Citrus Sinensis ID: 019076
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUG3 | 353 | Inositol-tetrakisphosphat | yes | no | 0.968 | 0.949 | 0.698 | 1e-130 | |
| O81893 | 391 | Inositol-tetrakisphosphat | no | no | 0.890 | 0.787 | 0.710 | 1e-123 | |
| Q84Y01 | 342 | Inositol-tetrakisphosphat | N/A | no | 0.887 | 0.897 | 0.430 | 5e-71 | |
| Q9SBA5 | 319 | Inositol-tetrakisphosphat | no | no | 0.869 | 0.943 | 0.4 | 4e-62 | |
| Q8BYN3 | 419 | Inositol-tetrakisphosphat | yes | no | 0.826 | 0.682 | 0.308 | 2e-34 | |
| P0C0T1 | 419 | Inositol-tetrakisphosphat | yes | no | 0.826 | 0.682 | 0.314 | 2e-34 | |
| Q7ZU91 | 396 | Inositol-tetrakisphosphat | no | no | 0.835 | 0.729 | 0.307 | 3e-34 | |
| Q13572 | 414 | Inositol-tetrakisphosphat | yes | no | 0.826 | 0.690 | 0.305 | 1e-33 | |
| Q5F480 | 407 | Inositol-tetrakisphosphat | yes | no | 0.835 | 0.710 | 0.307 | 3e-33 | |
| Q7SY78 | 396 | Inositol-tetrakisphosphat | N/A | no | 0.826 | 0.722 | 0.311 | 6e-33 |
| >sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/345 (69%), Positives = 285/345 (82%), Gaps = 10/345 (2%)
Query: 1 MRLNGEISHKEDEEDEEEKQSGVLQP----ERLVVGYALTSKKKKSFLQPKLEILARYIL 56
+ +NG + E++ S V++ + ++VGYALTSKK KSFLQPKLE LAR
Sbjct: 9 ITMNGTREMETTEQETSSPCSLVIEAFPVKKSIIVGYALTSKKIKSFLQPKLEGLAR--- 65
Query: 57 THTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116
NKGI FVAIDQN+PLS+QGPFD+VLHK G EW +I+E++R HP+VT+LDPPDAI
Sbjct: 66 ---NKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAIL 122
Query: 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD 176
HL NRQSMLQ VAD+NLSD NG+V VP+Q+VI KD+ SIP+ V AGL+LPLVAKPLV D
Sbjct: 123 HLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLPLVAKPLVAD 182
Query: 177 GSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKR 236
GSAKSHEL LAYD+ SL +LEPP++LQEFVNHGG+LFK+YI+GE I+VVRRFSLP+VS+R
Sbjct: 183 GSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHGGVLFKVYIVGEAIRVVRRFSLPDVSRR 242
Query: 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296
EL K VFRFPRVS AAASADDADLDP IAELPPRPLLERLA+ELR LGLRLFN+D+I
Sbjct: 243 ELPKSAGVFRFPRVSCAAASADDADLDPSIAELPPRPLLERLAKELRRGLGLRLFNLDII 302
Query: 297 REHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRKR 341
REHG RD FYVIDINYFPGYGKMP+YEH+FTDFLLS+ QS+C+KR
Sbjct: 303 REHGTRDRFYVIDINYFPGYGKMPEYEHVFTDFLLSVVQSQCKKR 347
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 9 |
| >sp|O81893|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/314 (71%), Positives = 267/314 (85%), Gaps = 6/314 (1%)
Query: 28 RLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKL 87
+LVVGYALTSKKKKSFLQPKLE+LAR KGI FVAID NRPLS+QGPFDVVLHKL
Sbjct: 80 KLVVGYALTSKKKKSFLQPKLELLAR------RKGIFFVAIDLNRPLSEQGPFDVVLHKL 133
Query: 88 SGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV 147
G EW ++IEDY+QKHPEVT+LDPP +I+ ++NRQSMLQ +ADL LSDC+G + VP+QMV
Sbjct: 134 LGKEWEEVIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKLSDCSGSLFVPKQMV 193
Query: 148 ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVN 207
+ KDS + D V EAGLK PLVAKPL +DG+AKSH+L+LAYDR SL+EL+PP++LQEFVN
Sbjct: 194 VLKDSAASADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQEFVN 253
Query: 208 HGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267
HGG++FK++++G+ IKV+RRFSLPNVS E AKV VF+FPRVSSAAASAD+ADLDP +A
Sbjct: 254 HGGVMFKVFVVGDVIKVMRRFSLPNVSNCEKAKVDGVFQFPRVSSAAASADNADLDPRVA 313
Query: 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFT 327
ELPP+P LE L +ELR LGLRLFNIDMIREHG ++VFYVIDINYFPGYGK+PDYE +F
Sbjct: 314 ELPPKPFLEALVKELRSLLGLRLFNIDMIREHGSKNVFYVIDINYFPGYGKLPDYEQVFV 373
Query: 328 DFLLSLEQSKCRKR 341
DF +L Q K +KR
Sbjct: 374 DFFQNLAQVKYKKR 387
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q84Y01|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 202/323 (62%), Gaps = 16/323 (4%)
Query: 18 EKQSGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQ 77
E SGV P R V+GYAL KK++SF+QP L + ++G+ V +D ++PL++Q
Sbjct: 8 EPSSGVTHPPRYVIGYALAPKKQQSFIQPSL------VAQAASRGMDLVPVDASQPLAEQ 61
Query: 78 GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN-LSDC 136
GPF +++HKL G +W + + +HP V I+DPP AI LHNR SMLQ V++L+ +D
Sbjct: 62 GPFHLLIHKLYGDDWRAQLVAFAARHPAVPIVDPPHAIDRLHNRISMLQVVSELDHAADQ 121
Query: 137 NGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196
+ +P Q+V+ D+ ++ D A L+ PL+AKPLV DG+AKSH++ L Y R L +L
Sbjct: 122 DSTFGIPSQVVVY-DAAALADFGLLAALRFPLIAKPLVADGTAKSHKMSLVYHREGLGKL 180
Query: 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS----- 251
PP++LQEFVNHGG++FK+Y++G + V+R SLP+VS + A F +VS
Sbjct: 181 RPPLVLQEFVNHGGVIFKVYVVGGHVTCVKRRSLPDVSPEDDASAQGSVSFSQVSNLPTE 240
Query: 252 -SAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 310
+A + L+ + +PP + ++A LR LGL+LFN DMIR+ D + VIDI
Sbjct: 241 RTAEEYYGEKSLEDAV--VPPAAFINQIAGGLRRALGLQLFNFDMIRDVRAGDRYLVIDI 298
Query: 311 NYFPGYGKMPDYEHIFTDFLLSL 333
NYFPGY KMP YE + TDF +
Sbjct: 299 NYFPGYAKMPGYETVLTDFFWEM 321
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Also able to phosphorylate Ins(3,5,6)P3 but not Ins(1,4,5)P3, Ins(2,4,5)P3, Ins(1,3,4,6)P4 nor Ins(1,3,5,6)P4. Has higher specific activity on Ins(3,4,5,6)P4 than Ins(1,3,4)P3 and Ins(3,5,6)P3. Can also could use Ins(1,2,5,6)P4 as a substrate. Zea mays (taxid: 4577) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q9SBA5|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 198/320 (61%), Gaps = 19/320 (5%)
Query: 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHT-NKGISFVAIDQNRPLSDQGPFDVVLH 85
ER +VGYAL +KK+ SF+QP L + H+ +GI V +D + L +QG D ++H
Sbjct: 7 ERYLVGYALAAKKQHSFIQPSL-------IEHSRQRGIDLVKLDPTKSLLEQGKLDCIIH 59
Query: 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN--LSDCNGKVRVP 143
KL + W + + ++R+K P V ++D P+AI+ LHNR SML+ + L +SD + VP
Sbjct: 60 KLYDVYWKENLHEFREKCPGVPVIDLPEAIERLHNRVSMLEVITQLRFPVSDSE-RFGVP 118
Query: 144 RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQ 203
Q+V+ DS + LK P++AKPL DGSAKSH++FL YD+ + L+ P++LQ
Sbjct: 119 EQVVVM-DSSVLSGGGALGELKFPVIAKPLDADGSAKSHKMFLIYDQEGMKILKAPIVLQ 177
Query: 204 EFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 263
EFVNHGG++FK+Y++G+ +K V+R SLP++S+ ++ F ++S+ A +D +++
Sbjct: 178 EFVNHGGVIFKVYVVGDHVKCVKRRSLPDISEEKIGTSKGSLPFSQISNLTAQ-EDKNIE 236
Query: 264 PG------IAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYG 317
G E+PP L LA+ +R +GL LFN D+IR+ + + +IDINYFPGY
Sbjct: 237 YGEDRSLEKVEMPPLSFLTDLAKAMRESMGLNLFNFDVIRDAKDANRYLIIDINYFPGYA 296
Query: 318 KMPDYEHIFTDFLLSLEQSK 337
KMP YE + T+F + K
Sbjct: 297 KMPSYEPVLTEFFWDMVTKK 316
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not (By similarity). Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q8BYN3|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 32/318 (10%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKVKKLNFQAFAELCR------KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVIT----KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194
++ P M +T +D++ + +Q GL P + K V G+ SHE+ + +++ L+
Sbjct: 124 RICSPPFMELTSLCGEDTMRLLEQ---NGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLN 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPE 239
Query: 255 ASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINY 312
+S+ +LD G+ E P ++ L+R LR LG+ LF ID+I + VID+N
Sbjct: 240 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINN-QTGQHAVIDVNA 298
Query: 313 FPGYGKMPDYEHIFTDFL 330
FPGY + ++ FTD L
Sbjct: 299 FPGYEGVSEF---FTDLL 313
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Also acts as an inositol polyphosphate phosphatase that dephosphorylate Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 to Ins(1,3,4)P3, and Ins(1,3,4,5,6)P5 to Ins(3,4,5,6)P4. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Probably acts as the rate-limiting enzyme of the InsP6 pathway. Modifies TNF-alpha-induced apoptosis by interfering with the activation of TNFRSF1A-associated death domain. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|P0C0T1|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 160/318 (50%), Gaps = 32/318 (10%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKIKKLNFQAFAELCR------KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQALELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVITK----DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194
++ P M +T D++ + + E GL P + K V G+ SHE+ + +++ LS
Sbjct: 124 RICSPPFMELTSLCGDDTMRLLE---ENGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLS 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPE 239
Query: 255 ASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINY 312
+S+ LD G+ E P ++ L+R LR LG+ LF ID+I + VIDIN
Sbjct: 240 SSSVLTALDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINN-QTGQHAVIDINA 298
Query: 313 FPGYGKMPDYEHIFTDFL 330
FPGY + ++ FTD L
Sbjct: 299 FPGYEGVSEF---FTDLL 313
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Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also acts as an inositol polyphosphate phosphatase that dephosphorylate Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 to Ins(1,3,4)P3, and Ins(1,3,4,5,6)P5 to Ins(3,4,5,6)P4. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Probably acts as the rate-limiting enzyme of the InsP6 pathway. Modifies TNF-alpha-induced apoptosis by interfering with the activation of TNFRSF1A-associated death domain (By similarity). Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q7ZU91|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 159/315 (50%), Gaps = 26/315 (8%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +GI + +D ++P+ QGPFDV++HKL+
Sbjct: 10 VGYWLSEKKIKKLNFQTFVDLCR------KQGIEMIQLDLSQPIESQGPFDVIIHKLTDH 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+ + ++DY HPE ILDP AI+ L +R + + L S +
Sbjct: 64 IVDADQNVTESLLLVQGVQDYIDAHPETVILDPLPAIRTLLDRCKSYKLIHKLEHSMEDD 123
Query: 139 KVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELE 197
++ P MV+ T+ +Q+ + G+ P + KP V G+ SHE+ + + L +++
Sbjct: 124 RICSPPFMVLKTECGFETLEQLHKHGITFPFICKPQVAHGT-NSHEMAIIFSEEDLKDIK 182
Query: 198 PPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 257
PP +LQ F+NH +L+K++++GE VV+R S+ N + F VS +S+
Sbjct: 183 PPCVLQSFINHNAVLYKVFVVGEAYSVVQRPSIRNFPSGPTDRRAISFNSHHVSKPESSS 242
Query: 258 DDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315
D G + P ++++++R+L LG+ LF ID+I + VIDIN FPG
Sbjct: 243 HLTCRDNMVGQSWKPSNEVIQKISRKLHQALGISLFGIDIIINN-QTGQHAVIDINAFPG 301
Query: 316 YGKMPDYEHIFTDFL 330
Y +P++ F D L
Sbjct: 302 YEGVPEF---FDDLL 313
|
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q13572|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 161/318 (50%), Gaps = 32/318 (10%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 123
Query: 139 KVRVPRQMVITK----DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194
++ P M +T D++ + ++ GL P + K V G+ SHE+ + +++ L+
Sbjct: 124 RICSPPFMELTSLCGDDTMRLLEK---NGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLN 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPE 239
Query: 255 ASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINY 312
+S+ +LD G+ E P ++ L+R LR LG+ LF ID+I + VIDIN
Sbjct: 240 SSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINN-QTGQHAVIDINA 298
Query: 313 FPGYGKMPDYEHIFTDFL 330
FPGY + ++ FTD L
Sbjct: 299 FPGYEGVSEF---FTDLL 313
|
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. Also acts as an inositol polyphosphate phosphatase that dephosphorylate Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 to Ins(1,3,4)P3, and Ins(1,3,4,5,6)P5 to Ins(3,4,5,6)P4. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Probably acts as the rate-limiting enzyme of the InsP6 pathway. Modifies TNF-alpha-induced apoptosis by interfering with the activation of TNFRSF1A-associated death domain. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q5F480|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 26/315 (8%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK + L R +G+ V +D +P+ DQGP DV++HKL+
Sbjct: 10 VGYWLSEKKIRKLNFQAFAELCR------KRGVEVVQLDLTKPIEDQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E + ++Y HPE ILDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVQRFQEYIDAHPETIILDPLPAIRTLLDRSKSYELIRQIEAYMQDE 123
Query: 139 KVRVPRQMVITKDSLSIPDQVFEA-GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELE 197
++ P M +T Q+ E GL P + K V G+ SHE+ + +++ L +
Sbjct: 124 RICSPPFMELTSACGEDTLQLIEKNGLAFPFICKTRVAHGT-NSHEMAIIFNQEGLKAVR 182
Query: 198 PPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 257
PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS +S+
Sbjct: 183 PPCVIQSFINHNAVLYKVFVVGESYTVVKRPSLKNFSAGISDRESIFFNSHNVSKPESSS 242
Query: 258 DDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315
LD G+ E P ++ +++ LR LG+ LF ID+I + VIDIN FPG
Sbjct: 243 VLTALDKIEGVFERPDDDVIREISKALRQALGVSLFGIDIIINNQTGQ-HAVIDINAFPG 301
Query: 316 YGKMPDYEHIFTDFL 330
Y + ++ FTD L
Sbjct: 302 YEGVSEF---FTDLL 313
|
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
| >sp|Q7SY78|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 160/318 (50%), Gaps = 32/318 (10%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY ++ KK K L R +GI V ++ +P+ DQGP DV++HKL+
Sbjct: 10 VGYWMSEKKIKKLNFQAFADLCR------KRGIEVVQLNLAKPIEDQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
M+ + +DY + HPE ILDP AI+ L +R + + + +
Sbjct: 64 ILEADQKDSESMQLVQRFQDYIEAHPETIILDPLPAIRTLLDRSKSYELIRRIETYMQDE 123
Query: 139 KVRVPRQMVIT----KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194
++ P M + +D+L I ++ GL PLV K V G+ SHE+ + ++ L
Sbjct: 124 RICSPPFMELMAECDEDTLKILEK---NGLAFPLVCKTRVAHGT-NSHEMAIIFNPEGLW 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254
++PP ++Q F++H +L+K++++GE+ VV R SL N S + F VS
Sbjct: 180 SIKPPCVIQSFISHNAVLYKVFVVGESYTVVERPSLKNFSLGASDRASIFFNSHNVSKPE 239
Query: 255 ASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINY 312
+S+ L+ G+ E P ++ +++ LR LG+ LF ID+I + VIDIN
Sbjct: 240 SSSVLTALEKVEGVFERPCDEVIRGISKALRQALGISLFGIDIIINNKTGQ-HAVIDINA 298
Query: 313 FPGYGKMPDYEHIFTDFL 330
FPGY +P++ FTD L
Sbjct: 299 FPGYEGVPEF---FTDLL 313
|
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway. May also act as an isomerase that interconverts the inositol tetrakisphosphate isomers Ins(1,3,4,5)P4 and Ins(1,3,4,6)P4 in the presence of ADP and magnesium. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| 351722440 | 341 | inositol phosphate kinase [Glycine max] | 0.979 | 0.994 | 0.757 | 1e-140 | |
| 356574337 | 338 | PREDICTED: inositol-tetrakisphosphate 1- | 0.924 | 0.946 | 0.778 | 1e-140 | |
| 224081885 | 319 | predicted protein [Populus trichocarpa] | 0.884 | 0.959 | 0.741 | 1e-134 | |
| 224103791 | 347 | predicted protein [Populus trichocarpa] | 0.913 | 0.910 | 0.764 | 1e-132 | |
| 255562182 | 327 | Inositol-tetrakisphosphate 1-kinase, put | 0.893 | 0.944 | 0.779 | 1e-131 | |
| 255537904 | 355 | Inositol-tetrakisphosphate 1-kinase, put | 0.953 | 0.929 | 0.709 | 1e-130 | |
| 18413088 | 353 | inositol-tetrakisphosphate 1-kinase 2 [A | 0.968 | 0.949 | 0.698 | 1e-128 | |
| 222624511 | 349 | hypothetical protein OsJ_10020 [Oryza sa | 0.965 | 0.957 | 0.66 | 1e-127 | |
| 351721983 | 354 | inositol phosphate kinase [Glycine max] | 0.968 | 0.946 | 0.680 | 1e-127 | |
| 115451713 | 349 | Os03g0230500 [Oryza sativa Japonica Grou | 0.965 | 0.957 | 0.657 | 1e-127 |
| >gi|351722440|ref|NP_001237500.1| inositol phosphate kinase [Glycine max] gi|156752167|gb|ABU93834.1| inositol phosphate kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/347 (75%), Positives = 299/347 (86%), Gaps = 8/347 (2%)
Query: 1 MRLNGEISHKEDEEDEEEKQSGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTN 60
MRLNGEIS E+EE+E++ + +++VVGYALTSKKKKSFLQP LAR N
Sbjct: 1 MRLNGEISSGEEEEEEKQTGTTTFSSQKVVVGYALTSKKKKSFLQPSFTGLAR------N 54
Query: 61 KGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHN 120
+GI+FVAID N+PL +QGPFD++LHKLSG W +IIEDYR+KHPEVT+LDPPDAI+HLHN
Sbjct: 55 RGINFVAIDLNKPLPEQGPFDIILHKLSGEVWREIIEDYREKHPEVTVLDPPDAIQHLHN 114
Query: 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITK--DSLSIPDQVFEAGLKLPLVAKPLVVDGS 178
RQSMLQDV DLNLSDC+GKV VPRQ+VITK D SIP +V +AG+KLPLVAKPLVVDG+
Sbjct: 115 RQSMLQDVLDLNLSDCHGKVGVPRQLVITKEKDPSSIPYEVTKAGMKLPLVAKPLVVDGT 174
Query: 179 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL 238
AKSHELFLAYD FSLS +EPP++LQEFVNHGG+LFKIYI+GETIKVVRRFSLPN+SKREL
Sbjct: 175 AKSHELFLAYDEFSLSAVEPPLVLQEFVNHGGLLFKIYIVGETIKVVRRFSLPNISKREL 234
Query: 239 AKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIRE 298
+KV VFRFPRVS AAASADDADLDP IAE PPRPLLERLARELRHRLGL LFNIDMIRE
Sbjct: 235 SKVAGVFRFPRVSCAAASADDADLDPNIAEHPPRPLLERLARELRHRLGLHLFNIDMIRE 294
Query: 299 HGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRKRPATA 345
+G +DVFYVIDINYFPGYGKMP YEH+FTDFLLSL +SKC + A
Sbjct: 295 YGTKDVFYVIDINYFPGYGKMPGYEHVFTDFLLSLVESKCSNKKLAA 341
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574337|ref|XP_003555305.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/330 (77%), Positives = 290/330 (87%), Gaps = 10/330 (3%)
Query: 19 KQSGV--LQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSD 76
KQ+G +++VVGYALTSKKKKSFLQP LAR N+GI+FVAID N+PL +
Sbjct: 15 KQTGTTTFSSQKVVVGYALTSKKKKSFLQPSFTGLAR------NRGINFVAIDLNKPLLE 68
Query: 77 QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDC 136
QGPFD++LHKLSG EWC+IIEDYRQKHPEVT+LDPPDAI+HLHNRQSMLQDV DLNLSDC
Sbjct: 69 QGPFDIILHKLSGEEWCEIIEDYRQKHPEVTVLDPPDAIQHLHNRQSMLQDVVDLNLSDC 128
Query: 137 NGKVRVPRQMVI--TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194
+GKV VPRQ+VI KD SIP ++ +AG+KLPLVAKPLVVDG+AKSHELFLAYD FSLS
Sbjct: 129 HGKVGVPRQLVIPKEKDPSSIPYEITKAGMKLPLVAKPLVVDGTAKSHELFLAYDEFSLS 188
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254
ELEPP++LQEFVNHGG+LFKIYI+GETIKVV+RFSLPN+SK E++KV VFRFPRVS AA
Sbjct: 189 ELEPPLVLQEFVNHGGLLFKIYIVGETIKVVKRFSLPNISKHEVSKVAGVFRFPRVSCAA 248
Query: 255 ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFP 314
ASADDADLDP IAE PPRPLLERLARELRHRLGL LFNIDMIRE+G +DVFYVIDINYFP
Sbjct: 249 ASADDADLDPNIAEHPPRPLLERLARELRHRLGLCLFNIDMIREYGTKDVFYVIDINYFP 308
Query: 315 GYGKMPDYEHIFTDFLLSLEQSKCRKRPAT 344
GYGKMPDYEH+FTDFLLSL QS C+K+ AT
Sbjct: 309 GYGKMPDYEHVFTDFLLSLVQSNCKKKLAT 338
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081885|ref|XP_002306515.1| predicted protein [Populus trichocarpa] gi|222855964|gb|EEE93511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/321 (74%), Positives = 275/321 (85%), Gaps = 15/321 (4%)
Query: 30 VVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSG 89
VVGYALTSKK KSFL+PKLE LAR NKGI FVAIDQNRPLSDQGPFD+VLHKL+G
Sbjct: 4 VVGYALTSKKIKSFLKPKLEGLAR------NKGILFVAIDQNRPLSDQGPFDIVLHKLTG 57
Query: 90 MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 149
EW +I+EDYR+ HPEVT+LDPPDAI+HLHNRQSMLQ VAD+NLS+ GKV +P+Q+VI
Sbjct: 58 KEWRQILEDYRRTHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLSNSYGKVGIPKQIVIK 117
Query: 150 KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG 209
KD+ SIP V +AGL LP+VAKPLV DGSAKSHEL LAYD+ SL +LEPP++LQEFVNHG
Sbjct: 118 KDASSIPGAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQQSLQKLEPPLVLQEFVNHG 177
Query: 210 GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAEL 269
G++FK+YI+GETIKVVRRFSLP+V KREL+ + VFRFPRVS AAASAD+ADLDPG+AEL
Sbjct: 178 GVMFKVYIVGETIKVVRRFSLPDVCKRELSNIAGVFRFPRVSCAAASADNADLDPGVAEL 237
Query: 270 PPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG---------YGKMP 320
PPRPLLE+LAREL RLGLRLFN+D+IREHG RD FYVIDINYFPG YGKMP
Sbjct: 238 PPRPLLEKLARELCRRLGLRLFNLDIIREHGTRDRFYVIDINYFPGESTFSFIFCYGKMP 297
Query: 321 DYEHIFTDFLLSLEQSKCRKR 341
+YEHIFTDFLLSL Q++ +K+
Sbjct: 298 EYEHIFTDFLLSLVQNQYKKK 318
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103791|ref|XP_002313195.1| predicted protein [Populus trichocarpa] gi|222849603|gb|EEE87150.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/336 (76%), Positives = 285/336 (84%), Gaps = 20/336 (5%)
Query: 22 GVLQPERLVV-GYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPF 80
+ QP++LVV GYALTSKKKKSFLQPKLE+LAR NKGI FVAID NRPL DQGPF
Sbjct: 17 SIQQPQKLVVVGYALTSKKKKSFLQPKLEVLAR------NKGILFVAIDLNRPLLDQGPF 70
Query: 81 DVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKV 140
DVVLHKL G +WC IEDYR+K+PEV +LDPPDAI+ L NRQSML DV +LNLSDC GKV
Sbjct: 71 DVVLHKLLGKDWCGAIEDYRKKNPEVAVLDPPDAIEQLLNRQSMLNDVTNLNLSDCYGKV 130
Query: 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPM 200
RVPRQMVI D SIP +V AGLKLPLVAKPLVVDG+AKSH++FLAYD+FSLSELEPP+
Sbjct: 131 RVPRQMVINNDPSSIPHEVTSAGLKLPLVAKPLVVDGTAKSHQMFLAYDQFSLSELEPPL 190
Query: 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260
+LQEFVNHGG+LFKIYI+GE IKVVRRFSLPNV+K+EL+KV VFRFPRVSSAAASADDA
Sbjct: 191 VLQEFVNHGGVLFKIYIVGEAIKVVRRFSLPNVTKQELSKVEGVFRFPRVSSAAASADDA 250
Query: 261 DLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG----- 315
DLDP +AELPP PLLE+LARELRHRLGLRLFN+DMIREHG +DVFYVIDINYFPG
Sbjct: 251 DLDPSVAELPPLPLLEKLARELRHRLGLRLFNVDMIREHGTKDVFYVIDINYFPGKYITF 310
Query: 316 --------YGKMPDYEHIFTDFLLSLEQSKCRKRPA 343
YGKMPDYEHIFTDFLLSL +SK + RPA
Sbjct: 311 TQVFYLSRYGKMPDYEHIFTDFLLSLMESKYKNRPA 346
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562182|ref|XP_002522099.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223538698|gb|EEF40299.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/318 (77%), Positives = 274/318 (86%), Gaps = 9/318 (2%)
Query: 1 MRLNGEISHKEDEEDEEEKQSGV---LQPERLVVGYALTSKKKKSFLQPKLEILARYILT 57
MR+N EIS +E E+ EE K V Q + +VVGYALTSKK+KSFLQPKLE LAR
Sbjct: 1 MRINSEISSQEGEDKEEGKTMSVSIQQQQKMVVVGYALTSKKRKSFLQPKLEALAR---- 56
Query: 58 HTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKH 117
NKGI FVAID +PL DQGPFDVVLHKL G +WC++IEDY+QK+PEVT+LDPPDAI+H
Sbjct: 57 --NKGILFVAIDLKKPLLDQGPFDVVLHKLLGKDWCEVIEDYQQKNPEVTVLDPPDAIQH 114
Query: 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 177
L NRQSMLQDVADLNL+DC+GKV VPRQMV+ KD SIP +V +AGLKLPLVAKPLVVDG
Sbjct: 115 LSNRQSMLQDVADLNLADCHGKVCVPRQMVVNKDPSSIPREVSKAGLKLPLVAKPLVVDG 174
Query: 178 SAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE 237
+AKSHELFLAYD FSLSELEPPM+LQEFVNHGG+LFK+YI+GETIKVVRRFSLPNVS E
Sbjct: 175 TAKSHELFLAYDEFSLSELEPPMVLQEFVNHGGVLFKVYIVGETIKVVRRFSLPNVSNCE 234
Query: 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIR 297
LAKV VFRFPRVSSAAASADDA+LDP + ELPPRPLLERLARELR RLGLRLFNIDMIR
Sbjct: 235 LAKVAGVFRFPRVSSAAASADDANLDPSVGELPPRPLLERLARELRCRLGLRLFNIDMIR 294
Query: 298 EHGMRDVFYVIDINYFPG 315
EHG RD FYVIDINYFPG
Sbjct: 295 EHGTRDRFYVIDINYFPG 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537904|ref|XP_002510017.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223550718|gb|EEF52204.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/344 (70%), Positives = 287/344 (83%), Gaps = 14/344 (4%)
Query: 5 GEISHKEDEEDEEEKQSGV-------LQPERLVVGYALTSKKKKSFLQPKLEILARYILT 57
G+ SH EE+++E S V LQ +LVVGYALTSKK KSFLQPK + LAR
Sbjct: 17 GDNSHYHGEEEDDEMISSVSPTTCRSLQ-RKLVVGYALTSKKIKSFLQPKFQGLAR---- 71
Query: 58 HTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKH 117
NKGI FVAID N+PLSDQGPFD+VLHKL+G EW +I+ED+R+ HPEVT+LDPPDAI+H
Sbjct: 72 --NKGILFVAIDPNKPLSDQGPFDIVLHKLTGKEWRQILEDFRRTHPEVTVLDPPDAIQH 129
Query: 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 177
LHNRQSMLQ VAD+NLS+ GKV VPRQ+V+ +D+ IP V +AGL LP+VAKPLV DG
Sbjct: 130 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVVKRDAAFIPVAVLKAGLMLPIVAKPLVADG 189
Query: 178 SAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE 237
SAKSHEL LAYD+ SL +LEPP++LQEFVNHGG+LFK+YI+GE IKVVRRFSLP+V KRE
Sbjct: 190 SAKSHELSLAYDQESLQKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVCKRE 249
Query: 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIR 297
L+K VF FPRVS AAASAD+ADLDPG+AELPP+PLLE+LA+ELR RLGLRLFN+D+IR
Sbjct: 250 LSKNAGVFHFPRVSCAAASADNADLDPGVAELPPQPLLEKLAKELRRRLGLRLFNLDIIR 309
Query: 298 EHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRKR 341
EHG RD FYVIDINYFPGYGKMP+YEHIFTDFLLSL Q++ +KR
Sbjct: 310 EHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLGQNQYKKR 353
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18413088|ref|NP_567334.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] gi|83288250|sp|Q9SUG3.2|ITPK2_ARATH RecName: Full=Inositol-tetrakisphosphate 1-kinase 2; AltName: Full=Inositol 1,3,4-trisphosphate 5/6-kinase 2; Short=AtItpk-2; Short=Inositol-triphosphate 5/6-kinase 2; Short=Ins(1,3,4)P(3) 5/6-kinase 2 gi|15215758|gb|AAK91424.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|16323320|gb|AAL15415.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|332657201|gb|AEE82601.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/345 (69%), Positives = 285/345 (82%), Gaps = 10/345 (2%)
Query: 1 MRLNGEISHKEDEEDEEEKQSGVLQP----ERLVVGYALTSKKKKSFLQPKLEILARYIL 56
+ +NG + E++ S V++ + ++VGYALTSKK KSFLQPKLE LAR
Sbjct: 9 ITMNGTREMETTEQETSSPCSLVIEAFPVKKSIIVGYALTSKKIKSFLQPKLEGLAR--- 65
Query: 57 THTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116
NKGI FVAIDQN+PLS+QGPFD+VLHK G EW +I+E++R HP+VT+LDPPDAI
Sbjct: 66 ---NKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAIL 122
Query: 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD 176
HL NRQSMLQ VAD+NLSD NG+V VP+Q+VI KD+ SIP+ V AGL+LPLVAKPLV D
Sbjct: 123 HLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLPLVAKPLVAD 182
Query: 177 GSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKR 236
GSAKSHEL LAYD+ SL +LEPP++LQEFVNHGG+LFK+YI+GE I+VVRRFSLP+VS+R
Sbjct: 183 GSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHGGVLFKVYIVGEAIRVVRRFSLPDVSRR 242
Query: 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296
EL K VFRFPRVS AAASADDADLDP IAELPPRPLLERLA+ELR LGLRLFN+D+I
Sbjct: 243 ELPKSAGVFRFPRVSCAAASADDADLDPSIAELPPRPLLERLAKELRRGLGLRLFNLDII 302
Query: 297 REHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRKR 341
REHG RD FYVIDINYFPGYGKMP+YEH+FTDFLLS+ QS+C+KR
Sbjct: 303 REHGTRDRFYVIDINYFPGYGKMPEYEHVFTDFLLSVVQSQCKKR 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222624511|gb|EEE58643.1| hypothetical protein OsJ_10020 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/350 (66%), Positives = 275/350 (78%), Gaps = 16/350 (4%)
Query: 1 MRLNGEISHKEDEEDEEEKQSGVLQPE----------RLVVGYALTSKKKKSFLQPKLEI 50
MRL+GE+S EDEE+ Q+ L RLVVGYALT KK KSFLQP L +
Sbjct: 1 MRLHGEVSFDEDEEEVVMVQAAALSSSPLNGGAVPVTRLVVGYALTKKKVKSFLQPNLLL 60
Query: 51 LARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 110
LAR KGI+ VAID RPL++QGPFDV+LHK++ EW +++EDY ++HPEVT+LD
Sbjct: 61 LAR------KKGINLVAIDDTRPLAEQGPFDVILHKITSKEWQQVLEDYHEEHPEVTVLD 114
Query: 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVA 170
PP+AI HL+NRQSML +V+DLNLS G+V PRQ+VI +D SIP V AGL LPLVA
Sbjct: 115 PPNAINHLNNRQSMLAEVSDLNLSSFYGEVCTPRQLVIMRDPSSIPTAVAMAGLTLPLVA 174
Query: 171 KPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSL 230
KPLVVDG++KSHEL LAYD SLS L+PP++LQEFVNHGGILFK+YIIGETI+VVRRFSL
Sbjct: 175 KPLVVDGTSKSHELSLAYDEASLSMLDPPLVLQEFVNHGGILFKVYIIGETIQVVRRFSL 234
Query: 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRL 290
P+V+ +L V V+RFPRVS AAASAD ADLDP I+ELPPRPLLE+L +ELR RLGLRL
Sbjct: 235 PDVNTYDLLNNVGVYRFPRVSCAAASADHADLDPHISELPPRPLLEKLGKELRGRLGLRL 294
Query: 291 FNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRK 340
FNIDMIRE G +D +Y+IDINYFPG+GKMP YEHIFTDFLL+L QSK +K
Sbjct: 295 FNIDMIRELGTKDRYYIIDINYFPGFGKMPGYEHIFTDFLLNLAQSKYKK 344
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351721983|ref|NP_001237484.1| inositol phosphate kinase [Glycine max] gi|156752165|gb|ABU93833.1| inositol phosphate kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/360 (68%), Positives = 288/360 (80%), Gaps = 25/360 (6%)
Query: 1 MRLNGEISHKEDEEDEEEK------------------QSGVLQPERLVV-GYALTSKKKK 41
MRL E++ K D+ E+E+ +G P+R+VV GYALT+KK K
Sbjct: 1 MRLREEVACKNDDVCEKEEVVIENDVTVAQNHWCPVVNAGFSSPKRVVVVGYALTTKKIK 60
Query: 42 SFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ 101
SFLQPKLE LAR NKGI FVAID NRPLSDQGPFD+VLHKLSG EW +++EDYR
Sbjct: 61 SFLQPKLEGLAR------NKGILFVAIDHNRPLSDQGPFDIVLHKLSGKEWRQVLEDYRL 114
Query: 102 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFE 161
HPEVT+LDPPDAI+HL NRQ MLQ VAD+NLSD G V VPRQ+VI +D+L+IP+ V +
Sbjct: 115 SHPEVTVLDPPDAIQHLRNRQYMLQAVADMNLSDSYGIVGVPRQLVIKRDALAIPELVNK 174
Query: 162 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGET 221
AGL LPLVAKPLV DGSAKSHEL LAY+ FSL LEPP++LQEFVNHGG+LFK+YI+G+
Sbjct: 175 AGLTLPLVAKPLVADGSAKSHELSLAYEHFSLQNLEPPLVLQEFVNHGGVLFKVYIVGDA 234
Query: 222 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARE 281
IKVVRRFSLP+VSK EL+K ++RFPRVS AAASADDADLDP +AELPPRPLLE+LA+E
Sbjct: 235 IKVVRRFSLPDVSKWELSKDAGIYRFPRVSCAAASADDADLDPTVAELPPRPLLEKLAKE 294
