              ....+..+..++...|++++|...++.+....|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            345666777777777777664311000  0000              113456677788899999999999999999888


Q ss_pred             CCchhHHHHh-hhhhcC--cchHHHHHHHHh-----CCCCCCccc
Q 018924          296 IPTDLQDKLL-DNVQNG--KSNLETLRELYG-----NSLAGNEET  332 (349)
Q Consensus       296 ~~~~~~~~l~-~~~~~g--~~a~~~~~~m~~-----~~~~p~~~t  332 (349)
                      .+...|..++ ++.+.|  .+|++.|+++.+     .|+.|+..+
T Consensus        99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            8889999999 999999  889999988743     588888654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.5e-05  Score=66.60  Aligned_cols=135  Identities=7%  Similarity=-0.112  Sum_probs=80.4

Q ss_pred             cCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHH
Q 018924           61 ASDHEGIDKILTMMEADPNVALDWVIYATVGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVL  140 (349)
Q Consensus        61 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  140 (349)
                      .+.++.++..+.... ...+ ++...+..+...+.+.|+.+.|...++.....    +...++..+...+...|++++|.
T Consensus        99 ~~~Y~~ai~~l~~~~-~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~LG~l~~~~~~~~~A~  172 (497)
T d1ya0a1          99 SGFYTQLLQELCTVF-NVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----ICQHCLVHLGDIARYRNQTSQAE  172 (497)
T ss_dssp             HHHHHHHHHHHTC---------------------------------CCHHHHH----HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcccHHHHH
Confidence            344555554444333 2222 45566777888889999999999888776542    22257888999999999999999


Q ss_pred             HHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 018924          141 RIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN  202 (349)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  202 (349)
                      ..|+......|.+...|+.+...+...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus       173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            99996666666677899999999999999999999999998865 56677788888777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.90  E-value=6.9e-06  Score=63.48  Aligned_cols=131  Identities=11%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHH
Q 018924          164 LLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKA  243 (349)
Q Consensus       164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  243 (349)
                      ..+.|++++|...+++.++.. +.|...+..+...|+..|++++|...|+...+..+. +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            456789999999999988875 567788889999999999999999999998885532 233444343333222222222


Q ss_pred             HHHHHHHHHHhcccccCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHH
Q 018924          244 VEAMKKVLAAYQTLVKWKP-SVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQD  302 (349)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  302 (349)
                      ..-.....      .-..| +...+......+...|+.++|.+.++.+.+..+.....++
T Consensus        84 ~~~~~~~~------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          84 AQGAATAK------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TTSCCCEE------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHhhhhh------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            11111100      01122 2333444455677889999999999888877554443333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=4e-05  Score=53.24  Aligned_cols=112  Identities=10%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----------CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc
Q 018924          167 LDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRN----------GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ  236 (349)
Q Consensus       167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  236 (349)
                      .+.+++|...|+...+.. +.+..++..+..+|...          +.+++|...|++..+.++. +..+|..+..+|..
T Consensus        10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~   87 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHH
Confidence            344556666666665543 33444555555555432          3456777777777765543 55566667666655


Q ss_pred             CC-----------CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          237 NS-----------QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       237 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                      .|           .+++|.+.|++++       .+.|+...+..-+..+      ..|.+++.++.+.
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal-------~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~  142 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAV-------DEQPDNTHYLKSLEMT------AKAPQLHAEAYKQ  142 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHH-------HHCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             cccchhhHHHHHHhHHHhhhhhhccc-------ccCCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            43           3577888888887       4478766665544433      3555566555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=0.0042  Score=49.09  Aligned_cols=262  Identities=8%  Similarity=0.025  Sum_probs=129.1

Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHH
Q 018924           10 ARTTVVYNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYAT   89 (349)
Q Consensus        10 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   89 (349)
                      .||..--..+.+.|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.++..+..       +..+|..
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~   74 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE   74 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHH
Confidence            3555555667777888888888888886543         24556777778888888777766542       2346666


