Citrus Sinensis ID: 018997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccEEEccccccccccccccEHcHHccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHcccccccccccccEcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHcccHHcEEEEcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mksfsfgsnsnspksftaypscdfdiesgtikrtrrskklplhplkmIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGyrkfnvgsdnypfvkLKNLVMVAGHsiytssscgkvdkedswflepyqqhpgqaASFVAHIQEGVEIVAKDDKALLLFsggetrkdagprseaqSYWTVAEskgwfgneeSVRWRAMTEEHARDSFENLLFSVCRFreltgtyphnitvvsydfkeerfthlhrsaigfpesrffysgtpgsttskEAAMRGEALVRSqfqedpygclgslwrkklgrdpfhrtipypngcpeieglfrycgtapysgslpwaq
Flexible Loop (DISEMBL)
mksfsfgsnsnspksftaypscdfdiesgtikrtrrskklplhplkMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSggetrkdagprseaqsywtvaeskgwfgNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHrsaigfpesrffYSGTPGSTTSKEAAMRGEALVRSqfqedpygcLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTApysgslpwaq
Low Complexity Region (SEG)
MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ
Disordered region (IsUnstruct)
*********************CDFDI*************LPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFS***************SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYS********************SQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYS*******
Disordered Region (DISOPRED)
*****************AYPSCDFDI********************MIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTI************PFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGE************SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTT******RGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA*
Disordered Region (DISEMBL)
*************KSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGET***********SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ
Disordered Region (DISPRO)
*******************PSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPW**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
P87055	311	Uncharacterized protein C	yes	no	0.671	0.749	0.431	8e-52
Q08634	303	Uncharacterized protein Y	yes	no	0.625	0.716	0.296	1e-22

>sp|P87055|YDJ7_SCHPO Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A10.07 PE=4 SV=1

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 15/248 (6%)

Query: 105 PFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKD 164
           P   L +L++VAGH+++   S    D +  W LEPYQ+  G+   F  H++ G++++++D
Sbjct: 72  PLKNLTHLIIVAGHAVWLGGSTNGED-DSEWILEPYQK--GEGKVFAQHVRSGLDLLSQD 128

Query: 165 DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLF 224
           D +LL+FSGG+TR  AGP SEAQSY++++       ++E +  R  TEE ARDS EN+LF
Sbjct: 129 DSSLLVFSGGQTRNGAGPSSEAQSYYSLSMQ---INSDEGLAARRTTEEFARDSLENVLF 185

Query: 225 SVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTP---GSTTSKEA 281
           SV RF E+T  YP  ITVVS+DFK +RF +LHR AI FPE +F + G     G + +   
Sbjct: 186 SVARFYEVTSRYPQKITVVSFDFKRDRFLNLHRKAIKFPEHKFHFVGIDPEGGVSDATRE 245

Query: 282 AMRGEALVRSQFQEDPYGCLGSLW-RKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAP-- 338
           A R  A++   F EDPY C   L  +K++ R+PF R   Y   CPE+  L +YC + P  
Sbjct: 246 AERKNAII--PFTEDPYACSNPLLVKKRMERNPFRRQHSYLITCPELIPLLQYCPSDPSK 303

Query: 339 -YSGSLPW 345
            ++G LPW
Sbjct: 304 FFNGKLPW 311

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08634|YO238_YEAST Uncharacterized protein YOR238W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR238W PE=1 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 126/277 (45%), Gaps = 60/277 (21%)

Query: 112 LVMVAGHSIYTSSS--------CGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAK 163
           L++V  HSI+ SSS         G++   + W L P+Q       +F+ H    ++++ +
Sbjct: 7   LILVPCHSIWKSSSHPSDNSVNLGQL--PEYWHLAPFQYEGNDHLAFIKHGLTAIKLLLQ 64

Query: 164 D-DKALLLFSGGETRKDAGPRSEAQSYWTVAE------------SKGWFGNEESVRWRAM 210
             D A ++FSG +T+K+AG  SEAQSY+ + E                F NE  +  + +
Sbjct: 65  RFDTATVIFSGSQTKKEAGAISEAQSYYFLFEKLIRYVMSNDNIDVPNFDNELRLLLKEV 124

Query: 211 ---------------------TEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKE 249
                                TEE + DSF+NL++S+ RF E+   +P  IT++ + FK 
Sbjct: 125 KNLLSSQNVNVDELFYGGSITTEEFSLDSFDNLIYSIYRFEEVNKKFPQKITIIGFAFKM 184

Query: 250 ERFTHLHRSAIGFPESRFFYSGT---PGSTTSKEAAMRGEALVR-------SQFQEDPYG 299
            RF   H  AI +P+S   Y G    P +    + +   + LV+       S F  D Y 
Sbjct: 185 PRFISCHAKAIDYPQSNITYIGIDPKPANYNQTQLSKYYDDLVQMEDKNALSLFSSDWYA 244

Query: 300 CLGSLWRKKLGRDPFHRTIPYPNG--CPE----IEGL 330
               L  KK  R+PF+RT PY     C E    IEG+
Sbjct: 245 TKDRLLTKKRSRNPFNRTAPYAQNIFCKENGKRIEGI 281

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
255570386	341	conserved hypothetical protein [Ricinus	0.971	0.988	0.789	1e-162
225457745	345	PREDICTED: uncharacterized protein C57A1	0.991	0.997	0.748	1e-156
147783585	338	hypothetical protein VITISV_031664 [Viti	0.959	0.985	0.756	1e-154
356552787	347	PREDICTED: uncharacterized protein C57A1	0.994	0.994	0.716	1e-149
356546577	347	PREDICTED: uncharacterized protein C57A1	0.994	0.994	0.719	1e-149
297845116	341	hypothetical protein ARALYDRAFT_472372 [	0.971	0.988	0.718	1e-143
449443820	345	PREDICTED: uncharacterized protein C57A1	0.988	0.994	0.702	1e-141
224062934	299	predicted protein [Populus trichocarpa]	0.861	1.0	0.793	1e-141
15218978	342	uncharacterized protein [Arabidopsis tha	0.976	0.991	0.704	1e-139
28393587	342	unknown protein [Arabidopsis thaliana]	0.976	0.991	0.702	1e-138

>gi|255570386|ref|XP_002526152.1| conserved hypothetical protein [Ricinus communis] gi|223534529|gb|EEF36228.1| conserved hypothetical protein [Ricinus communis]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/337 (78%), Positives = 296/337 (87%)

Query: 10  SNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCI 69
           +NSPKSF AYP  DFD+ESGTIKR R+SKK  L+P KM+KS ANR  YY KLHP++VF I
Sbjct: 5   ANSPKSFNAYPRGDFDLESGTIKRLRKSKKSSLNPFKMLKSLANRLQYYYKLHPLIVFII 64

Query: 70  ALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKV 129
           +LS  +++LV+L  YES Y     Y K  +  ++YPF KLKNLVMVAGHS+YTS+SCGKV
Sbjct: 65  SLSLGITILVVLALYESRYRTMNSYPKLVMAKNDYPFAKLKNLVMVAGHSVYTSNSCGKV 124

Query: 130 DKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSY 189
           DKEDSWFLE YQ+HPGQAA+F+ HIQEGV+I AKDD+ALLLFSGGETRKDAGPRSEAQSY
Sbjct: 125 DKEDSWFLESYQRHPGQAATFITHIQEGVQIAAKDDEALLLFSGGETRKDAGPRSEAQSY 184

Query: 190 WTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKE 249
           WTVAESKGWFGNEESVRWRA+TEEHARDSFENLLFSVCRFRELTG YP NITVVSYDFK+
Sbjct: 185 WTVAESKGWFGNEESVRWRALTEEHARDSFENLLFSVCRFRELTGAYPQNITVVSYDFKK 244

Query: 250 ERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKL 309
           +RF HLHRSAI FPESRFFYSGTP S+TSKEAA++GEALVR+QFQEDPYGC GSLWRKKL
Sbjct: 245 DRFAHLHRSAIDFPESRFFYSGTPASSTSKEAALKGEALVRAQFQEDPYGCRGSLWRKKL 304

Query: 310 GRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
           GRDPFHR+IPYPNGCPEIEGLFRYCG A Y GSLPW 
Sbjct: 305 GRDPFHRSIPYPNGCPEIEGLFRYCGAALYQGSLPWV 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457745|ref|XP_002262900.1| PREDICTED: uncharacterized protein C57A10.07 [Vitis vinifera] gi|302142776|emb|CBI19979.3| unnamed protein product [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 259/346 (74%), Positives = 298/346 (86%), Gaps = 2/346 (0%)