Query: 282 LRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRKR 341
LR RLGLRLFN+D+IRE+G R+ FYVIDINYFPGYGKMP+YEHIFTDFLLSL Q K +K+
Sbjct: 295 LRWRLGLRLFNLDIIREYGTRNHFYVIDINYFPGYGKMPEYEHIFTDFLLSLGQGKYKKK 354
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115451713|ref|NP_001049457.1| Os03g0230500 [Oryza sativa Japonica Group] gi|33303695|gb|AAQ02374.1| inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa] gi|108706985|gb|ABF94780.1| inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed [Oryza sativa Japonica Group] gi|113547928|dbj|BAF11371.1| Os03g0230500 [Oryza sativa Japonica Group] gi|215704830|dbj|BAG94858.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192383|gb|EEC74810.1| hypothetical protein OsI_10626 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/350 (65%), Positives = 274/350 (78%), Gaps = 16/350 (4%)
Query: 1 MRLNGEISHKEDEED----------EEEKQSGVLQPERLVVGYALTSKKKKSFLQPKLEI 50
MRL+GE+S EDEE+ G + RLVVGYALT KK KSFLQP L +
Sbjct: 1 MRLHGEVSFDEDEEEVVMVPAAALSSSPLNGGAVPVTRLVVGYALTKKKVKSFLQPNLLL 60
Query: 51 LARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILD 110
LAR KGI+ VAID RPL++QGPFDV+LHK++ EW +++EDY ++HPEVT+LD
Sbjct: 61 LAR------KKGINLVAIDDTRPLAEQGPFDVILHKITSKEWQQVLEDYHEEHPEVTVLD 114
Query: 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVA 170
PP+AI HL+NRQSML +V+DLNLS G+V PRQ+VI +D SIP V AGL LPLVA
Sbjct: 115 PPNAINHLNNRQSMLAEVSDLNLSSFYGEVCTPRQLVIMRDPSSIPTAVAMAGLTLPLVA 174
Query: 171 KPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSL 230
KPLVVDG++KSHEL LAYD SLS L+PP++LQEFVNHGGILFK+YIIGETI+VVRRFSL
Sbjct: 175 KPLVVDGTSKSHELSLAYDEASLSMLDPPLVLQEFVNHGGILFKVYIIGETIQVVRRFSL 234
Query: 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRL 290
P+V+ +L V V+RFPRVS AAASAD ADLDP I+ELPPRPLLE+L +ELR RLGLRL
Sbjct: 235 PDVNTYDLLNNVGVYRFPRVSCAAASADHADLDPHISELPPRPLLEKLGKELRGRLGLRL 294
Query: 291 FNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKCRK 340
FNIDMIRE G +D +Y+IDINYFPG+GKMP YEHIFTDFLL+L QSK +K
Sbjct: 295 FNIDMIRELGTKDRYYIIDINYFPGFGKMPGYEHIFTDFLLNLAQSKYKK 344
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| TAIR|locus:2132487 | 353 | AT4G08170 [Arabidopsis thalian | 0.887 | 0.869 | 0.603 | 4.2e-95 | |
| TAIR|locus:2134253 | 391 | AT4G33770 [Arabidopsis thalian | 0.898 | 0.795 | 0.574 | 1.5e-92 | |
| TAIR|locus:2148990 | 319 | ITPK1 "inositol (1,3,4) P3 5/6 | 0.583 | 0.633 | 0.398 | 2.9e-48 | |
| ZFIN|ZDB-GENE-040426-1953 | 396 | itpk1 "inositol 1,3,4-triphosp | 0.560 | 0.489 | 0.296 | 3.9e-25 | |
| UNIPROTKB|J9NW00 | 419 | ITPK1 "Uncharacterized protein | 0.566 | 0.467 | 0.302 | 1.6e-24 | |
| UNIPROTKB|Q5F480 | 407 | ITPK1 "Inositol-tetrakisphosph | 0.572 | 0.486 | 0.287 | 5.8e-24 | |
| RGD|1595691 | 421 | Itpk1 "inositol-tetrakisphosph | 0.560 | 0.460 | 0.295 | 9.9e-24 | |
| UNIPROTKB|P0C0T1 | 419 | ITPK1 "Inositol-tetrakisphosph | 0.560 | 0.463 | 0.295 | 9.9e-24 | |
| MGI|MGI:2446159 | 419 | Itpk1 "inositol 1,3,4-triphosp | 0.560 | 0.463 | 0.290 | 1.6e-23 | |
| UNIPROTKB|Q13572 | 414 | ITPK1 "Inositol-tetrakisphosph | 0.566 | 0.473 | 0.288 | 5.8e-23 |
| TAIR|locus:2132487 AT4G08170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 189/313 (60%), Positives = 223/313 (71%)
Query: 29 LVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS 88
++VGYALTSKK KSFLQPKLE LAR NKGI FVAIDQN+PLS+QGPFD+VLHK
Sbjct: 41 IIVGYALTSKKIKSFLQPKLEGLAR------NKGILFVAIDQNKPLSEQGPFDIVLHKQI 94
Query: 89 GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI 148
G EW +I+E++R HP+VT+LDPPDAI HL NRQSMLQ VAD+NLSD NG+V VP+Q+VI
Sbjct: 95 GKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVI 154
Query: 149 TKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH 208
KD+ SIP+ V AG DGSAKSHEL LAYD+ SL +LEPP++LQEFVNH
Sbjct: 155 KKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNH 214
Query: 209 GGILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXXXXXLDPGIAX 268
GG+LFK+YI+GE I+VVRRFSLP+VS+REL K LDP IA
Sbjct: 215 GGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIAE 274
Query: 269 XXXXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTD 328
FN+D+IREHG RD FYVIDINYFPGYGKMP+YEH+FTD
Sbjct: 275 LPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYEHVFTD 334
Query: 329 FLLSLEQSKCRKR 341
FLLS+ QS+C+KR
Sbjct: 335 FLLSVVQSQCKKR 347
|
|
| TAIR|locus:2134253 AT4G33770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 182/317 (57%), Positives = 222/317 (70%)
Query: 25 QPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVL 84
Q ++LVVGYALTSKKKKSFLQPKLE+LAR KGI FVAID NRPLS+QGPFDVVL
Sbjct: 77 QQQKLVVGYALTSKKKKSFLQPKLELLAR------RKGIFFVAIDLNRPLSEQGPFDVVL 130
Query: 85 HKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 144
HKL G EW ++IEDY+QKHPEVT+LDPP +I+ ++NRQSMLQ +ADL LSDC+G + VP+
Sbjct: 131 HKLLGKEWEEVIEDYQQKHPEVTVLDPPGSIQRIYNRQSMLQGMADLKLSDCSGSLFVPK 190
Query: 145 QMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLLQE 204
QMV+ KDS + D V EAG DG+AKSH+L+LAYDR SL+EL+PP++LQE
Sbjct: 191 QMVVLKDSAASADAVVEAGLKFPLVAKPLWIDGTAKSHQLYLAYDRRSLAELDPPLVLQE 250
Query: 205 FVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKXXXXXXXXXXXXXXXXXXXXXLDP 264
FVNHGG++FK++++G+ IKV+RRFSLPNVS E AK LDP
Sbjct: 251 FVNHGGVMFKVFVVGDVIKVMRRFSLPNVSNCEKAKVDGVFQFPRVSSAAASADNADLDP 310
Query: 265 GIAXXXXXXXXXXXXXXXXXXXXXXXFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEH 324
+A FNIDMIREHG ++VFYVIDINYFPGYGK+PDYE
Sbjct: 311 RVAELPPKPFLEALVKELRSLLGLRLFNIDMIREHGSKNVFYVIDINYFPGYGKLPDYEQ 370
Query: 325 IFTDFLLSLEQSKCRKR 341
+F DF +L Q K +KR
Sbjct: 371 VFVDFFQNLAQVKYKKR 387
|
|
| TAIR|locus:2148990 ITPK1 "inositol (1,3,4) P3 5/6-kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 86/216 (39%), Positives = 135/216 (62%)
Query: 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTN-KGISFVAIDQNRPLSDQGPFDVVLH 85
ER +VGYAL +KK+ SF+QP L + H+ +GI V +D + L +QG D ++H
Sbjct: 7 ERYLVGYALAAKKQHSFIQPSL-------IEHSRQRGIDLVKLDPTKSLLEQGKLDCIIH 59
Query: 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN--LSDCNGKVRVP 143
KL + W + + ++R+K P V ++D P+AI+ LHNR SML+ + L +SD + VP
Sbjct: 60 KLYDVYWKENLHEFREKCPGVPVIDLPEAIERLHNRVSMLEVITQLRFPVSDSE-RFGVP 118
Query: 144 RQMVITKDS-LSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEPPMLL 202
Q+V+ S LS + E DGSAKSH++FL YD+ + L+ P++L
Sbjct: 119 EQVVVMDSSVLSGGGALGEL--KFPVIAKPLDADGSAKSHKMFLIYDQEGMKILKAPIVL 176
Query: 203 QEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL 238
QEFVNHGG++FK+Y++G+ +K V+R SLP++S+ ++
Sbjct: 177 QEFVNHGGVIFKVYVVGDHVKCVKRRSLPDISEEKI 212
|
|
| ZFIN|ZDB-GENE-040426-1953 itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 64/216 (29%), Positives = 111/216 (51%)
Query: 31 VGYALTSKK-KKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS- 88
VGY L+ KK KK Q +++ + +GI + +D ++P+ QGPFDV++HKL+
Sbjct: 10 VGYWLSEKKIKKLNFQTFVDLCRK-------QGIEMIQLDLSQPIESQGPFDVIIHKLTD 62
Query: 89 -----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCN 137
+ + ++DY HPE ILDP AI+ L +R + + L S +
Sbjct: 63 HIVDADQNVTESLLLVQGVQDYIDAHPETVILDPLPAIRTLLDRCKSYKLIHKLEHSMED 122
Query: 138 GKVRVPRQMVI-TKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSEL 196
++ P MV+ T+ +Q+ + G G+ SHE+ + + L ++
Sbjct: 123 DRICSPPFMVLKTECGFETLEQLHKHGITFPFICKPQVAHGT-NSHEMAIIFSEEDLKDI 181
Query: 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN 232
+PP +LQ F+NH +L+K++++GE VV+R S+ N
Sbjct: 182 KPPCVLQSFINHNAVLYKVFVVGEAYSVVQRPSIRN 217
|
|
| UNIPROTKB|J9NW00 ITPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 66/218 (30%), Positives = 109/218 (50%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K KL A L +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKIK-----KLNFQAFAELCR-KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVITKDSLSIPD--QVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSEL 196
++ P M +T SLS D ++ E SHE+ + +++ LS +
Sbjct: 124 RICSPPFMELT--SLSGDDTMRLLEQNGLAFPFICKTRVAHGTNSHEMAIVFNQEGLSAI 181
Query: 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
+PP ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 182 QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFS 219
|
|
| UNIPROTKB|Q5F480 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 62/216 (28%), Positives = 103/216 (47%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK + KL A L +G+ V +D +P+ DQGP DV++HKL+
Sbjct: 10 VGYWLSEKKIR-----KLNFQAFAELCR-KRGVEVVQLDLTKPIEDQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E + ++Y HPE ILDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVQRFQEYIDAHPETIILDPLPAIRTLLDRSKSYELIRQIEAYMQDE 123
Query: 139 KVRVPRQMVITKDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSELEP 198
++ P M +T Q+ E SHE+ + +++ L + P
Sbjct: 124 RICSPPFMELTSACGEDTLQLIEKNGLAFPFICKTRVAHGTNSHEMAIIFNQEGLKAVRP 183
Query: 199 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
P ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 184 PCVIQSFINHNAVLYKVFVVGESYTVVKRPSLKNFS 219
|
|
| RGD|1595691 Itpk1 "inositol-tetrakisphosphate 1-kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
Identities = 65/220 (29%), Positives = 111/220 (50%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K KL A L +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKVK-----KLNFQAFAELCR-KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVITK----DSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLS 194
++ P M +T D++ + +Q G G+ SHE+ + +++ LS
Sbjct: 124 RICSPPFMELTSLCGDDTMRLLEQ---NGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLS 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFS 219
|
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| UNIPROTKB|P0C0T1 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 9.9e-24, Sum P(2) = 9.9e-24
Identities = 65/220 (29%), Positives = 111/220 (50%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K KL A L +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKIK-----KLNFQAFAELCR-KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQALELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVITK----DSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLS 194
++ P M +T D++ + + E G G+ SHE+ + +++ LS
Sbjct: 124 RICSPPFMELTSLCGDDTMRLLE---ENGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLS 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFS 219
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| MGI|MGI:2446159 Itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 64/220 (29%), Positives = 112/220 (50%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K KL A L +GI V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKVK-----KLNFQAFAELCR-KRGIEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDD 123
Query: 139 KVRVPRQMVIT----KDSLSIPDQVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLS 194
++ P M +T +D++ + +Q G G+ SHE+ + +++ L+
Sbjct: 124 RICSPPFMELTSLCGEDTMRLLEQ---NGLAFPFICKTRVAHGT-NSHEMAIVFNQEGLN 179
Query: 195 ELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
++PP ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 180 AIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFS 219
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| UNIPROTKB|Q13572 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 63/218 (28%), Positives = 108/218 (49%)
Query: 31 VGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLS-- 88
VGY L+ KK K KL A L +G+ V ++ +RP+ +QGP DV++HKL+
Sbjct: 10 VGYWLSEKKIK-----KLNFQAFAELCR-KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDV 63
Query: 89 ----------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNG 138
+E ++Y HPE +LDP AI+ L +R + + + +
Sbjct: 64 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 123
Query: 139 KVRVPRQMVITKDSLSIPD--QVFEAGXXXXXXXXXXXXDGSAKSHELFLAYDRFSLSEL 196
++ P M +T SL D ++ E SHE+ + +++ L+ +
Sbjct: 124 RICSPPFMELT--SLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI 181
Query: 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVS 234
+PP ++Q F+NH +L+K++++GE+ VV+R SL N S
Sbjct: 182 QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFS 219
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SUG3 | ITPK2_ARATH | 2, ., 7, ., 1, ., 1, 5, 9 | 0.6985 | 0.9682 | 0.9490 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1.134 | 0.991 |
| 4th Layer | 2.7.1.159 | 0.991 |
| 3rd Layer | 2.7.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.V.4486.1 | hypothetical protein (319 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_IX2631 | hypothetical protein (348 aa) | • | • | • | 0.900 | |||||
 | gw1.XIX.770.1 | hypothetical protein (311 aa) | • | • | 0.899 | ||||||
 | gw1.III.1387.1 | hypothetical protein (309 aa) | • | • | 0.899 | ||||||
 | gw1.29.16.1 | hypothetical protein (315 aa) | • | • | 0.899 | ||||||
 | estExt_fgenesh4_pg.C_LG_V0044 | hypothetical protein (396 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 346 | |||
| PLN02941 | 328 | PLN02941, PLN02941, inositol-tetrakisphosphate 1-k | 0.0 | |
| pfam05770 | 307 | pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trispho | 1e-161 | |
| pfam13535 | 183 | pfam13535, ATP-grasp_4, ATP-grasp domain | 0.001 |
| >gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Score = 574 bits (1482), Expect = 0.0
Identities = 219/321 (68%), Positives = 253/321 (78%), Gaps = 9/321 (2%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPF 80
S Q +R VVGYALT KK KSFLQP LE LAR +KGI VAID +RPLS+QGPF
Sbjct: 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALAR------SKGIDLVAIDPSRPLSEQGPF 67
Query: 81 DVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKV 140
DV+LHKL G EW + +E+YR+KHP+VT+LDPPDAI+ LHNRQSMLQ VADL LSD G V
Sbjct: 68 DVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSV 127
Query: 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPM 200
VP+Q+V+ D SIPD V AGLK PLVAKPLV DGSAKSH++ LAYD+ LS+LEPP+
Sbjct: 128 GVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPL 187
Query: 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260
+LQEFVNHGG+LFK+Y++G+ +K VRRFSLP+VS+ EL+ V FPRVS+AAASADDA
Sbjct: 188 VLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDA 247
Query: 261 D---LDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYG 317
D LDP +AELPPRP LE LARELR RLGLRLFN DMIREHG D +YVIDINYFPGY
Sbjct: 248 DNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYA 307
Query: 318 KMPDYEHIFTDFLLSLEQSKC 338
KMP YE + TDFLLSL Q K
Sbjct: 308 KMPGYETVLTDFLLSLVQKKY 328
|
Length = 328 |
| >gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-161
Identities = 176/308 (57%), Positives = 226/308 (73%), Gaps = 8/308 (2%)
Query: 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHK 86
+R +VGYAL KK KSF+QP L LAR +GI V +D +RPLS+QGPFD+++HK
Sbjct: 6 KRYLVGYALAEKKIKSFIQPSLAELAR------KRGIDLVQLDPSRPLSEQGPFDIIIHK 59
Query: 87 LSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM 146
L+ EW +E++R+ HPEV +LDPP AI+ LHNRQSMLQ VADLNLS +G+ VP Q+
Sbjct: 60 LTDKEWRHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQV 119
Query: 147 VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFV 206
V+ KD+ S+ +AGL PL+AKPLV DG+AKSHE+ L YD+ L++L+PP++LQEFV
Sbjct: 120 VVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKLQPPLVLQEFV 179
Query: 207 NHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--P 264
NHGG+LFK+Y++GE + VV+R SLP+VS L + FRF +VS+ ASADDA+LD
Sbjct: 180 NHGGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKIL 239
Query: 265 GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEH 324
IAE+PP P LE LAR LR LGLRLFN D+IR+ G D + VIDINYFPGY KMP+YE
Sbjct: 240 EIAEMPPDPFLEDLARALRRALGLRLFNFDIIRDAGTADRYLVIDINYFPGYAKMPEYET 299
Query: 325 IFTDFLLS 332
+ TDF S
Sbjct: 300 VLTDFFWS 307
|
This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase. Length = 307 |
| >gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 31/185 (16%)
Query: 140 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH------ELFLAYDRF-S 192
+ VP ++ + + P+V KP GS EL A +
Sbjct: 17 LPVPPFFLVDDEE---DLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSAAELEAALAALAA 73
Query: 193 LSELEPPMLLQEFVNHGGILFKI--YIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRV 250
E L++E++ G + + + + + VS+ V
Sbjct: 74 EVEDTREYLVEEYI--DGDEYHVDGLVDDGELVFL------GVSRYLGPPPPDFSE--GV 123
Query: 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 310
+ S + L + R L ER+ + L R G +F+++ +++I
Sbjct: 124 ELGSVSPGEDPLPEAL-----RELAERVLKALGLRNG--VFHLEFFLTP--DGRPVLLEI 174
Query: 311 NYFPG 315
N PG
Sbjct: 175 NPRPG 179
|
This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| PF05770 | 307 | Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- | 100.0 | |
| PLN02941 | 328 | inositol-tetrakisphosphate 1-kinase | 100.0 | |
| COG0189 | 318 | RimK Glutathione synthase/Ribosomal protein S6 mod | 99.96 | |
| PRK10446 | 300 | ribosomal protein S6 modification protein; Provisi | 99.95 | |
| TIGR02144 | 280 | LysX_arch Lysine biosynthesis enzyme LysX. The fam | 99.95 | |
| TIGR00768 | 277 | rimK_fam alpha-L-glutamate ligases, RimK family. T | 99.94 | |
| PF08443 | 190 | RimK: RimK-like ATP-grasp domain; InterPro: IPR013 | 99.94 | |
| TIGR01380 | 312 | glut_syn glutathione synthetase, prokaryotic. This | 99.89 | |
| KOG1057 | 1018 | consensus Arp2/3 complex-interacting protein VIP1/ | 99.89 | |
| PRK01372 | 304 | ddl D-alanine--D-alanine ligase; Reviewed | 99.89 | |
| TIGR01205 | 315 | D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a | 99.88 | |
| PRK05246 | 316 | glutathione synthetase; Provisional | 99.87 | |
| PRK12458 | 338 | glutathione synthetase; Provisional | 99.87 | |
| TIGR03103 | 547 | trio_acet_GNAT GNAT-family acetyltransferase TIGR0 | 99.86 | |
| PRK14571 | 299 | D-alanyl-alanine synthetase A; Provisional | 99.85 | |
| PRK01966 | 333 | ddl D-alanyl-alanine synthetase A; Reviewed | 99.82 | |
| PRK14570 | 364 | D-alanyl-alanine synthetase A; Provisional | 99.82 | |
| PRK14569 | 296 | D-alanyl-alanine synthetase A; Provisional | 99.82 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.81 | |
| PRK02471 | 752 | bifunctional glutamate--cysteine ligase/glutathion | 99.8 | |
| PRK14572 | 347 | D-alanyl-alanine synthetase A; Provisional | 99.8 | |
| PRK14568 | 343 | vanB D-alanine--D-lactate ligase; Provisional | 99.79 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 99.77 | |
| PF07478 | 203 | Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In | 99.77 | |
| TIGR02291 | 317 | rimK_rel_E_lig alpha-L-glutamate ligase-related pr | 99.74 | |
| TIGR01435 | 737 | glu_cys_lig_rel glutamate--cysteine ligase/gamma-g | 99.71 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 99.7 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 99.65 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 99.64 | |
| COG1181 | 317 | DdlA D-alanine-D-alanine ligase and related ATP-gr | 99.63 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 99.62 | |
| PF13535 | 184 | ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A | 99.62 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 99.61 | |
| PRK07206 | 416 | hypothetical protein; Provisional | 99.57 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 99.56 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 99.54 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 99.53 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 99.53 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 99.51 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 99.48 | |
| PRK02186 | 887 | argininosuccinate lyase; Provisional | 99.48 | |
| PRK13790 | 379 | phosphoribosylamine--glycine ligase; Provisional | 99.47 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 99.44 | |
| PRK05586 | 447 | biotin carboxylase; Validated | 99.42 | |
| PRK08654 | 499 | pyruvate carboxylase subunit A; Validated | 99.42 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.4 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 99.4 | |
| PRK08463 | 478 | acetyl-CoA carboxylase subunit A; Validated | 99.39 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 99.39 | |
| PRK06524 | 493 | biotin carboxylase-like protein; Validated | 99.39 | |
| TIGR00514 | 449 | accC acetyl-CoA carboxylase, biotin carboxylase su | 99.38 | |
| PRK07178 | 472 | pyruvate carboxylase subunit A; Validated | 99.37 | |
| PRK05294 | 1066 | carB carbamoyl phosphate synthase large subunit; R | 99.37 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 99.36 | |
| TIGR01369 | 1050 | CPSaseII_lrg carbamoyl-phosphate synthase, large s | 99.36 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.34 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 99.33 | |
| PLN02257 | 434 | phosphoribosylamine--glycine ligase | 99.33 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 99.3 | |
| PRK06111 | 450 | acetyl-CoA carboxylase biotin carboxylase subunit; | 99.28 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 99.27 | |
| PF02655 | 161 | ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 | 99.26 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 99.26 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 99.23 | |
| PF15632 | 329 | ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa | 99.22 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 99.21 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 99.16 | |
| COG0439 | 449 | AccC Biotin carboxylase [Lipid metabolism] | 99.11 | |
| PF02750 | 203 | Synapsin_C: Synapsin, ATP binding domain; InterPro | 99.1 | |
| COG0458 | 400 | CarB Carbamoylphosphate synthase large subunit (sp | 99.02 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 98.98 | |
| PF02786 | 211 | CPSase_L_D2: Carbamoyl-phosphate synthase L chain, | 98.94 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 98.93 | |
| PF02955 | 173 | GSH-S_ATP: Prokaryotic glutathione synthetase, ATP | 98.92 | |
| PF14398 | 262 | ATPgrasp_YheCD: YheC/D like ATP-grasp | 98.83 | |
| COG1821 | 307 | Predicted ATP-utilizing enzyme (ATP-grasp superfam | 98.83 | |
| PF02222 | 172 | ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T | 98.65 | |
| PRK13277 | 366 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo | 98.62 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 98.61 | |
| PRK13278 | 358 | purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D | 98.59 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 98.59 | |
| COG2232 | 389 | Predicted ATP-dependent carboligase related to bio | 98.58 | |
| PF14397 | 285 | ATPgrasp_ST: Sugar-transfer associated ATP-grasp | 98.53 | |
| COG3919 | 415 | Predicted ATP-grasp enzyme [General function predi | 98.41 | |
| PF03133 | 292 | TTL: Tubulin-tyrosine ligase family; InterPro: IPR | 98.41 | |
| KOG0238 | 670 | consensus 3-Methylcrotonyl-CoA carboxylase, biotin | 98.26 | |
| ), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071 | 194 | GARS_A: Phosphoribosylglycinamide synthetase, ATP- | 98.12 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 98.05 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 97.99 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 97.88 | |
| KOG0369 | 1176 | consensus Pyruvate carboxylase [Energy production | 97.47 | |
| PF14305 | 239 | ATPgrasp_TupA: TupA-like ATPgrasp | 97.04 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 96.81 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 96.77 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 96.54 | |
| KOG2156 | 662 | consensus Tubulin-tyrosine ligase-related protein | 96.52 | |
| PF14243 | 130 | DUF4343: Domain of unknown function (DUF4343) | 95.42 | |
| KOG2157 | 497 | consensus Predicted tubulin-tyrosine ligase [Postt | 95.28 | |
| PF14403 | 445 | CP_ATPgrasp_2: Circularly permuted ATP-grasp type | 95.03 | |
| KOG0368 | 2196 | consensus Acetyl-CoA carboxylase [Lipid transport | 94.8 | |
| PF13549 | 222 | ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. | 93.69 | |
| PF08442 | 202 | ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 | 90.39 | |
| PF07065 | 299 | D123: D123; InterPro: IPR009772 This family contai | 89.28 | |
| KOG0237 | 788 | consensus Glycinamide ribonucleotide synthetase (G | 87.85 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 87.37 | |
| PHA02117 | 397 | glutathionylspermidine synthase domain-containing | 86.57 | |
| COG1759 | 361 | 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu | 81.01 |
| >PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-88 Score=643.73 Aligned_cols=301 Identities=53% Similarity=0.955 Sum_probs=249.5
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCC
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE 105 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~ 105 (346)
+++++|||||++||+++|+|++|+.+|+ ++||+|++||+++||++|||||+||||+|+..|.+.+++|.++||+
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~------~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~ 78 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLAR------SRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPE 78 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCC------CCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TT
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHH------hcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
++||||+++|++++||.+|++.|.++........|++|+++++.++.+++.+.+.+++|+||+||||++||||++||.|+
T Consensus 79 v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Ma 158 (307)
T PF05770_consen 79 VVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMA 158 (307)
T ss_dssp SEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEE
T ss_pred eEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEE
Confidence 99999999999999999999999998776666799999999997666777788889999999999999999999999999
Q ss_pred EEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCC--
Q 019076 186 LAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD-- 263 (346)
Q Consensus 186 lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~-- 263 (346)
||+++++|+++++|||+||||||+|++|||||||++++++.|+|+||++.++.....+.|+|+++|+.++.+..+.++
T Consensus 159 ivf~~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~ 238 (307)
T PF05770_consen 159 IVFNEEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKD 238 (307)
T ss_dssp EE-SGGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-
T ss_pred EEECHHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccC
Confidence 999999999999999999999999999999999999999999999999877665566889999999988777665555
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHHHHH
Q 019076 264 PGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLS 332 (346)
Q Consensus 264 ~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~ 332 (346)
+...++|+.++++++|.++|++|||+|||||||++++|+++||||||||||||+|||+|++.|+++|++
T Consensus 239 ~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 239 PSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred cccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 455678889999999999999999999999999999996689999999999999999999999999974
|
Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X. |
| >PLN02941 inositol-tetrakisphosphate 1-kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-80 Score=594.81 Aligned_cols=309 Identities=71% Similarity=1.121 Sum_probs=282.2
Q ss_pred CCCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHh
Q 019076 23 VLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 23 ~~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
.+.+++++|||||++||++||+|++|+++|+ ++||++++||+++||++|||||+||||++++.|++.+++|..+
T Consensus 16 ~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~------~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e 89 (328)
T PLN02941 16 SSQQKRFVVGYALTPKKVKSFLQPSLEALAR------SKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREK 89 (328)
T ss_pred cccCCceEEEEEECHHHHHHHhhHHHHHHHH------HCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
|||++||||+++|++|+||+.|+++|.+++++.+..+|++|+|+++.+...++......++++||+|+||++||||++||
T Consensus 90 ~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh 169 (328)
T PLN02941 90 HPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSH 169 (328)
T ss_pred CCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCcccc
Confidence 99999999999999999999999999999888777889999999997544334344567899999999999999999999
Q ss_pred eeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCC-
Q 019076 183 ELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD- 261 (346)
Q Consensus 183 ~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~- 261 (346)
+|++|+++++|..+++|+++||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+++++.++.+..+.