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCC
Q 018924           90 VGNGYGKVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDD  169 (349)
Q Consensus        90 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (349)
                      +...+.+.....-+.     +......... .....++..|-..|.+++...+++.....-.++...++.++..|++.+.
T Consensus        75 ~~~~l~~~~e~~la~-----i~~~~~~~~~-d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_          75 VCFACVDGKEFRLAQ-----MCGLHIVVHA-DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHHTTCHHHHH-----HTTTTTTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCcHHHHHH-----HHHHHhhcCH-HHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh
Confidence            777777666554321     1111122233 3456677777788888887777773322234555667777777776542


Q ss_pred             HHHHHHHHHHHHhcCCCCC----------cchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCC
Q 018924          170 LESAEKIFEEWESQALCYD----------TRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQ  239 (349)
Q Consensus       170 ~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  239 (349)
                       ++..+.+...   ....|          ...|..++..|.+.|+++.|..+.   .+.  .++..-....+..+.+..+
T Consensus       149 -~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N  219 (336)
T d1b89a_         149 -QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN  219 (336)
T ss_dssp             -HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSS
T ss_pred             -HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCC
Confidence             3333332221   11111          112333444444444444443332   111  1223333444555555555


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCHH-----------HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh-hh
Q 018924          240 IHKAVEAMKKVLAAYQTLVKWKPSVE-----------SLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL-DN  307 (349)
Q Consensus       240 ~~~a~~~~~~~~~~~~~~~~~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~  307 (349)
                      .+...++....++.       .|+..           ....++..+.+.+++.....+++.....+  +....+++. .|
T Consensus       220 ~e~~~~~i~~yL~~-------~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~ly  290 (336)
T d1b89a_         220 VELYYRAIQFYLEF-------KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLF  290 (336)
T ss_dssp             THHHHHHHHHHHHH-------CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHc-------CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHH
Confidence            55555555444432       22211           11334445556666666666666655543  334566666 77


Q ss_pred             hhcC
Q 018924          308 VQNG  311 (349)
Q Consensus       308 ~~~g  311 (349)
                      ...+
T Consensus       291 ie~~  294 (336)
T d1b89a_         291 ITEE  294 (336)
T ss_dssp             HHTT
T ss_pred             hCcc
Confidence            6665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00015  Score=46.01  Aligned_cols=76  Identities=13%  Similarity=-0.044  Sum_probs=39.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHH
Q 018924          229 YLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-VESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKL  304 (349)
Q Consensus       229 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  304 (349)
                      .+...+.+.|++++|+..|+++++..+......++ ..++..+..++.+.|++++|...++++.+..|.+...++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            44555555666666666666655442222222222 34555556666666666666666666665555554444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=0.00012  Score=50.80  Aligned_cols=36  Identities=3%  Similarity=-0.073  Sum_probs=19.0

Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhc
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKY  133 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  133 (349)
                      +.+.+++|++.|+...+.  .|+...++..+..++...
T Consensus         9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~   44 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLEL   44 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHh
Confidence            344556666666666553  344434555555555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.77  E-value=3e-05  Score=59.78  Aligned_cols=51  Identities=18%  Similarity=0.031  Sum_probs=23.9

Q ss_pred             hcCCHHHHHHHHHHHHhhccCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018924          132 KYGKKDDVLRIWELYKKAVKVLNNGYRNVISSLLKLDDLESAEKIFEEWES  182 (349)
Q Consensus       132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  182 (349)
                      +.|++++|+..++......|.|...+..+...++..|++++|...++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344445555544433333334444444455555555555555555544444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.76  E-value=0.00033  Score=49.10  Aligned_cols=78  Identities=13%  Similarity=0.009  Sum_probs=48.6

Q ss_pred             chHHHHHHHHHhcCcHHHHHHHHHHHHHcC-----ccc-----chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhccccc
Q 018924          190 RIPNFLIDVYCRNGLLEKAENLVNHEKLKG-----REI-----HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVK  259 (349)
Q Consensus       190 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  259 (349)
                      ..|+.+..+|...|++++|...+++..+..     ..+     ....++.+..+|...|++++|++.|+++++..+...+
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            346667777777777777777776655321     011     1224566778888888888888888888766444444