Query: 1   MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKK 60
           M   S+GS S  PKSF AYP  DFD+ESG+ K+ R+ K  P  P+KM+KS   R +YY K
Sbjct: 1   MNIHSYGSGS--PKSFHAYPRGDFDLESGSTKKARKPKSSPFQPIKMLKSLGTRIHYYYK 58

Query: 61  LHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSI 120
           LHP++VF I+LSF ++VL+IL  YES +     Y+K ++G ++YPF KL+NLVMVAGHS+
Sbjct: 59  LHPLVVFFISLSFGLTVLIILSVYESQFRAMSNYQKLSMGYNDYPFTKLQNLVMVAGHSV 118

Query: 121 YTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDA 180
           +TSSSCGKVDKEDSWFLE YQ+HPGQAA+F+AHI+EGVEI AKDD ALLLFSGGETRKDA
Sbjct: 119 FTSSSCGKVDKEDSWFLESYQKHPGQAATFLAHIKEGVEIAAKDDGALLLFSGGETRKDA 178

Query: 181 GPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNI 240
           GPRSEAQSYW VAES+GWFG +E+VRW+A+TEEHARDSFENLLFSVCRFRELTG+YPHNI
Sbjct: 179 GPRSEAQSYWAVAESEGWFGKQEAVRWKALTEEHARDSFENLLFSVCRFRELTGSYPHNI 238

Query: 241 TVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGC 300
           TVVSYDFKEERF +LHRSAIGFPESRFFYSGTP S+TSKE AM+GEALVR+QF +DPYGC
Sbjct: 239 TVVSYDFKEERFAYLHRSAIGFPESRFFYSGTPASSTSKEVAMKGEALVRAQFHDDPYGC 298

Query: 301 LGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
             SL RKKLGRDPFHRTIPYPNGCPEIEGLF+YCG APY GSLPWA
Sbjct: 299 SSSLRRKKLGRDPFHRTIPYPNGCPEIEGLFKYCGAAPYPGSLPWA 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783585|emb|CAN70253.1| hypothetical protein VITISV_031664 [Vitis vinifera]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 252/333 (75%), Positives = 290/333 (87%)

Query: 14  KSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSF 73
           KSF AYP  DFD+ESG+ K+ R+ K  P  P+KM+KS   R +YY KLHP++VF I+LSF
Sbjct: 5   KSFHAYPRGDFDLESGSTKKARKPKSSPFQPIKMLKSLGTRIHYYYKLHPLVVFFISLSF 64

Query: 74  AVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKED 133
            ++VL+IL  YES +     Y+K ++G ++YPF KL+NLVMVAGHS++TSSSCGKVDKED
Sbjct: 65  GLTVLIILSVYESQFRAMSNYQKLSMGYNDYPFTKLQNLVMVAGHSVFTSSSCGKVDKED 124

Query: 134 SWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVA 193
           SWFLE YQ+HPGQ A+F+AHI+EGVEI AKDD ALLLFSGGETRKDAGPRSEAQSYW VA
Sbjct: 125 SWFLESYQKHPGQVATFLAHIKEGVEIAAKDDGALLLFSGGETRKDAGPRSEAQSYWAVA 184

Query: 194 ESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFT 253
           ES+GWFG +E+VRW+A+TEEHARDSFENLLFSVCRFRELTG+YPHNITVVSYDFKEERF 
Sbjct: 185 ESEGWFGKQEAVRWKALTEEHARDSFENLLFSVCRFRELTGSYPHNITVVSYDFKEERFA 244

Query: 254 HLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDP 313
           +LHRSAIGFPESRFFYSGTP S+TSKE AM+GEALVR+QF +DPYGC  SL RKKLGRDP
Sbjct: 245 YLHRSAIGFPESRFFYSGTPASSTSKEXAMKGEALVRAQFHDDPYGCSSSLRRKKLGRDP 304

Query: 314 FHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
           FHRTIPYPNGCPEIEGLF+YCG APY GSLPWA
Sbjct: 305 FHRTIPYPNGCPEIEGLFKYCGAAPYPGSLPWA 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552787|ref|XP_003544744.1| PREDICTED: uncharacterized protein C57A10.07-like [Glycine max]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/349 (71%), Positives = 297/349 (85%), Gaps = 4/349 (1%)

Query: 1   MKSFSFGSNSNSPKSFTAYPSCDFDIESGT-IKRTRRSKKLPLHPLKMIKSFANRFNYYK 59
           M ++ FGS +  PKSF AYP  +FD+ESGT IKRTR+ K  P HPL+MIKSF NRF+++ 
Sbjct: 1   MNNYPFGSQA--PKSFPAYPKTEFDLESGTAIKRTRKPKNSPFHPLRMIKSFGNRFHHFF 58

Query: 60  KLHPILVFCIALSFAVSVLVILLAYESHYW-QTIGYRKFNVGSDNYPFVKLKNLVMVAGH 118
           KLHP++   +AL F +++ +IL  Y + Y  Q+ GY K ++G D+YPF KL+NLVMVAGH
Sbjct: 59  KLHPLMGLFLALCFVLALAMILSLYGTQYGVQSGGYVKSDMGFDDYPFSKLQNLVMVAGH 118

Query: 119 SIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRK 178
           SIYTSSSCGK++KEDSWFLE YQ++PGQAA+FV HI EG+EIVA+DD ALLLFSGGETR+
Sbjct: 119 SIYTSSSCGKIEKEDSWFLESYQKNPGQAATFVTHIHEGIEIVARDDSALLLFSGGETRR 178

Query: 179 DAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPH 238
           DAGPRSEAQSYW VA+SKGWFG EESV+WRA+TEEHARDSFENLLFSVCRFRELTGTYP 
Sbjct: 179 DAGPRSEAQSYWAVADSKGWFGKEESVKWRALTEEHARDSFENLLFSVCRFRELTGTYPQ 238

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPY 298
           NITVVSYDFKE+RF HLHRSAIGFPESRFFY+GTP ++ +K  A++GE LVR+QFQ DP+
Sbjct: 239 NITVVSYDFKEKRFAHLHRSAIGFPESRFFYTGTPATSNAKATALKGEELVRTQFQRDPF 298

Query: 299 GCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ 347
           GC GSL+ KKL RDPFHR+IPYPNGCPEIEGLF+YCG  PY G+LPWAQ
Sbjct: 299 GCRGSLYHKKLKRDPFHRSIPYPNGCPEIEGLFKYCGPTPYPGALPWAQ 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546577|ref|XP_003541701.1| PREDICTED: uncharacterized protein C57A10.07-like [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/349 (71%), Positives = 297/349 (85%), Gaps = 4/349 (1%)

Query: 1   MKSFSFGSNSNSPKSFTAYPSCDFDIESGT-IKRTRRSKKLPLHPLKMIKSFANRFNYYK 59
           M ++ FGS +  PKSF AYP  +FD+ESGT IKRTR+ K  P H L+MIKSF NRF+++ 
Sbjct: 1   MNNYPFGSQA--PKSFPAYPRTEFDLESGTAIKRTRKPKNSPFHLLRMIKSFGNRFHHFF 58

Query: 60  KLHPILVFCIALSFAVSVLVILLAYESHYW-QTIGYRKFNVGSDNYPFVKLKNLVMVAGH 118
           KLHP++   +ALSF +++++IL  Y + Y  Q+ GY K ++G D+YPF KL+NLVMVAGH
Sbjct: 59  KLHPLMGLFLALSFLLTLVMILSLYGTQYGVQSGGYVKSDMGFDDYPFSKLQNLVMVAGH 118

Query: 119 SIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRK 178
           SIYTSSSCGK++KEDSWFLE YQ++PGQAA+FV HI EG+E+VA+DD ALLLFSGGETR+
Sbjct: 119 SIYTSSSCGKIEKEDSWFLESYQKNPGQAATFVTHIHEGIEVVARDDSALLLFSGGETRR 178

Query: 179 DAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPH 238
           DAGPRSEAQSYW VA+SKGWFG EESV+WRA+TEEHARDSFENLLFSVCRFRELTGTYP 
Sbjct: 179 DAGPRSEAQSYWAVADSKGWFGKEESVKWRALTEEHARDSFENLLFSVCRFRELTGTYPQ 238