T Consensus 170 ~m~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~ 249 (328)
T PLN02941 170 KMSLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADN 249 (328)
T ss_pred ceEEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999997544444557899999998877665554
Q ss_pred --CCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHHHHHHHHhh
Q 019076 262 --LDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 262 --~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~~ 337 (346)
++|...++|+++++++||.+++++||++|||||||++.+++++|+||||||||||+|||+|+..|+|||+++++++
T Consensus 250 ~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~ 327 (328)
T PLN02941 250 GGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKK 327 (328)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcC
Confidence 5555567888889999999999999999999999999777678999999999999999999999999999999876
|
|
| >COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=235.71 Aligned_cols=229 Identities=21% Similarity=0.269 Sum_probs=162.2
Q ss_pred HhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHh
Q 019076 52 ARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 52 ~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~ 130 (346)
.++++..+..++.+..+.... ...-..+|++|.|.+..... -.+.+. .+.-|++||||+++|..|.||+.+++.|..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~i~~R~~~~~~~~~~~~~~-~E~~G~~viN~p~~i~~~~nK~~~~~~l~~ 129 (318)
T COG0189 52 ARLVEVGEVIGLHYELIEEED-LSLLDELDVIIMRKDPPFDFATRFLRL-AERKGVPVINDPQSIRRCRNKLYTTQLLAK 129 (318)
T ss_pred HHhhhhhhccccccccccccc-cchhccCCEEEEecCCchhhHHHHHHH-HHHcCCeEECCHHHHHhhhhHHHHHHHHHh
Confidence 333333334455554443332 22334899999999874332 112222 245789999999999999999999999996
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChh-hhhcc--------CCCeE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPML 201 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~-~L~~l--------~~p~v 201 (346)
+++|+|+|+++.+ ...... .....++||+|+||+. || ++.++.++.+.+ +|.++ ..+++
T Consensus 130 -------~~ipvP~T~i~~~-~~~~~~-~~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~i 197 (318)
T COG0189 130 -------AGIPVPPTLITRD-PDEAAE-FVAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLII 197 (318)
T ss_pred -------cCCCCCCEEEEcC-HHHHHH-HHHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEe
Confidence 6899999999963 333323 3566799999999998 76 899999999998 76654 23699
Q ss_pred EEecccCCCeEEEEEEECCEEE-E--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHH
Q 019076 202 LQEFVNHGGILFKIYIIGETIK-V--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERL 278 (346)
Q Consensus 202 ~QEfI~h~G~~~KV~VvG~~v~-~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~l 278 (346)
+||||+..+++.|.+++||... + ++++-.. .++|++| .+.++..++ .+..+++++|
T Consensus 198 vQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~---~~~~R~N--------------~a~Gg~~e~----~~l~~e~~el 256 (318)
T COG0189 198 VQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA---SGDFRSN--------------LARGGRAEP----CELTEEEEEL 256 (318)
T ss_pred hhhhcCcccCCcEEEEEeCCEEeEEeeeccccC---CCCceee--------------ccccccccc----cCCCHHHHHH
Confidence 9999999987777777766644 4 2233111 1355544 222444433 2234668999
Q ss_pred HHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 279 ARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 279 A~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
|.+++++||+.++||||+++. +++||+|||..|++++
T Consensus 257 A~kaa~~lGl~~~GVDiie~~---~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 257 AVKAAPALGLGLVGVDIIEDK---DGLYVTEVNVSPTGKG 293 (318)
T ss_pred HHHHHHHhCCeEEEEEEEecC---CCcEEEEEeCCCcccc
Confidence 999999999999999999873 3699999999998876
|
|
| >PRK10446 ribosomal protein S6 modification protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=224.01 Aligned_cols=246 Identities=15% Similarity=0.197 Sum_probs=171.6
Q ss_pred hhhcccccCCcEEEEecCCCC---CC-----------CCCCccEEEEcccch--hhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 53 RYILTHTNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 53 r~~~~~~~~Gi~~v~id~~~~---l~-----------~q~~fDvilhK~t~~--~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++.++++++|++++.+|+++. +. ...++|++|.+..+. ......++.++. .|+.++|++.++.
T Consensus 17 ~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~-~g~~v~n~~~a~~ 95 (300)
T PRK10446 17 RLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEM-LGSYPLNESVAIA 95 (300)
T ss_pred HHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHH-CCCceecCHHHHH
Confidence 334444499999999998752 11 123789999987652 222333444443 4688999999999
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE- 195 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~- 195 (346)
.|.||..+.+.|.+ ++||+|++.++. +.+.+.+. .....+||+|+||.. |+ +|.++.++.+.+++..
T Consensus 96 ~~~dK~~~~~~l~~-------~gip~P~t~~~~-~~~~~~~~-~~~~~~~P~VvKP~~--g~-~g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLAR-------QGIDLPVTGIAH-SPDDTSDL-IDMVGGAPLVVKLVE--GT-QGIGVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHHH-HHHhCCCCEEEEECC--CC-CcccEEEEcCHHHHHHH
Confidence 99999999999996 689999998874 22222222 222237999999997 44 6899999999877653
Q ss_pred ------cCCCeEEEecccC-CCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 196 ------LEPPMLLQEFVNH-GGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 196 ------l~~p~v~QEfI~h-~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
++.++++||||++ .|++++|+|+|+++..+ .|.+.. ++|.++ .+. ++...+
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~----~~~~~n--------~~~------g~~~~~--- 222 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE----GDFRSN--------LHR------GGAASV--- 222 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC----Cchhhe--------ecc------CCeecc---
Confidence 3568999999987 49999999999997654 443322 133322 111 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc-----HHHHHHHHHHHHHh
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY-----EHIFTDFLLSLEQS 336 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~-----~~~l~~~l~~~i~~ 336 (346)
.+..+.++++|.++.++||+.++|||++.+. . ++||+|||..|||+++... .+.+.+++.+.++.
T Consensus 223 -~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~--g~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~ 292 (300)
T PRK10446 223 -ASITPQEREIAIKAARTMALDVAGVDILRAN-R--GPLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATT 292 (300)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEEEEEEcC-C--CcEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhccc
Confidence 1124568999999999999999999999864 2 3789999999999887653 44555555555433
|
|
| >TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=214.44 Aligned_cols=243 Identities=19% Similarity=0.267 Sum_probs=174.4
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC-------CCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS-------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~-------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.+.+.++ ++|+++..+++++... +..++|++|.|.........+....+ .-|++++||+++++.+
T Consensus 13 ~~l~~al~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le-~~g~~~~n~~~~~~~~ 85 (280)
T TIGR02144 13 KMLIEELE------KLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLE-ALGVPVINSSHVIEAC 85 (280)
T ss_pred HHHHHHHH------HcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHH-HCCCcEECcHHHHHHH
Confidence 34555666 9999999987765221 23578999998544222122333333 3579999999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..+++.|++ ++||+|++..+. +...+.+ ....++||+|+||.. |+ +++++.++.+.+++.++
T Consensus 86 ~dK~~~~~~l~~-------~gip~P~t~~~~-~~~~~~~--~~~~~~~P~vvKP~~--g~-~g~gv~~v~~~~~l~~~~~ 152 (280)
T TIGR02144 86 GDKIFTYLKLAK-------AGVPTPRTYLAF-DREAALK--LAEALGYPVVLKPVI--GS-WGRLVALIRDKDELESLLE 152 (280)
T ss_pred hhHHHHHHHHHH-------CCcCCCCeEeeC-CHHHHHH--HHHHcCCCEEEEECc--CC-CcCCEEEECCHHHHHHHHH
Confidence 999999999886 589999999874 2222222 234589999999987 54 57899999999886541
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
..++++||||++.|++++++|+|+++. ++.|.+ .++ ..+. +. ++...|
T Consensus 153 ~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~-----~~~~--------~~------g~~~~~-- 210 (280)
T TIGR02144 153 HKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHW-----RTNT--------AR------GGKAEP-- 210 (280)
T ss_pred HHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cch-----hhhh--------hc------CCceec--
Confidence 257999999997799999999999975 455554 222 2111 00 111111
Q ss_pred CCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc-----ccHHHHHHHHHHHH
Q 019076 267 AELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP-----DYEHIFTDFLLSLE 334 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~-----~~~~~l~~~l~~~i 334 (346)
.+..+.++++|.++.+++|+.++|||++.+.+ | .+||+|||..|||.++. ++...+.+++.+++
T Consensus 211 --~~~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 211 --CPLDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred --cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 12245689999999999999999999998743 3 59999999999999864 44677777776655
|
The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. |
| >TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=205.61 Aligned_cols=231 Identities=19% Similarity=0.289 Sum_probs=166.6
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCC---CCC----CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRP---LSD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~---l~~----q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.+.+.++ ++|+++..++++.. +.. ...+|+++.|.........+.+..+. -+++++|+++++..+
T Consensus 14 ~~l~~a~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~ 86 (277)
T TIGR00768 14 KMLKEAAE------ELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNA 86 (277)
T ss_pred HHHHHHHH------HcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHH
Confidence 45666666 99999999988642 221 34689999998432222344444444 478999999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..+++.|++ .+|++|++..+. +.+++.+. ...++||+|+||.. |+ .|.++.++.+.+++..+
T Consensus 87 ~dK~~~~~~l~~-------~gi~~P~t~~~~-~~~~~~~~--~~~~~~p~vvKP~~--g~-~g~gv~~i~~~~~l~~~~~ 153 (277)
T TIGR00768 87 GDKFLTSQLLAK-------AGLPQPRTGLAG-SPEEALKL--IEEIGFPVVLKPVF--GS-WGRLVSLARDKQAAETLLE 153 (277)
T ss_pred hhHHHHHHHHHH-------CCCCCCCEEEeC-CHHHHHHH--HHhcCCCEEEEECc--CC-CCCceEEEcCHHHHHHHHH
Confidence 999999999996 589999999885 33333222 24578999999998 43 46899999999887542
Q ss_pred -----C---CCeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 197 -----E---PPMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 197 -----~---~p~v~QEfI~h~-G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
. .++++||||++. |.+++|+|+|+++..+.++..+ ++|.++ .+. ++...+
T Consensus 154 ~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~------g~~~~~--- 212 (277)
T TIGR00768 154 HFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LAR------GGKAEP--- 212 (277)
T ss_pred HHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhc------CCeeee---
Confidence 2 379999999977 4899999999998765444321 123221 111 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+..++++++|.+++++||+.++|||++++. +| ++||+|||..||+.++.
T Consensus 213 -~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 213 -CPLTEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSV 262 (277)
T ss_pred -cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhH
Confidence 1123568999999999999999999999975 34 69999999999998764
|
This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). |
| >PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=204.03 Aligned_cols=168 Identities=28% Similarity=0.457 Sum_probs=97.8
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||+.++++|++ ++||+|+|.++.+ .+.+.+.+...+ +||+|+||+. |+ .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~-------~gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~--g~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAK-------AGIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLR--GS-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHH-------TT-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCC--CC-CCCEEEEecCHHHHHHHHH
Confidence 589999999997 6899999999853 334444444443 8999999987 44 68899999999887653
Q ss_pred -----CCCeEEEecccCCC-eEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC
Q 019076 197 -----EPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 270 (346)
Q Consensus 197 -----~~p~v~QEfI~h~G-~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p 270 (346)
+.++++|+||++.+ +++||+|||++++.+.+++.++ ++|+++ .+. ++..++ ..
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~~~------g~~~~~----~~ 128 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------LSR------GGKVEP----YD 128 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------hcc------CceEEE----ec
Confidence 57999999999885 9999999999998766655443 245543 111 222222 11
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 271 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 271 ~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
..+++.++|.+++++||++++|||++..+ +++||+|||.+|||++++..
T Consensus 129 l~~e~~~~a~~~~~~lgl~~~giDi~~~~---~~~~v~EvN~~~~~~~~~~~ 177 (190)
T PF08443_consen 129 LPEEIKELALKAARALGLDFAGIDILDTN---DGPYVLEVNPNPGFRGIEEA 177 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET---TEEEEEEEETT---TTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEEecC---CCeEEEEecCCchHhHHHHH
Confidence 23568999999999999999999977653 36999999999999998664
|
It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A. |
| >TIGR01380 glut_syn glutathione synthetase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=190.40 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=151.4
Q ss_pred ccccCCcEEEEecCCCCCC---------------C---------------CCCccEEEEcccchh-----hHHHHHHHHH
Q 019076 57 THTNKGISFVAIDQNRPLS---------------D---------------QGPFDVVLHKLSGME-----WCKIIEDYRQ 101 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~---------------~---------------q~~fDvilhK~t~~~-----~~~~l~~y~~ 101 (346)
++.++|+++..+++++... + ...||++|.|-.... ....+.++.+
T Consensus 26 aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le 105 (312)
T TIGR01380 26 EAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLLELAD 105 (312)
T ss_pred HHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHHHHHH
Confidence 3339999999888864210 0 136899999974321 1223444444
Q ss_pred hCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 102 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 102 ~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
. -|+.|+||+++++.+.||.++++.+. ++|+|++.. +...+.+.+.. .+ |+|+||+. |+ ++
T Consensus 106 ~-~g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~--~g-~vVvKPl~--G~-~G 166 (312)
T TIGR01380 106 P-TGTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAE--HG-DIVLKPLD--GM-GG 166 (312)
T ss_pred h-CCCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHH--cC-CEEEEECC--CC-CC
Confidence 3 57999999999999999998766531 699999764 34334333332 34 99999998 55 67
Q ss_pred eeeEEEeCh-hhh-------hcc-CCCeEEEecccC-CCeEEEEEEECCEEEE--EEeecCCCcccchhhcccceeeccc
Q 019076 182 HELFLAYDR-FSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 182 h~m~lv~~~-~~L-------~~l-~~p~v~QEfI~h-~G~~~KV~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
+++.++.+. ..+ ..+ ..|+++|+||+. .+.|+||+|+|++++. +.|.+.+ ++|++|
T Consensus 167 ~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~----gd~r~N-------- 234 (312)
T TIGR01380 167 EGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG----GEFRGN-------- 234 (312)
T ss_pred ceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC----CCcccc--------
Confidence 889988652 222 222 468999999986 3679999999999764 4454433 244433
Q ss_pred ccccccccCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEecCcCCeEEEEeccCC--CCCCCCccc--
Q 019076 250 VSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMRDVFYVIDINYF--PGYGKMPDY-- 322 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~lfGvDvi~~~~~g~~~~ViDVN~f--Pg~~gv~~~-- 322 (346)
++. ++...+ .++.++..++|.+++ +++|+.+.|||+| + ++|+|||.. +||.++...
T Consensus 235 ~~~------Gg~~~~----~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---g----~~v~EvN~~~p~~~~~~~~~~g 297 (312)
T TIGR01380 235 LAV------GGRGEA----TELSERDREICADVAPELKRRGLLFVGIDVI---G----GYLTEVNVTSPTGIREIDRQKG 297 (312)
T ss_pred ccC------Cceeec----cCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---C----CEEEEEecCCcchHHHHHhhhC
Confidence 111 222222 122355789999988 6779999999999 2 369999975 589777543
Q ss_pred ---HHHHHHHHHH
Q 019076 323 ---EHIFTDFLLS 332 (346)
Q Consensus 323 ---~~~l~~~l~~ 332 (346)
...+.+++.+
T Consensus 298 ~~ia~~i~d~l~~ 310 (312)
T TIGR01380 298 VNIAGMLWDAIEK 310 (312)
T ss_pred CCHHHHHHHHHHh
Confidence 4555555544
|
This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. |
| >KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=203.63 Aligned_cols=263 Identities=21% Similarity=0.294 Sum_probs=193.9
Q ss_pred CCcEEEEEEecccccccc-cchHHHHHHhhhcccccCCcEEEE----ecCCCCCCCCCCccEEEEcccchhhHHHHHHHH
Q 019076 26 PERLVVGYALTSKKKKSF-LQPKLEILARYILTHTNKGISFVA----IDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYR 100 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~-~~~~~~~~~r~~~~~~~~Gi~~v~----id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~ 100 (346)
.+..+||.|.+.||.+|- .+.-+.+++. -.-|+++. +-++.|++.|+-+||+|.-.+...-....++|+
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~------f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~ 111 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLIL------FKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYA 111 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHh------cceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHH
Confidence 345799999999996553 3344555665 22344433 346889999999999999998877788899998
Q ss_pred Hh-CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh-hhHH---------HhhCCCCcEE
Q 019076 101 QK-HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI-PDQV---------FEAGLKLPLV 169 (346)
Q Consensus 101 ~~-~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~-~~~l---------~~~~l~fPvV 169 (346)
+. +| .|||.+..++.++||...|++|+. .||++|+..++.++..+- ...+ .-..+.-|+|
T Consensus 112 kLRnP--FviNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFV 182 (1018)
T KOG1057|consen 112 KLRNP--FVINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFV 182 (1018)
T ss_pred HhcCC--eeeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcc
Confidence 74 45 889999999999999999999996 699999999887654321 1111 1123567999
Q ss_pred EecCcCCCCCCceeeEEEeChhh-------hhcc---------------CCCeEEEecccCCCeEEEEEEECCEE-EEEE
Q 019076 170 AKPLVVDGSAKSHELFLAYDRFS-------LSEL---------------EPPMLLQEFVNHGGILFKIYIIGETI-KVVR 226 (346)
Q Consensus 170 vKP~~a~GS~~sh~m~lv~~~~~-------L~~l---------------~~p~v~QEfI~h~G~~~KV~VvG~~v-~~~~ 226 (346)
-||+. | +.|+++|.+.... |+++ ...++.+||++++|.|.|||.||..+ ++-.
T Consensus 183 EKPVs--~--EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEa 258 (1018)
T KOG1057|consen 183 EKPVS--A--EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEA 258 (1018)
T ss_pred cCCCC--c--ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhh
Confidence 99997 3 6899999998632 4443 24699999999999999999999996 5678
Q ss_pred eecCCCcccchhhcccc-eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeE
Q 019076 227 RFSLPNVSKRELAKVVS-VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVF 305 (346)
Q Consensus 227 R~Slp~~~~~~~~~~~g-~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~ 305 (346)
|+| |-++.-..+..+| ..+|+.+ ..+..+.+|.+++-+++..++|||+++.+| .-
T Consensus 259 RKS-PvvDGkV~Rns~GKEvRYpv~--------------------Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G---~S 314 (1018)
T KOG1057|consen 259 RKS-PVVDGKVERNSDGKEVRYPVI--------------------LNSSEKQIARKVCIAFKQTVCGFDLLRANG---KS 314 (1018)
T ss_pred ccC-ccccceeeecCCCceeeceee--------------------cChhhHHHHhHHHhhccccccchHHhhcCC---ce
Confidence 888 5553211111111 1222221 123458899999999999999999999764 67
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHH
Q 019076 306 YVIDINYFPGYGKMPDYEHIFTDFLL 331 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~~~~~~l~~~l~ 331 (346)
||||||.|.-.++...|+.-.+..|-
T Consensus 315 YVcDVNGfSFVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 315 YVCDVNGFSFVKNSNKYYDDCAKILG 340 (1018)
T ss_pred EEEeccceeeeecchhhhHHHHHHHh
Confidence 99999999999998888765555444
|
|
| >PRK01372 ddl D-alanine--D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=181.41 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=161.0
Q ss_pred ccccCCcEEEEecCCCCCCC---CCCccEEEEcccchh-hHHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhc
Q 019076 57 THTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADL 131 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~-~~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l 131 (346)
+.+++|++++.|+.+..+.+ ...+|+||....+.. ....++.+.+. -+++++.+ +.++..|.||..+.+.|.+
T Consensus 31 al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~- 108 (304)
T PRK01372 31 ALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIPYTGSGVLASALAMDKLRTKLVWQA- 108 (304)
T ss_pred HHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-
Confidence 33489999999998866654 457899999864421 11345666655 48999876 7999999999999999986
Q ss_pred cccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEe
Q 019076 132 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQE 204 (346)
Q Consensus 132 ~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QE 204 (346)
.+|++|++..+.. .+.... ....++||+|+||..+. +|.++.++.+.+++.+. ..++++||
T Consensus 109 ------~gIp~p~~~~~~~-~~~~~~--~~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe 176 (304)
T PRK01372 109 ------AGLPTPPWIVLTR-EEDLLA--AIDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYDDEVLVEK 176 (304)
T ss_pred ------CCCCCCCEEEEeC-cchHHH--HHhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 5899999998853 222222 23568999999999844 46889999999887542 56899999
Q ss_pred cccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHH
Q 019076 205 FVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLAREL 282 (346)
Q Consensus 205 fI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l 282 (346)
||+ |++|.|.|+|+++....+....+ +.++|......+.. ..+..+++ ...+.++++|.++
T Consensus 177 ~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~p~~~~~-----~~~~~l~~~a~~~ 239 (304)
T PRK01372 177 YIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEAKYLAGGTQYICPAGLPA-----EIEAELQELALKA 239 (304)
T ss_pred ccC--CEEEEEEEECCCccceEEEEecC----------CEEeeeccccCCCeEEEeCCCCCH-----HHHHHHHHHHHHH
Confidence 996 99999999999865333222111 12222221111100 00111111 1134578999999
Q ss_pred HHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 283 RHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 283 ~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++||+. +++||++.+. +| ++||+|||..||+.+-
T Consensus 240 ~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~~~ 275 (304)
T PRK01372 240 YRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMTSH 275 (304)
T ss_pred HHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCCcc
Confidence 9999995 6679999985 34 6999999999999764
|
|
| >TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=179.81 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=160.5
Q ss_pred HHHHhhhcccccCCcEEEEecCCCC-------CC--------CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-
Q 019076 49 EILARYILTHTNKGISFVAIDQNRP-------LS--------DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP- 111 (346)
Q Consensus 49 ~~~~r~~~~~~~~Gi~~v~id~~~~-------l~--------~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp- 111 (346)
....+...+.+++|++++.|+.+.. +. ....+|+|+.-+.+... ...++...+. -|++++++
T Consensus 18 ~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gip~~g~~ 96 (315)
T TIGR01205 18 VSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLEL-MGIPYTGSG 96 (315)
T ss_pred HHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHH-cCCCccCCC
Confidence 3344444455689999999998761 11 11468999986543211 1245555544 57999886
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhH---HHhhCCCCcEEEecCcCCCCCCceeeEEEe
Q 019076 112 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ---VFEAGLKLPLVAKPLVVDGSAKSHELFLAY 188 (346)
Q Consensus 112 ~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~---l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~ 188 (346)
+.++..|.||..+.+.|.+ ++|++|++.++..+.....+. .....++||+|+||..++ +|.++.++.
T Consensus 97 ~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~ 166 (315)
T TIGR01205 97 VLASALSMDKLLTKLLWKA-------LGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVK 166 (315)
T ss_pred HHHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEEC
Confidence 8999999999999999996 689999999885222221110 112468999999998743 468899999
Q ss_pred Chhhhhcc-------CCCeEEEecccCCCeEEEEEEEC-CEEE-EEEeecCCCcccchhhcccceeeccccccccc--cc
Q 019076 189 DRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIG-ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA--SA 257 (346)
Q Consensus 189 ~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG-~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~--~~ 257 (346)
|.++|... ..++++||||+ |++|.|.|+| ++.. ++.+.... ..+++|......+. ..
T Consensus 167 ~~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 234 (315)
T TIGR01205 167 SEEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYV 234 (315)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEE
Confidence 99888643 56899999994 9999999999 4432 22211100 00122221111000 00
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 258 DDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 258 ~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+..+++ ...+.++++|.++.++||+ ++++||++++. .| ++||+|||..||+....
T Consensus 235 ~p~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 235 IPAPLDE-----ELEEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred eCCCCCH-----HHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCCcc
Confidence 1111211 1135689999999999999 68899999985 33 69999999999998643
|
but a number of antibiotic resistance proteins score above the trusted cutoff of this model. |
| >PRK05246 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=185.03 Aligned_cols=235 Identities=17% Similarity=0.239 Sum_probs=156.6
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCC---------------C---------------CCCccEEEEcccchh-----
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLS---------------D---------------QGPFDVVLHKLSGME----- 91 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~---------------~---------------q~~fDvilhK~t~~~----- 91 (346)
.+.+.|+ ++|+++..+++++-.. . ...||+|+.|.....
T Consensus 23 ~l~~aa~------~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~ 96 (316)
T PRK05246 23 AMMLEAQ------RRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYI 96 (316)
T ss_pred HHHHHHH------HcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHH
Confidence 3555566 9999998887753110 0 124899999964321
Q ss_pred hHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEe
Q 019076 92 WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAK 171 (346)
Q Consensus 92 ~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvK 171 (346)
....+.+.++. .+++++|++++++.+.||+.+++.+. ++|+|.+.. +.+.+.+.+.. .+ |+|+|
T Consensus 97 ~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~--~~-~vVlK 160 (316)
T PRK05246 97 YATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAE--HG-DIILK 160 (316)
T ss_pred HHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHH--CC-CEEEE
Confidence 22334444444 48999999999999999998776532 689998764 33333333333 33 99999
Q ss_pred cCcCCCCCCceeeEEEeC-hhhh-------hcc-CCCeEEEecccCC-CeEEEEEEECCEEEE--EEeecCCCcccchhh
Q 019076 172 PLVVDGSAKSHELFLAYD-RFSL-------SEL-EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRFSLPNVSKRELA 239 (346)
Q Consensus 172 P~~a~GS~~sh~m~lv~~-~~~L-------~~l-~~p~v~QEfI~h~-G~~~KV~VvG~~v~~--~~R~Slp~~~~~~~~ 239 (346)
|+. |+ ++.++.++.. ..++ ... ..|+++|+||+.. +.|+||+|+|+++.+ +.|.+.. ++|+
T Consensus 161 P~~--G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~----~~~r 233 (316)
T PRK05246 161 PLD--GM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAG----GETR 233 (316)
T ss_pred ECC--CC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCC----CCcc
Confidence 998 55 6788998854 3322 222 4699999999865 679999999999875 4554432 2444
Q ss_pred cccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEecCcCCeEEEEeccCC-C-
Q 019076 240 KVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMRDVFYVIDINYF-P- 314 (346)
Q Consensus 240 ~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~---~~lGl~lfGvDvi~~~~~g~~~~ViDVN~f-P- 314 (346)
+| ++. ++...+ .+..+...++|.+++ +.+|+.++|||++ + . ||+|||.+ |
T Consensus 234 tN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---~---~-~l~EvN~~~p~ 288 (316)
T PRK05246 234 GN--------LAA------GGRGEA----TPLTERDREICAAIGPELKERGLIFVGIDVI---G---D-YLTEINVTSPT 288 (316)
T ss_pred cC--------ccC------CceEec----cCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---C---C-EEEEEeCCCch
Confidence 33 222 222222 112355789998888 5779999999999 2 2 59999976 6
Q ss_pred CCCCCccc-----HHHHHHHHHHHHH
Q 019076 315 GYGKMPDY-----EHIFTDFLLSLEQ 335 (346)
Q Consensus 315 g~~gv~~~-----~~~l~~~l~~~i~ 335 (346)
||.+++.. +..+.+++.+.+.
T Consensus 289 ~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 289 GIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 88888654 5667777666554
|
|
| >PRK12458 glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=184.86 Aligned_cols=215 Identities=17% Similarity=0.227 Sum_probs=144.6
Q ss_pred CccEEEEcccch---hhHHHHHH------HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc
Q 019076 79 PFDVVLHKLSGM---EWCKIIED------YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 149 (346)
Q Consensus 79 ~fDvilhK~t~~---~~~~~l~~------y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~ 149 (346)
.||+|++|-... .....+.. ...+..+++++|++++++.+.||..+++ |. .+++|+|++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~---------~~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FP---------EEVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hc---------cCCCCCEEEeC
Confidence 589999996432 22333332 1223468999999999999999998754 33 15799998774
Q ss_pred cCCCChhhHHHhhCCCC-cEEEecCcCCCCCCceeeEEEeChhh--hhcc------CCCeEEEecccCC-CeEEEEEEEC
Q 019076 150 KDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFS--LSEL------EPPMLLQEFVNHG-GILFKIYIIG 219 (346)
Q Consensus 150 ~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS~~sh~m~lv~~~~~--L~~l------~~p~v~QEfI~h~-G~~~KV~VvG 219 (346)
+.+.+.+.+ ...++ |+|+||+. |+ +++++.++.+.+. +..+ ..++++||||+.. +.++||+|+|
T Consensus 149 -~~~~~~~~~--~~~~~~pvVvKPl~--G~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~ 222 (338)
T PRK12458 149 -NKEYIREFL--EESPGDKMILKPLQ--GS-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLN 222 (338)
T ss_pred -CHHHHHHHH--HHcCCCeEEEEECC--CC-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEEC
Confidence 333333322 23444 59999998 54 6789999986653 3221 4689999999863 6799999999
Q ss_pred CEEE------EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh---CCcE
Q 019076 220 ETIK------VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL---GLRL 290 (346)
Q Consensus 220 ~~v~------~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l---Gl~l 290 (346)
++++ ++.++.... ++|++| .+. ++...+ .++.+..+++|.++..+| ||.+
T Consensus 223 g~~v~~~g~~~a~~R~~~~---~d~RsN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~GL~~ 281 (338)
T PRK12458 223 GEPLERDGHYAAMRRVPAG---GDVRSN--------VHA------GGSVVK----HTLTKEELELCEAIRPKLVRDGLFF 281 (338)
T ss_pred CEEEeeccceeEEEEecCC---CCeeec--------ccC------CCcccC----cCCCHHHHHHHHHHHHHHhhcCCeE
Confidence 9988 655543221 244432 111 222222 123456899999999988 9999
Q ss_pred eEEEEEEecCcCCeEEEEeccC-CC-CCCCC-----cccHHHHHHHHHHHHHhh
Q 019076 291 FNIDMIREHGMRDVFYVIDINY-FP-GYGKM-----PDYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 291 fGvDvi~~~~~g~~~~ViDVN~-fP-g~~gv-----~~~~~~l~~~l~~~i~~~ 337 (346)
.|||+| + .+|+|||. +| |+.++ .|+...+.+++.+.+..+
T Consensus 282 ~gVDli---~----~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~~ 328 (338)
T PRK12458 282 VGLDIV---G----DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQRK 328 (338)
T ss_pred EeEEEE---C----CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhHH
Confidence 999999 2 15899998 78 55543 345678888888877554
|
|
| >TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=189.40 Aligned_cols=244 Identities=16% Similarity=0.199 Sum_probs=156.7
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCC-CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~-~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~ 124 (346)
..+++.|+ ++|++++.+|.+..+-.-+ .-+.++.+ .....++++.++..|.||..+
T Consensus 245 ~~Ii~~a~------~~Gi~~~~~~se~~~~~L~~g~~~~~~~-----------------~s~~~~~s~~ai~~~~DK~~t 301 (547)
T TIGR03103 245 RIIVDEAR------RRGIEVEVLDAEGGLFRLSLGGRSIRCR-----------------ESLSELTSAVAMSLCDDKRLT 301 (547)
T ss_pred HHHHHHHH------HcCCcEEEECCCCCEEEecCCceEEEEE-----------------eccCCCCCHHHHHHhcCHHHH
Confidence 45666777 9999999987554221100 01111111 122367799999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-EeChhhhhcc-------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSEL------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v~~~~~L~~l------- 196 (346)
.++|++ +|||+|++.++. +.+.+.+.. ..++ |+|+||.. |+ ++.+|.+ +.++++|.+.