Q ss_pred             CCCCHHHH
Q 018924          260 WKPSVESL  267 (349)
Q Consensus       260 ~~p~~~~~  267 (349)
                      -.+....+
T Consensus       136 ~~~~~~~~  143 (156)
T d2hr2a1         136 ETPGKERM  143 (156)
T ss_dssp             CCTTHHHH
T ss_pred             hHHHHHHH
Confidence            44444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.71  E-value=0.00045  Score=48.37  Aligned_cols=98  Identities=9%  Similarity=-0.024  Sum_probs=69.0

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCcc-c----------chhhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccccCCCC-
Q 018924          196 IDVYCRNGLLEKAENLVNHEKLKGRE-I----------HVKSWYYLATGYRQNSQIHKAVEAMKKVLAAYQTLVKWKPS-  263 (349)
Q Consensus       196 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-  263 (349)
                      ...+.+.|++++|...|++..+.... |          ....|+.+..+|...|++++|.+.+++.+...+......++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33445567777777777766642111 1          13568889999999999999999999998753332233333 


Q ss_pred             ----HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 018924          264 ----VESLAACLDYFKDEGDIGGAENFIELLNDK  293 (349)
Q Consensus       264 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  293 (349)
                          ...+..+..+|...|++++|...|++..+.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                235677788999999999999999987654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=0.011  Score=46.54  Aligned_cols=241  Identities=12%  Similarity=0.080  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q 018924           16 YNSMLKLYYKTGNFEKLDSLMHEMEENGITYDRYTYCTRLSAYADASDHEGIDKILTMMEADPNVALDWVIYATVGNGYG   95 (349)
Q Consensus        16 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~   95 (349)
                      |..++..+.+.++++.|.+++.+.      -+..+|..+...|.+......+     ++. ......+......++..|-
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~-~~~~~~~~d~l~~~v~~ye  110 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMC-GLHIVVHADELEELINYYQ  110 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHT-TTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHH-HHHhhcCHHHHHHHHHHHH
Confidence            445777788888888887776543      1567888899998887776543     222 2223345555567999999


Q ss_pred             hcCcHHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHHHHHhhccC--------ChhhHHHHHHHHhcc
Q 018924           96 KVGLLDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWELYKKAVKV--------LNNGYRNVISSLLKL  167 (349)
Q Consensus        96 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~li~~~~~~  167 (349)
                      ..|.+++...+++....  ..+.....++.++..|++.+ .++..+.++.......+        ....|.-++-.|.+.
T Consensus       111 ~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         111 DRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            99999999999998754  23333367889999988865 34444444421111111        111233444444455


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHH-------------HHHH
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYL-------------ATGY  234 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------i~~~  234 (349)
                      |+++.|..+.-   +  -.++..-...++..+.+..+++...++.....+..  |+  ..+.+             +.-+
T Consensus       188 ~~~~~A~~~~i---~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~--p~--~i~~lL~~v~~~~d~~r~V~~~  258 (336)
T d1b89a_         188 EEYDNAIITMM---N--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PL--LLNDLLMVLSPRLDHTRAVNYF  258 (336)
T ss_dssp             TCHHHHHHHHH---H--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--GG--GHHHHHHHHGGGCCHHHHHHHH
T ss_pred             CCHHHHHHHHH---H--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcC--HH--HHHHHHHHhccCCCHHHHHHHH
Confidence            55554443321   2  24455555667777888888887777777665532  32  22334             4444


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 018924          235 RQNSQIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIE  288 (349)
Q Consensus       235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  288 (349)
                      .+.+++.-...++......     +   +....+.+...|...+|++.-+...+
T Consensus       259 ~k~~~l~li~p~Le~v~~~-----n---~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         259 SKVKQLPLVKPYLRSVQNH-----N---NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             HHTTCTTTTHHHHHHHHTT-----C---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHc-----C---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            4555555555555554332     2   34678888889999998766555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0035  Score=39.35  Aligned_cols=27  Identities=33%  Similarity=0.290  Sum_probs=12.0

Q ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 018924           86 IYATVGNGYGKVGLLDKALAMLKKSEE  112 (349)
Q Consensus        86 ~~~~li~~~~~~g~~~~a~~~~~~~~~  112 (349)
                      +++.|..++.+.|++++|++.+++..+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            334444444444444444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.00  E-value=0.1  Score=34.51  Aligned_cols=47  Identities=13%  Similarity=0.057  Sum_probs=21.0