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPY 298
           NITVVSYDFKE RF HLHRSAI FPESRFFY+GTP ++ +K AA++GE LVR+QFQ DPY
Sbjct: 239 NITVVSYDFKENRFAHLHRSAISFPESRFFYAGTPATSNAKAAALKGEELVRTQFQVDPY 298

Query: 299 GCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ 347
           GC GSL+ KKL RDPFHR+IPYPNGCPEIEGLFRYCG  PY G+LPWAQ
Sbjct: 299 GCRGSLYHKKLKRDPFHRSIPYPNGCPEIEGLFRYCGPTPYPGALPWAQ 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845116|ref|XP_002890439.1| hypothetical protein ARALYDRAFT_472372 [Arabidopsis lyrata subsp. lyrata] gi|297336281|gb|EFH66698.1| hypothetical protein ARALYDRAFT_472372 [Arabidopsis lyrata subsp. lyrata]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/348 (71%), Positives = 294/348 (84%), Gaps = 11/348 (3%)

Query: 1   MKSFSFGSNSNSPKSFTAYP-SCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYK 59
           MK++SFGS+    K+F AY  S DFD+ESGTI+++R+ K       KMIKS  NR ++  
Sbjct: 1   MKNYSFGSS----KAFHAYSRSSDFDLESGTIRKSRKPKN---SFSKMIKSLGNRLHHMF 53

Query: 60  KLHPILVFCIALSFAVSVLVILLA-YESHYWQTIGY-RKFNVGSDNYPFVKLKNLVMVAG 117
           KLHPILVF   LSF ++VL++L + YE+H+  T+ Y +K ++ +D YPF  LKNLVMVAG
Sbjct: 54  KLHPILVFIFCLSFGITVLILLSSIYENHFGSTVTYYKKKDLDNDGYPFANLKNLVMVAG 113

Query: 118 HSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETR 177
           HS+YTSS CGKVDKEDSWFLE YQ++PGQAA+F++HIQEGVE   KDD++LLLFSGGETR
Sbjct: 114 HSVYTSSDCGKVDKEDSWFLESYQKNPGQAATFLSHIQEGVEAAGKDDESLLLFSGGETR 173

Query: 178 KDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYP 237
           KDAGPRSEAQSYW VAESKGWFG +E VR RA+TEEHARDSFENLLFSVCRFRELTG+YP
Sbjct: 174 KDAGPRSEAQSYWAVAESKGWFGKDE-VRSRALTEEHARDSFENLLFSVCRFRELTGSYP 232

Query: 238 HNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDP 297
            NITVVSYDFKE+RF HLHRSA+GFPESRFFY GTP S +SKE A++GEA+VRSQFQEDP
Sbjct: 233 QNITVVSYDFKEKRFAHLHRSAMGFPESRFFYLGTPASLSSKEGALKGEAMVRSQFQEDP 292

Query: 298 YGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPW 345
           YGC+GSLWRKKL RDPFHR+IPYPNGCPEI GLFRYCG+AP+ GSLPW
Sbjct: 293 YGCVGSLWRKKLKRDPFHRSIPYPNGCPEIGGLFRYCGSAPFPGSLPW 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443820|ref|XP_004139674.1| PREDICTED: uncharacterized protein C57A10.07-like [Cucumis sativus] gi|449520521|ref|XP_004167282.1| PREDICTED: uncharacterized protein C57A10.07-like [Cucumis sativus]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 289/349 (82%), Gaps = 6/349 (1%)

Query: 1   MKSFSFGSNSNSPKSFTAYP-SCDFDIESG-TIKRTRRSKKLPLHPLKMIKSFANRFNYY 58
           M +FS+GS S  PKSF AYP   D D+ESG T+KR R+SK   ++ ++M+KS  NR +YY
Sbjct: 1   MSNFSYGSPS--PKSFNAYPRGGDLDLESGATLKRIRKSKSSQIYLVRMLKSVGNRIHYY 58

Query: 59  KKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPFVKLKNLVMVAGH 118
            KLHP++V  I LS  V++L+IL  YESHY     Y K +V S+ +PF KL+NLVMVAGH
Sbjct: 59  YKLHPVIVLFIFLSIGVTLLMILSVYESHYRMANYYGKLSVVSEAFPFAKLQNLVMVAGH 118

Query: 119 SIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRK 178
           S+Y SSSC KV+KEDSW LE YQ+HPGQAA+F++HI+EGVEI A DD ALLLFSGGETRK
Sbjct: 119 SVYVSSSCEKVEKEDSWVLESYQKHPGQAATFISHIKEGVEIAAMDDAALLLFSGGETRK 178

Query: 179 DAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPH 238
           +AGPRSEAQSYW VAESKGWFG  ++VR RA+TEEHARDSFENLLFS+CRFRELTG YP 
Sbjct: 179 NAGPRSEAQSYWAVAESKGWFG--KNVRSRALTEEHARDSFENLLFSICRFRELTGKYPQ 236

Query: 239 NITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDPY 298
           NITVVSYDFKE+RF +LHRSAI FP+SRFFY+GTP S TSKEAA++GEALVR+QFQ+DP+
Sbjct: 237 NITVVSYDFKEKRFANLHRSAINFPKSRFFYAGTPASMTSKEAALKGEALVRAQFQDDPF 296

Query: 299 GCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWAQ 347
           GC GSL+RKKLGRDPFHR+IPYPNGCPEI GLFRYC T PY G LPW +
Sbjct: 297 GCQGSLYRKKLGRDPFHRSIPYPNGCPEIAGLFRYCRTDPYPGFLPWTK 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062934|ref|XP_002300936.1| predicted protein [Populus trichocarpa] gi|222842662|gb|EEE80209.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/300 (79%), Positives = 265/300 (88%), Gaps = 1/300 (0%)

Query: 47  MIKSFANRFNYYKKLHPILVFCIALSFAVSVLVILLAYESHYWQTIGYRKFNVGSDNYPF 106
           MIK FANR NY+ KLHP L+F I+LSF V++L++L  YES +     + K ++G ++YPF
Sbjct: 1   MIKCFANRLNYFYKLHPFLLFFISLSFGVTILIVLFLYESRHRTMNDFGKLDLGLNDYPF 60

Query: 107 VKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDK 166
             L NLVMVAGHS+YTSS CGKVD+EDSWFLE YQ+HPGQAA+FVAHIQEGVEIV+KDD 
Sbjct: 61  ANLSNLVMVAGHSVYTSS-CGKVDREDSWFLESYQKHPGQAATFVAHIQEGVEIVSKDDG 119

Query: 167 ALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSV 226
           ALLLFSGGETRK+AGPRSEAQSYW VAESKGWF NEESVRWRA+TEEHARDSFENLLFSV
Sbjct: 120 ALLLFSGGETRKNAGPRSEAQSYWAVAESKGWFSNEESVRWRALTEEHARDSFENLLFSV 179

Query: 227 CRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGE 286
           CRFRELTG YP NITVVSYDFKEERF +LHRSAI FPESRFFYSGTP S+TSKEAA++GE
Sbjct: 180 CRFRELTGKYPQNITVVSYDFKEERFANLHRSAISFPESRFFYSGTPASSTSKEAALKGE 239

Query: 287 ALVRSQFQEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
           +LVRSQFQEDPYGC GSLWRKKLGRDPFHR+IPYPNGCPEI+ LFRYCG APY G LPWA
Sbjct: 240 SLVRSQFQEDPYGCKGSLWRKKLGRDPFHRSIPYPNGCPEIKDLFRYCGEAPYPGYLPWA 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218978|ref|NP_173559.1| uncharacterized protein [Arabidopsis thaliana] gi|42571573|ref|NP_973877.1| uncharacterized protein [Arabidopsis thaliana] gi|332191973|gb|AEE30094.1| uncharacterized protein [Arabidopsis thaliana] gi|332191974|gb|AEE30095.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/349 (70%), Positives = 284/349 (81%), Gaps = 10/349 (2%)

Query: 1   MKSFSFGSNSNSPKSFTAYP-SCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYK 59
           MKS+  GS+    K+F AY  S DFD+ESG   R  R  K      KMIKS  NR ++  
Sbjct: 1   MKSYPIGSS----KAFHAYSRSGDFDLESGGTIRKSRKPKTSFS--KMIKSLGNRLHHMF 54