T Consensus 302 k~lL~~-------aGIpVP~~~~~~-~~~~~~~~~--~~~G-~vVVKP~~--G~-~G~Gv~v~v~~~~eL~~a~~~a~~~ 367 (547)
T TIGR03103 302 RRLVSE-------AGLQVPEQQLAG-NGEAVEAFL--AEHG-AVVVKPVR--GE-QGKGISVDVRTPDDLEAAIAKARQF 367 (547)
T ss_pred HHHHHH-------cCcCCCCEEEEC-CHHHHHHHH--HHhC-CEEEEECC--CC-CCcCeEEecCCHHHHHHHHHHHHhc
Confidence 999996 589999999885 333333322 2355 79999987 54 6899997 8999887642
Q ss_pred CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchh---h-----cc-------cce-----------------
Q 019076 197 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL---A-----KV-------VSV----------------- 244 (346)
Q Consensus 197 ~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~---~-----~~-------~g~----------------- 244 (346)
...+++|+|| .|.++|++|||++++++.++-.+.+-.+.. . .| ++.
T Consensus 368 ~~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 368 CDRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred CCcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 4589999999 599999999999998755443343211100 0 00 000
Q ss_pred eecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 245 FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 245 ~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+++.+|...+ ..+.++.... ++. ...+...++|.++++++||.+.|||+|.++-++..++|||||..||
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg~~~d-vtd-~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pg 523 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGGTIHD-VTE-QLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPG 523 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCCeeEe-ccc-ccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCcc
Confidence 1111111100 0011222111 011 1345689999999999999999999999754444689999999999
Q ss_pred CCCCc--ccHHHHHHHH
Q 019076 316 YGKMP--DYEHIFTDFL 330 (346)
Q Consensus 316 ~~gv~--~~~~~l~~~l 330 (346)
+.+.+ +..+.++|+|
T Consensus 524 l~~h~~~~~~~~~~d~l 540 (547)
T TIGR03103 524 LANHEPQPTAERFIDLL 540 (547)
T ss_pred ccccCCCchHHHHHHHh
Confidence 99664 3344555544
|
Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein. |
| >PRK14571 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=171.61 Aligned_cols=227 Identities=17% Similarity=0.229 Sum_probs=155.8
Q ss_pred ccccCCcEEEEecCCCCCC----CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHh
Q 019076 57 THTNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~----~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~ 130 (346)
+.++.|++++.|+.+..+. ....+|++|..+.+... ...++.+.+. -|++++.+ +.++..|+||..+.+.|+
T Consensus 27 al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~~l~- 104 (299)
T PRK14571 27 ALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYRFLK- 104 (299)
T ss_pred HHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHh-
Confidence 3458899999998875432 23579999999866321 1456777765 57999865 899999999998888876
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQ 203 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~Q 203 (346)
++|++|++..+.. .. ....++||+|+||..++ +|.+|.++.|.++|... ..++++|
T Consensus 105 -------~~ip~p~~~~~~~-~~------~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVE 167 (299)
T PRK14571 105 -------GTVEIPDFVEIKE-FM------KTSPLGYPCVVKPRREG---SSIGVFICESDEEFQHALKEDLPRYGSVIVQ 167 (299)
T ss_pred -------cCCCCCCEEEEec-hh------hhhhcCCCEEEecCCCC---CcCCEEEECCHHHHHHHHHHHHhhCCcEEEE
Confidence 2699999988742 11 23458999999998743 46889999999887542 3579999
Q ss_pred ecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHH
Q 019076 204 EFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~ 277 (346)
|||+ |+++.|.|+|+. +....... + ...+++|......+.. ..+..+++. ..+.+++
T Consensus 168 eyI~--G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~k~~~g~~~~~~p~~l~~~-----~~~~i~~ 230 (299)
T PRK14571 168 EYIP--GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVAKYTKGETEFILPAPLNPE-----EERLVKE 230 (299)
T ss_pred cccc--ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCccccccccCCCCeeEEeCCCCCHH-----HHHHHHH
Confidence 9995 999999999763 22221111 1 0112222221111100 011122111 1345889
Q ss_pred HHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 278 LARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 278 lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+|.++.++||+ ++++||++.+. | ++||+|||..||+.....+
T Consensus 231 ~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 231 TALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDL 273 (299)
T ss_pred HHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHH
Confidence 99999999997 68889999863 3 6999999999999876544
|
|
| >PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=167.06 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=145.6
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 154 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-- 154 (346)
.+|+++.=+.+... ...++.+.+. .|++.+-+ +.+...++||..+-+.|++ .+||+|+++.+......
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAA-------AGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEeccccchh
Confidence 58999876644211 1346777755 57888754 7899999999999999996 59999999988543221
Q ss_pred hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEe
Q 019076 155 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRR 227 (346)
Q Consensus 155 ~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R 227 (346)
.... ....++||+|+||..++| |.++.++.+.++|.. ...++++|+||+ |+.+.|.|+|+...
T Consensus 153 ~~~~-~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~---- 222 (333)
T PRK01966 153 SLAE-IEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK---- 222 (333)
T ss_pred hHHH-HHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe----
Confidence 1111 234689999999986433 678999999998864 357899999996 89999999996311
Q ss_pred ecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCe
Q 019076 228 FSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDV 304 (346)
Q Consensus 228 ~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~ 304 (346)
.++. +++....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+ .++.+|++.+. +| +
T Consensus 223 -~~~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~ 291 (333)
T PRK01966 223 -ASVP---GEIVKPDDFYDYEAKYLDGSAELIIPADLSEE-----LTEKIRELAIKAFKALGCSGLARVDFFLTE-DG-E 291 (333)
T ss_pred -Eccc---EEEecCCceEcHHHccCCCCceEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-C
Confidence 0111 111111235555444322110 112222211 245689999999999998 56679999974 34 6
Q ss_pred EEEEeccCCCCCCCCcc
Q 019076 305 FYVIDINYFPGYGKMPD 321 (346)
Q Consensus 305 ~~ViDVN~fPg~~gv~~ 321 (346)
+||+|||..||++...-
T Consensus 292 ~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 292 IYLNEINTMPGFTPISM 308 (333)
T ss_pred EEEEEeeCCCCCCcccH
Confidence 99999999999986543
|
|
| >PRK14570 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-19 Score=172.41 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=148.3
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC----
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---- 152 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---- 152 (346)
.+|+++.-+.+... -..+|.+.+. -|++.+.+. .+...|+||..+-+.|++ ++||||++..+....
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~-------~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKS-------FNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------cCCCCCCEEEEeccccccc
Confidence 58999988865321 1357777765 689999988 599999999999999996 689999988774321
Q ss_pred -CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEE
Q 019076 153 -LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKV 224 (346)
Q Consensus 153 -~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~ 224 (346)
+...+. ....++||+|+||.. .|| |.||.++.+.++|.. .+..+++||||. |+++.|.|+|+....
T Consensus 159 ~~~~~~~-~~~~lg~PviVKP~~-~Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~ 232 (364)
T PRK14570 159 KEGIKKD-IKEVLGYPVIVKPAV-LGS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIK 232 (364)
T ss_pred hHHHHHH-HHHhcCCCEEEEeCC-CCC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCce
Confidence 111111 234689999999985 344 678999999988765 256799999995 999999999985211
Q ss_pred EEeecCCCcccchhhc-ccceeeccccccc--ccc---cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 225 VRRFSLPNVSKRELAK-VVSVFRFPRVSSA--AAS---ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 225 ~~R~Slp~~~~~~~~~-~~g~~~~~~vs~~--~~~---~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
+ +|. .+... ...+|+|...+.. +.+ ..++.++++ ..+.++++|.++.++||+. ++.||+++
T Consensus 233 v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e-----~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 233 I----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTK-----HLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred E----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 0 111 11111 1134555443321 100 112222211 1357899999999999995 55699999
Q ss_pred ecCcCCeEEEEeccCCCCCCCCccc
Q 019076 298 EHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+...| ++||+|||..||+.....+
T Consensus 301 ~~~~g-~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 301 EKDTG-LIYLNEINTIPGFTDISMF 324 (364)
T ss_pred ECCCC-cEEEEEeeCCCCCCcccHH
Confidence 74223 6999999999999876444
|
|
| >PRK14569 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=165.04 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=153.9
Q ss_pred ccCCcEEEEecCCC-CCC---CCCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhcc
Q 019076 59 TNKGISFVAIDQNR-PLS---DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLN 132 (346)
Q Consensus 59 ~~~Gi~~v~id~~~-~l~---~q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~ 132 (346)
++.|++++.+|.+. .+. ...++|+++.=+.+... ...++...+. -|++++. ++.++..|+||..+-+.|++
T Consensus 32 ~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~~l~~-- 108 (296)
T PRK14569 32 ISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKEILMH-- 108 (296)
T ss_pred HHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHHHHHH--
Confidence 47899999999863 211 13468988875544221 2456677665 4677764 56999999999999999986
Q ss_pred ccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc------CCCeEEEecc
Q 019076 133 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------EPPMLLQEFV 206 (346)
Q Consensus 133 ~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l------~~p~v~QEfI 206 (346)
++||||++..+.. .. . ....++||+|+||..+ | .|.++.+|.+.++|... ..++++||||
T Consensus 109 -----~gIptp~~~~~~~-~~---~--~~~~~~~P~vVKP~~g-g--ss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI 174 (296)
T PRK14569 109 -----HRMPTPMAKFLTD-KL---V--AEDEISFPVAVKPSSG-G--SSIATFKVKSIQELKHAYEEASKYGEVMIEQWV 174 (296)
T ss_pred -----CCCCCCCeEEEch-hh---h--hHhhcCCCEEEEeCCC-C--CCcCeEEcCCHHHHHHHHHHHHhcCCEEEEccc
Confidence 6999999987742 11 1 2356899999999863 3 36899999999988642 2479999999
Q ss_pred cCCCeEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccc-cCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 019076 207 NHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS-ADDADLDPGIAELPPRPLLERLARELRH 284 (346)
Q Consensus 207 ~h~G~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~-~~~~~~~~~~~~~p~~~~~~~lA~~l~~ 284 (346)
.|++|.|.|+|+.+. .+...+.. .+++|.......+. ..++.+.+ .....++++|.++.+
T Consensus 175 --~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~k~~~~~~~~~P~~l~~-----~~~~~i~~~a~~~~~ 236 (296)
T PRK14569 175 --TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYESKYSGKSIYHSPSGLCE-----QKELEVRQLAKKAYD 236 (296)
T ss_pred --ccEEEEEEEECCcCcceEEEecCC-----------CcCChhhccCCCcEEEeCCCCCH-----HHHHHHHHHHHHHHH
Confidence 489999999998742 22222211 11222221111100 01112211 124568999999999
Q ss_pred HhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 285 RLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 285 ~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+||+. +++||++.+. +| ++||+|||..||++.-..+
T Consensus 237 ~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 237 LLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred HhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHH
Confidence 99975 6679999874 33 6999999999999865443
|
|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=185.31 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=132.2
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-E
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-A 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v 187 (346)
-++..+++.+.||..+.++|++ .+||+|++..+. +.+++.+ ....++||+|+||.. |+ ++.+|.+ +
T Consensus 203 ~~s~~a~~i~~DK~~tk~lL~~-------~GIPvP~~~~v~-s~~~a~~--~a~~iG~PvVVKP~~--G~-~G~GV~~~v 269 (727)
T PRK14016 203 QTSAIAVDIACDKELTKRLLAA-------AGVPVPEGRVVT-SAEDAWE--AAEEIGYPVVVKPLD--GN-HGRGVTVNI 269 (727)
T ss_pred CCcHHHHHHhCCHHHHHHHHHH-------CCcCCCCeeEeC-CHHHHHH--HHHHcCCCEEEEECC--CC-CCCceEEec
Confidence 6788999999999999999996 589999999774 3333323 234689999999986 54 6789998 8
Q ss_pred eChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh------c--cc----c-----
Q 019076 188 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA------K--VV----S----- 243 (346)
Q Consensus 188 ~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~------~--~~----g----- 243 (346)
.++++|.+. ..++++|+||+ |.+|||+|+|++++++.|+-.+.+..+... . |. |
T Consensus 270 ~~~~el~~a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~ 347 (727)
T PRK14016 270 TTREEIEAAYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEK 347 (727)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccC
Confidence 999887642 46899999995 999999999999998777755544211000 0 00 0
Q ss_pred ------------------eeecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEE
Q 019076 244 ------------------VFRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296 (346)
Q Consensus 244 ------------------~~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi 296 (346)
-++..+|...+ ..+.++.......++ .+...++|.++++++|++++|||++
T Consensus 348 ~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~~~GvDi~ 425 (727)
T PRK14016 348 PLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEV--HPENAAIAERAAKIIGLDIAGVDVV 425 (727)
T ss_pred cccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEeccccc--CHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 01111111111 011111111100112 3558999999999999999999999
Q ss_pred EecC----cCCeEEEEeccCCCCCCC
Q 019076 297 REHG----MRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 297 ~~~~----~g~~~~ViDVN~fPg~~g 318 (346)
.++- ...++.|||||..||+..
T Consensus 426 ~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 426 CEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred ecCcccccccCCcEEEEEcCCcchhh
Confidence 8641 012478999999999985
|
|
| >PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=180.29 Aligned_cols=230 Identities=13% Similarity=0.155 Sum_probs=147.8
Q ss_pred hhcccccCCcEEEEecCCCCCCCCC---CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHh
Q 019076 54 YILTHTNKGISFVAIDQNRPLSDQG---PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 54 ~~~~~~~~Gi~~v~id~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~ 130 (346)
.++++.++||.+..+|.+..+...+ ..+.++. -.....|+..+...+.||..|.++|++
T Consensus 437 li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~tk~lL~~ 498 (752)
T PRK02471 437 LLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVTKKILAE 498 (752)
T ss_pred HHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHHHHHHHH
Confidence 3334449999999999875443211 1222211 124667889999999999999999996
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC---hhhhhc-------cCCCe
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE-------LEPPM 200 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~---~~~L~~-------l~~p~ 200 (346)
+|||+|++.++. +.+.+...+ ..-++||+|+||.. |+ +|.++.++.+ .+++.+ ....+
T Consensus 499 -------~GIpvP~~~~~~-~~e~a~~~~-~~~~g~PvVVKP~~--g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~~v 566 (752)
T PRK02471 499 -------AGFPVPAGDEFT-SLEEALADY-SLFADKAIVVKPKS--TN-FGLGISIFKEPASLEDYEKALEIAFREDSSV 566 (752)
T ss_pred -------CCcCCCCEEEEc-CHHHHHHHH-HHhcCCCEEEEECC--CC-CcCCeEEecCcCCHHHHHHHHHHHHhcCCcE
Confidence 699999999885 332222221 22248999999997 44 6789988754 455433 24679
Q ss_pred EEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhc--------cc----ce-----------------------e
Q 019076 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----SV-----------------------F 245 (346)
Q Consensus 201 v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~--------~~----g~-----------------------~ 245 (346)
++|||| .|++|+|+|||++++++.++..+++..+...+ |. |. +
T Consensus 567 lVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~ 644 (752)
T PRK02471 567 LVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGL 644 (752)
T ss_pred EEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCC
Confidence 999999 49999999999999876555546554322111 11 00 1
Q ss_pred eccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecC------cCCeEEEEec
Q 019076 246 RFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDVFYVIDI 310 (346)
Q Consensus 246 ~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~------~g~~~~ViDV 310 (346)
++.+|...+. .+.++... ..+.. ..+...++|.++++++|+.++||||+.++- .+.++.||||
T Consensus 645 ~l~sVp~~Ge~v~L~~~~NlstGg~~~-dvtd~-ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEv 722 (752)
T PRK02471 645 TPDSIPKKGEIVYLRENSNISTGGDSI-DMTDD-MDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNYGIIEL 722 (752)
T ss_pred CccccCCCCCEEEecCCCccCCCCeeE-ecccc-cCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEe
Confidence 1111111110 00111110 11111 245589999999999999999999998641 1115789999
Q ss_pred cCCCCCC
Q 019076 311 NYFPGYG 317 (346)
Q Consensus 311 N~fPg~~ 317 (346)
|..||+.
T Consensus 723 N~~P~l~ 729 (752)
T PRK02471 723 NFNPAMY 729 (752)
T ss_pred cCCCchh
Confidence 9999975
|
|
| >PRK14572 D-alanyl-alanine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=164.47 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=141.7
Q ss_pred CccEEE---EcccchhhHHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-
Q 019076 79 PFDVVL---HKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 153 (346)
Q Consensus 79 ~fDvil---hK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~- 153 (346)
.+|+++ |.-.++. ..+|.+.+. -|++++ .++.++..|+||..|.+.|++ ++|++|+++.+.+...
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~-------~GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQ-------SGQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEEccccc
Confidence 467754 4433333 247777764 578887 458899999999999999986 6899999998853221
Q ss_pred -ChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC----
Q 019076 154 -SIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---- 220 (346)
Q Consensus 154 -~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~---- 220 (346)
...+.. ....++||+|+||.. .| .|.++.++.+.++|.+. ..++++|||| .|++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~-gg--sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVE-GG--SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCC-CC--CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCC
Confidence 111111 124689999999986 33 36899999999988652 4679999999 489999999973
Q ss_pred EEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 221 TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 221 ~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
++... .+|-. +.....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+. +.++|++.
T Consensus 233 ~~~~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISDQ-----EMKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCHH-----HHHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 01100 11111234454443322111 012222211 2346899999999999987 55799999
Q ss_pred ecCcCCeEEEEeccCCCCCCCCccc
Q 019076 298 EHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
+. | .+||+|||..||+.....+
T Consensus 302 ~~--~-~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 302 VD--G-EPHILETNTLPGMTETSLI 323 (347)
T ss_pred EC--C-cEEEEeeeCCCCCCcccHH
Confidence 63 2 6999999999999876444
|
|
| >PRK14568 vanB D-alanine--D-lactate ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=163.80 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=144.2
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+++.-+.+... ...+|.+.+. .|++.+ .++.+...|+||..+.+.|++ ++|++|+++++.... ..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKN-------AGIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEECCc-hh-
Confidence 47988877765221 2457777764 678877 567899999999999999986 589999999885322 11
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEE--EE--E
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI--KV--V 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v--~~--~ 225 (346)
....++||+|+||..+ || |.++.++.+.++|.. .+..+++||||+ |+.+.|.|+|+.- .+ +
T Consensus 160 ---~~~~l~~P~iVKP~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~~ 231 (343)
T PRK14568 160 ---DAATLTYPVFVKPARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGEV 231 (343)
T ss_pred ---hhhhcCCCEEEEeCCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceecc
Confidence 2346899999999863 33 689999999999864 356899999995 8999999998741 11 1
Q ss_pred EeecCCCcccchhhcccceeeccccccccc-ccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC-cEeEEEEEEecCc
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAA-SADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIREHGM 301 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~-~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~ 301 (346)
.+.. ...++|+|+....... .......-| .+++ ..+.++++|.++.++||+ .++.+|++.+. +
T Consensus 232 ~~i~----------~~~~~~~~~~k~~~~~g~~~~~~~~P--a~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 232 DQIR----------LSHGFFRIHQENEPEKGSENSTIIVP--ADISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred eEEe----------cCCCccchhhhhccccCCCCeeEEeC--CCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 1111 1123444443221100 000000111 1122 235689999999999999 67779999984 3
Q ss_pred CCeEEEEeccCCCCCCCCccc
Q 019076 302 RDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 302 g~~~~ViDVN~fPg~~gv~~~ 322 (346)
| .+||+|||..||+.....+
T Consensus 299 g-~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 299 G-TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred C-CEEEEEeeCCCCCCccCHH
Confidence 4 6899999999999865433
|
|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=185.05 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=130.5
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE-E
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-A 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l-v 187 (346)
.|+..++..+.||..+.++|.+ ++||+|++.++. +.+.+.+ ....++||+|+||.. |+ .+.++.+ +
T Consensus 202 ~~s~ia~~ia~DK~~tk~lL~~-------~GIpvP~~~~~~-s~~ea~~--~~~~ig~PvVVKP~~--g~-~G~GV~l~v 268 (864)
T TIGR02068 202 RTSAIAVEIACDKDLTKEILSD-------AGVPVPEGTVVQ-SAEDAWE--AAQDLGYPVVIKPYD--GN-HGRGVTINI 268 (864)
T ss_pred CCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEC-CHHHHHH--HHHHcCCCEEEEECC--CC-CccCEEEEe
Confidence 4678899999999999999996 699999999885 3322322 234589999999997 44 5788998 8
Q ss_pred eChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh------c--cc----c-----
Q 019076 188 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA------K--VV----S----- 243 (346)
Q Consensus 188 ~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~------~--~~----g----- 243 (346)
.+++++.+. ..++++|+||+ |++|+|+|+|++++++.++-.+++..+... . |. |
T Consensus 269 ~s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~ 346 (864)
T TIGR02068 269 LTRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDK 346 (864)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccC
Confidence 999887642 46899999995 899999999999987766655554321110 0 00 0
Q ss_pred ------------------eeeccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEE
Q 019076 244 ------------------VFRFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMI 296 (346)
Q Consensus 244 ------------------~~~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi 296 (346)
-++.++|...+. .+.++.......++ .+...++|.++++++||+++|||++
T Consensus 347 ~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~i~gvD~i 424 (864)
T TIGR02068 347 PLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEI--HPENAATAVRAAKIIGLDIAGVDIV 424 (864)
T ss_pred CccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEeccccc--CHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 001111111110 00111110000112 3458999999999999999999999
Q ss_pred EecCc----CCeEEEEeccCCCCCCCC
Q 019076 297 REHGM----RDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 297 ~~~~~----g~~~~ViDVN~fPg~~gv 319 (346)
.++-+ +.++.|||||..||+...
T Consensus 425 ~~di~~~~~~~~~~iiEvN~~p~~~~h 451 (864)
T TIGR02068 425 TEDISRPLRDTDGAIVEVNAAPGLRMH 451 (864)
T ss_pred ecCCCCCccccCcEEEEEcCCcchhhc
Confidence 85311 124689999999998743
|
Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. |
| >PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=158.30 Aligned_cols=165 Identities=20% Similarity=0.309 Sum_probs=109.4
Q ss_pred CccccCcEEEEccCCCChhh-HHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCC
Q 019076 138 GKVRVPRQMVITKDSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHG 209 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~-~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~ 209 (346)
.||+||+++++......... .-....++||+|+||. ..|| |.|+.+|++.++|.. ++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~-~~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPA-SEGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEES-STST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEEC-CCCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 59999999999643221100 0124579999999998 5565 788999999998865 35789999999 7
Q ss_pred CeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeeccccccc--c--cccCCCCCCCCCCCCCChHHHHHHHHHH
Q 019076 210 GILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA--A--ASADDADLDPGIAELPPRPLLERLAREL 282 (346)
Q Consensus 210 G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~l 282 (346)
|++|.|.|+|+. +.-... .....++|+|...... . ....++.+++. ..+.++++|.++
T Consensus 80 G~E~tv~vl~~~~~~~~~~~e----------i~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~-----~~~~i~~~a~~a 144 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPPVE----------IVFPSEFYDYEAKYQPADSETEYIIPADLSEE-----LQEKIKEIAKKA 144 (203)
T ss_dssp SEEEEEEEEESSSTEEEEEEE----------EEESSSEEEHHHHHSGCCSCEEEESS-SS-HH-----HHHHHHHHHHHH
T ss_pred ccceEEEEEecCCcccCceEE----------EEcCCCceehhheeccCCCceEEEecCCCCHH-----HHHHHHHHHHHH
Confidence 999999999944 332222 2222356666665432 1 11122233221 246789999999
Q ss_pred HHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCCcccHH
Q 019076 283 RHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDYEH 324 (346)
Q Consensus 283 ~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~ 324 (346)
.++||+.-++ ||+..+. +| ++|++|||..||+.....++.
T Consensus 145 ~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p~ 185 (203)
T PF07478_consen 145 FKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFPR 185 (203)
T ss_dssp HHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHHH
T ss_pred HHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHHH
Confidence 9999998887 9999975 34 799999999999987655543
|
3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A .... |
| >TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=154.41 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcCCCCCCceeeEEE
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLA 187 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS~~sh~m~lv 187 (346)
.|+.+..-.|.||+.+.++|++ ++||+|+|.++.....+. +.+...--++ |+|+||+. || +++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~~-~~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAEV-KTIHNIVKDHPDFVIKPAQ--GS-GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHH-------cCCCCCCEEEecCchhhH-HHHHHHHccCCCEEEEECC--CC-CccCeEEE
Confidence 4777888899999999999986 699999999885433232 2222222256 69999998 77 88999999
Q ss_pred eChhhhh--------------------------ccCCC--eEEEecc--cCC---------CeEEEEEEECCEEEE-EEe
Q 019076 188 YDRFSLS--------------------------ELEPP--MLLQEFV--NHG---------GILFKIYIIGETIKV-VRR 227 (346)
Q Consensus 188 ~~~~~L~--------------------------~l~~p--~v~QEfI--~h~---------G~~~KV~VvG~~v~~-~~R 227 (346)
.+.++.. .+..+ .++|||+ +|+ ..++||+|+|+++.+ +.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 7753311 12222 5667886 332 269999999999875 455
Q ss_pred ecCC--Ccccchhhccccee---eccc--ccccccccCCCCCCCC------CCCCCChHHHHHHHHHHHHHhCCcEeEEE
Q 019076 228 FSLP--NVSKRELAKVVSVF---RFPR--VSSAAASADDADLDPG------IAELPPRPLLERLARELRHRLGLRLFNID 294 (346)
Q Consensus 228 ~Slp--~~~~~~~~~~~g~~---~~~~--vs~~~~~~~~~~~~~~------~~~~p~~~~~~~lA~~l~~~lGl~lfGvD 294 (346)
.+.. +|..|- ..+|.. +-.+ +...+.....-...|. ..+.|..+++.++|.++.+++|+.++|+|
T Consensus 175 ~~~~~~~~~tN~--~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvD 252 (317)
T TIGR02291 175 LPTRASDGKANL--HQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVD 252 (317)
T ss_pred ccCccCCccccc--ccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4432 232211 001111 0000 0000000000001111 12234456789999999999999999999
Q ss_pred EEEecCcCCeEEEEeccCCCCCC
Q 019076 295 MIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 295 vi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
++++.+ ++++|+|||..|||.
T Consensus 253 ii~~~~--~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 253 MVLDKE--EGPLVLELNARPGLA 273 (317)
T ss_pred EEEeCC--CCEEEEEeCCCCCCC
Confidence 999743 269999999999998
|
Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown. |
| >TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=163.43 Aligned_cols=195 Identities=13% Similarity=0.200 Sum_probs=128.4
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC-CCcEEEecCcCCCCCCceee
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~fPvVvKP~~a~GS~~sh~m 184 (346)
+.-.|+..+...|.||..+-++|.+ +|||||++.++.+ .....+. ...+ +||+|+||.. |+ .|.|+
T Consensus 461 ~ts~tS~ia~~i~~DK~~TK~iL~~-------aGIPVP~g~~~~~-~~~a~~~--~~~~~g~PVVVKP~~--g~-~G~GV 527 (737)
T TIGR01435 461 MTSKDNYVSPLIMENKVVTKKVLAE-------AGFRVPFGDEFSS-QALALEA--FSLFENKAIVVKPKS--TN-YGLGI 527 (737)
T ss_pred ecCCccHHHHHHhcCHHHHHHHHHH-------cCcCCCCEEEECC-HHHHHHH--HHHhcCCCEEEeeCC--CC-CcCCe
Confidence 4556888999999999999999996 6999999998853 2222121 2234 7999999986 43 57889
Q ss_pred EEEeC---hhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhc--------cc----
Q 019076 185 FLAYD---RFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV---- 242 (346)
Q Consensus 185 ~lv~~---~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~--------~~---- 242 (346)
.++.+ .+++.+ ....+++||||. |++|+|+|||+++.++.++-.+++..+...+ |.
T Consensus 528 si~~~~~~~eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~R 605 (737)
T TIGR01435 528 TIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLR 605 (737)
T ss_pred EEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCccc
Confidence 99877 455432 245799999994 9999999999999876666556664332111 10
Q ss_pred ce----------------------eeccccccccc---------ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe
Q 019076 243 SV----------------------FRFPRVSSAAA---------SADDADLDPGIAELPPRPLLERLARELRHRLGLRLF 291 (346)
Q Consensus 243 g~----------------------~~~~~vs~~~~---------~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf 291 (346)
|. +++.+|...+. .+.+++.. +++. ...+..+++|.++++++|+.++
T Consensus 606 g~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~i-DvTd-~ihp~~~~lA~~aa~algl~i~ 683 (737)
T TIGR01435 606 GTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSI-DMTD-EMDDSYKQIAIRIATAVGAAIC 683 (737)
T ss_pred CCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceE-eccc-ccCHHHHHHHHHHHHhcCCCEE
Confidence 00 01111111100 00111110 1111 1235579999999999999999
Q ss_pred EEEEEEecCcC------CeEEEEeccCCCCCC
Q 019076 292 NIDMIREHGMR------DVFYVIDINYFPGYG 317 (346)
Q Consensus 292 GvDvi~~~~~g------~~~~ViDVN~fPg~~ 317 (346)
|||+|.++-+. ..+.|||||..||+.
T Consensus 684 GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 684 GVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred EEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 99999864211 237899999999965
|
gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=161.21 Aligned_cols=240 Identities=15% Similarity=0.088 Sum_probs=159.4
Q ss_pred ccCCcEEEEecCCCC--C--C---------------------C-CCCccEEEEcccchhh-HHHHHHHHHhCCCeeeeC-
Q 019076 59 TNKGISFVAIDQNRP--L--S---------------------D-QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD- 110 (346)
Q Consensus 59 ~~~Gi~~v~id~~~~--l--~---------------------~-q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VID- 110 (346)
.+.|+++++||.++. . . . ...+|+++.=+.+... -..+|.+.+. -|++.+-
T Consensus 480 ~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~~le~-~gipy~Gs 558 (809)
T PRK14573 480 SPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLEI-IGKPYTGP 558 (809)
T ss_pred cccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCChHHHHHHHH-cCCCeeCC
Confidence 567999998887652 0 0 0 0247888877655311 1457888765 5677654
Q ss_pred hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC--CChhhH--HHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS--LSIPDQ--VFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 111 p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~--~~~~~~--l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++.+...++||..+-+.|++ .||+||++..+.... ...... -....++||+|+||.. .|| |.|+.+
T Consensus 559 ~~~asal~~DK~~~K~~l~~-------~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~-~Gs--S~Gv~~ 628 (809)
T PRK14573 559 SLAFSAIAMDKVLTKRFASD-------VGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAH-LGS--SIGVFE 628 (809)
T ss_pred CHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCC-CCC--CCCEEE
Confidence 77889999999999999986 589999998885311 111110 1235699999999985 444 679999
Q ss_pred EeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccccccc-cc---
Q 019076 187 AYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA-AA--- 255 (346)
Q Consensus 187 v~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~-~~--- 255 (346)
|.++++|.+ .+.++++||||. +|+.+-|.|+|+.-.... .+ +. .+.....++|+|...+.. +.
T Consensus 629 v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~-~~---~e~~~~~~f~dy~~Ky~~~g~~~~ 702 (809)
T PRK14573 629 VHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA-GP---HERRGSGGFIDYQEKYGLSGKSSA 702 (809)
T ss_pred ECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec-cc---eEEccCCCeeCchhcccCCCCCce
Confidence 999998764 256899999986 589999999998621100 01 11 011112246666554421 10
Q ss_pred -ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 256 -SADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 256 -~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
...++.+++. ..+.++++|.++.++||+.-++ ||++.+.+ | .+||+|||..||+.....+
T Consensus 703 ~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g-~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 703 QIVFDLDLSKE-----SQEQVLELAERIYRLLQGKGSCRIDFFLDEE-G-NFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred EEecCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-CEEEEEeeCCCCCCcccHH
Confidence 0012222211 2457899999999999998776 99999753 3 6999999999999875333
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=142.70 Aligned_cols=221 Identities=12% Similarity=0.169 Sum_probs=140.9
Q ss_pred cCCcEEEEecCCCCCCC-----------------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 60 NKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~~-----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++|+.++.+|.+..-.. ...+|+|+.=... .....+..+ ++ .|+++..++++++
T Consensus 20 ~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l-~~-~g~~~~~~~~~~~ 96 (380)
T TIGR01142 20 RLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFEL-EK-EGYFVVPNARATK 96 (380)
T ss_pred HcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHH-Hh-cCCeeCCCHHHHH
Confidence 88999998888642110 1135555542211 112223333 33 3577788999999
Q ss_pred HhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc
Q 019076 117 HLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 195 (346)
Q Consensus 117 ~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~ 195 (346)
.+.||..+.+.+ .+ ++|++|++..+.+ .+++.+ ....++||+|+||.. |+ +|.++.++.++++|..