Q ss_pred             CcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCCHHHHHHHHHHHHH
Q 018924          203 GLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQIHKAVEAMKKVLA  252 (349)
Q Consensus       203 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~  252 (349)
                      .+.++|..++++..+.|   ++.....|...|..    ..+.++|.++|++..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~   87 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG   87 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence            34455555555554443   22233333333322    2345555555555554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.97  E-value=0.11  Score=34.43  Aligned_cols=80  Identities=14%  Similarity=0.002  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhc----CCC
Q 018924          168 DDLESAEKIFEEWESQALCYDTRIPNFLIDVYCR----NGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQ----NSQ  239 (349)
Q Consensus       168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~  239 (349)
                      .+.++|.+++++..+.|   +......|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34455555555554443   22233333333332    234566666666666554   23333334444433    345


Q ss_pred             HHHHHHHHHHHHHH
Q 018924          240 IHKAVEAMKKVLAA  253 (349)
Q Consensus       240 ~~~a~~~~~~~~~~  253 (349)
                      .++|.++|++..+.
T Consensus       111 ~~~A~~~~~~Aa~~  124 (133)
T d1klxa_         111 EKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            66666666666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.02  E-value=0.23  Score=32.07  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHhcCcHHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 018924          191 IPNFLIDVYCRNGLLEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLAA  253 (349)
Q Consensus       191 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  253 (349)
                      .++.-++.+...|+-+.-.++++.+.+. -+|++...-.+..+|-+.|...++-++++++.+.
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            3344444445555555555555544432 2234444444555555555555555555555444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.56  E-value=0.24  Score=30.22  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCchhHHHHh
Q 018924          239 QIHKAVEAMKKVLAAYQTLVKWKPSVESLAACLDYFKDEGDIGGAENFIELLNDKGFIPTDLQDKLL  305 (349)
Q Consensus       239 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  305 (349)
                      +.-++.+-++.+...     .+.|.+....+.+++|.+.+|+..|.++|+.++.+.-++...|..++
T Consensus        21 D~we~rrgmN~l~~~-----DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGY-----DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTS-----SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhcc-----ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            444555566665554     67777777777788888888888888887777765433455565554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.38  Score=31.09  Aligned_cols=47  Identities=11%  Similarity=0.142  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018924          205 LEKAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVL  251 (349)
Q Consensus       205 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  251 (349)
                      .+++..+|+.+.+.++.-....+-.|.-+|.+.|++++|.+.++.++
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34555555555543321112333444555555556666665555555

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.41  Score=30.93  Aligned_cols=44  Identities=9%  Similarity=0.016  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHhhcCCcchhhHHHHHHHHhhcCCHHHHHHHHH
Q 018924          100 LDKALAMLKKSEEQIKGAKVNSAYNVILTLYGKYGKKDDVLRIWE  144 (349)
Q Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  144 (349)
                      +++++.+|+++....+.... ..+-.|.-+|.+.|+++.|.+.++
T Consensus        54 ~~~gI~lLe~~~~~~p~~~r-d~lY~Lav~yyklgdy~~A~~~~~   97 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRR-ECLYYLTIGCYKLGEYSMAKRYVD   97 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455555555443211111 234444445555555555555555

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.85  E-value=0.46  Score=30.65  Aligned_cols=59  Identities=19%  Similarity=0.103  Sum_probs=27.0

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHcCc
Q 018924          161 ISSLLKLDDLESAEKIFEEWESQALCYDTRIPNFLIDVYCRNGLLEKAENLVNHEKLKGR  220 (349)
Q Consensus       161 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  220 (349)
                      ++....+|.-++-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|.
T Consensus        93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334444444444444444444432 44444444444555555555555555555444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.31  E-value=0.54  Score=28.64  Aligned_cols=46  Identities=13%  Similarity=-0.078  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHcCcccchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 018924          207 KAENLVNHEKLKGREIHVKSWYYLATGYRQNSQIHKAVEAMKKVLA  252 (349)
Q Consensus       207 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  252 (349)
                      ++.+-++.+......|++....+.+.+|-+.+++..|.++|+..+.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444555555555666666666666666666666666666666654