Query: 60  KLHPILVFCIALSFAVSVLVILLA-YESHYWQTIGY-RKFNVGSDNYPFVKLKNLVMVAG 117
           KLHP+LVF + +SF ++VL+++ + Y +    T+ Y +K ++ SD YPF  LKNLVMVAG
Sbjct: 55  KLHPVLVFVVCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSDGYPFANLKNLVMVAG 114

Query: 118 HSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETR 177
           HS+YTSS CGKV+KEDSWFLE YQ++PGQAA+F++HIQEGVE  AKDD++LLLFSGGETR
Sbjct: 115 HSVYTSSDCGKVEKEDSWFLESYQKNPGQAATFLSHIQEGVEAAAKDDESLLLFSGGETR 174

Query: 178 KDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYP 237
           KDAGPRSEAQSYW VAESKGWFG  E VR RA+TEEHARDSFENLLFSVCRFRELTG+YP
Sbjct: 175 KDAGPRSEAQSYWAVAESKGWFGKNE-VRSRALTEEHARDSFENLLFSVCRFRELTGSYP 233

Query: 238 HNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDP 297
            NITVVSYDFKEERF HLHRSA+GFPESRFFY GTP S +SKE A++GEALVRSQFQEDP
Sbjct: 234 QNITVVSYDFKEERFAHLHRSAMGFPESRFFYLGTPASLSSKEGALKGEALVRSQFQEDP 293

Query: 298 YGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
           YGC+GSLWRKKL RDPFHRTIPYP GCPEI GLFRYCG+AP+ GSLPW 
Sbjct: 294 YGCVGSLWRKKLNRDPFHRTIPYPIGCPEIGGLFRYCGSAPFPGSLPWG 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393587|gb|AAO42213.1| unknown protein [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 283/349 (81%), Gaps = 10/349 (2%)

Query: 1   MKSFSFGSNSNSPKSFTAYP-SCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYK 59
           MKS+  GS+    K+F AY  S  FD+ESG   R  R  K      KMIKS  NR ++  
Sbjct: 1   MKSYPIGSS----KAFHAYSRSGGFDLESGGTIRKSRKPKTSFS--KMIKSLGNRLHHMF 54

Query: 60  KLHPILVFCIALSFAVSVLVILLA-YESHYWQTIGY-RKFNVGSDNYPFVKLKNLVMVAG 117
           KLHP+LVF + +SF ++VL+++ + Y +    T+ Y +K ++ SD YPF  LKNLVMVAG
Sbjct: 55  KLHPVLVFVVCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSDGYPFANLKNLVMVAG 114

Query: 118 HSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETR 177
           HS+YTSS CGKV+KEDSWFLE YQ++PGQAA+F++HIQEGVE  AKDD++LLLFSGGETR
Sbjct: 115 HSVYTSSDCGKVEKEDSWFLESYQKNPGQAATFLSHIQEGVEAAAKDDESLLLFSGGETR 174

Query: 178 KDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYP 237
           KDAGPRSEAQSYW VAESKGWFG  E VR RA+TEEHARDSFENLLFSVCRFRELTG+YP
Sbjct: 175 KDAGPRSEAQSYWAVAESKGWFGKNE-VRSRALTEEHARDSFENLLFSVCRFRELTGSYP 233

Query: 238 HNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQEDP 297
            NITVVSYDFKEERF HLHRSA+GFPESRFFY GTP S +SKE A++GEALVRSQFQEDP
Sbjct: 234 QNITVVSYDFKEERFAHLHRSAMGFPESRFFYLGTPASLSSKEGALKGEALVRSQFQEDP 293

Query: 298 YGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPWA 346
           YGC+GSLWRKKL RDPFHRTIPYP GCPEI GLFRYCG+AP+ GSLPW 
Sbjct: 294 YGCVGSLWRKKLNRDPFHRTIPYPIGCPEIGGLFRYCGSAPFPGSLPWG 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2027057	342	AT1G21370 "AT1G21370" [Arabido	0.971	0.985	0.710	9.1e-132
POMBASE|SPAC57A10.07	311	SPAC57A10.07 "conserved protei	0.671	0.749	0.435	9.5e-50
CGD|CAL0004870	267	orf19.4061 [Candida albicans (	0.636	0.827	0.371	1.3e-31
UNIPROTKB|Q59LX6	267	CaO19.11543 "Putative uncharac	0.636	0.827	0.371	1.3e-31
ASPGD|ASPL0000048061	258	AN2510 [Emericella nidulans (t	0.674	0.906	0.329	1.7e-27
UNIPROTKB|G4NGK5	297	MGG_17688 "Uncharacterized pro	0.452	0.528	0.348	6.4e-26
SGD|S000005764	303	YOR238W "Putative protein of u	0.345	0.396	0.352	7.7e-22

TAIR|locus:2027057 AT1G21370 "AT1G21370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 248/349 (71%), Positives = 288/349 (82%)

Query:     1 MKSFSFGSNSNSPKSFTAYP-SCDFDIESG-TIKRTRRSKKLPLHPLKMIKSFANRFNYY 58
             MKS+  GS+    K+F AY  S DFD+ESG TI+++R+ K       KMIKS  NR ++ 
Sbjct:     1 MKSYPIGSS----KAFHAYSRSGDFDLESGGTIRKSRKPKT---SFSKMIKSLGNRLHHM 53

Query:    59 KKLHPILVFCIALSFAVSVLVILLA-YESHYWQTIGYRKFN-VGSDNYPFVKLKNLVMVA 116
              KLHP+LVF + +SF ++VL+++ + Y +    T+ Y K N + SD YPF  LKNLVMVA
Sbjct:    54 FKLHPVLVFVVCVSFGITVLILVSSIYGNRLGSTVSYYKKNDLDSDGYPFANLKNLVMVA 113

Query:   117 GHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGET 176
             GHS+YTSS CGKV+KEDSWFLE YQ++PGQAA+F++HIQEGVE  AKDD++LLLFSGGET
Sbjct:   114 GHSVYTSSDCGKVEKEDSWFLESYQKNPGQAATFLSHIQEGVEAAAKDDESLLLFSGGET 173

Query:   177 RKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTY 236
             RKDAGPRSEAQSYW VAESKGWFG  E VR RA+TEEHARDSFENLLFSVCRFRELTG+Y
Sbjct:   174 RKDAGPRSEAQSYWAVAESKGWFGKNE-VRSRALTEEHARDSFENLLFSVCRFRELTGSY 232

Query:   237 PHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTSKEAAMRGEALVRSQFQED 296
             P NITVVSYDFKEERF HLHRSA+GFPESRFFY GTP S +SKE A++GEALVRSQFQED
Sbjct:   233 PQNITVVSYDFKEERFAHLHRSAMGFPESRFFYLGTPASLSSKEGALKGEALVRSQFQED 292

Query:   297 PYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAPYSGSLPW 345
             PYGC+GSLWRKKL RDPFHRTIPYP GCPEI GLFRYCG+AP+ GSLPW
Sbjct:   293 PYGCVGSLWRKKLNRDPFHRTIPYPIGCPEIGGLFRYCGSAPFPGSLPW 341

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC57A10.07 SPAC57A10.07 "conserved protein (fungal and protozoan)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 108/248 (43%), Positives = 155/248 (62%)

Query:   105 PFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKD 164
             P   L +L++VAGH+++   S    D +  W LEPYQ+  G+   F  H++ G++++++D
Sbjct:    72 PLKNLTHLIIVAGHAVWLGGSTNGED-DSEWILEPYQK--GEGKVFAQHVRSGLDLLSQD 128

Query:   165 DKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLF 224
             D +LL+FSGG+TR  AGP SEAQSY++++       ++E +  R  TEE ARDS EN+LF
Sbjct:   129 DSSLLVFSGGQTRNGAGPSSEAQSYYSLSMQ---INSDEGLAARRTTEEFARDSLENVLF 185

Query:   225 SVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSGT-P--GSTTSKEA 281
             SV RF E+T  YP  ITVVS+DFK +RF +LHR AI FPE +F + G  P  G + +   
Sbjct:   186 SVARFYEVTSRYPQKITVVSFDFKRDRFLNLHRKAIKFPEHKFHFVGIDPEGGVSDATRE 245

Query:   282 AMRGEALVRSQFQEDPYGCLGSLW-RKKLGRDPFHRTIPYPNGCPEIEGLFRYCGTAP-- 338
             A R  A++   F EDPY C   L  +K++ R+PF R   Y   CPE+  L +YC + P  
Sbjct:   246 AERKNAII--PFTEDPYACSNPLLVKKRMERNPFRRQHSYLITCPELIPLLQYCPSDPSK 303