T Consensus 97 ~~~dK~~~~~~~~~~-------~gip~p~~~~~~~-~~~~~~--~~~~~g~P~VvKP~~--g~-~s~gv~~v~~~~el~~ 163 (380)
T TIGR01142 97 LTMNREGIRRLAAEE-------LGLPTSRYMFADS-LDELRE--AVEKIGYPCVVKPVM--SS-SGKGQSVVRGPEDIEK 163 (380)
T ss_pred HhhCHHHHHHHHHHH-------CCCCCCCceEeCC-HHHHHH--HHHHcCCCEEEEECC--Cc-CCCCeEEECCHHHHHH
Confidence 999999888875 54 5899999998853 222322 234689999999986 44 5789999999998754
Q ss_pred c-----------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 196 L-----------EPPMLLQEFVNHGGILFKIYII---GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 196 l-----------~~p~v~QEfI~h~G~~~KV~Vv---G~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
. ..++++||||+ ++..+.|.++ ++++... ....+.. ..+.+.. ...+..
T Consensus 164 ~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~--------~~~p~~ 226 (380)
T TIGR01142 164 AWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHE--------SWQPQE 226 (380)
T ss_pred HHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEE--------EECCCC
Confidence 2 35799999996 3678888777 3332221 1111110 0111100 000112
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCcc
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 321 (346)
+++ ...+.++++|.++.++||. .++++|++.+.+ ++||+|||.-||-.+...
T Consensus 227 l~~-----~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 227 MSE-----KALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred CCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEE
Confidence 211 1135678999999999998 677899998742 599999999999776554
|
This enzyme is an alternative to PurN (TIGR00639) |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-14 Score=137.89 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=122.1
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m 184 (346)
|+++..++++++.++||..+-+.|.+ ++|++|++..+.+ .+++.+ ....++||+|+||.. |+.+|.++
T Consensus 83 g~~~~p~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~-~~~~~~--~~~~~g~P~vvKp~~--~g~~g~Gv 150 (352)
T TIGR01161 83 GVKLFPSPDALAIIQDRLTQKQFLQK-------LGLPVPPFLVIKD-EEELDA--ALQELGFPVVLKART--GGYDGRGQ 150 (352)
T ss_pred CCeECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCccEeCC-HHHHHH--HHHHcCCCEEEEeCC--CCCCCCCE
Confidence 56788999999999999999999986 5899999998853 222322 224689999999986 32257899
Q ss_pred EEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEEC---CEEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 185 FLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIG---ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 185 ~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG---~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
.++.+.+++... ..++++||||+ .|..+.|.++. +++.++.. ..+. ...+...++.
T Consensus 151 ~~v~~~~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~~~--~~~~------~~~g~~~~~~------- 214 (352)
T TIGR01161 151 YRIRNEADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFYPV--VENI------HQDGILRYVV------- 214 (352)
T ss_pred EEECCHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEECC--cccE------EeCCEEEEEE-------
Confidence 999999988653 34899999996 46888887763 23332110 0010 0112111100
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 257 ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 257 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.+..+++. ..+.++++|.++.++||+ .++++|++++. +| .+||+|||.-||=.|
T Consensus 215 -~p~~~~~~-----~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 215 -APAAVPDA-----IQARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNSG 269 (352)
T ss_pred -CCCCCCHH-----HHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCcC
Confidence 01122111 145689999999999998 47789999874 34 599999999998544
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-14 Score=136.24 Aligned_cols=240 Identities=19% Similarity=0.184 Sum_probs=166.3
Q ss_pred cCCcEEEEecCCCCCC---CC-------CCccEEEEcccchhh-HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHH
Q 019076 60 NKGISFVAIDQNRPLS---DQ-------GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDV 128 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~---~q-------~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L 128 (346)
..|.+...+|...... .. ..+|+++..+.+... -..+|.|++..-==.|.-|..+-..++||..+-.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~ 111 (317)
T COG1181 32 GFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLF 111 (317)
T ss_pred hcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHH
Confidence 5788888888866333 12 578898887766321 134666665421126788999999999998877666
Q ss_pred HhccccCCCCccccCcEEEEccCC-CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCe
Q 019076 129 ADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPM 200 (346)
Q Consensus 129 ~~l~~~~~~~~I~~P~~~~i~~~~-~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~ 200 (346)
.. .+++++..+.+..+. .+..-.-...+++||++|||. --|| |-++..+.+.+++.. .+..+
T Consensus 112 ~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~-~~gS--Svg~~~v~~~~d~~~~~e~a~~~d~~v 181 (317)
T COG1181 112 KA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPA-REGS--SVGRSPVNVEGDLQSALELAFKYDRDV 181 (317)
T ss_pred HH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcC-Cccc--eeeEEEeeeccchHHHHHHHHHhCCce
Confidence 64 589999999886542 222111135689999999997 4566 778999999888764 36789
Q ss_pred EEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcc-cceeecccccccccc---cCCCCCCCCCCCCCChHHHH
Q 019076 201 LLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV-VSVFRFPRVSSAAAS---ADDADLDPGIAELPPRPLLE 276 (346)
Q Consensus 201 v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~-~g~~~~~~vs~~~~~---~~~~~~~~~~~~~p~~~~~~ 276 (346)
++|+|++ |+.+.|-++|+.. ... .++ .++.... ..+|+|...+..+.. ...+.+++. ..+.++
T Consensus 182 l~e~~~~--~rei~v~vl~~~~-~~~--~l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~-----~~~~i~ 248 (317)
T COG1181 182 LREQGIT--GREIEVGVLGNDY-EEQ--ALP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDE-----IHEEIK 248 (317)
T ss_pred eeccCCC--cceEEEEecCCcc-cce--ecC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCHH-----HHHHHH
Confidence 9999997 9999999999975 111 111 1122222 467788776543211 112222211 246789
Q ss_pred HHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccH
Q 019076 277 RLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYE 323 (346)
Q Consensus 277 ~lA~~l~~~lG-l~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~ 323 (346)
++|.++.++|| ..+.++|++.+..+| ++|++|||..|||..+--|+
T Consensus 249 ~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 249 ELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred HHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccch
Confidence 99999999999 999999999987344 79999999999988776663
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=140.04 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=126.7
Q ss_pred HHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCC
Q 019076 98 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 177 (346)
Q Consensus 98 ~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~G 177 (346)
++++++ ..+..+++++..+.||..+-+.|.+ .+||+|++..+.+ .+++.+ ....++||+|+||.. |
T Consensus 80 ~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~s-~~~l~~--~~~~~g~P~vlKp~~--~ 145 (372)
T PRK06019 80 DALAAR--VPVPPGPDALAIAQDRLTEKQFLDK-------LGIPVAPFAVVDS-AEDLEA--ALADLGLPAVLKTRR--G 145 (372)
T ss_pred HHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceEeCC-HHHHHH--HHHHcCCcEEEEeCC--C
Confidence 344444 4677999999999999999999986 5899999998853 333322 224689999999985 3
Q ss_pred CCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeeccc
Q 019076 178 SAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 178 S~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
...|+++.++.+.++|... ..++++||||+ .++.+-|.++++ ++.++. ...++. ..|.+.++.
T Consensus 146 g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~p--~~e~~~------~~gi~~~~~ 216 (372)
T PRK06019 146 GYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFYP--LVENVH------RNGILRTSI 216 (372)
T ss_pred CcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEeC--CcccEE------eCCEEEEEE
Confidence 2368999999999988653 35899999997 478888877754 233211 111111 112222211
Q ss_pred ccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 250 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++.+++ ...++++++|.++.++||+. ++++|++++. +| ++||+|||.-|+-.|.
T Consensus 217 --------~pa~~~~-----~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 217 --------APARISA-----ELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred --------CCCCCCH-----HHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 0112221 12456899999999999975 7789999864 33 6999999999986554
|
|
| >PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=129.64 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=99.4
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l 196 (346)
+|.||..|.+++.+ .+|++|+++.+.. .+++.+. ...++||+|+||..+. +|.+|.++.+.++|.+.
T Consensus 1 ~~~dK~~~~~~~~~-------~gv~~P~~~~~~~-~~~~~~~--~~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKK-------AGVPVPKTRIVDS-EEELRAF--AEDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHH-------HTS----EEEECS-HHHHHHH--HHHSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHH-------cCcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 57899999999997 4899999998853 3333332 3456799999999844 46899999999998764
Q ss_pred -----------CCCeEEEecccCCCeEE--EEEEECCEEEE--EEeecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILF--KIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~--KV~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
..++++||||+ |..+ .+++.++++++ +.+... ... .... ......... .
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~-----------~ 131 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVR-QSP-GHFS-GGVPTGYSV-----------P 131 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEE-EET-CCCS-SSEEEEEEE-----------S
T ss_pred HHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEec-ccc-cccc-cceeeeeec-----------c
Confidence 25799999997 5555 66677777643 222211 100 0000 000000000 0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. +.+..+.+++++.++.+++|. ..+++|++.+.+ | ++++||||.-+|
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 132 S-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp -------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred c-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 0 011136689999999999998 888999999974 5 799999998765
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=134.67 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=115.9
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++.++++++..+.||..|.+.|.+ .+|++|+++.+.+ .+++.+.+....++||+|+||.. |+ .|.++.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~--g~-~s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKE-------NGIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRD--GS-ASIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHH-------cCCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCC--CC-CccCeEE
Confidence 567999999999999999999997 5899999987742 22222211235689999999976 43 5789999
Q ss_pred EeChhhhhcc---CCCeEEEecccCCCeEEEEEEE---CCEEE-EEEeecCCCcccchhhcccceeecccccccccccCC
Q 019076 187 AYDRFSLSEL---EPPMLLQEFVNHGGILFKIYII---GETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 187 v~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~Vv---G~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
+.+.+++.+. ..++++|||| .|..+.+-++ ++++. +..+..+.. ..|. .. .
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~--------~~g~-----------~~-~ 224 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV--------RAGE-----------TS-K 224 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee--------cCCc-----------ee-E
Confidence 9999998653 3589999999 5777765444 44443 333332210 0000 00 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+. ..+.+.+.+++.++.++||+ .+++||++++. | ++++||||.-++
T Consensus 225 ~~-------~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 225 GV-------TVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred EE-------EcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 01235689999999999999 58889999985 3 699999997444
|
|
| >PRK07206 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=134.98 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=123.5
Q ss_pred HHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC---cEEEecCc
Q 019076 98 DYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL---PLVAKPLV 174 (346)
Q Consensus 98 ~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f---PvVvKP~~ 174 (346)
+.+.++-+.+.-++++++..++||..|.+.|.+ ++|++|++..+. +.+++.+.+ ..++| |+|+||..
T Consensus 86 a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~-------~gi~~p~~~~~~-~~~e~~~~~--~~~g~~~~P~VvKP~~ 155 (416)
T PRK07206 86 DRLAEILTPQYSNDPALSSARRNKAEMINALAE-------AGLPAARQINTA-DWEEAEAWL--RENGLIDRPVVIKPLE 155 (416)
T ss_pred HHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHH-------cCCCcccEEecC-CHHHHHHHH--HhcCCCCCCEEEeCCC
Confidence 334455666667899999999999999999996 589999999874 223333322 34566 99999987
Q ss_pred CCCCCCceeeEEEeChhhhhcc--------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCcccc
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL--------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKR 236 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l--------------~~p~v~QEfI~h~G~~~KV--~VvG~~v~~--~~R~Slp~~~~~ 236 (346)
|+ +|.++.++.+.++|.+. ..++++||||. |..|-| ++.++++.+ +.+..-....
T Consensus 156 --g~-gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-- 228 (416)
T PRK07206 156 --SA-GSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-- 228 (416)
T ss_pred --CC-CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC--
Confidence 43 57899999999987542 24799999995 777765 444666543 2322111110
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCC
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
.+.+.+.. ..+.|. ..+..+.+.+++.++.++||+ ..+.+|++.+.+ ++++||||.-|
T Consensus 229 -----~~~~~~~~----------~~~~p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~---g~~liEin~R~ 288 (416)
T PRK07206 229 -----SGSTVYDY----------DEFLDY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTAD---GPRLIEIGARL 288 (416)
T ss_pred -----CCCceecc----------cccCCc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCC---CCEEEEECCcc
Confidence 01000000 011110 012245688999999999998 578899998742 47899999999
Q ss_pred CCCCCcc
Q 019076 315 GYGKMPD 321 (346)
Q Consensus 315 g~~gv~~ 321 (346)
|=...+.
T Consensus 289 ~G~~~~~ 295 (416)
T PRK07206 289 DGGLHPD 295 (416)
T ss_pred CCCCccc
Confidence 8554443
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=130.04 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
+...++++++.|+||..+.+.+.+ .||++|++..+.+ .+++.+ +.....+||+|+||..++ +++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~-------~GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~---~~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARS-------LGLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSR---FVRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCccc---CCCeEEE
Confidence 456889999999999999999997 4899999999853 333322 222224899999999744 4578888
Q ss_pred EeChhhhhcc----CCCeEEEecccCCCeEE--EEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCC
Q 019076 187 AYDRFSLSEL----EPPMLLQEFVNHGGILF--KIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 187 v~~~~~L~~l----~~p~v~QEfI~h~G~~~--KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
+.+.+.+..+ ..|+++||||+ |..+ -.++.++++.+. .+. +.. ....+. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~-----~~~~~~-----------~--- 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEY-----CAGSGA-----------Q--- 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccc-----cCCCCc-----------e---
Confidence 8888777765 35799999996 5554 455567776542 211 110 000000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....+ . ..+.+.+++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 00011 0 1356899999999999988 7789999873 45 799999997666
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=131.74 Aligned_cols=231 Identities=13% Similarity=0.192 Sum_probs=144.7
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC--------------C---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~--------------~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ +.|+.++.+|.+..-. + ...+|+|+.-..+ .....+... ++
T Consensus 25 ~~~~~a~~------~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~-~~~~~~~~l-~~ 96 (395)
T PRK09288 25 KEVAIEAQ------RLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA-IATDALVEL-EK 96 (395)
T ss_pred HHHHHHHH------HCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc-CCHHHHHHH-Hh
Confidence 34555566 8899999888753111 0 1246666653322 112223333 34
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
. ++.+..++++++.++||..+-+.+.+ ..+||+|++..+.+ .+++.+. ...++||+|+||.. |+ .|.
T Consensus 97 ~-g~~~~~~~~a~~~~~dK~~~k~~l~~------~~gip~p~~~~~~s-~~~l~~~--~~~~g~P~VvKP~~--g~-~s~ 163 (395)
T PRK09288 97 E-GFNVVPTARATRLTMNREGIRRLAAE------ELGLPTSPYRFADS-LEELRAA--VEEIGYPCVVKPVM--SS-SGK 163 (395)
T ss_pred c-CCeeCCCHHHHHHHhCHHHHHHHHHH------hCCCCCCCceEECC-HHHHHHH--HHhcCCCEEEEeCC--Cc-CCC
Confidence 3 67777889999999999998888742 25899999998853 3333222 24689999999985 43 578
Q ss_pred eeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecc
Q 019076 183 ELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFP 248 (346)
Q Consensus 183 ~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~ 248 (346)
++.++.+.++|.+. ..++++||||+ .|..+.|.++.+. .... ....+. . ..+.+..
T Consensus 164 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~-----~-~~~~~~~- 233 (395)
T PRK09288 164 GQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHR-----Q-EDGDYRE- 233 (395)
T ss_pred CeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccE-----E-ECCEEEE-
Confidence 99999999887542 25899999996 4778888776432 2221 011111 0 0011100
Q ss_pred cccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 249 RVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 249 ~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
...+..+++ ...+.++++|.++.++||. ..+.+|++++.+ ++||||||.-||-.+....
T Consensus 234 -------~~~p~~l~~-----~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~~ 293 (395)
T PRK09288 234 -------SWQPQPMSP-----AALEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVTL 293 (395)
T ss_pred -------EECCCCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCcceee
Confidence 000112211 1134578899999999985 445699998642 6999999999986655443
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=135.68 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=154.5
Q ss_pred CCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCC-C--------------------CCccEEE
Q 019076 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSD-Q--------------------GPFDVVL 84 (346)
Q Consensus 26 ~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-q--------------------~~fDvil 84 (346)
....+||....- .+...+...|+ +.|++++.+|.+..-.. + ...|+|.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~------~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAAS------QMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHH------HCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEE
Confidence 345678887766 22344555666 89999999998652110 0 0123331
Q ss_pred EcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC
Q 019076 85 HKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL 164 (346)
Q Consensus 85 hK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l 164 (346)
.-... .....+ +.+++ -++++..+++++..|+||..+-+.|.+ ++|++|++..+.+ .+++.+ ....+
T Consensus 89 ~e~e~-v~~~~l-~~le~-~gi~v~ps~~al~i~~DK~~~K~~l~~-------~GIptp~~~~v~~-~~el~~--~~~~i 155 (577)
T PLN02948 89 VEIEH-VDVDTL-EALEK-QGVDVQPKSSTIRIIQDKYAQKVHFSK-------HGIPLPEFMEIDD-LESAEK--AGDLF 155 (577)
T ss_pred EecCC-CCHHHH-HHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeEEeCC-HHHHHH--HHHhc
Confidence 11000 012233 33333 356677899999999999999999986 5899999998852 222322 23468
Q ss_pred CCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcc
Q 019076 165 KLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVS 234 (346)
Q Consensus 165 ~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~ 234 (346)
+||+|+||.. |+.+|.++.++.++++|... ..++++|+||+ ..+.+-|.|+++ .+.++ |-.
T Consensus 156 g~P~VvKP~~--ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~~-----p~~- 226 (577)
T PLN02948 156 GYPLMLKSRR--LAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRCY-----PVV- 226 (577)
T ss_pred CCcEEEEeCC--CCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEEe-----cCc-
Confidence 9999999985 33367899999999887542 35899999995 348888888843 23321 211
Q ss_pred cchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 235 KRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 235 ~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
+.....+.+.+. ..++.+++. ..+.++++|.++.++||.. ++.+|++++. .| .+||+|||.-
T Consensus 227 --E~~~~~~~~~~~--------~~Pa~l~~~-----~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpR 289 (577)
T PLN02948 227 --ETIHKDNICHVV--------EAPANVPWK-----VAKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPR 289 (577)
T ss_pred --ccEEECCeeEEE--------EECCCCCHH-----HHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCC
Confidence 100111111110 012223221 2456899999999999865 4569999975 34 6899999999
Q ss_pred CCCCCC
Q 019076 314 PGYGKM 319 (346)
Q Consensus 314 Pg~~gv 319 (346)
||..|.
T Consensus 290 pg~sGh 295 (577)
T PLN02948 290 PHNSGH 295 (577)
T ss_pred CCCCCc
Confidence 996653
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-13 Score=148.04 Aligned_cols=218 Identities=17% Similarity=0.256 Sum_probs=138.5
Q ss_pred cCCcEEEEecCCCCC-C------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+-.. + + ....|.|+.-..++... .+...+++ -|+.++ .++++
T Consensus 586 ~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~-~Gi~ilg~s~~a 663 (1066)
T PRK05294 586 EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEA-AGVPILGTSPDA 663 (1066)
T ss_pred HCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHH-CCCceeCCCHHH
Confidence 899999999876421 1 0 12346666555543322 33333444 477765 67899
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .++..+. ...++||+|+||.. |+ +|.+|.++.|+++|.
T Consensus 664 i~~~~DK~~~~~~L~~-------~GIp~P~~~~~~s-~ee~~~~--~~~igyPvvVKP~~--~~-Gg~Gv~iv~~~eeL~ 730 (1066)
T PRK05294 664 IDLAEDRERFSKLLEK-------LGIPQPPNGTATS-VEEALEV--AEEIGYPVLVRPSY--VL-GGRAMEIVYDEEELE 730 (1066)
T ss_pred HHHhCCHHHHHHHHHH-------cCcCCCCeEEECC-HHHHHHH--HHhcCCCeEEEeCC--CC-CCCcEEEECCHHHHH
Confidence 9999999999999986 5899999998853 2222222 34689999999976 43 678999999999886
Q ss_pred cc---------CCCeEEEecccCC-CeEEEEEEECCEEEE--EEe-ecCCCcccchhhcccceeecccccccccccCCCC
Q 019076 195 EL---------EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~-G~~~KV~VvG~~v~~--~~R-~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
.+ ..|+++||||... ...+-+++-|+.+.+ ..+ .....+..++ ....+ ....
T Consensus 731 ~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~----------p~~~ 795 (1066)
T PRK05294 731 RYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL----------PPQT 795 (1066)
T ss_pred HHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe----------cCCC
Confidence 52 4689999999633 223344443544433 111 1101110000 00000 0011
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 262 LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 262 ~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+++ ...+.++++|.++.++||+ .++++|++.++ +++||||||.-|+
T Consensus 796 l~~-----~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~---~~~yViEiNpR~s 842 (1066)
T PRK05294 796 LSE-----EIIEEIREYTKKLALELNVVGLMNVQFAVKD---DEVYVIEVNPRAS 842 (1066)
T ss_pred CCH-----HHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC---CeEEEEEEecCCC
Confidence 111 0135689999999999999 56679999874 3699999998876
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=142.74 Aligned_cols=217 Identities=18% Similarity=0.280 Sum_probs=138.2
Q ss_pred cCCcEEEEecCCCCC-C------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+-.- + + ....|.|+.-..+... ..+...+++ .|++++ .++++
T Consensus 586 ~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~-~Gi~i~G~s~~~ 663 (1050)
T TIGR01369 586 ELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEE-AGVPILGTSPES 663 (1050)
T ss_pred hCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHH-CCCcEECCCHHH
Confidence 899999999885311 1 0 1124555544433221 123333333 467665 78999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+. +.+++.+. ...++||+|+||.... +|.+|.+++|+++|.
T Consensus 664 i~~~~DK~~f~~lL~~-------~GIp~P~~~~v~-s~ee~~~~--~~~igyPvIVKP~~~~---Gg~gv~iv~~~eeL~ 730 (1050)
T TIGR01369 664 IDRAEDREKFSELLDE-------LGIPQPKWKTAT-SVEEAVEF--ASEIGYPVLVRPSYVL---GGRAMEIVYNEEELR 730 (1050)
T ss_pred HHHHCCHHHHHHHHHH-------CCcCCCCeEEEC-CHHHHHHH--HHhcCCCEEEEECCCC---CCCCeEEECCHHHHH
Confidence 9999999999999997 589999999885 33333221 3468999999998743 568999999999986
Q ss_pred cc---------CCCeEEEecccCCCeEEE--EEEECCEEEEE--Eee-cCCCcccchhhcccceeecccccccccccCCC
Q 019076 195 EL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVV--RRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~G~~~K--V~VvG~~v~~~--~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~ 260 (346)
.. +.|+++||||+ +|..+- +++.|+++.+. ... ...++..++ ....++ ..
T Consensus 731 ~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sGd-----s~~~~P----------~~ 794 (1050)
T TIGR01369 731 RYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGD-----STCVLP----------PQ 794 (1050)
T ss_pred HHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeecccCCcCCC-----ceEEec----------CC
Confidence 52 46899999996 366554 45556666542 221 101110000 000000 00
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 261 DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 261 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
.+++ ...+.++++|.+++++||+. ++++|++++. +++||||||.-++
T Consensus 795 ~l~~-----~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~---~~~yvIEvNpR~s 842 (1050)
T TIGR01369 795 TLSA-----EIVDRIKDIVRKIAKELNVKGLMNIQFAVKD---GEVYVIEVNPRAS 842 (1050)
T ss_pred CCCH-----HHHHHHHHHHHHHHHHCCCcceEEEEEEEEC---CeEEEEEEeCCCC
Confidence 1111 01356899999999999974 4459999974 3799999999886
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=129.39 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=117.1
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.+.||..|.+.|.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 100 ~Gi~~~g~~~~~~~~~~dK~~~r~~l~~-------~gIp~pp~~~~~~~-~~~~~~~--~~~~~g~PvvvKP~~--g~-g 166 (445)
T PRK08462 100 HNIKFIGPSVEVMALMSDKSKAKEVMKR-------AGVPVIPGSDGALK-SYEEAKK--IAKEIGYPVILKAAA--GG-G 166 (445)
T ss_pred CCCeEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEeCC--CC-C
Confidence 46654 5888999999999999999986 589998864 232 2222222 234689999999987 44 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Ee-ecCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RR-FSLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R-~Slp~~~~~~~~~~~ 242 (346)
|++|.++.++++|... +.++++||||+ +++.+.|.++|+. ++.. .| .+.... ..
T Consensus 167 s~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~-------~~ 238 (445)
T PRK08462 167 GRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQRR-------HQ 238 (445)
T ss_pred CCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEeccccceec-------cc
Confidence 7899999999988642 24699999996 4677888888653 2221 11 111000 00
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+ . . .+. .+++. ..+.+.++|.++.++||+.-++ ||++++.+ | ++||+|||.-+|-.
T Consensus 239 ~~~-----~----~-~p~~~l~~~-----~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~~~~ 298 (445)
T PRK08462 239 KLI-----E----E-SPAVVLDEK-----TRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRLQVE 298 (445)
T ss_pred ceE-----E----E-cCCCCCCHH-----HHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCcCcC
Confidence 000 0 0 000 11110 1356899999999999997555 99999753 3 69999999988754
|
|
| >PRK02186 argininosuccinate lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-12 Score=139.18 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=118.8
Q ss_pred HHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 100 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 100 ~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
+.++-+++- ++++++..++||..|-+.|.+ ++|++|++..+.+ ..+..+. ...++||+|+||..+.
T Consensus 88 lae~lglpg-~~~ea~~~~~dK~~~r~~L~~-------~GIp~P~~~~v~~-~~e~~~~--~~~~~~PvVVKP~~g~--- 153 (887)
T PRK02186 88 VARRLGLPA-ANTEAIRTCRDKKRLARTLRD-------HGIDVPRTHALAL-RAVALDA--LDGLTYPVVVKPRMGS--- 153 (887)
T ss_pred HHHHhCcCC-CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEeCC-HHHHHHH--HHhCCCCEEEEeCCCC---
Confidence 334445554 567999999999999999996 5899999998853 2222221 2468999999998743
Q ss_pred CceeeEEEeChhhhhcc--------CCCeEEEecccCCCeEEEE--EEECCEE--EEEEeecCCCcccchhhcccceeec
Q 019076 180 KSHELFLAYDRFSLSEL--------EPPMLLQEFVNHGGILFKI--YIIGETI--KVVRRFSLPNVSKRELAKVVSVFRF 247 (346)
Q Consensus 180 ~sh~m~lv~~~~~L~~l--------~~p~v~QEfI~h~G~~~KV--~VvG~~v--~~~~R~Slp~~~~~~~~~~~g~~~~ 247 (346)
+|.++.++.|.++|... ..++++||||+ |..|-| ++.++.+ ..+.++....-+ .+... |
T Consensus 154 gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~~~--~~ve~-g---- 224 (887)
T PRK02186 154 GSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGPPP--HFVEI-G---- 224 (887)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCCCC--CeEEe-c----
Confidence 57899999999887542 46899999995 666655 4444443 234444321100 00000 0
Q ss_pred ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 248 PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 248 ~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
...+..+++ +..+.+.+++.++.++||+ ..+++|++.+. ++++|||||.-+|=
T Consensus 225 --------~~~P~~l~~-----~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~---~g~~liEIn~R~~G 279 (887)
T PRK02186 225 --------HDFPAPLSA-----PQRERIVRTVLRALDAVGYAFGPAHTELRVRG---DTVVIIEINPRLAG 279 (887)
T ss_pred --------cccCCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC---CCEEEEEECCCCCC
Confidence 000111111 1245688999999999998 56889999874 25899999987763
|
|
| >PRK13790 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=126.81 Aligned_cols=212 Identities=13% Similarity=0.137 Sum_probs=129.4
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~ 124 (346)
..+.++|+ +.+++++.+.++.++ ...+.+..++ -|+.++ .++++++.+.||..+
T Consensus 17 ~~l~~~~~------~~~id~vi~g~E~~l------------------~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~ 71 (379)
T PRK13790 17 QAILDFAK------QQNVDWVVIGPEQPL------------------IDGLADILRA-NGFKVFGPNKQAAQIEGSKLFA 71 (379)
T ss_pred HHHHHHHH------HhCCCEEEECCcHHH------------------HHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHH
Confidence 44566677 777777776665432 1234444444 467766 555999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------- 196 (346)
-+.|++ ++||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.+|.++.|.+++.+.
T Consensus 72 k~~l~~-------~gIptp~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~ 138 (379)
T PRK13790 72 KKIMEK-------YNIPTADYKEVE-RKKDALTY--IENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDE 138 (379)
T ss_pred HHHHHH-------CCCCCCCEEEEC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcC
Confidence 999996 689999998874 22222222 23689999999974 43 67999999999887541
Q ss_pred -CCCeEEEecccCCCeEEEEEEE--CCEEEE---EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC
Q 019076 197 -EPPMLLQEFVNHGGILFKIYII--GETIKV---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 270 (346)
Q Consensus 197 -~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~---~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p 270 (346)
..++++||||. |..+-|.++ |+.+.. ..+.....++ +++..+ +++ .+...|. ..++
T Consensus 139 ~~~~vlvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~kr~~~-~d~g~~----------tgg----~~~~~p~-~~l~ 200 (379)
T PRK13790 139 EEGTVVFETFLE--GEEFSLMTFVNGDLAVPFDCIAQDHKRAFD-HDEGPN----------TGG----MGAYCPV-PHIS 200 (379)
T ss_pred CCCeEEEEEccc--CceEEEEEEeeCCEEEeccccccccccccc-CCCCCc----------CCC----CceEeeC-CCCC
Confidence 34799999995 677766554 554321 1111000000 011100 000 0001110 0011
Q ss_pred ---ChHHHHHHHHHHHHHh---CCcEeE---EEEEEecCcCCeEEEEeccCCCCC
Q 019076 271 ---PRPLLERLARELRHRL---GLRLFN---IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 271 ---~~~~~~~lA~~l~~~l---Gl~lfG---vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.+...++++.++.++| |+.++| +|++... . ++||+|+|.-||-
T Consensus 201 ~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~--g~~viEiN~R~G~ 252 (379)
T PRK13790 201 DDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-D--GPKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CeEEEEEEcccCC
Confidence 0112278888888888 666666 6999864 2 4899999998874
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-12 Score=139.28 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=141.1
Q ss_pred cCCcEEEEecCCCCC------------------------CCCCCccEEEEcccchhh---HHHHH--HHHHhCCCeee-e
Q 019076 60 NKGISFVAIDQNRPL------------------------SDQGPFDVVLHKLSGMEW---CKIIE--DYRQKHPEVTI-L 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l------------------------~~q~~fDvilhK~t~~~~---~~~l~--~y~~~~p~v~V-I 109 (346)
+.|++++.+|.+-.- .....+|+|+.=+.++.. ...+. ..++. -|+++ -
T Consensus 55 e~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~-~GI~~~G 133 (1102)
T PLN02735 55 EEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEK-YGVELIG 133 (1102)
T ss_pred HcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHH-CCCEEEC
Confidence 899999999986421 012457888876544221 11122 12233 45544 4
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCCCCCCceeeEEEe
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAY 188 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~GS~~sh~m~lv~ 188 (346)
.+++++..+.||..+-+.|.+ .|||+|++..+.+ .++..+ ....++ ||+|+||..+. +|.++.+++
T Consensus 134 ~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~eea~~--~~~~iG~yPvVVKP~~~~---GG~Gv~iv~ 200 (1102)
T PLN02735 134 AKLDAIKKAEDRELFKQAMEK-------IGLKTPPSGIATT-LDECFE--IAEDIGEFPLIIRPAFTL---GGTGGGIAY 200 (1102)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeeEeCC-HHHHHH--HHHHhCCCCEEEEeCCCC---CCCceEEEC
Confidence 688999999999999999986 5899999998853 222222 134577 99999998733 456899999
Q ss_pred Chhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 189 DRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 189 ~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
|+++|... ..++++||||. +.+.|-|-|++|. +..+ .+..+++.....+ | +.+. .