Query:   339 -YSGSLPW 345
              ++G LPW
Sbjct:   304 FFNGKLPW 311

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

CGD|CAL0004870 orf19.4061 [Candida albicans (taxid:5476)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 88/237 (37%), Positives = 128/237 (54%)

Query:   108 KLKNLVMVAGHSIYTSS-SCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDK 166
             K  +L+++  HSI+ S  + G+    D W L  +Q       +F   I   ++ + +D +
Sbjct:     3 KTSHLIILPCHSIWKSGPNLGET--RDEWHLVDFQIEGYDHLAFKQQILTSLQQLQQDPE 60

Query:   167 ALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSV 226
             + L+ SGGET+ DAGP SE+ SY+ +A SK    N+ S+  R  TE  ARDSFEN++FS+
Sbjct:    61 SYLIISGGETKLDAGPISESLSYYLLA-SK-LCQNDSSILSRVSTEVFARDSFENVIFSI 118

Query:   227 CRFRELTGTYPHNITVVSYDFKEERFTHLH-RSAIGFPESRFFYSGT---PGSTTSKEAA 282
             CR+ EL   YP  IT+V ++FK ERF   H + A+ FPE+R  Y G    P      E  
Sbjct:   119 CRYYELFAMYPEKITIVGFEFKRERFVKHHLQQALLFPENRINYIGNSPDPKDLDELEIE 178

Query:   283 MRGEALVRSQF-------QEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFR 332
                + L  S+F       Q D YG  GSL +KK+ R+PF+R   Y    P++    R
Sbjct:   179 KYFQELNESEFKYAVKHFQNDWYGLSGSLLKKKIARNPFNRYHGYSESNPKLADFLR 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59LX6 CaO19.11543 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 88/237 (37%), Positives = 128/237 (54%)

Query:   108 KLKNLVMVAGHSIYTSS-SCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDK 166
             K  +L+++  HSI+ S  + G+    D W L  +Q       +F   I   ++ + +D +
Sbjct:     3 KTSHLIILPCHSIWKSGPNLGET--RDEWHLVDFQIEGYDHLAFKQQILTSLQQLQQDPE 60

Query:   167 ALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSV 226
             + L+ SGGET+ DAGP SE+ SY+ +A SK    N+ S+  R  TE  ARDSFEN++FS+
Sbjct:    61 SYLIISGGETKLDAGPISESLSYYLLA-SK-LCQNDSSILSRVSTEVFARDSFENVIFSI 118

Query:   227 CRFRELTGTYPHNITVVSYDFKEERFTHLH-RSAIGFPESRFFYSGT---PGSTTSKEAA 282
             CR+ EL   YP  IT+V ++FK ERF   H + A+ FPE+R  Y G    P      E  
Sbjct:   119 CRYYELFAMYPEKITIVGFEFKRERFVKHHLQQALLFPENRINYIGNSPDPKDLDELEIE 178

Query:   283 MRGEALVRSQF-------QEDPYGCLGSLWRKKLGRDPFHRTIPYPNGCPEIEGLFR 332
                + L  S+F       Q D YG  GSL +KK+ R+PF+R   Y    P++    R
Sbjct:   179 KYFQELNESEFKYAVKHFQNDWYGLSGSLLKKKIARNPFNRYHGYSESNPKLADFLR 235

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000048061 AN2510 [Emericella nidulans (taxid:162425)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 83/252 (32%), Positives = 128/252 (50%)

Query:   111 NLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLL 170
             +L++V  H+IY        D+E+ W +E +Q H G+  +F  H++ G+ ++A D+ ALL+
Sbjct:     6 HLIIVCCHAIYLGGPSKGRDEEE-WLIERFQ-H-GETPTFTEHVKAGIRLLAGDEGALLV 62

Query:   171 FSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESV-RWRAMTEEHARDSFENLLFSVCRF 229
             FSGG T++ A   +E +SY  +A    +FG   S+   R   E HA DS++N+LFS+ RF
Sbjct:    63 FSGGATKRPATELAEGESYLNLARDNEFFGYASSIDSSRVAVEMHATDSYQNVLFSILRF 122

Query:   230 RELTGTYPHNITVVSYDFKEERFTHLHRSAIGF--PES-RFFYSGTPGSTTSKEAAMRGE 286
             R  TG YP  +TVV+++FK ERF   H  A+G   P S        P   T  +  + GE
Sbjct:   123 RLHTGRYPDQVTVVTHEFKRERFMSCHFPAVGLDKPGSGNVIGINPPEEVTPLKELLDGE 182

Query:   287 ALVR-SQFQEDPYGCLGSLWRKKLGR---DPFHRTIPYPNGC-PEIEGLFRYCGTA---- 337
                    ++ D YG    L  K++ R   D   + +    G  P +E L  + G +    
Sbjct:   183 EKRGLGLWKRDTYGVGAELKEKRMKRGWVDGLEKGLWVGVGLEPVVEELVHWNGGSTGNE 242

Query:   338 --PYSGSLPWAQ 347
               P    LPW +
Sbjct:   243 LFPNIMELPWCR 254

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NGK5 MGG_17688 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 242 (90.2 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 61/175 (34%), Positives = 95/175 (54%)

Query:   111 NLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLL 170
             +L++V GH I+          E  W +E Y++  G+ ++F+ HI+ G++ +A+D +A+L 
Sbjct:    10 HLIIVCGHGIWQGGP-QHGHNEAEWLIESYKR--GETSTFIEHIKAGLKALAQDSRAVLA 66

Query:   171 FSGGETRKDAGPRSEAQSYWTVAESKGWFG-------NEES-------VRWRAMTEEHAR 216
             FSGG T K+    SEA+SY  +A +  +FG         E+       +  R + EE A 
Sbjct:    67 FSGGPTWKETR-LSEARSYANLAAANDYFGCIPPTGETAEAHPLSPIPLSTRIIVEEQAL 125

Query:   217 DSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYSG 271
             DS+ N+LF++  F     T+P  +TVVS+ FK+ R    H SAIGFP     Y G
Sbjct:   126 DSYYNVLFAIIAFWRKFQTWPEKLTVVSHAFKKARIVEAHCSAIGFPIEHVNYIG 180

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000005764 YOR238W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 188 (71.2 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
 Identities = 48/136 (35%), Positives = 68/136 (50%)

Query:   211 TEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYS 270
             TEE + DSF+NL++S+ RF E+   +P  IT++ + FK  RF   H  AI +P+S   Y 
Sbjct:   146 TEEFSLDSFDNLIYSIYRFEEVNKKFPQKITIIGFAFKMPRFISCHAKAIDYPQSNITYI 205

Query:   271 GT---PGSTTSKEAAMRGEALVR-------SQFQEDPYGCLGSLWRKKLGRDPFHRTIPY 320
             G    P +    + +   + LV+       S F  D Y     L  KK  R+PF+RT PY
Sbjct:   206 GIDPKPANYNQTQLSKYYDDLVQMEDKNALSLFSSDWYATKDRLLTKKRSRNPFNRTAPY 265

Query:   321 PNG--CPE----IEGL 330
                  C E    IEG+
Sbjct:   266 AQNIFCKENGKRIEGI 281

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
cd06259	150	cd06259, YdcF-like, YdcF-like	9e-07
pfam02698	148	pfam02698, DUF218, DUF218 domain	8e-06

>gnl|CDD|99750 cd06259, YdcF-like, YdcF-like

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 145 GQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEES 204
           G +      +    E+        L+ SGG+   +    SEA++        G     E+
Sbjct: 14  GPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGE--GYSEAEAMARYLIELG--VPAEA 69

Query: 205 VRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRS 258
           +    + E+ + +++EN  FS    RE       ++ +V+  +      H+ R+
Sbjct: 70  I----LLEDRSTNTYENARFSAELLRERGI---RSVLLVTSAY------HMPRA 110

YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis. Length = 150

>gnl|CDD|217190 pfam02698, DUF218, DUF218 domain

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 17/109 (15%)

Query: 154 IQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEE 213
           +    E+        ++ SGG       P SEA+         G     E++      E 
Sbjct: 19  LDAAAELYRAGPAPRIIVSGGAGG--GEPVSEAEVMRRYLVELGV--PAEAILL----EP 70

Query: 214 HARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGF 262
            +R+++EN  FS    RE        + +V+  F      H+ R+ + F
Sbjct: 71  QSRNTYENARFSAELLRERG---LRRVLLVTSAF------HMRRALLLF 110