T Consensus 201 n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~gvh~--G----~s~~----v 267 (1102)
T PLN02735 201 NKEEFETICKAGLAASITSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENIDPMGVHT--G----DSIT----V 267 (1102)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEEEEEEEcCCCCEEEE--eeEEEEcCCcccc--C----CEEE----E
Confidence 99998653 35799999995 2378999988762 2211 0111110000000 0 0000 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+ ++ .+++. ....++++|.++.++||+ ..+++|++.+..+| ++|||||| |.+.+..
T Consensus 268 a-Pa~tL~~~-----~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVN--PR~s~ss 325 (1102)
T PLN02735 268 A-PAQTLTDK-----EYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMN--PRVSRSS 325 (1102)
T ss_pred E-eCCCCCHH-----HHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEec--CCCCCcc
Confidence 0 11 11110 134689999999999998 58889999974334 79999999 4444443
|
|
| >PRK05586 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=128.10 Aligned_cols=179 Identities=12% Similarity=0.190 Sum_probs=118.3
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++ +--+++++..+.||..+-+.+.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~-------~GIpvp~~~~~~~~-~~~e~~~--~~~~igyPvvvKP~~--gg-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIK-------AGVPVVPGSEGEIE-NEEEALE--IAKEIGYPVMVKASA--GG-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHH-------CCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECC--CC-C
Confidence 4554 56788999999999999999986 589999874 232 2222222 234689999999987 44 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccce
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~ 244 (346)
|++|.++.++++|.+. +.++++||||+ +++.+.|.|+++. +.....+... +. ..+...
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~-~~----~~~~~~ 238 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS-LQ----RRNQKV 238 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc-eE----ecccce
Confidence 7999999999987542 35799999996 3478888888753 3222111000 00 000000
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.. .+....+++ ...+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.-||..
T Consensus 239 ~~---------~~p~~~l~~-----~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 239 LE---------EAPSPVMTE-----ELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred EE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 00 000001111 01346899999999999998776 9999974 34 69999999888754
|
|
| >PRK08654 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=125.64 Aligned_cols=176 Identities=13% Similarity=0.211 Sum_probs=119.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|++++ .++++++.+.||..+.+.+.+ .+||+|++... -.+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~-------~GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~--Gg-GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKK-------AGVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASA--GG-GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCC--CC-CC
Confidence 467665 568999999999999999986 58999877642 122222222 234689999999986 33 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~g 243 (346)
.+|.++.++++|.+. +.++++|+||. +++.+-|-|+||. +....|. |...- ...
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqrr-------~qk 237 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQRR-------HQK 237 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeeccccccC-------ccc
Confidence 899999999988542 35799999997 4677888888764 2233332 21100 000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
... .+ ++ .+++ ...+.+.++|.++.+++|..-.| ||++.++ + ++|++|||.-++..
T Consensus 238 ~ie---------~~-Pa~~l~~-----~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 238 LIE---------EA-PSPIMTP-----ELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred eEE---------EC-CCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 000 00 00 1111 12456899999999999999877 9999863 3 69999999988754
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-12 Score=128.09 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=119.5
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++ +-.++++++.|.||..+.+.+.+ ++||+|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 101 ~gi~~igps~~ai~~~~DK~~~r~~l~~-------~GIp~~p~~~~~v~-~~~e~~~--~~~~igyPvvvKp~~--gg-g 167 (467)
T PRK12833 101 AGLIFVGPDAQTIRTMGDKARARRTARR-------AGVPTVPGSDGVVA-SLDAALE--VAARIGYPLMIKAAA--GG-G 167 (467)
T ss_pred cCCCccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcCcCcC-CHHHHHH--HHHHhCCCEEEEECC--CC-C
Confidence 3554 45678999999999999999986 589998775 442 2222222 234689999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE--E-EEEEee-cCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET--I-KVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~--v-~~~~R~-Slp~~~~~~~~~~~g 243 (346)
|.+|.++.++++|... +..+++|+||+. |+.+-|-|+||. + ....|. +.... ...
T Consensus 168 g~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r~-------~~k 239 (467)
T PRK12833 168 GRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQRR-------RQK 239 (467)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeecccccC-------Ccc
Confidence 7899999999988642 356999999973 789999888774 2 233331 11100 000
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.+.. +....+++ ...+.+.++|.++.++||+.-.+ +|++.+..+| .+||+|||.-++..
T Consensus 240 i~e~---------~p~~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 240 ILEE---------APSPSLTP-----AQRDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EEEE---------CCCCCCCH-----HHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 0000 00001111 12456899999999999998654 9999975334 69999999888743
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=134.91 Aligned_cols=222 Identities=15% Similarity=0.220 Sum_probs=141.8
Q ss_pred cCCcEEEEecCCCCCC-------C-----------------CCCccEEEEcccchh---hHHHHHHHHHhCC--------
Q 019076 60 NKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGME---WCKIIEDYRQKHP-------- 104 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~-----------------q~~fDvilhK~t~~~---~~~~l~~y~~~~p-------- 104 (346)
+.|++.+.+|-+-.-. + ....|.|+.=..++. ....+.+++.+++
T Consensus 606 ~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~ 685 (1102)
T PLN02735 606 DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNG 685 (1102)
T ss_pred HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcC
Confidence 8999999988753221 1 123566665444322 2234455544332
Q ss_pred Ce-eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v-~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++ ++--++++|+.+.||..+-+.|.+ .+||+|++..+.+ .+++.+ ....++||+|+||.. |+ +|.+
T Consensus 686 gi~i~G~s~e~i~i~~DK~~~k~~l~~-------~GIp~p~~~~v~s-~eea~~--~a~~iGyPvvVKP~~--g~-gG~G 752 (1102)
T PLN02735 686 NVKIWGTSPDSIDAAEDRERFNAILNE-------LKIEQPKGGIARS-EADALA--IAKRIGYPVVVRPSY--VL-GGRA 752 (1102)
T ss_pred CeEEECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEeCC-HHHHHH--HHHhcCCCeEEEeCC--CC-CCCc
Confidence 43 456889999999999999999986 5899999987742 222222 235689999999986 33 4689
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEeecCCCcccchhhcccceeecccc
Q 019076 184 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKRELAKVVSVFRFPRV 250 (346)
Q Consensus 184 m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~v 250 (346)
|.+|++.++|... +.|+++|+||. +|+.+-|-+++| .+.+ ..+.-... .|.......
T Consensus 753 ~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~gvhsGds~ 822 (1102)
T PLN02735 753 MEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIEQ---------AGVHSGDSA 822 (1102)
T ss_pred EEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeeec---------cCccCCCcc
Confidence 9999999998653 35899999996 489999999975 2322 11110000 000000000
Q ss_pred cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCC
Q 019076 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 251 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. ......+++. ..+.++++|.+++++||..-+ ++|++++.+ | ++||+|||.-||
T Consensus 823 ~----~~P~~~L~~e-----~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~d-g-~~yviEiNpR~s 877 (1102)
T PLN02735 823 C----SLPTQTIPSS-----CLATIRDWTTKLAKRLNVCGLMNCQYAITPS-G-EVYIIEANPRAS 877 (1102)
T ss_pred E----EecCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeeEEEEEcCC-C-cEEEEEEeCCCC
Confidence 0 0000011110 135688999999999997644 599999632 3 699999999998
|
|
| >PRK08463 acetyl-CoA carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=122.05 Aligned_cols=177 Identities=12% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEc-cCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~-~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|++++ .++++++.+.||..+.+.+.+ .+||+|+. .... .+.+++.+ ....++||+|+||.. |+ +
T Consensus 97 ~Gi~~iGps~~~i~~~~DK~~~k~~l~~-------~gIpvpp~~~~~~~~~~~~~~~--~~~~igyPvvvKP~~--gg-G 164 (478)
T PRK08463 97 AGIIFIGPKSEVIRKMGNKNIARYLMKK-------NGIPIVPGTEKLNSESMEEIKI--FARKIGYPVILKASG--GG-G 164 (478)
T ss_pred CCCceecCCHHHHHhhCcHHHHHHHHHH-------cCCCCCCCccccCCCCHHHHHH--HHHHhCCCEEEEeCC--CC-C
Confidence 467766 668999999999999999986 58999774 3332 12222222 234689999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~-Slp~~~~~~~~~~~ 242 (346)
|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. + ....|. +... .
T Consensus 165 g~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~~--------~- 234 (478)
T PRK08463 165 GRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQR--------R- 234 (478)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcccc--------c-
Confidence 7899999999988542 35799999997 3676777777654 2 223331 1100 0
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
++.. ...+ +. .+++. ..+.+.++|.++.++||+.-+| +|++++. +| ++||+|||.-++..
T Consensus 235 -----~~~~--ie~~-P~~~l~~~-----~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~~~ 296 (478)
T PRK08463 235 -----HQKV--IEIA-PCPSISDN-----LRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQVE 296 (478)
T ss_pred -----cCce--EEEC-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCCC
Confidence 0000 0000 00 12111 1345788999999999988777 9999975 33 69999999888755
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=132.74 Aligned_cols=216 Identities=20% Similarity=0.351 Sum_probs=137.5
Q ss_pred cCCcEEEEecCCCC-CC------C-----------------CCCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRP-LS------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~-l~------~-----------------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++.+.+|.+-. .+ + ...+|.|+.-..+.. ...+..-+++ .|+.++ .++++
T Consensus 587 ~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~-~Gi~ilG~s~e~ 664 (1068)
T PRK12815 587 KEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEE-AGLTILGTSPDT 664 (1068)
T ss_pred HcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHH-CCCeEECCcHHH
Confidence 88999999987631 11 0 123455554333321 1222222333 466654 67999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .+++.+ ....++||+|+||.... +|.+|.+++++++|.
T Consensus 665 i~~~~DK~~f~~ll~~-------~GIp~P~~~~~~s-~ee~~~--~~~~igyPvVVKP~~~~---Gg~gv~iv~~~eeL~ 731 (1068)
T PRK12815 665 IDRLEDRDRFYQLLDE-------LGLPHVPGLTATD-EEEAFA--FAKRIGYPVLIRPSYVI---GGQGMAVVYDEPALE 731 (1068)
T ss_pred HHHHcCHHHHHHHHHH-------cCcCCCCeEEeCC-HHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHH
Confidence 9999999999999997 5899999998853 322222 23468999999998633 578999999999886
Q ss_pred cc-------CCCeEEEecccCCCeEEEEEEEC--CEEEE--EE-eecCCCcccchhhcccceeecccccccccccCCCCC
Q 019076 195 EL-------EPPMLLQEFVNHGGILFKIYIIG--ETIKV--VR-RFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 262 (346)
Q Consensus 195 ~l-------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~--~~-R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~ 262 (346)
++ ..|+++|||| .|..+-|.++. +.+.+ +. +.....+.. | ++. ....+..+
T Consensus 732 ~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~s-------G----ds~----~v~pp~~l 794 (1068)
T PRK12815 732 AYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHS-------G----DSI----AVLPPQSL 794 (1068)
T ss_pred HHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeeccCCcC-------C----Cee----EEECCCCC
Confidence 53 4689999999 47777776663 33332 11 111000000 0 000 00001112
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 263 DPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 263 ~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
++ ...+.+++++.++.++||+. +++||++++. +++||||||.-+|
T Consensus 795 ~~-----~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~---~~~yviEiNpR~s 840 (1068)
T PRK12815 795 SE-----EQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN---DEIYVLEVNPRAS 840 (1068)
T ss_pred CH-----HHHHHHHHHHHHHHHHcCCccEEEEEEEEEC---CcEEEEEEeCCCC
Confidence 11 12456899999999999965 6679999874 2699999999887
|
|
| >PRK06524 biotin carboxylase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=125.05 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=120.7
Q ss_pred HHHHHHHhCCCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCChhhHHHhhCCCCcEEEec
Q 019076 95 IIEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 95 ~l~~y~~~~p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~-~~~~~~~l~~~~l~fPvVvKP 172 (346)
.+|..++. -|+++ .=++.++..|+||..+-+++++ +|||||++..+..+ .+.+........++||+|+||
T Consensus 117 ~iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~-------aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP 188 (493)
T PRK06524 117 ETEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANE-------AGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQT 188 (493)
T ss_pred HHHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEE
Confidence 35555544 46776 6778899999999999998875 58999999875322 111112111224999999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-----C-CCeEEEecccCCCeEEEE--EEECCE-EEEE-EeecCCCcccchhhc-c
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-----E-PPMLLQEFVNHGGILFKI--YIIGET-IKVV-RRFSLPNVSKRELAK-V 241 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-----~-~p~v~QEfI~h~G~~~KV--~VvG~~-v~~~-~R~Slp~~~~~~~~~-~ 241 (346)
.. +| .|+++.+|.++++|.++ . ..+++|+||+ |+.+-| ++-++. +... .+..++.. +... .
T Consensus 189 ~~-GG--SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr 260 (493)
T PRK06524 189 PY-GD--SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYR 260 (493)
T ss_pred CC-CC--CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEcc
Confidence 84 33 48999999999998764 2 4589999995 777765 544432 3221 12212210 1100 0
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC----CcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG----LRLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG----l~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.|.+. ....++.+++. ..+.++++|.++.++|+ -++++||++++.++| ++|++|||.=|+=
T Consensus 261 ~G~~~--------~~i~PA~L~~e-----i~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 261 GGWCG--------NDIWPGALPPA-----QTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred CCeEE--------EEEccCCCCHH-----HHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 11110 00012222221 14568999999999993 455569999984333 7999999987774
|
|
| >TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=123.72 Aligned_cols=177 Identities=12% Similarity=0.209 Sum_probs=115.3
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.|.||..+.+.|.+ ++|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~Gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP~~--g~-g 164 (449)
T TIGR00514 98 SGFTFIGPSAESIRLMGDKVSAIETMKK-------AGVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKATA--GG-G 164 (449)
T ss_pred CCCcEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEeCC--CC-C
Confidence 46654 4789999999999999999986 589998764 332 2222222 234689999999987 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-Ee-ecCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV-RR-FSLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~-~R-~Slp~~~~~~~~~~~ 242 (346)
|++|.++.+.++|... ..++++||||. +++.+-+-|+++ ++... .+ .+... . ..
T Consensus 165 s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~------~-~~ 236 (449)
T TIGR00514 165 GRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGERDCSIQR------R-HQ 236 (449)
T ss_pred CCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEeccccCcee------c-cc
Confidence 7899999999887642 24699999995 467777777764 23222 11 00000 0 00
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+. ......+++. ..+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.-++..
T Consensus 237 ~~~~---------~~p~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~~ 296 (449)
T TIGR00514 237 KLLE---------EAPSPALTPE-----LRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQVE 296 (449)
T ss_pred ceEE---------ECCCCCCCHH-----HHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCCC
Confidence 0000 0000011110 2356889999999999997554 9999974 23 58999999888643
|
This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. |
| >PRK07178 pyruvate carboxylase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-11 Score=122.44 Aligned_cols=185 Identities=12% Similarity=0.177 Sum_probs=118.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ .+||+|++... -.+.++..+ ....++||+|+||..
T Consensus 91 a~~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~-------~GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~ 160 (472)
T PRK07178 91 AEICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIK-------AGVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATS 160 (472)
T ss_pred HHHHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCC
Confidence 334443 466654 668999999999999999986 58999877532 112222222 235689999999987
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEeecCCCcccch
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRFSLPNVSKRE 237 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~Slp~~~~~~ 237 (346)
|+ +|.+|.++.++++|.+. ..++++|+||. +++.+-|-|+++. + .+..|.- .+
T Consensus 161 --gg-Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~--s~---- 230 (472)
T PRK07178 161 --GG-GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC--SI---- 230 (472)
T ss_pred --CC-CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc--ce----
Confidence 44 57999999999998642 34799999996 5777777777643 2 2222210 00
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
. ..+... ........+++. ..+.+.++|.++.++||+.-.| +|++++.+ | ++||+|||.-++-
T Consensus 231 -~------~~~~~~--~e~~P~~~l~~~-----~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~ 294 (472)
T PRK07178 231 -Q------RRNQKL--IEIAPSPQLTPE-----QRAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQV 294 (472)
T ss_pred -E------ecCcce--EEECCCCCCCHH-----HHHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCC
Confidence 0 000000 000000011111 1356789999999999996655 99999743 3 6999999988765
Q ss_pred C
Q 019076 317 G 317 (346)
Q Consensus 317 ~ 317 (346)
.
T Consensus 295 ~ 295 (472)
T PRK07178 295 E 295 (472)
T ss_pred C
Confidence 4
|
|
| >PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=134.28 Aligned_cols=221 Identities=16% Similarity=0.222 Sum_probs=140.0
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchhhH---HHHH--HHHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEWC---KIIE--DYRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~~~---~~l~--~y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..- . ++..+|+|+.-+.++... ..+. ..+++ -|+.++
T Consensus 39 e~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~-~Gv~~~g 117 (1066)
T PRK05294 39 EEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK-YGVELIG 117 (1066)
T ss_pred HcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH-CCCEEEC
Confidence 789999999875421 0 123567777765443211 1121 12233 466665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
-++++++.+.||..+.+.|.+ .|||+|++..+.+ .+++.+ ....++||+|+||.. |. +|+++.++.+
T Consensus 118 ~~~~~i~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s-~~e~~~--~~~~ig~PvVVKP~~--g~-gg~Gv~iv~~ 184 (1066)
T PRK05294 118 AKLEAIDKAEDRELFKEAMKK-------IGLPVPRSGIAHS-MEEALE--VAEEIGYPVIIRPSF--TL-GGTGGGIAYN 184 (1066)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeeeeCC-HHHHHH--HHHHcCCCeEEEcCC--CC-CCCCeEEECC
Confidence 578999999999999999986 5899999998853 322322 234689999999985 43 6789999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCC-eEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... ..++++||||+ | ..+-+-|+.+ .+..+. +..+++..... .++. .. .
T Consensus 185 ~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~gih-~g~~-----~~----~ 250 (1066)
T PRK05294 185 EEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVC--SIENIDPMGVH-TGDS-----IT----V 250 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEe--eeeecccccee-cCCe-----EE----E
Confidence 9998653 24799999995 5 5777777644 232221 11111100000 0000 00 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+ ++ .+++ ...+.++++|.++.++||+. .++||+..+..+| ++||+|||.-++
T Consensus 251 ~-Pa~~l~~-----~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 251 A-PAQTLTD-----KEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred e-CCCCCCH-----HHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 0 11 1110 11346899999999999997 7789999975334 799999995554
|
|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=120.47 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 175 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a 175 (346)
.+..++ .|++++ .++++++.+.||..|-+.|++ ++||+|++..+. +.+++.+. ...++||+|+||..
T Consensus 79 ~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~~~P~VvKP~~- 146 (420)
T PRK00885 79 VDAFRA-AGLPIFGPTKAAAQLEGSKAFAKDFMAR-------YGIPTAAYETFT-DAEEALAY--LDEKGAPIVVKADG- 146 (420)
T ss_pred HHHHHH-CCCcEECcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEeCC-
Confidence 333443 467766 567899999999999999996 589999998874 33323222 24589999999975
Q ss_pred CCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 019076 176 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 176 ~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
|+ +|.++.++.+.+++.+. ..++++||||+ |..|-|.++.+
T Consensus 147 -~~-gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 147 -LA-AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred -CC-CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 33 67899999999887541 24799999995 78888877743
|
|
| >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=133.52 Aligned_cols=221 Identities=16% Similarity=0.240 Sum_probs=140.1
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchh--hHH-HH--HHHHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGME--WCK-II--EDYRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~--~~~-~l--~~y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..- . .+..+|+|+.-+.++. ++. .+ ....++ -|+.++
T Consensus 38 e~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~-~Gv~~~G 116 (1050)
T TIGR01369 38 EEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEK-YGVEVLG 116 (1050)
T ss_pred HcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHH-CCCEEEC
Confidence 889999999886421 0 1245788877544322 111 11 122233 467665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.+++++..+.||..+.+.|.+ .++|+|++..+.+ .++..+ ....++||+|+||.. |+ +|.++.++.|
T Consensus 117 ~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s-~~e~~~--~~~~igyPvIVKP~~--g~-gg~Gv~iv~~ 183 (1050)
T TIGR01369 117 TPVEAIKKAEDRELFREAMKE-------IGEPVPESEIAHS-VEEALA--AAKEIGYPVIVRPAF--TL-GGTGGGIAYN 183 (1050)
T ss_pred CCHHHHHHhCCHHHHHHHHHH-------CCCCCCCeeecCC-HHHHHH--HHHHhCCCeEEECCC--CC-CCCCeEEECC
Confidence 779999999999999999996 5899999998853 222222 234689999999985 43 6789999999
Q ss_pred hhhhhcc-----C----CCeEEEecccCCC-eEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL-----E----PPMLLQEFVNHGG-ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l-----~----~p~v~QEfI~h~G-~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... . .++++||||+ | ..+-+-|+++ .+.++ .+..++++....+. +. +. .
T Consensus 184 ~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g-~~-----i~----v 249 (1050)
T TIGR01369 184 REELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTG-DS-----IV----V 249 (1050)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEE--eeceeccCcceecC-ce-----EE----E
Confidence 9998653 1 4799999996 5 5777777644 22221 11112111000000 00 00 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+ ++ .+++ .....++++|.++.++||+.- ++||++.+.++| ++||+|||.-++
T Consensus 250 ~-Pa~tl~~-----~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 250 A-PSQTLTD-----KEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred e-cCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 0 11 1111 013458999999999999974 459999975334 799999997766
|
In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. |
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=120.80 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=115.5
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
-|+++ -.++++++.+.||..|.+.+.+ .+|++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gIp~pp~~~~~v~-~~~~~~~--~~~~~g~PvvvKP~~--g~-g 164 (451)
T PRK08591 98 SGFTFIGPSAETIRLMGDKVTAKATMKK-------AGVPVVPGSDGPVD-DEEEALA--IAKEIGYPVIIKATA--GG-G 164 (451)
T ss_pred CCCceECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECC--CC-C
Confidence 45654 4789999999999999999996 589998763 332 2222222 234689999999987 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EeecCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R~Slp~~~~~~~~~~~g 243 (346)
|.++.++.++++|.+. ...+++||||. +++.+-+-+++|. +... .|. . .+ .
T Consensus 165 s~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~-~-~~-----~---- 232 (451)
T PRK08591 165 GRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERD-C-SL-----Q---- 232 (451)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeccc-c-cc-----e----
Confidence 7899999999987642 24699999996 3667777777543 3222 110 0 00 0
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
..+.... .......+++ ...+.+.++|.++.++||+.-.+ ||++.+. +| ++||+|||.-++..
T Consensus 233 --~~~~~~~--~~~p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 233 --RRHQKVL--EEAPSPAITE-----ELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred --ecceeEE--EECCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 0000000 0000001111 12456899999999999987554 9999974 33 69999999888644
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-11 Score=130.13 Aligned_cols=177 Identities=12% Similarity=0.190 Sum_probs=119.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
.|+.++ .++++++.|.||..+.+.+.+ .+||+|++... ..+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~Gi~fiGps~e~i~~~~DK~~ar~la~~-------~GVPvpp~t~~~v~~~eea~~--~ae~iGyPvIVKP~~--GG-GG 165 (1143)
T TIGR01235 98 AGIIFIGPKAEVMDQLGDKVAARNLAIK-------AGVPVVPGTDGPPETMEEVLD--FAAAIGYPVIIKASW--GG-GG 165 (1143)
T ss_pred cCCcccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHH--HHHHcCCCEEEEECC--CC-CC
Confidence 466655 568999999999999999886 58999886521 122222222 234689999999976 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~g 243 (346)
++|.++.++++|... +.++++|+||+ +++.+.|-|+|+. ++.+.|. |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr----------- 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR----------- 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc-----------
Confidence 899999999887542 35799999996 4788999999775 3334442 1110
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.++... ..+ ++ .+++ ...+.+.++|.++.++||..-+| ||++++.+ | ++|++|||.-++..
T Consensus 234 ---r~qk~i--e~a-Pa~~L~~-----e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 234 ---RHQKVV--EVA-PAPYLSR-----EVRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRIQVE 296 (1143)
T ss_pred ---cCceEE--EEe-CCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCCCcc
Confidence 000000 000 10 1111 12356899999999999987666 99999753 3 69999999988754
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PLN02257 phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=117.85 Aligned_cols=210 Identities=13% Similarity=0.073 Sum_probs=123.1
Q ss_pred HHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 95 IIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 95 ~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+.+.+++ -|++++ -+.++++.+.||..+-+.|.+ ++||||++..+. +.+++.+. ...++||+|+||.
T Consensus 77 ~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~-------~GIptp~~~~~~-~~~e~~~~--~~~~g~PvVVKp~ 145 (434)
T PLN02257 77 GLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK-------YKIPTAKYETFT-DPAAAKKY--IKEQGAPIVVKAD 145 (434)
T ss_pred HHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEcC
Confidence 34444443 367765 667899999999999999986 699999998774 33323222 2468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCcccchh
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKREL 238 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~--~v~~~~R~Slp~~~~~~~ 238 (346)
. |+ .|.+|.++.+.+++.+. ..++++||||. |..+-|.++.| .+.... .+.+
T Consensus 146 ~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~~pl~----~~~d---- 212 (434)
T PLN02257 146 G--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGENAIPLE----SAQD---- 212 (434)
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCcEEEEE----eeee----
Confidence 3 32 57899999998876431 25799999995 88888866533 222211 1100
Q ss_pred hcccceeecccccccccccCCCCCCCCCCCCCChHHH----HHHHH---HHHHHhCCcEeE---EEEEEecCcCCeEEEE
Q 019076 239 AKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLL----ERLAR---ELRHRLGLRLFN---IDMIREHGMRDVFYVI 308 (346)
Q Consensus 239 ~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~----~~lA~---~l~~~lGl~lfG---vDvi~~~~~g~~~~Vi 308 (346)
...+|+++...+.+. .+...|. ..++ .+.. ++++. +.-++.|+.+.| +|++++...| ++||+
T Consensus 213 --hkr~~d~d~g~ntgg---mg~~sp~-p~l~-~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vL 284 (434)
T PLN02257 213 --HKRVGDGDTGPNTGG---MGAYSPA-PVLT-PELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLL 284 (434)
T ss_pred --cccccCCCCCCCCCC---CeeEecC-CCCC-HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEE
Confidence 011222222221110 0111111 0011 2222 33332 333577887666 7988862223 59999
Q ss_pred eccCCCCCCCCc----ccHHHHHHHHHHHHHh
Q 019076 309 DINYFPGYGKMP----DYEHIFTDFLLSLEQS 336 (346)
Q Consensus 309 DVN~fPg~~gv~----~~~~~l~~~l~~~i~~ 336 (346)
|+|.-||...-. .+..-|.+.+...+..
T Consensus 285 E~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 285 EYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred EEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 999999964222 2223355555555554
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=129.23 Aligned_cols=223 Identities=17% Similarity=0.237 Sum_probs=139.5
Q ss_pred cCCcEEEEecCCCCC-------C-----------------CCCCccEEEEcccchhhH---HHHH-H-HHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEWC---KIIE-D-YRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l-------~-----------------~q~~fDvilhK~t~~~~~---~~l~-~-y~~~~p~v~VI- 109 (346)
+.|++++.+|.+... . ....+|+|+.=+.++... ..+. + .+++ -|+.++
T Consensus 39 e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~-~gv~l~g 117 (1068)
T PRK12815 39 EEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ-YGVELLG 117 (1068)
T ss_pred HcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH-CCCEEEC
Confidence 789999998875421 0 123578887754432221 1111 1 2333 467665
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
-+++++..+.||..+-+.|.+ .|||+|++..+.+ .+++.+ ....++||+|+||.. |. +|.++.++.|
T Consensus 118 ~~~~~i~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~ee~~~--~~~~igyPvVVKP~~--g~-gG~Gv~iv~~ 184 (1068)
T PRK12815 118 TNIEAIQKGEDRERFRALMKE-------LGEPVPESEIVTS-VEEALA--FAEKIGFPIIVRPAY--TL-GGTGGGIAEN 184 (1068)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCcCCCCceeeCC-HHHHHH--HHHHcCCCEEEEECc--CC-CCCceEEECC
Confidence 578999999999999999986 5899999998853 222222 234689999999986 33 5688999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
+++|... ..++++||||+ | ..+-|-|+.|. +..+. +..+++.....+ | +.+. .
T Consensus 185 ~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~t--G----~s~~----v 250 (1068)
T PRK12815 185 LEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHT--G----DSIV----V 250 (1068)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEEE--eceecccccccC--C----ceEE----E
Confidence 9988653 14799999995 5 57888888653 32211 111211111100 0 0000 0
Q ss_pred cCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 257 ADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 257 ~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.++ .+++ .....++++|.++.++||+. .++||+..+.++| ++||+||| |.+.+.
T Consensus 251 -~Pa~~l~~-----~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s 306 (1068)
T PRK12815 251 -APSQTLTD-----DEYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRS 306 (1068)
T ss_pred -ecCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccc
Confidence 011 1110 01345889999999999994 4569999975333 79999999 555443
|
|
| >PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=117.67 Aligned_cols=178 Identities=14% Similarity=0.219 Sum_probs=112.9
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|++++ .++++++.+.||..|.+.|.+ ++|++|++... ..+.+++.+ ....++||+|+||.. |+ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~e~~~--~~~~~~~P~VvKP~~--g~-gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQA-------AGVPVVPGITTNLEDAEEAIA--IARQIGYPVMLKASA--GG-GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcCcCcCCHHHHHH--HHHHhCCCEEEEeCC--CC-CC
Confidence 456654 668999999999999999996 58999986322 122222222 134689999999986 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV-RRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~-~R~Slp~~~~~~~~~~~g~ 244 (346)
+++.++.+.++|.+. ..++++||||. ++..+-+.++++ .+... .+.. + +. ......
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~-~-~~----~~~~~~ 238 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWEREC-S-VQ----RRHQKV 238 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeecc-c-cc----ccccce
Confidence 899999999887542 35799999996 345666655543 23322 2210 0 00 000000
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.. ... ...+++ .....++++|.++.++||+. ++.+|++.+.+ | ++||+|||.-++.
T Consensus 239 ~~-----~~p----~~~~~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~~ 295 (450)
T PRK06111 239 IE-----EAP----SPFLDE-----ETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQV 295 (450)
T ss_pred EE-----ecC----CCCCCH-----HHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcCC
Confidence 00 000 000111 12356889999999999995 55599999753 3 5999999988864
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-10 Score=113.32 Aligned_cols=187 Identities=10% Similarity=0.086 Sum_probs=114.1
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~ 173 (346)
+.+..++ -+++++ .++++++.+.||..|.+.|.+ .+||+|++..+. +.+++.+. ...++|| +|+||.
T Consensus 80 ~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~-~~~~~~~~--~~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEE-AGIPVFGPTKEAAQLEGSKAFAKDFMKR-------YGIPTAEYEVFT-DPEEALSY--IQEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHH-CCCeEECCCHHHHHHHCCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHhcCCCeEEEEEC
Confidence 3344444 356655 678899999999999999986 589999999885 33223222 2468999 999997
Q ss_pred cCCCCCCceeeEEEeChhhhhcc------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCcccch
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRE 237 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l------------~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~--~R~Slp~~~~~~ 237 (346)
. |+ +|.++.++.+.+++.+. ..++++||||+ |..|-|.++ |+.+.+. .|.-..... ++
T Consensus 149 ~--~~-gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~-~~ 222 (423)
T TIGR00877 149 G--LA-AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRALE-GD 222 (423)
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeeccc-CC
Confidence 5 33 57899999999886541 24799999995 788887776 4444321 111000000 00
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCC---hHHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEE
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPP---RPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVI 308 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~l~~~lG------l~lfGvDvi~~~~~g~~~~Vi 308 (346)
.+. + .++ .+...|. ..++. .+..++++..+.++|+ -.++.+|++++.+ ++||+
T Consensus 223 ----~~~---~---~g~----~~~~~p~-~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~---g~~vi 284 (423)
T TIGR00877 223 ----KGP---N---TGG----MGAYSPA-PVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE---GPKVL 284 (423)
T ss_pred ----CCC---C---CCC----CceecCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC---CcEEE
Confidence 000 0 000 0011111 01111 1223456666666663 2567799999742 38999
Q ss_pred eccCCCCCC
Q 019076 309 DINYFPGYG 317 (346)
Q Consensus 309 DVN~fPg~~ 317 (346)
|||.-+|-.