This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG4533	317	consensus Uncharacterized conserved protein [Funct	100.0
cd06259	150	YdcF-like YdcF-like. YdcF-like is a large family o	99.88
PRK10834	239	vancomycin high temperature exclusion protein; Pro	99.86
PRK10494	259	hypothetical protein; Provisional	99.83
PF02698	155	DUF218: DUF218 domain; InterPro: IPR003848 This do	99.79
COG1434	223	Uncharacterized conserved protein [Function unknow	99.32
COG2949	235	SanA Uncharacterized membrane protein [Function un	99.0
KOG4533	317	consensus Uncharacterized conserved protein [Funct	98.17

>KOG4533 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.6e-80  Score=576.45  Aligned_cols=309  Identities=44%  Similarity=0.716  Sum_probs=275.1

Q ss_pred             CCCCCCCCCCCCCCccccCCCCccccccccccccccCCCCCCChhhhhHHHHhhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 018997            1 MKSFSFGSNSNSPKSFTAYPSCDFDIESGTIKRTRRSKKLPLHPLKMIKSFANRFNYYKKLHPILVFCIALSFAVSVLVI   80 (347)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (347)
                      |.|+    ..++-+.|.| .|+.   .+++|.|.++||+.         +.+      .+||++++++.|.+|       
T Consensus         1 M~s~----~~~v~l~f~a-srs~---s~~~iwks~spksk---------~~g------v~L~~~l~~~~c~~F-------   50 (317)
T KOG4533|consen    1 MYSM----DEKVELIFVA-SRSG---SCHSIWKSSSPKSK---------DNG------VNLGQLLEYWHCAPF-------   50 (317)
T ss_pred             CCCc----cccceEEEee-cccC---CccceeeccCCCcc---------ccc------eeeccceeeeeeeeE-------
Confidence            5555    3667788887 6655   45799999999983         222      689999999988888       


Q ss_pred             HHHhhhc-cccccceeeeeccCCCCCCCCCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHH
Q 018997           81 LLAYESH-YWQTIGYRKFNVGSDNYPFVKLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVE  159 (347)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~  159 (347)
                       .+|+++ ..+..+|..++.....+|+.+++|||||.||+||++.. ..|+++++|+|++||+. |+..+|..|++.||+
T Consensus        51 -viy~~~~h~~~~~~~~t~l~~~~qpf~nlt~lvivaGh~v~~~~s-~~gE~~s~wfLe~yqk~-gq~~tf~~h~~~gid  127 (317)
T KOG4533|consen   51 -VIYEGNDHLAFIKHGLTALKLLLQPFDNLTNLVIVAGHQVKKEAS-AIGEAQSYWFLEEYQKR-GQAATFYVHSNDGID  127 (317)
T ss_pred             -EEEcCCCcceeEEeCchhhhhcccccccceeeEEEecceeeeccc-ccccccchhhhhhhhhc-cccceeeeecccccc
Confidence             378876 47778888888888899999999999999999999864 45789999999999996 999999999999999


Q ss_pred             HHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCc
Q 018997          160 IVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHN  239 (347)
Q Consensus       160 ~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~k  239 (347)
                      .+.+|..++|+||||||+..+||.|||||||.+++.   |+.++ +++|.+|||+|+|||||||||+|||+|+|++||+|
T Consensus       128 ~~~~DdeslLlfsgg~tr~~agp~seaqsyy~~s~~---~~kne-v~sr~~TEEfarDSfeNllfSv~RF~Evt~~yPQk  203 (317)
T KOG4533|consen  128 VPNFDDESLLLFSGGKTRLSAGPVSEAQSYYGGSIT---FGKNE-VRSRALTEEFARDSFENLLFSVYRFEEVTKKYPQK  203 (317)
T ss_pred             ccCCCcceeeeeeCcccccCCCCcchhhhheeeeee---ecchh-hhhhhhhHHHhHhhHHhhhhhhhhHHhHhccCCcc
Confidence            999999999999999999999999999999999998   55666 89999999999999999999999999999999999


Q ss_pred             EEEEcCcchhhHHHHHHHHHhCCCCCCcEEeccCCCCCh----HHHHHHHHHHHHhhcccCcCCCChhhhhhhhcCCCCC
Q 018997          240 ITVVSYDFKEERFTHLHRSAIGFPESRFFYSGTPGSTTS----KEAAMRGEALVRSQFQEDPYGCLGSLWRKKLGRDPFH  315 (347)
Q Consensus       240 ItVVt~~FK~~Rf~~lH~~Algfp~~~~~yiGip~~~~~----~~~~~~gE~~a~~~f~~DpYG~~~~L~~KR~~RNPf~  315 (347)
                      ||||+++||++||+.+|++||+||++||+||||+|.+..    ++.+.++|.....+|+.|||||.+.|++||+.||||+
T Consensus       204 ITvvsfdFK~~RF~~lHrkAi~fPes~f~yiGidP~~~~s~~t~e~~~k~~av~~~~FseDpYac~~~L~~Kk~~RnPF~  283 (317)
T KOG4533|consen  204 ITVVSFDFKMPRFISLHRKAIDFPESNFTYIGIDPKPANSNQTQESKYKDDAVQMEDFSEDPYACKDRLLTKKRSRNPFN  283 (317)
T ss_pred             eEEEEeeccchHHHHhHHhhcCCcccceEEEeeCCCccccchhhhhhhcccccchhhcccCchhhhhHHHHhhhccCccc
Confidence            999999999999999999999999999999999775532    2334455555567799999999999999999999999


Q ss_pred             CCCCCCCCchhHHHhhhhcCCCC---CCCCCCCC
Q 018997          316 RTIPYPNGCPEIEGLFRYCGTAP---YSGSLPWA  346 (347)
Q Consensus       316 R~~~Y~~s~pel~~Ll~~cg~~~---~~g~LPWs  346 (347)
                      |++||...|||+-+|++||+.+.   |+|+|||+
T Consensus       284 Rt~pY~I~CpE~g~l~~yc~sdp~~~f~gklPW~  317 (317)
T KOG4533|consen  284 RTAPYAIFCPENGKLIEYCESDPEYKFKGKLPWS  317 (317)
T ss_pred             ccCCceeecccccchheeCCCChhhccCCCCCCC
Confidence            99999999999999999999886   99999996

>cd06259 YdcF-like YdcF-like

Probab=99.88  E-value=1.1e-21  Score=166.90  Aligned_cols=129  Identities=17%  Similarity=0.221  Sum_probs=111.2

Q ss_pred             cEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 018997          111 NLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYW  190 (347)
Q Consensus       111 ~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~  190 (347)
                      +.|||+|++++.++.                     .+.+.+|+++|++++++.+...||+|||.+.++  ..|||+.|+
T Consensus         1 d~IvVLG~~~~~~~~---------------------~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~--~~~ea~~m~   57 (150)
T cd06259           1 DAIVVLGGGVNGDGP---------------------SPILAERLDAAAELYRAGPAPKLIVSGGQGPGE--GYSEAEAMA   57 (150)
T ss_pred             CEEEEeCCccCCCCC---------------------ChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCCHHHHHH
Confidence            589999999986642                     178999999999999999999999999999984  689999999


Q ss_pred             HHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCCCCcEEe
Q 018997          191 TVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRFFYS  270 (347)
Q Consensus       191 ~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~~~~~yi  270 (347)
                      ++|+++|+      +.++|++|++|+||+||++|+..++.+...   .+|+|||+.||+.|+..+ ++..+..   +..+
T Consensus        58 ~~l~~~gv------~~~~I~~e~~s~~T~ena~~~~~~~~~~~~---~~i~lVTs~~H~~Ra~~~-~~~~~~~---~~~~  124 (150)
T cd06259          58 RYLIELGV------PAEAILLEDRSTNTYENARFSAELLRERGI---RSVLLVTSAYHMPRALLI-FRKAGLD---VEVV  124 (150)
T ss_pred             HHHHHcCC------CHHHeeecCCCCCHHHHHHHHHHHHHhcCC---CeEEEECCHHHHHHHHHH-HHHcCCC---CcEE
Confidence            99999998      889999999999999999999999988532   799999999999999776 5555543   4455


Q ss_pred             ccCCC
Q 018997          271 GTPGS  275 (347)
Q Consensus       271 Gip~~  275 (347)
                      +.|..
T Consensus       125 ~~p~~  129 (150)
T cd06259         125 PAPTD  129 (150)
T ss_pred             ecCcc
Confidence            55543

YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.