T Consensus 285 Ein~R~g~~ 293 (423)
T TIGR00877 285 EFNCRFGDP 293 (423)
T ss_pred EEEccCCCc
Confidence 999999844
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=106.75 Aligned_cols=151 Identities=22% Similarity=0.294 Sum_probs=77.6
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-
Q 019076 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 118 l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l- 196 (346)
|.||+.+++.|.+ .+|++|.++.... .....+|+|+||..++ +|.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~-------~gi~~P~~~~~~~----------~~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKE-------LGIPVPTTLRDSE----------PEPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTT-------T-S--------EE----------SS--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHc-------cCCCCCCcccccc----------ccccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 6899999999996 5899995443321 1123789999999844 56889999999888754
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCCh
Q 019076 197 EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPR 272 (346)
Q Consensus 197 ~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~ 272 (346)
..-.++||||+ |.-+-+.++.+. +.++.|..+..-. ..|.| +++ .. + + ..+..
T Consensus 61 ~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~--------~~~~~----~G~-~~-~--~-----~~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDD--------GRFRY----CGG-IV-P--A-----DTPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEE----EEE-EE-S-----------HH
T ss_pred ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhcccc--------ceeee----ccc-cc-c--c-----CCchH
Confidence 33349999995 898888777533 3445665432100 00111 000 00 0 1 11225
Q ss_pred HHHHHHHHHHHHHh-CCc-EeEEEEEEecCcCCeEEEEeccCCC
Q 019076 273 PLLERLARELRHRL-GLR-LFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 273 ~~~~~lA~~l~~~l-Gl~-lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
+.+.++|.+++++| ||. ++|||+|.+. +++||||||-=|
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~---~~~~viEINPR~ 158 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD---GGPYVIEINPRF 158 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC---CcEEEEEEcCCC
Confidence 67999999999999 875 5589999875 369999999644
|
This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A. |
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=115.14 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHHHHhCCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 96 IEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 96 l~~y~~~~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
+.+..++ -|++++-|. .+.+.+.||..+-+.|.+ ++||||++..+. +.+++.+. ...++||+|+||..
T Consensus 84 lad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~-~~~ea~~~--~~~~~~PvVVKp~~ 152 (426)
T PRK13789 84 FADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSLMKE-------AKIPTASYKTFT-EYSSSLSY--LESEMLPIVIKADG 152 (426)
T ss_pred HHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEeeC-CHHHHHHH--HHhcCCCEEEEeCC
Confidence 3333333 467777554 477888999999999996 589999998774 33323222 23589999999973
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
++.|.+|.++.+.+++.+. ...+++||||. |..+-|.++.+
T Consensus 153 ---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~Sv~~~~d 206 (426)
T PRK13789 153 ---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEASIFAISD 206 (426)
T ss_pred ---CCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEEEEEEEEC
Confidence 3367999999999876541 12699999994 89999888754
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=125.72 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=116.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE-EccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~-i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+.++ .++++++.|.||..+.+.+.+ ++||+|++.. .-.+.+++.+ ....++||+|+||.. |+ +|
T Consensus 102 ~Gi~fiGps~eai~~~~DK~~~r~~l~~-------~GVPv~P~~~~~v~s~eea~~--~a~~iGyPvVVKP~~--Gg-GG 169 (1146)
T PRK12999 102 AGITFIGPTAEVLRLLGDKVAARNAAIK-------AGVPVIPGSEGPIDDIEEALE--FAEEIGYPIMLKASA--GG-GG 169 (1146)
T ss_pred cCCcccCCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCCCCHHHHHH--HHHHhCCCEEEEECC--CC-CC
Confidence 456644 678999999999999999986 5899876553 2122222222 235689999999987 43 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~~~~~~~~g 243 (346)
++|.++.++++|... +.++++|+||+ +++.+-|-++|+. +. ...|- |... . ...
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr------r-~qk 241 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR------R-HQK 241 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee------c-Ccc
Confidence 999999999987542 35799999997 4566777777643 22 22221 1100 0 000
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
... .+....+++ ...+.+.++|.++.+++|+.-.| +|++++.+ | ++|+||||.-++..
T Consensus 242 ~ie---------~aP~~~L~~-----~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqve 300 (1146)
T PRK12999 242 VVE---------IAPAPGLSE-----ELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQVE 300 (1146)
T ss_pred EEE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCCc
Confidence 000 000001111 12456889999999999997766 99999853 3 69999999887643
|
|
| >PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-10 Score=107.19 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=129.2
Q ss_pred ccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHH
Q 019076 80 FDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV 159 (346)
Q Consensus 80 fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l 159 (346)
.|+++.+.......++-.+|.+..-.+.+--+.++++.+.||..+++.+++ ++|++|++..+. +.+++..
T Consensus 67 Idv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~-t~~el~~-- 136 (329)
T PF15632_consen 67 IDVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVR-TADELKA-- 136 (329)
T ss_pred CeEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeC-CHHHHHH--
Confidence 466666665544445556665543223333568999999999999999996 689999999985 3333333
Q ss_pred HhhCCCCc---EEEecCcCCCCCCceeeEEEe-Chhhhhcc----------------------CCCeEEEecccCCCeEE
Q 019076 160 FEAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSEL----------------------EPPMLLQEFVNHGGILF 213 (346)
Q Consensus 160 ~~~~l~fP---vVvKP~~a~GS~~sh~m~lv~-~~~~L~~l----------------------~~p~v~QEfI~h~G~~~ 213 (346)
+.+.+++| +.+||..+. ++.|..++. +.+++..+ -+|++++||+ +|..|
T Consensus 137 a~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~G~Ey 211 (329)
T PF15632_consen 137 AYEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--PGPEY 211 (329)
T ss_pred HHHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--CCCeE
Confidence 23456666 999999844 568899998 44444432 2579999999 58888
Q ss_pred EEEEEC--CEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-
Q 019076 214 KIYIIG--ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR- 289 (346)
Q Consensus 214 KV~VvG--~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~- 289 (346)
-|=|+. +++. ++.|+-.. . . ..+. .++.+.++|.++++.+||+
T Consensus 212 SVD~l~~~G~viaaV~R~K~G-~-----~--------------------q~l~-------~~~~l~e~a~~l~~~~~l~g 258 (329)
T PF15632_consen 212 SVDCLADEGRVIAAVPRRKLG-R-----R--------------------QVLE-------NDEELIELARRLAEAFGLDG 258 (329)
T ss_pred EEEEEecCCEEEEEEEEEecC-c-----e--------------------eEEE-------ECHHHHHHHHHHHHHhCCCc
Confidence 877774 4454 56665431 1 0 0110 1355899999999999997
Q ss_pred EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 290 LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 290 lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
++||++..|. .| .++++|||.=|+
T Consensus 259 ~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 259 LFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred eEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 5689999864 34 699999998876
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=109.84 Aligned_cols=177 Identities=10% Similarity=0.037 Sum_probs=108.0
Q ss_pred Ceeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 105 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 105 ~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
|++++ .+.++++.+.||..|.+.|.+ ++|++|+++ ...+. .+... ....++||+|+||.. + +.|.
T Consensus 89 Gi~v~gps~~~a~~e~dK~~~k~~l~~-------~gIptp~~~~~~~~~-~e~~~--~~~~~~~PvVVKP~~--~-sggk 155 (435)
T PRK06395 89 GIKVASPTMEAAMIETSKMFMRYLMER-------HNIPGNINFNACFSE-KDAAR--DYITSMKDVAVKPIG--L-TGGK 155 (435)
T ss_pred CCcEECCCHHHHHHhhCHHHHHHHHHH-------CCcCCCcccceeCCh-HHHHH--HHHhhCCCEEEEeCC--C-CCCC
Confidence 67776 889999999999999999996 689998654 44322 22212 123468999999975 3 3678
Q ss_pred eeEEEeCh----hh-hh---c---cCCCeEEEecccCCCeEEEEEEE--CCEEEEE------EeecCCCcccchhhcccc
Q 019076 183 ELFLAYDR----FS-LS---E---LEPPMLLQEFVNHGGILFKIYII--GETIKVV------RRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 183 ~m~lv~~~----~~-L~---~---l~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~------~R~Slp~~~~~~~~~~~g 243 (346)
+|.++.+. ++ +. + ...++|+|||+ .|..|-|.++ |+.++.. .|-.-.+. ..+.|
T Consensus 156 GV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl--~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~~d~-----gp~tG 228 (435)
T PRK06395 156 GVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKM--TGEEFSLQAFSDGKHLSFMPIVQDYKRAYEGDH-----GPNTG 228 (435)
T ss_pred CeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeec--CCceEEEEEEEcCCeEEEecccceeeecccCCC-----CCccC
Confidence 99999542 22 22 1 13579999999 4777765444 6665431 11110000 00000
Q ss_pred eeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC------cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 244 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGL------RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl------~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. .++.++....-|. ++ ..+.+++++.++.++||. .++.+++++.. ++++|||+|.=+|
T Consensus 229 -------g-mG~~s~~~~~~p~---l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~---~gp~ViE~n~R~g 294 (435)
T PRK06395 229 -------G-MGSISDRDFSLPF---LSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP---NGVKVIEINARFA 294 (435)
T ss_pred -------C-CccccCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC---CCcEEEEEeCCCC
Confidence 0 0111100000010 11 134568899999999994 55679999864 2589999998888
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-09 Score=118.07 Aligned_cols=177 Identities=17% Similarity=0.247 Sum_probs=116.3
Q ss_pred CCeee-eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCc-EEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~V-IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~-~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+++ -.++++++.+.||..+-+.+.+ ++||+|+ +.++. +.+++.+ ....++||+|+||.. |+ +|
T Consensus 97 ~Gi~~iGps~ea~~~~~DK~~ar~ll~~-------~GVPt~p~~~lv~-s~dea~~--~a~~igyPvVVKP~~--gg-GG 163 (1201)
T TIGR02712 97 AGIVFVGPTPEQIRKFGLKHTARELAEA-------AGVPLLPGTGLLS-SLDEALE--AAKEIGYPVMLKSTA--GG-GG 163 (1201)
T ss_pred cCCcEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceeecC-CHHHHHH--HHHhcCCeEEEEECC--CC-CC
Confidence 35654 4668999999999999888886 5899855 55553 3222222 234689999999986 33 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Eee-cCCCcccchhhcccc
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVVS 243 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~-~R~-Slp~~~~~~~~~~~g 243 (346)
.+|.++.++++|... +.++++||||. +|+.+-|.+++|. +... .|. +... .+..
T Consensus 164 ~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr-------~~~k 235 (1201)
T TIGR02712 164 IGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR-------RNQK 235 (1201)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe-------cCcc
Confidence 899999999987531 34699999997 4688888888642 3322 221 1100 0000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
. +. .. +. .+++ ...+.+.++|.++.++||..-++ +|++.+..++ ++||+|||.=++..
T Consensus 236 ~-----ve----e~-Pap~l~~-----~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 236 V-----VE----ET-PAPNLPP-----ETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred E-----EE----Ec-CCCCCCH-----HHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 0 00 00 00 1111 12356889999999999987555 9999985433 69999999988643
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >COG0439 AccC Biotin carboxylase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=111.13 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=119.3
Q ss_pred HHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCChhhHHHhhCCCCcEEEecCc
Q 019076 97 EDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 97 ~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
.+-.++ .++..|-| +++|+++.||+.+-+++.+ +|||+|+...-. .+.++..+ ....++||||+||..
T Consensus 92 ae~~~~-~gl~fiGP~~~~i~~mgdK~~ar~~~~~-------aGVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~ 161 (449)
T COG0439 92 AEACAE-AGLTFIGPSAEAIRRMGDKITARRLMAK-------AGVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAA 161 (449)
T ss_pred HHHHHH-cCCeeeCcCHHHHHHhhhHHHHHHHHHH-------cCCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECC
Confidence 333344 46777776 4678888899999999986 688888876110 11112222 235688999999986
Q ss_pred CCCCCCceeeEEEeChhhhhcc------------CCC-eEEEecccCCCeEEEEEEECCEE----EEEEee-cCCCcccc
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL------------EPP-MLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKR 236 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l------------~~p-~v~QEfI~h~G~~~KV~VvG~~v----~~~~R~-Slp~~~~~ 236 (346)
+. +|.||.+|.+.++|.+. ..| +++|+||+. .+-+=+-|+||.. ....|- |+....
T Consensus 162 Gg---Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr~-- 235 (449)
T COG0439 162 GG---GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRRH-- 235 (449)
T ss_pred CC---CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCCc--
Confidence 33 57999999999998653 234 999999984 4456777888873 335554 443210
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
..+- ..+....++++ ....+.+.|+++++.+|-.-+| +.++.+. +| ++|++|+|.==+
T Consensus 236 -----------qkvi---eeapsp~~~~e-----~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlq 294 (449)
T COG0439 236 -----------QKVI---EEAPSPLLTEE-----LREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQ 294 (449)
T ss_pred -----------ccee---eecCCCCCCHH-----HHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccc
Confidence 0000 00000011110 1345778889999999988888 9999985 34 699999997554
Q ss_pred CC
Q 019076 316 YG 317 (346)
Q Consensus 316 ~~ 317 (346)
-.
T Consensus 295 ve 296 (449)
T COG0439 295 VE 296 (449)
T ss_pred cC
Confidence 43
|
|
| >PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=97.92 Aligned_cols=186 Identities=13% Similarity=0.170 Sum_probs=107.7
Q ss_pred ChHHHHHHhcCHHH----HHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 110 DPPDAIKHLHNRQS----MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 110 Dp~~ai~~l~dR~~----~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
|++.||..+.||=- ++++-.+++ ...+|.=.+.... +-. +. . ..-+||+|+| ++++- .+-|=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG----~e~FPLieQt~yp-nh~---em-~-s~~~fPvVvK--vG~~h-~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLG----PEKFPLIEQTYYP-NHR---EM-L-SAPRFPVVVK--VGHAH-AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHH----TTTS-B---EEES-SGG---GG-C-S-SSSSEEEE--ESS-S-TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhC----CcccccceeeecC-Chh---hh-c-cCCCCCEEEE--Ecccc-CceeEE
Confidence 78999999999942 333333343 2344444444332 111 11 1 2358999999 65433 234456
Q ss_pred EEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 186 LAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 186 lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
+|.|...+.++ +.-+-++.||+ .-.|++|--||+++.++.|+|+.. .|++|.|.--
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~N~gsa~------------ 130 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKANTGSAM------------ 130 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSSTTSSSEE------------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccccccchh------------
Confidence 99999888764 55678899995 477999999999999999999742 4566644111
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccCC-CCCCC--CcccHHHHHHHHHHHH
Q 019076 259 DADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINYF-PGYGK--MPDYEHIFTDFLLSLE 334 (346)
Q Consensus 259 ~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~f-Pg~~g--v~~~~~~l~~~l~~~i 334 (346)
+ .+.+..+..+.-..++++.+ ||+++++|+|... +| +.||+|||.. -++-| .++=...++|.+...+
T Consensus 131 ---l----Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km 201 (203)
T PF02750_consen 131 ---L----EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKM 201 (203)
T ss_dssp ---E----EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-TT----GGGHHHHHHHHHHHHHHHH
T ss_pred ---e----eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCCcccccchhHHHHHHHHHHHHHHHh
Confidence 1 12233455778888899999 9999999999875 56 6899999975 22222 1222345555555443
|
The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A. |
| >COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-09 Score=102.24 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=134.2
Q ss_pred cCCcEEEEecCCCC-CC-----------------------CCCCccEEEEcccchhh--H-HHHHH-HHHhCCCe-eeeC
Q 019076 60 NKGISFVAIDQNRP-LS-----------------------DQGPFDVVLHKLSGMEW--C-KIIED-YRQKHPEV-TILD 110 (346)
Q Consensus 60 ~~Gi~~v~id~~~~-l~-----------------------~q~~fDvilhK~t~~~~--~-~~l~~-y~~~~p~v-~VID 110 (346)
+.|+.++.|+.+-. +. .+...|.++.=+..+.. + -.+.+ ...+.-|+ +|.-
T Consensus 27 eeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs 106 (400)
T COG0458 27 EEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGS 106 (400)
T ss_pred hcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEec
Confidence 67999999988531 11 12446887777765321 1 11111 11111233 5689
Q ss_pred hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeCh
Q 019076 111 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 190 (346)
Q Consensus 111 p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~ 190 (346)
++++|+.+.||..+.+.+.++ ++++| +.+.. ..+...+ ....++||+|+||..+- ++.+..+++|+
T Consensus 107 ~~eaI~iaeDr~~fke~m~ei-------gi~~P-~~~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i~~n~ 172 (400)
T COG0458 107 DPEAIEIAEDKKLFKEAMREI-------GIPVP-SRIAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGIAYNE 172 (400)
T ss_pred CHHHhhhhhhHHHHHHHHHHc-------CCCCC-ccccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeEEeCH
Confidence 999999999999999999984 88999 33332 1111212 24568999999998744 45678999999
Q ss_pred hhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 191 FSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 191 ~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
++|..+ -.+++++|+|. ++..|.+-|+-|. +.++. ++.|+++....+.+.
T Consensus 173 eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc--~men~dp~gvhtgds--------------- 234 (400)
T COG0458 173 EELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVC--NMENLDPMGVHTGDS--------------- 234 (400)
T ss_pred HHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEE--eCCccccccccccce---------------
Confidence 998764 24689999996 4566766665333 22222 223332212211110
Q ss_pred CCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 259 DADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 259 ~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....|... .+ -...++..+.++.+.+|.. =.+|++..+.+++ +|||||||.=++
T Consensus 235 -i~vapaqt-l~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 235 -ITVAPAQT-LTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred -eeeccccc-cccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 00011000 00 0233566889999999988 1239999987655 899999996555
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-08 Score=99.85 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=73.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccC-cEEEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P-~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
+.+..++ -|++++ .+.++.+.+.||..|-+.|.+ ++||+| ++..+. +.+++.+.+ ..+ +|+|+||.
T Consensus 85 lad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~~-~~~ea~~~~--~~~-~PvVVKP~ 152 (486)
T PRK05784 85 VADVLRE-EGFPVFGASSKCARIEKSKVWARELMWK-------YSIPGRLRYKVFY-DVEEAAKFI--EYG-GSVAIKPA 152 (486)
T ss_pred HHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHHH-------cCcCCCccceEeC-CHHHHHHHH--hhc-CCEEEeeC
Confidence 4444443 467664 788999999999988888886 689997 566553 333232222 223 69999997
Q ss_pred cCCCCCCceeeEEEeChhh---------h----hc----------cCCCeEEEecccCCCeEEEEEEEC
Q 019076 174 VVDGSAKSHELFLAYDRFS---------L----SE----------LEPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~---------L----~~----------l~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
. ++.|.+|.++.+.++ + .. ...++|+|||+. |..|-|.++.
T Consensus 153 ~---~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~ 216 (486)
T PRK05784 153 R---QAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLT 216 (486)
T ss_pred C---CCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC--CeEEEEEEEE
Confidence 4 346899999999652 1 11 135799999995 8888887774
|
|
| >PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-09 Score=95.33 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=97.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
||....+++.++ +||+|+..... .+.++..+ ....++||+++||..+. ++++|.+++|+++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 677777888874 78888877541 12222222 23458999999998643 47999999999998753
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCcccchhhcccceeecccccccccccCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDA 260 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~VvG~~---v-~~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~ 260 (346)
+.++++++|+. +.+.+-|=|++|. + +...|- +.+. ..++.. . .+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~dsi---~------------~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQDSI---E------------EAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEEEE---E------------EES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-ccccce---e------------Eeecc
Confidence 57999999997 4567778788663 2 233332 1111 101000 0 00001
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 261 DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 261 ~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
.+++. ....++++|.++++.+|..-.| |=++.+..++ ++||+|+|..-+
T Consensus 132 ~L~~~-----~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 132 TLSDE-----ERQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp SS-HH-----HHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred ccchH-----HHHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 12111 1356889999999999998776 9999985333 899999997665
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G .... |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=94.46 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=135.2
Q ss_pred cCCcEEEEecCC--CCCC---------------------CCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 60 NKGISFVAIDQN--RPLS---------------------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 60 ~~Gi~~v~id~~--~~l~---------------------~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
..|++++.+|-= .|-. ++...|.|+.-.-. .....|.++.+ .|..||=...+.+
T Consensus 33 RLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA-I~td~L~elE~--~G~~VVP~ArAt~ 109 (394)
T COG0027 33 RLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA-IATDALVELEE--EGYTVVPNARATK 109 (394)
T ss_pred hcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh-hhHHHHHHHHh--CCceEccchHHHH
Confidence 789999999972 2211 12334544443322 33455555543 5678888899999
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc
Q 019076 117 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196 (346)
Q Consensus 117 ~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l 196 (346)
.++||..+-++..+ .-++||-++....+ .+++.+ ....++||+|+||+. +| -+||=+++.+++++.+.
T Consensus 110 ltMnRegiRrlAAe------eLglpTs~Y~fa~s-~~e~~~--a~~~iGfPcvvKPvM--SS-SGkGqsvv~~~e~ve~A 177 (394)
T COG0027 110 LTMNREGIRRLAAE------ELGLPTSKYRFADS-LEELRA--AVEKIGFPCVVKPVM--SS-SGKGQSVVRSPEDVEKA 177 (394)
T ss_pred hhhcHHHHHHHHHH------HhCCCCcccccccc-HHHHHH--HHHHcCCCeeccccc--cc-CCCCceeecCHHHHHHH
Confidence 99999765444443 13677888776642 222322 346799999999997 44 57999999999998763
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCC--c--ccchhhcccceeecccccccccccCCCC
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN--V--SKRELAKVVSVFRFPRVSSAAASADDAD 261 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~--~--~~~~~~~~~g~~~~~~vs~~~~~~~~~~ 261 (346)
..-+++++||+- +|-+-.+ ..|..-++ | +.+ .+..+|.| + ..
T Consensus 178 W~~A~~g~R~~~~RVIVE~fv~f---d~EiTlL------tvr~~~~~~~Fc~PIG-Hrq~dgdY--~-----------ES 234 (394)
T COG0027 178 WEYAQQGGRGGSGRVIVEEFVKF---DFEITLL------TVRAVDGTGSFCAPIG-HRQEDGDY--R-----------ES 234 (394)
T ss_pred HHHHHhcCCCCCCcEEEEEEecc---eEEEEEE------EEEEecCCCCcCCCcc-cccCCCCh--h-----------cc
Confidence 346999999974 3332221 11111111 0 000 01111211 0 01
Q ss_pred CCCCCCCCC--ChHHHHHHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 262 LDPGIAELP--PRPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 262 ~~~~~~~~p--~~~~~~~lA~~l~~~lG-l~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
|.|. +|. ..+..+.||+++.++|| ..+|||.+.+. ||+.++-||---|-=.|+--.
T Consensus 235 WQP~--~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmVTL 293 (394)
T COG0027 235 WQPQ--EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMVTL 293 (394)
T ss_pred cCcc--ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceEEE
Confidence 2221 111 12346789999999996 68999999985 468999999999987776543
|
|
| >PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-09 Score=92.27 Aligned_cols=137 Identities=24% Similarity=0.323 Sum_probs=73.4
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeCh-hhhhc--------cCCCeEEEecccCC-C
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSLSE--------LEPPMLLQEFVNHG-G 210 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~-~~L~~--------l~~p~v~QEfI~h~-G 210 (346)
.+|+|++.. +.+.+.+.+...+ . +|+||+.+.| +.++.++... ..+.. -..|+++|+|++.= .
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~--~-~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG--D-IVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS--S-EEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC--C-EEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 369999874 4555555555544 2 9999998554 6778888774 22222 24689999999843 2
Q ss_pred eEEEEEEECCEEE-EEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh---
Q 019076 211 ILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL--- 286 (346)
Q Consensus 211 ~~~KV~VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l--- 286 (346)
-|.|+++++++.. ++.|.+.. ++++.|. .. ++...+ . ++.+...++|.++...|
T Consensus 84 GDkRii~~nG~~~~av~R~P~~----gd~R~N~--------~~------Gg~~~~--~--~lt~~e~~i~~~i~~~L~~~ 141 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIPAK----GDFRSNL--------AA------GGSAEP--A--ELTEREREICEQIGPKLRED 141 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE--S----S-S---G--------GG------TSCEEE--E--E--HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCEEhHHeecCCCC----CCceeee--------cc------CCceee--c--CCCHHHHHHHHHHHHHHhhc
Confidence 2899999999975 55554321 3444331 11 222211 1 12344577777777666
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCC
Q 019076 287 GLRLFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 287 Gl~lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
|+-++|+|+| + + |+.|||.+
T Consensus 142 Gl~f~GiDvi---g--~--~l~EiNvt 161 (173)
T PF02955_consen 142 GLLFVGIDVI---G--D--KLTEINVT 161 (173)
T ss_dssp T--EEEEEEE---T--T--EEEEEE-S
T ss_pred CcEEEEEecc---c--c--ceEEEecc
Confidence 8999999999 3 2 68899965
|
3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A. |
| >PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=88.75 Aligned_cols=193 Identities=17% Similarity=0.246 Sum_probs=114.8
Q ss_pred HHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 100 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 100 ~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
++++++++++|| ...||+.+++.|.+-. .-.=-.|.|..+. +.+++.+.+...+ -+++||.. ||
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~--Gs- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDN--GS- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCC--CC-
Confidence 356789999998 4689999999999621 0112489998884 3344544444433 58999987 66
Q ss_pred CceeeEEEeChhh----------------------hhc-----c-CCCeEEEecccCC---C--eEEEEEEECC---EEE
Q 019076 180 KSHELFLAYDRFS----------------------LSE-----L-EPPMLLQEFVNHG---G--ILFKIYIIGE---TIK 223 (346)
Q Consensus 180 ~sh~m~lv~~~~~----------------------L~~-----l-~~p~v~QEfI~h~---G--~~~KV~VvG~---~v~ 223 (346)
.+.++..|....+ |.. + ..++++|+.|+-. | .||||.|--+ .|.
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 5666655544322 110 0 3489999999754 3 4999999933 354
Q ss_pred E---EEeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHH----HHHHHHHHHHhCC--cEeEE
Q 019076 224 V---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLL----ERLARELRHRLGL--RLFNI 293 (346)
Q Consensus 224 ~---~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~----~~lA~~l~~~lGl--~lfGv 293 (346)
+ +.|.+.++ .+.+ ++++++....... +............+ ..+|..+.+.+|. .-+|+
T Consensus 147 vtg~~~Rva~~~----~ivT--------N~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGi 214 (262)
T PF14398_consen 147 VTGIVARVAKPG----SIVT--------NLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGI 214 (262)
T ss_pred EEEEEEEEcCCC----Ccee--------ccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEE
Confidence 3 67766543 1221 1222211000000 00000000012233 4555666666774 67799
Q ss_pred EEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
|+-+|. .| ++++||||.-|+-..+...
T Consensus 215 Dl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 215 DLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 999995 45 8999999999997766664
|
|
| >COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=93.24 Aligned_cols=175 Identities=20% Similarity=0.211 Sum_probs=106.7
Q ss_pred CccEEEEcccc--h---hhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC
Q 019076 79 PFDVVLHKLSG--M---EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 153 (346)
Q Consensus 79 ~fDvilhK~t~--~---~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~ 153 (346)
.+|+-|.=... . ...+.+++|.+ +-|. +++||+.|.||+.++..|+. .+++|.|..+..
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~-nLG~----S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~~--- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVE-NLGC----SPRAIRVAADKRLTYKALRD--------AVKQPPTREWAE--- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhH-hhCC----CHHHHhHhhhHHHHHHHHhh--------hccCCCcccccc---
Confidence 46655544432 1 12355666643 3442 58999999999999999985 489998875421
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEE-EEECCEEEE--EEeecC
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKI-YIIGETIKV--VRRFSL 230 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV-~VvG~~v~~--~~R~Sl 230 (346)
..--.|+||..+||+ .++....+...+ +++||||+ |.-+.| ..+|+++.+ +-|.-+
T Consensus 137 ----------~~~k~ViKp~dgCgg---e~i~~~~~~pd~------~i~qEfIe--G~~lSVSL~~GEkv~pLsvNrQfi 195 (307)
T COG1821 137 ----------EPKKYVIKPADGCGG---EGILFGRDFPDI------EIAQEFIE--GEHLSVSLSVGEKVLPLSVNRQFI 195 (307)
T ss_pred ----------CCceEEecccccCCc---ceeeccCCCcch------hhHHHhcC--CcceEEEEecCCccccceechhhh
Confidence 122489999998875 344444333332 89999996 444444 455887654 222210
Q ss_pred CCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC-C-cEeEEEEEEecCcCCeEEEE
Q 019076 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG-L-RLFNIDMIREHGMRDVFYVI 308 (346)
Q Consensus 231 p~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG-l-~lfGvDvi~~~~~g~~~~Vi 308 (346)
.+ ..+.-.+.++ ..|. ..+..+.+.+.|.++.+.++ | .++|||++... .+|||
T Consensus 196 -~~-----------~~~~~~y~gg-------~~pi--~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvI 250 (307)
T COG1821 196 -IF-----------AGSELVYNGG-------RTPI--DHELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVI 250 (307)
T ss_pred -hh-----------ccceeeeccC-------cCCC--CcHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEE
Confidence 00 0011111111 1111 11234567788888888887 4 57799999862 58999
Q ss_pred eccCCCC
Q 019076 309 DINYFPG 315 (346)
Q Consensus 309 DVN~fPg 315 (346)
|||.-|.
T Consensus 251 EINpR~T 257 (307)
T COG1821 251 EINPRPT 257 (307)
T ss_pred EecCCCC
Confidence 9999887
|
|
| >PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=85.06 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=91.7
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeE
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGIL 212 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~ 212 (346)
.+||||++..+.+ .+++.+ +...++||+|+|+.. |.-.++|..++.+.+++.+. ..++++|+||+. .+.
T Consensus 4 ~gip~~~~~~i~~-~~~l~~--a~~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~E 77 (172)
T PF02222_consen 4 LGIPTAPYATIDS-LEDLEE--AAESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DRE 77 (172)
T ss_dssp TT--B-EEEEESS-HHHHHH--HHHHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEE
T ss_pred cCCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEE
Confidence 5899999999953 333433 234689999999875 33478999999999998764 579999999984 556
Q ss_pred EEEEEECCE---EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-
Q 019076 213 FKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL- 288 (346)
Q Consensus 213 ~KV~VvG~~---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl- 288 (346)
+-|.|+.+. +.++ +..-|+. .++.+.+. ..++.+++. .....+++|.++.+.|+.
T Consensus 78 iSvivaR~~~G~~~~y--p~~en~~------~~~il~~s--------~~Pa~i~~~-----~~~~a~~ia~~i~~~l~~v 136 (172)
T PF02222_consen 78 ISVIVARDQDGEIRFY--PPVENVH------RDGILHES--------IAPARISDE-----VEEEAKEIARKIAEALDYV 136 (172)
T ss_dssp EEEEEEEETTSEEEEE--EEEEEEE------ETTEEEEE--------EESCSS-HH-----HHHHHHHHHHHHHHHHTSS
T ss_pred EEEEEEEcCCCCEEEE--cCceEEE------ECCEEEEE--------ECCCCCCHH-----HHHHHHHHHHHHHHHcCcE
Confidence 677666322 2111 0001111 11221111 012233221 245678999999999975
Q ss_pred cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 289 RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 289 ~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.+|+|.+.+.. +|++.||.||--=|--.|
T Consensus 137 Gv~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 137 GVLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 67889999984 454599999986665443
|
This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A .... |
| >PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-07 Score=87.48 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=93.5
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.||..++..|.+ +||++|+++. +. ..+.||+||||..|.|. -|.+..++.|.++|...