>PRK10834 vancomycin high temperature exclusion protein; Provisional

Probab=99.86  E-value=5.9e-21  Score=179.69  Aligned_cols=121  Identities=13%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             CCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHH
Q 018997          109 LKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQS  188 (347)
Q Consensus       109 ~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~S  188 (347)
                      ..+.|||+|.|+|....                   ...+.|..||++|++++++.+...||+|||.+. +  ..+||++
T Consensus        44 ~~d~ivVLGa~~~~~~g-------------------~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~-~--~~~Ea~~  101 (239)
T PRK10834         44 YRQVGVVLGTAKYYRTG-------------------VINQYYRYRIQGAINAYNSGKVNYLLLSGDNAL-Q--SYNEPMT  101 (239)
T ss_pred             CCCEEEEcCCcccCCCC-------------------CcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCC-C--CCCHHHH
Confidence            35899999999985321                   235789999999999999999999999999864 3  4799999


Q ss_pred             HHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCC
Q 018997          189 YWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPE  264 (347)
Q Consensus       189 y~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~  264 (347)
                      |++||+++|+      ++++|++|+.++||+||+.|++.+|..      .+++|||.+||..|++-+ ++..|+..
T Consensus       102 M~~yLi~~GV------p~e~Ii~e~~s~nT~en~~~a~~i~~~------~~~iIVTq~fHm~RA~~i-a~~~Gi~~  164 (239)
T PRK10834        102 MRKDLIAAGV------DPSDIVLDYAGFRTLDSIVRTRKVFDT------NDFIIITQRFHCERALFI-ALHMGIQA  164 (239)
T ss_pred             HHHHHHHcCC------CHHHEEecCCCCCHHHHHHHHHHHhCC------CCEEEECCHHHHHHHHHH-HHHcCCce
Confidence            9999999999      999999999999999999999999853      479999999999999877 88888853

>PRK10494 hypothetical protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=171.73  Aligned_cols=127  Identities=18%  Similarity=0.171  Sum_probs=102.9

Q ss_pred             CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997          108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ  187 (347)
Q Consensus       108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~  187 (347)
                      ...+.|||+|.|+....+..+.     +     |. .+  .+ .+|+++|++++++++...+|+|||++.++  ++|||+
T Consensus        77 ~~~d~IVVLGgG~~~~~~~~~~-----~-----~l-~~--~~-~~Rl~~a~~L~r~~~~~~ii~SGg~~~~~--~~sEA~  140 (259)
T PRK10494         77 QKVDYIVVLGGGYTWNPQWAPS-----S-----NL-IN--NS-LPRLTEGIRLWRANPGAKLIFTGGAAKTN--TVSTAE  140 (259)
T ss_pred             CCCCEEEEcCCCcCCCCCCCCc-----H-----hH-hh--hH-HHHHHHHHHHHHhCCCCEEEEECCCCCCC--CCCHHH
Confidence            4578999999998644210000     0     00 01  12 48999999999999999999999999877  689999


Q ss_pred             HHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCC
Q 018997          188 SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFP  263 (347)
Q Consensus       188 Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp  263 (347)
                      .|.++|++.|+      ++++|++|++|+||+||..|+..++.+      .+|.+||+.||+.|.+.+ .++.|+.
T Consensus       141 ~~~~~l~~lGV------p~~~Ii~e~~s~nT~eNa~~~~~~~~~------~~iiLVTsa~Hm~RA~~~-f~~~Gl~  203 (259)
T PRK10494        141 VGARVAQSLGV------PREDIITLDLPKDTEEEAAAVKQAIGD------APFLLVTSASHLPRAMIF-FQQEGLN  203 (259)
T ss_pred             HHHHHHHHcCC------CHHHeeeCCCCCCHHHHHHHHHHHhCC------CCEEEECCHHHHHHHHHH-HHHcCCc
Confidence            99999999998      899999999999999999999876632      479999999999999776 6666763

>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins

Probab=99.79  E-value=3.4e-19  Score=152.33  Aligned_cols=122  Identities=20%  Similarity=0.274  Sum_probs=82.0

Q ss_pred             CcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHH
Q 018997          110 KNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSY  189 (347)
Q Consensus       110 ~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy  189 (347)
                      .++|||+|.+...+                    +..++....|++.|++++++++...||||||.+..+  ..+||+.|
T Consensus         2 aD~ivVlG~~~~~~--------------------~~~~~~~~~R~~~a~~L~~~g~~~~il~SGg~~~~~--~~~ea~~~   59 (155)
T PF02698_consen    2 ADAIVVLGSALDPD--------------------GQLSPESRERLDEAARLYKAGYAPRILFSGGYGHGD--GRSEAEAM   59 (155)
T ss_dssp             -SEEEEES-------------------------------S-HHHHHHHHHHHH-HHT--EEEE--SSTTH--TS-HHHHH
T ss_pred             CcEEEECCcCcccc--------------------ccccHhHHHHHHHHHHHHhcCCCCeEEECCCCCCCC--CCCHHHHH
Confidence            58999999333222                    233567899999999999999999999999999987  58999999


Q ss_pred             HHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCC
Q 018997          190 WTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFP  263 (347)
Q Consensus       190 ~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp  263 (347)
                      .++++++|+      +.++|++|+.|+||+||+.|+...+.+.  ++ ++|+|||+.||+.|.+.+ .+..+.+
T Consensus        60 ~~~l~~~gv------p~~~I~~e~~s~~T~ena~~~~~~~~~~--~~-~~iilVT~~~H~~Ra~~~-~~~~~~~  123 (155)
T PF02698_consen   60 RDYLIELGV------PEERIILEPKSTNTYENARFSKRLLKER--GW-QSIILVTSPYHMRRARMI-FRKVGPD  123 (155)
T ss_dssp             HHHHHHT---------GGGEEEE----SHHHHHHHHHHHHHT---SS-S-EEEE--CCCHHHHHHH-HHHHH--
T ss_pred             HHHHHhccc------chheeEccCCCCCHHHHHHHHHHHHHhh--cC-CeEEEECCHHHHHHHHHH-HHHhCCC
Confidence            999999998      8899999999999999999999999754  33 799999999999999765 5555555

; PDB: 3CA8_A.

>COG1434 Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=7.3e-11  Score=106.14  Aligned_cols=99  Identities=21%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHH
Q 018997          148 ASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQSYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVC  227 (347)
Q Consensus       148 ~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~  227 (347)
                      -.+..|+.++.++.+..+.+.++.|||.+..+.        .++++...|+      +.++|++|++|+||+||..||+.
T Consensus        78 ~~~~~rl~~~~~~~~~~~~~~v~~s~~~~~~~~--------~~~~~~~~gv------~~~~i~~e~~s~~T~eNa~~s~~  143 (223)
T COG1434          78 TDHLIRLLEAARLAKILPISGVLESGGVIEIQA--------TRRYLENLGV------PAERIILEDRSRNTVENARFSRR  143 (223)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceeccCCcCccHH--------HHHHHHHcCC------CcccEEecCCCccHHHHHHHHHH
Confidence            456788999999999999999998888776442        2899999998      89999999999999999999999


Q ss_pred             HHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCC
Q 018997          228 RFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPE  264 (347)
Q Consensus       228 rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~  264 (347)
                      .+.+.   .|.++++||+.||+.|++.+ ++..|.+.
T Consensus       144 ~l~~~---~~~~~ilVTs~~Hm~Ra~~~-~~~~g~~~  176 (223)
T COG1434         144 LLRTQ---GPESVILVTSPYHMPRALLL-FRKLGISV  176 (223)
T ss_pred             HHHHc---CCceEEEECCHHHHHHHHHH-HHHCCCcc
Confidence            99875   78999999999999999766 66666653

>COG2949 SanA Uncharacterized membrane protein [Function unknown]

Probab=99.00  E-value=2.8e-08  Score=93.10  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=115.5

Q ss_pred             CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCCCCCCCCCHHH
Q 018997          108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETRKDAGPRSEAQ  187 (347)
Q Consensus       108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~~EagpiSEA~  187 (347)
                      -..++.+|+|.|=|...++                   ..+.+..||++|+++++...-.+|++||--+..+   .-|..
T Consensus        55 P~r~vgvVLGtsky~~~g~-------------------~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s---YnEp~  112 (235)
T COG2949          55 PARQVGVVLGTSKYLAKGP-------------------PNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS---YNEPR  112 (235)
T ss_pred             CccceEEEEeccccccCCC-------------------ccHhHHHHHHHHHHHHhcCCeeEEEEecCCCccc---ccchH
Confidence            3467999999998776532                   3478999999999999999999999999988877   68999


Q ss_pred             HHHHHHHHcCCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcchhhHHHHHHHHHhCCCCCCc
Q 018997          188 SYWTVAESKGWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDFKEERFTHLHRSAIGFPESRF  267 (347)
Q Consensus       188 Sy~~~a~~~gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~FK~~Rf~~lH~~Algfp~~~~  267 (347)
                      +|.+.+++.|+      +.+.|.+.=--=.|+|-+.=.    +++.|.  .++||||-.||-+|++-+ |+..|...   
T Consensus       113 tM~kdL~~~GV------p~~~i~lDyAGFrTLDSvvRA----~kVF~~--~~ftIItQ~FHceRAlfi-A~~~gIdA---  176 (235)
T COG2949         113 TMRKDLIAAGV------PAKNIFLDYAGFRTLDSVVRA----RKVFGT--NDFTIITQRFHCERALFI-ARQMGIDA---  176 (235)
T ss_pred             HHHHHHHHcCC------CHHHeeecccCccHHHHHHHH----HHHcCc--CcEEEEecccccHHHHHH-HHHhCCce---
Confidence            99999999998      888888766666788755544    555444  589999999999999765 88777754   


Q ss_pred             EEecc-CCCCCh--HHHHHHHHHHH--HhhcccCcCCCChh
Q 018997          268 FYSGT-PGSTTS--KEAAMRGEALV--RSQFQEDPYGCLGS  303 (347)
Q Consensus       268 ~yiGi-p~~~~~--~~~~~~gE~~a--~~~f~~DpYG~~~~  303 (347)
                        +|. .|+++.  --...-+|.+|  .+.|..|-.+....
T Consensus       177 --ic~~ap~p~~~~~~~vrlRE~~ARv~Av~D~~I~~~~P~  215 (235)
T COG2949         177 --ICFAAPDPEGRSGLSVRLREFLARVKAVLDLYILKREPK  215 (235)
T ss_pred             --EEecCCCccccCCcchHHHHHHHHHHHHhhhhccccCCc
Confidence              343 122221  11235578765  46666655544443

>KOG4533 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=7.2e-07  Score=85.60  Aligned_cols=92  Identities=29%  Similarity=0.500  Sum_probs=75.3

Q ss_pred             CCCCCCCcEEEEe-----cccccCCCCC-CC--C----CCccccccccc-ccCCCCchHHHHHHHHHHHHHhhC-C--Cc
Q 018997          104 YPFVKLKNLVMVA-----GHSIYTSSSC-GK--V----DKEDSWFLEPY-QQHPGQAASFVAHIQEGVEIVAKD-D--KA  167 (347)
Q Consensus       104 ~~~~~~~~LIIV~-----gHaIw~g~~~-~~--~----~~e~eW~Lepf-Q~~~g~~~tf~~hI~~ai~~l~~d-p--~a  167 (347)
                      +.+.....||.|+     ||.||+...+ ++  |    ..-.-|++++| |.++.+|++|+.|-..+|..+.+- .  .-
T Consensus         2 ~s~~~~v~l~f~asrs~s~~~iwks~spksk~~gv~L~~~l~~~~c~~Fviy~~~~h~~~~~~~~t~l~~~~qpf~nlt~   81 (317)
T KOG4533|consen    2 YSMDEKVELIFVASRSGSCHSIWKSSSPKSKDNGVNLGQLLEYWHCAPFVIYEGNDHLAFIKHGLTALKLLLQPFDNLTN   81 (317)
T ss_pred             CCccccceEEEeecccCCccceeeccCCCccccceeeccceeeeeeeeEEEEcCCCcceeEEeCchhhhhccccccccee
Confidence            3456677899999     9999997643 22  1    24467999999 899999999999999999997754 3  44


Q ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 018997          168 LLLFSGGETRKDAGPRSEAQSYWTVAES  195 (347)
Q Consensus       168 ~LIfSGGqt~~EagpiSEA~Sy~~~a~~  195 (347)
                      ++||+|-|+..+++.++||++||-+-..
T Consensus        82 lvivaGh~v~~~~s~~gE~~s~wfLe~y  109 (317)
T KOG4533|consen   82 LVIVAGHQVKKEASAIGEAQSYWFLEEY  109 (317)
T ss_pred             eEEEecceeeecccccccccchhhhhhh
Confidence            5999999999999999999999987553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
3ca8_A	266	Protein YDCF; two domains, alpha/beta fold, helix	99.75

>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}

Probab=99.75  E-value=6.2e-18  Score=159.11  Aligned_cols=115  Identities=20%  Similarity=0.187  Sum_probs=98.2

Q ss_pred             CCCcEEEEecccccCCCCCCCCCCcccccccccccCCCCchHHHHHHHHHHHHHhhCCCcEEEEeCCCCC----------
Q 018997          108 KLKNLVMVAGHSIYTSSSCGKVDKEDSWFLEPYQQHPGQAASFVAHIQEGVEIVAKDDKALLLFSGGETR----------  177 (347)
Q Consensus       108 ~~~~LIIV~gHaIw~g~~~~~~~~e~eW~LepfQ~~~g~~~tf~~hI~~ai~~l~~dp~a~LIfSGGqt~----------  177 (347)
                      ...+.|||+|.++.                              .|+++|++++++.+.. ||||||+|.          
T Consensus        35 ~~~D~IVVLG~~~~------------------------------~Rl~~A~~L~~~g~~~-lIvSGG~g~~t~~~~~~v~   83 (266)
T 3ca8_A           35 YQADCVILAGNAVM------------------------------PTIDAACKIARDQQIP-LLISGGIGHSTTFLYSAIA   83 (266)
T ss_dssp             CCCSEEEEESCCCH------------------------------HHHHHHHHHHHHHTCC-EEEECCSSTTHHHHHHHHH
T ss_pred             CCCCEEEECCCCch------------------------------HHHHHHHHHHHcCCCc-EEEECCCCCcccchhhhhc
Confidence            36899999998873                              3899999999999876 789999998          


Q ss_pred             ---------CCCCCCCHHHHHHHHHHHc-CCCCCCcccccchhhhccccChhHHHHHHHHHHHHHhCCCCCcEEEEcCcc
Q 018997          178 ---------KDAGPRSEAQSYWTVAESK-GWFGNEESVRWRAMTEEHARDSFENLLFSVCRFRELTGTYPHNITVVSYDF  247 (347)
Q Consensus       178 ---------~EagpiSEA~Sy~~~a~~~-gif~~~~~~~~RIltEe~A~DSyENLLFSi~rF~e~tg~yP~kItVVt~~F  247 (347)
                               ++  ..|||+.|.++|+++ |+      +.++|++|++|+||+||+.||..++.+. |--+.+|+|||+.|
T Consensus        84 ~~~~y~~l~~~--~~sEA~~m~~~l~~~~GV------p~~~IllE~~S~nT~ENa~~s~~ll~~~-g~~~~~iiLVTs~~  154 (266)
T 3ca8_A           84 QHPHYNTIRTT--GRAEATILADIAHQFWHI------PHEKIWIEDQSTNCGENARFSIALLNQA-VERVHTAIVVQDPT  154 (266)
T ss_dssp             TCTTGGGSCCT--TSCHHHHHHHHHHHTTCC------CGGGEEEECCCCSHHHHHHHHHHHHHTC-SSCCSCEEEECCTT
T ss_pred             cccccccccCC--CCCHHHHHHHHHHHhcCC------CHHHEEeCCCCccHHHHHHHHHHHHHhc-CCCCCeEEEECChh
Confidence                     24  689999999999998 98      8999999999999999999999999763 32347999999999


Q ss_pred             hhhHHHHHHHHHhCCC
Q 018997          248 KEERFTHLHRSAIGFP  263 (347)
Q Consensus       248 K~~Rf~~lH~~Algfp  263 (347)
                      |+.|.+-. ++..+..
T Consensus       155 Hm~RA~~~-f~~~~~~  169 (266)
T 3ca8_A          155 MQRRTMAT-FRRMTGD  169 (266)
T ss_dssp             THHHHHHH-HHHHHCC
T ss_pred             HHHHHHHH-HHHhCCC
Confidence            99999876 4444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00