T Consensus 125 ~dKk~~yk~L~~-------aGI~~Pk~~~---~p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEK-------AGIPYPKLFK---DP---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHH-------cCCCCceeec---Cc---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 344456676764 6999999884 11 24789999999874442 27899999999988643
Q ss_pred ---C---------CCeEEEecccCCCeEE--EEEEE--CCEE--EEEEeecCCCcccchhhcccceeeccccccccc---
Q 019076 197 ---E---------PPMLLQEFVNHGGILF--KIYII--GETI--KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA--- 255 (346)
Q Consensus 197 ---~---------~p~v~QEfI~h~G~~~--KV~Vv--G~~v--~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~--- 255 (346)
+ ..+++||||. |..| -+|+- -+++ ..+.|+---|++ |....+...+...
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~d--------g~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNLD--------GFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeeccccccc--------cccccChhhhhhcccC
Confidence 1 2357999996 6544 45554 4533 334433222321 2211111000000
Q ss_pred --ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC-------CcEeEEEEEEecCcCCeEEEEeccC
Q 019076 256 --SADDADLDPGIAELPPRPLLERLARELRHRLG-------LRLFNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 256 --~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG-------l~lfGvDvi~~~~~g~~~~ViDVN~ 312 (346)
....+...-...+. ..+.+.+++.++.++++ ..-|++|.+++.+ + .+||+|||.
T Consensus 255 p~~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 255 PRYIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred CceEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 00001111011111 24567888888888877 5667799998642 3 699999984
|
|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5e-07 Score=87.00 Aligned_cols=221 Identities=11% Similarity=0.181 Sum_probs=135.7
Q ss_pred CccEEEEcccc------hhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC
Q 019076 79 PFDVVLHKLSG------MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS 152 (346)
Q Consensus 79 ~fDvilhK~t~------~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~ 152 (346)
..|.||.|... +.++..+.-+. ..|++.||++.++....||--...-|.++..+++...+|.=.+...-..
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~q--yagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH- 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQ--YAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH- 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHH--hcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc-
Confidence 35777777543 13344445554 4579999999999999999655555555544544455554444433111
Q ss_pred CChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEE
Q 019076 153 LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVV 225 (346)
Q Consensus 153 ~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~ 225 (346)
+.+. ..-.||+||| +++|- -+-|-..|.|.++|.++ +.-.-+|-||+ .-.|++|--||..+.++
T Consensus 232 ----K~m~-s~~tyPvVVk--vghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 ----KEML-SQPTYPVVVK--VGHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAY 302 (488)
T ss_pred ----hhhc-cCCCCcEEEE--ecccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHH
Confidence 1111 2346999999 54442 23344677888888775 45567899996 35689999999999999
Q ss_pred EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDV 304 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~ 304 (346)
+|.|+- +.|++|.|.--..+++ | .+.-+.-...+.+.+ ||+++.||.+... .| +
T Consensus 303 mRtsIs----gnWKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-r 357 (488)
T KOG3895|consen 303 MRTSIS----GNWKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-R 357 (488)
T ss_pred hhhhhc----cCcccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-h
Confidence 999984 2466665410000000 0 112233334455555 5899999999864 45 5
Q ss_pred EEEEeccC--CCCCCC-CcccHHHHHHHHHHHHHh
Q 019076 305 FYVIDINY--FPGYGK-MPDYEHIFTDFLLSLEQS 336 (346)
Q Consensus 305 ~~ViDVN~--fPg~~g-v~~~~~~l~~~l~~~i~~ 336 (346)
=||+|||. .|=+.. .++-.+.+.+.+..++..
T Consensus 358 d~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq 392 (488)
T KOG3895|consen 358 DYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQ 392 (488)
T ss_pred hheeeeccccccccccchhHHHHHHHHHHHHHhhh
Confidence 68999997 455553 333345555555555443
|
|
| >PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-06 Score=85.10 Aligned_cols=175 Identities=14% Similarity=0.231 Sum_probs=103.1
Q ss_pred CCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 104 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 104 p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
-++++.=..++++...||..+-+.|.+ +||++|+++ . +. ..+.||+|+||.. | ++|++
T Consensus 107 ~~~p~~gn~~~l~~e~dK~~~k~~L~~-------aGIp~p~~~--~-~~---------~~i~~PvIVKp~~--g-~ggkG 164 (358)
T PRK13278 107 FKVPMFGNREILRWEADRDKERKLLEE-------AGIRIPRKY--E-SP---------EDIDRPVIVKLPG--A-KGGRG 164 (358)
T ss_pred CCCCcCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEe--C-CH---------HHcCCCEEEEeCC--C-CCCCC
Confidence 345565567889999999999999886 589999973 1 11 1257999999954 4 37899
Q ss_pred eEEEeChhhhhcc------------CCCeEEEecccCCCeEE--EEEEE--CCEE--EEEEeecCCCcccchhhccccee
Q 019076 184 LFLAYDRFSLSEL------------EPPMLLQEFVNHGGILF--KIYII--GETI--KVVRRFSLPNVSKRELAKVVSVF 245 (346)
Q Consensus 184 m~lv~~~~~L~~l------------~~p~v~QEfI~h~G~~~--KV~Vv--G~~v--~~~~R~Slp~~~~~~~~~~~g~~ 245 (346)
+.++.+++++.+. ...+++||||. |..| -+|+. -+++ ..+-|+-..|++ +.+
T Consensus 165 v~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d--------~~~ 234 (358)
T PRK13278 165 YFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYSPIKNRLELLGIDRRYESNID--------GLV 234 (358)
T ss_pred eEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEeccCCeEEEEeeceeeeeccc--------cee
Confidence 9999999887531 36799999995 6655 34554 3553 334444333321 112
Q ss_pred ecccccccc-----cccCCCCCCCC-CCCCCChHHHHHHHHHHHHH----h-C--CcEeEEEEEEecCcCCeEEEEeccC
Q 019076 246 RFPRVSSAA-----ASADDADLDPG-IAELPPRPLLERLARELRHR----L-G--LRLFNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 246 ~~~~vs~~~-----~~~~~~~~~~~-~~~~p~~~~~~~lA~~l~~~----l-G--l~lfGvDvi~~~~~g~~~~ViDVN~ 312 (346)
..+...+.. .....+.+ |. ..+. ..+.+.+++.++.++ + | ..-|++|++++.+ + .++|+|||.
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~-P~~~res-ll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d-~-~~~V~Eis~ 310 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNI-PVVLRES-LLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDN-L-EIVVFEISA 310 (358)
T ss_pred eccchhhhhcccCCceeEecce-eccchHh-HHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCC-C-CEEEEEEeC
Confidence 111100000 00000111 10 0111 123345555555554 5 2 3456799999643 3 589999998
Q ss_pred CC
Q 019076 313 FP 314 (346)
Q Consensus 313 fP 314 (346)
=+
T Consensus 311 R~ 312 (358)
T PRK13278 311 RI 312 (358)
T ss_pred cc
Confidence 77
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-06 Score=81.69 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=136.3
Q ss_pred ccCCcEEEEecCCCCCCC-CCCccEEEEcccch------------------hhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 59 TNKGISFVAIDQNRPLSD-QGPFDVVLHKLSGM------------------EWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 59 ~~~Gi~~v~id~~~~l~~-q~~fDvilhK~t~~------------------~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
...|+.+..+|++..=.- |---+++..-..|. .+-...-++++.+ +.|-=++++++...
T Consensus 21 ~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~~q 98 (375)
T COG0026 21 ARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRIAQ 98 (375)
T ss_pred HhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHHHh
Confidence 389999999998653221 21112222222221 1112223333333 56777899999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||+..-+.|.+ .|++||++.++.+ .+++... ...++||.|+|... |.=+++|-.++.+.+++...
T Consensus 99 dR~~eK~~l~~-------~Gi~va~~~~v~~-~~el~~~--~~~~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~~~~ 166 (375)
T COG0026 99 DRLVEKQFLDK-------AGLPVAPFQVVDS-AEELDAA--AADLGFPAVLKTRR--GGYDGKGQWRIRSDADLELRAAG 166 (375)
T ss_pred hHHHHHHHHHH-------cCCCCCCeEEeCC-HHHHHHH--HHHcCCceEEEecc--ccccCCCeEEeeCcccchhhHhh
Confidence 99998888886 5899999999963 3344443 35688999999875 44588999999988766541
Q ss_pred ----CCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCC
Q 019076 197 ----EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 271 (346)
Q Consensus 197 ----~~p~v~QEfI~h~G~~~KV~VvG~~-v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~ 271 (346)
..| |+++||+- .+.+-|.++-+. =.++.-+..-|+. ..|++.+... ++.+++ ..
T Consensus 167 ~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~~yP~~eN~h------~~gIl~~sia--------Pa~i~~-----~~ 225 (375)
T COG0026 167 LAEGGVP-VLEEFVPF-EREISVIVARSNDGEVAFYPVAENVH------RNGILRTSIA--------PARIPD-----DL 225 (375)
T ss_pred hhccCce-eEEeeccc-ceEEEEEEEEcCCCCEEEecccceee------ecCEEEEEEe--------cCcCCH-----HH
Confidence 234 99999975 444666666221 0111111111221 1122221111 122211 12
Q ss_pred hHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 272 RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 272 ~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++..+++|.++.+.|+. .++||-+.+..+ | +.+|.|+=-=|--.|
T Consensus 226 ~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEiAPRvHNSG 271 (375)
T COG0026 226 QAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEIAPRVHNSG 271 (375)
T ss_pred HHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeeccCCCCCcc
Confidence 45678999999999986 577899888753 3 799999876665444
|
|
| >COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-06 Score=80.98 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=99.2
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
+|-..+..+-||..++..|..+ +++.|...-+ +.+ ..-..++|.||+.+.|. + +-++.-
T Consensus 111 ~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~--------e~~--~~gekt~IlKPv~GaGG--~--~el~~~ 169 (389)
T COG2232 111 EPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKI--------EPL--EEGEKTLILKPVSGAGG--L--VELVKF 169 (389)
T ss_pred CcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhh--------hhh--hhcceeeEEeeccCCCc--e--eeeccc
Confidence 5555999999999999998875 5566643221 111 11245899999985442 2 333322
Q ss_pred hhhhhccCCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCC
Q 019076 190 RFSLSELEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 265 (346)
Q Consensus 190 ~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~ 265 (346)
.++.. ..++++|||| .|+-+-|-+|++. ...+-+.-+ ++. ....+.|.| .+.+.|-
T Consensus 170 ~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~~----~~~~~~f~Y-----------~GNlTP~ 229 (389)
T COG2232 170 DEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DGL----RGEYSQFVY-----------KGNLTPF 229 (389)
T ss_pred ccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-ccc----cccccccee-----------ccCcCCC
Confidence 22222 3789999999 5999999999773 333433322 110 011122222 2344442
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 266 IAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 266 ~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
..+ ..+++++||..+-..|||--- |||++... . ++|||||| |=+.|.
T Consensus 230 ~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~--gpyViEVN--PR~qGt 277 (389)
T COG2232 230 PYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-K--GPYVIEVN--PRIQGT 277 (389)
T ss_pred cch--hhHHHHHHHHHHHHHhccccccccceEeec-C--CcEEEEec--Ccccch
Confidence 111 135689999999999998644 79999974 2 48999999 444443
|
|
| >PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-06 Score=77.67 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=114.1
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cC------CCC---hhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KD------SLS---IPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~-~~------~~~---~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
||.+....+.||..+.+++.+ .+|++|+.+... .+ ..+ +.+.+ ......++|+||.. ||
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~-------~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~viKP~~--G~- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD-------YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFL-RKHAPDRFVIKPAN--GS- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHH-------hcCCCCceEEeccceEEecccccCHHHHHHHH-HhccCCcEEEEeCC--CC-
Confidence 888999999999999999886 588999843211 10 111 11211 22234799999986 66
Q ss_pred CceeeEEEeChhh---------hh----ccC-CCeEEEecccCC---------C-eEEEEEEE-C-CEE---EEEEeecC
Q 019076 180 KSHELFLAYDRFS---------LS----ELE-PPMLLQEFVNHG---------G-ILFKIYII-G-ETI---KVVRRFSL 230 (346)
Q Consensus 180 ~sh~m~lv~~~~~---------L~----~l~-~p~v~QEfI~h~---------G-~~~KV~Vv-G-~~v---~~~~R~Sl 230 (346)
.++++.++...++ +. .+. ..+++||+|.-. + -.+||.++ . +.+ .++.|-+-
T Consensus 85 ~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~ 164 (285)
T PF14397_consen 85 GGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGR 164 (285)
T ss_pred CccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCC
Confidence 6889988877652 11 111 279999998644 1 16798877 3 232 34677542
Q ss_pred CCcccchhhccccee---eccc-ccccc-cccCCCCC--CCC------CCCCCChHHHHHHHHHHHHHh-CCcEeEEEEE
Q 019076 231 PNVSKRELAKVVSVF---RFPR-VSSAA-ASADDADL--DPG------IAELPPRPLLERLARELRHRL-GLRLFNIDMI 296 (346)
Q Consensus 231 p~~~~~~~~~~~g~~---~~~~-vs~~~-~~~~~~~~--~~~------~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi 296 (346)
.......+. .+|.. +-.. +...+ ....+... .|. ....|.=+++.++|.++++.+ ++.+.|.||.
T Consensus 165 ~~~~~DN~~-~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDva 243 (285)
T PF14397_consen 165 GGSGVDNFH-QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVA 243 (285)
T ss_pred CCCcccccC-CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEE
Confidence 111101111 11111 1111 00000 00011111 121 124554556889999988665 8999999999
Q ss_pred EecCcCCeEEEEeccCC--CCCCCC
Q 019076 297 REHGMRDVFYVIDINYF--PGYGKM 319 (346)
Q Consensus 297 ~~~~~g~~~~ViDVN~f--Pg~~gv 319 (346)
++. . ++++||.|+. ||+.-.
T Consensus 244 it~-~--Gp~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 244 ITE-D--GPVLLEGNARWDPGLMIQ 265 (285)
T ss_pred EcC-C--CcEEEEeeCCCCCCcHhh
Confidence 985 3 3899999999 998733
|
|
| >COG3919 Predicted ATP-grasp enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=82.78 Aligned_cols=170 Identities=15% Similarity=0.212 Sum_probs=100.5
Q ss_pred eChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC-CCc-eeeEE
Q 019076 109 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS-AKS-HELFL 186 (346)
Q Consensus 109 IDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS-~~s-h~m~l 186 (346)
+=+....+-+.+|=.+|..-.++ ++++|+|+.+++..+ . ....|.||+|+||-.+.|. ..+ -+...
T Consensus 103 lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d-~----~~~el~FPvILKP~mgg~~~~~araKa~~ 170 (415)
T COG3919 103 LPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID-T----LVDELTFPVILKPGMGGSVHFEARAKAFT 170 (415)
T ss_pred CCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh-h----hhhheeeeEEecCCCCCcceeehhhheee
Confidence 33466777777777777777765 789999999964222 1 2346999999999864421 111 12344
Q ss_pred EeChhhhhcc---------CCCeEEEecccCCCeEEEE---EEECCE-E-EEEEeecCCCcccchhhcccceeecccccc
Q 019076 187 AYDRFSLSEL---------EPPMLLQEFVNHGGILFKI---YIIGET-I-KVVRRFSLPNVSKRELAKVVSVFRFPRVSS 252 (346)
Q Consensus 187 v~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV---~VvG~~-v-~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~ 252 (346)
+.+.++++.. ...+|+||||+-+|---.+ ++-.++ | .+..|+-.. + +.
T Consensus 171 a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq-------------y--Pv--- 232 (415)
T COG3919 171 AADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ-------------Y--PV--- 232 (415)
T ss_pred ccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc-------------C--Cc---
Confidence 5556666532 3459999999977653222 223222 2 112222110 0 00
Q ss_pred cccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 253 AAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 253 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+........++++...+-+.|+++-+..+- .|..||+..|..+| .|.++|||--|+
T Consensus 233 ------dfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 233 ------DFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred ------ccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 001111123444444455666666665554 45569999998777 799999999987
|
|
| >PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-07 Score=89.13 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=35.8
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc----cCCCeEEEecccCC----Ce-
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNHG----GI- 211 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~----l~~p~v~QEfI~h~----G~- 211 (346)
.+|+|..+..+........ ...-.--+|+||.. |+ .+.|+.++.+.+++.+ ...++|+|+||+.+ |+
T Consensus 42 ~~p~t~~l~~~~~~~~~~~-~~~~~~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYF-EKNPKNLWIVKPSN--GS-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHH-HTTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHH-hcCCCCEEEEeccc--cC-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 5788887743222222211 11112359999976 54 6899999999999885 46789999999865 65
Q ss_pred -EEEEEEE
Q 019076 212 -LFKIYII 218 (346)
Q Consensus 212 -~~KV~Vv 218 (346)
|+|+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 7899887
|
This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A. |
| >KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-05 Score=78.41 Aligned_cols=175 Identities=18% Similarity=0.294 Sum_probs=112.7
Q ss_pred CCCeeeeChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 103 HPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 103 ~p~v~VIDp~-~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
..|+..|-|+ ++|+...||...-+++.. ++||+=+-+ -...+.+.+ .. ....++||+++|+.. +| +
T Consensus 93 ~~Gi~FiGP~~~aIrdMG~K~~sk~im~~-------AgVp~vpG~~g~~qs~e~~-~~-~a~eIgyPvMiKa~~-GG--G 160 (670)
T KOG0238|consen 93 DAGITFIGPPPSAIRDMGDKSTSKQIMKA-------AGVPLVPGYHGEDQSDEEA-KK-VAREIGYPVMIKATA-GG--G 160 (670)
T ss_pred HcCCeEECCCHHHHHHhcchHHHHHHHHh-------cCCccccCcccccccHHHH-HH-HHHhcCCcEEEEecc-CC--C
Confidence 4678888765 678888899888788775 455543322 111111112 11 346799999999985 33 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCEE----EEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~v----~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+.+|-++.+++++.+. +..++++.||. +.|-+-|-|.||+. ..-+|- |+.. + +
T Consensus 161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSvQR------R-n- 231 (670)
T KOG0238|consen 161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSVQR------R-N- 231 (670)
T ss_pred CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccchhh------h-h-
Confidence 7899999999887653 45799999998 46667888888883 222221 2110 0 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+. .... ...| .++ ....+.+.|+++++++|-.-+| |.+|.|.. +.+|++|+|.-=.
T Consensus 232 ------QK-----iiEE-aPap---~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~--~~FyFmEmNTRLQ 290 (670)
T KOG0238|consen 232 ------QK-----IIEE-APAP---NLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK--DNFYFMEMNTRLQ 290 (670)
T ss_pred ------hh-----hhhc-CCCC---CCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC--CcEEEEEeeceee
Confidence 00 0000 0001 111 1345789999999999999999 99999973 3799999997544
|
|
| >PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=71.23 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcE-EEecCcCCCCCCceeeEEEeChhhhhc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPL-VAKPLVVDGSAKSHELFLAYDRFSLSE--- 195 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPv-VvKP~~a~GS~~sh~m~lv~~~~~L~~--- 195 (346)
+|..+-+.+++ ++|||+++.+.. +.++..+.+.. ..+|+ |+| +||.+.+.+|.++.+.++..+
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViK---adGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIK---ADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEE---ESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEc---cCCCCCCCEEEEeCCHHHHHHHHH
Confidence 45555666775 699999888875 44444444443 46788 999 557778899999999865322
Q ss_pred -c---------CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019076 196 -L---------EPPMLLQEFVNHGGILFKIYII--GETIK 223 (346)
Q Consensus 196 -l---------~~p~v~QEfI~h~G~~~KV~Vv--G~~v~ 223 (346)
+ ..++|+|||+ .|..+-++++ |+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3579999999 5998887666 77754
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00023 Score=70.93 Aligned_cols=138 Identities=19% Similarity=0.312 Sum_probs=99.6
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh-cCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL-HNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l-~dR~~~ 124 (346)
..++++|+ +.+++++.|-|+.||.. -..-.|.+ .|++|.=|.....++ .+|..+
T Consensus 53 ~~lv~fA~------~~~idl~vVGPE~pL~~-----------------GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~fa 107 (428)
T COG0151 53 EALVAFAK------EKNVDLVVVGPEAPLVA-----------------GVVDALRA--AGIPVFGPTKAAAQLEGSKAFA 107 (428)
T ss_pred HHHHHHHH------HcCCCEEEECCcHHHhh-----------------hhHHHHHH--CCCceeCcCHHHHHHHhhHHHH
Confidence 56677777 99999999999988752 22233332 578999888766655 488888
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--------
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------- 196 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------- 196 (346)
-..+.+ ++||++.+-+.. +.+.+.+.+ ...+.|+|+| ++|-+.+-++.++.+.++-.+.
T Consensus 108 K~fm~k-------~~IPta~y~~f~-~~e~a~ayi--~~~g~piVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~ 174 (428)
T COG0151 108 KDFMKK-------YGIPTAEYEVFT-DPEEAKAYI--DEKGAPIVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGN 174 (428)
T ss_pred HHHHHH-------cCCCcccccccC-CHHHHHHHH--HHcCCCEEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhc
Confidence 888886 689999888775 444444443 3578999999 4577778899999998664331
Q ss_pred -----CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019076 197 -----EPPMLLQEFVNHGGILFKIYII--GETIK 223 (346)
Q Consensus 197 -----~~p~v~QEfI~h~G~~~KV~Vv--G~~v~ 223 (346)
...+|++||+ +|..+-++++ |+.+.
T Consensus 175 ~fg~~g~~VVIEEfL--~GeE~S~~a~~DG~~v~ 206 (428)
T COG0151 175 AFGSAGARVVIEEFL--DGEEFSLQAFVDGKTVI 206 (428)
T ss_pred cccCCCCcEEEEecc--cceEEEEEEEEcCCeEE
Confidence 1459999999 5887766554 77654
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.2e-05 Score=76.90 Aligned_cols=176 Identities=14% Similarity=0.206 Sum_probs=112.2
Q ss_pred CCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccc-cCcEEEEccCCCChhhH-HHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVR-VPRQMVITKDSLSIPDQ-VFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~-~P~~~~i~~~~~~~~~~-l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++.|=| +.+|+.+.||...-.++.+ .++| +|-+.= ..++..+. -....++||+.+|... +| +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~-------AgVp~VPG~~g---~~qd~~~~~~~A~eiGyPVlIKAsa-GG--G 164 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAE-------AGVPTVPGYHG---PIQDAAELVAIAEEIGYPVLIKASA-GG--G 164 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHH-------cCCCccCCCCC---cccCHHHHHHHHHhcCCcEEEEecc-CC--C
Confidence 67888876 5788888999876666665 3454 343331 11222111 1246799999999874 33 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+.+|-++.+.+++.+. +.-|+++.|+.. -|-+-+-|+||+ |+.-.|- |+.. +
T Consensus 165 GKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQR------R--- 234 (645)
T COG4770 165 GKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQR------R--- 234 (645)
T ss_pred CCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchhh------h---
Confidence 8999999999887653 457999999985 555788888887 2333442 3310 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
|++-- ..+...-+++. ....+-+-|++++++.|-.-+| |-+|.+.+ + .+|++|+|.-=..
T Consensus 235 -----hQKVI--EEAPaP~l~~~-----~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQV 295 (645)
T COG4770 235 -----HQKVI--EEAPAPFLTEE-----TREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQV 295 (645)
T ss_pred -----cchhh--hcCCCCCCCHH-----HHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeecceec
Confidence 11000 00000011111 1345788999999999999999 99999864 4 4999999975443
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.6e-05 Score=78.04 Aligned_cols=172 Identities=17% Similarity=0.282 Sum_probs=110.4
Q ss_pred CCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEEEEccCCCChhhHH-HhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~-P~~~~i~~~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|+..|-| ++.++.+.||..--..-.+. ++|+ |-+- ...+.+.+.+ -..+.+||+++|-.+++ +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~---~~~~~~ee~~~fa~~~gyPvmiKA~~GG---G 170 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTD---GPIETIEEALEFAEEYGYPVMIKAAAGG---G 170 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCC---CCcccHHHHHHHHHhcCCcEEEEEccCC---C
Confidence 67888877 67788888998654444432 4432 2110 0111122211 13568999999987644 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~~ 242 (346)
+++|-+|.++++|.+. +..++++.||. +.+-+-|-++||+ |+.++|- |... +
T Consensus 171 GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQR------R--- 240 (1149)
T COG1038 171 GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQR------R--- 240 (1149)
T ss_pred ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchhh------c---
Confidence 8999999999988653 45799999998 4666889999988 4556663 2210 0
Q ss_pred ceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccC
Q 019076 243 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~ 312 (346)
|+.- -..+....++++ ...++-+-|.++++..|-.-+| +.++.+.+ | ++|+||||-
T Consensus 241 -----hQKV--VE~APa~~L~~~-----~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNP 297 (1149)
T COG1038 241 -----HQKV--VEVAPAPYLSPE-----LRDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNP 297 (1149)
T ss_pred -----ccee--EEecCCCCCCHH-----HHHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecC
Confidence 1100 000101122221 2456788999999999999999 99999864 4 689999994
|
|
| >KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=68.47 Aligned_cols=175 Identities=16% Similarity=0.259 Sum_probs=108.2
Q ss_pred CCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 103 HPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 103 ~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~-P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
..|+..|-| |+-|..+.||..--++-.+. ++|+ |-|= -+. ..++..+.. ...++|+|.|-.. |.
T Consensus 129 ~AGi~fiGPspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPit-t~~EA~eF~--k~yG~PvI~KAAy--GG- 195 (1176)
T KOG0369|consen 129 DAGIRFIGPSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPIT-TVEEALEFV--KEYGLPVIIKAAY--GG- 195 (1176)
T ss_pred hcCceEeCCCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCcc-cHHHHHHHH--HhcCCcEEEeecc--cC-
Confidence 357777765 67788889998655554443 4432 1110 000 111122222 3578999999655 44
Q ss_pred CceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCcccchhhcc
Q 019076 180 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKV 241 (346)
Q Consensus 180 ~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~~~~~~~ 241 (346)
++++|-+|..-+++++. +..+.++.|++. -+-+-|-.+||+ ++.++|- |... +
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQR------R-- 266 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQR------R-- 266 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchhh------h--
Confidence 58999999998776542 467999999986 455788888888 4455653 2110 0
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fP 314 (346)
|+.- -..+.-..++|. ..+.+..-|.++++..|-.-+| +.+++|. .| ++|+||||.-=
T Consensus 267 ------HQKV--VEiAPA~~Lp~~-----vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g-~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 267 ------HQKV--VEIAPAKTLPPE-----VRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KG-RHYFIEVNPRL 325 (1176)
T ss_pred ------hcce--eEecccccCCHH-----HHHHHHHHHHHHHHHhCcccCCceEEEEcc-CC-CEEEEEecCce
Confidence 1100 000101122221 1345677899999999999999 9999986 45 68999999643
|
|
| >PF14305 ATPgrasp_TupA: TupA-like ATPgrasp | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.06 Score=50.38 Aligned_cols=184 Identities=15% Similarity=0.214 Sum_probs=101.0
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
|.-.-...|.||+..-.-+++.. .....|+.+-+..+.++ +....|.-++|+||..+||+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~----i~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDD----IDFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhh----hhhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 34445567788987766666531 23345555544323222 23456778999998874442 344443
Q ss_pred hhh-----hh----c-----------------cCCCeEEEecccCC-C---eEEEEEEECCEEEEEEeecCCCcccchhh
Q 019076 190 RFS-----LS----E-----------------LEPPMLLQEFVNHG-G---ILFKIYIIGETIKVVRRFSLPNVSKRELA 239 (346)
Q Consensus 190 ~~~-----L~----~-----------------l~~p~v~QEfI~h~-G---~~~KV~VvG~~v~~~~R~Slp~~~~~~~~ 239 (346)
... ++ . +.+-+++++|+... | +|||+||.++++.+..--+-..- ..
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~---~~- 151 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG---NH- 151 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC---Ce-
Confidence 321 11 1 13459999999987 4 59999999997543221111100 00
Q ss_pred cccceee--cccccccccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 240 KVVSVFR--FPRVSSAAASADDADLDPGIAELP-PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 240 ~~~g~~~--~~~vs~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
....|+ +..+.-.... . . ....+.| .-+++.++|.+|++- ..+.-||+-..+ ++.|+=|+=.+||-
T Consensus 152 -~~~~yd~dw~~l~~~~~~--~--~-~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~---~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 152 -KRNFYDRDWNRLPFRSDY--P--P-DEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD---GKIYFGELTFTPGA 220 (239)
T ss_pred -EEEEECcccCCCccccCC--C--C-CCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC---CcEEEEeeecCCCC
Confidence 001111 1111000000 0 0 0111222 235688899988886 557789999754 37999999999996
Q ss_pred CCCccc
Q 019076 317 GKMPDY 322 (346)
Q Consensus 317 ~gv~~~ 322 (346)
.-.+-+
T Consensus 221 G~~~~~ 226 (239)
T PF14305_consen 221 GFEPFF 226 (239)
T ss_pred cCCCCC
Confidence 644433
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=66.06 Aligned_cols=194 Identities=21% Similarity=0.316 Sum_probs=119.6
Q ss_pred Ceeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++.|+ -+|+.|...-||+...+.|.++ +|..|.+-.+.+ -++... -...++||+++.|-.-- | +-.
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~--F~~~VgYP~lvRPSYVL-S--GaA 1083 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK--FAEKVGYPVLVRPSYVL-S--GAA 1083 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH--HHHhcCCceEeccccee-c--chh
Confidence 34443 4689999999999999999975 677787655532 222212 13568999999995321 1 236
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCcccchhhcccceeeccccccc
Q 019076 184 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 253 (346)
Q Consensus 184 m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~-v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~ 253 (346)
|.+++++++|+.. +.|+|+-.||+ +++.+-|=.|+.. -.++.--|- . ..|.| +.++
T Consensus 1084 Mnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~haiSE-H------vEnAG------VHSG 1149 (1435)
T KOG0370|consen 1084 MNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLVHAISE-H------VENAG------VHSG 1149 (1435)
T ss_pred hhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEEEehhh-h------hhccc------ccCC
Confidence 9999999999864 57999999998 5676665444322 111111121 1 11111 1111
Q ss_pred ccccCCCCC-CCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEecc-----CCCCCCCCcccHH
Q 019076 254 AASADDADL-DPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDIN-----YFPGYGKMPDYEH 324 (346)
Q Consensus 254 ~~~~~~~~~-~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN-----~fPg~~gv~~~~~ 324 (346)
++.+ -|. ..+. ..+.+++++.+++++|..+ =|++-+|..+ |...|||-| .||-..+.-++
T Consensus 1150 -----DAtlv~Pp-q~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKtlgv-- 1218 (1435)
T KOG0370|consen 1150 -----DATLVLPP-QDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKTLGV-- 1218 (1435)
T ss_pred -----ceeEeCCc-hhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehhcCc--
Confidence 1111 110 0010 1345889999999999986 4778888653 579999999 58877766655
Q ss_pred HHHHHHHHHHHh
Q 019076 325 IFTDFLLSLEQS 336 (346)
Q Consensus 325 ~l~~~l~~~i~~ 336 (346)
-|++.-.+.+..
T Consensus 1219 dfi~~At~~i~g 1230 (1435)
T KOG0370|consen 1219 DFIALATRAIMG 1230 (1435)
T ss_pred hHHHHHHHHHhC
Confidence 344444444444
|
|
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=62.94 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=60.3
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCC-CCCCceeeEEEeChhhhhcc----
Q 019076 123 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVD-GSAKSHELFLAYDRFSLSEL---- 196 (346)
Q Consensus 123 ~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~-GS~~sh~m~lv~~~~~L~~l---- 196 (346)
..-++|++ .+||||++.++. +.++..+ ....++ ||+|+||..-. |...+.++.++.+.+++.+.
T Consensus 7 ~aK~ll~~-------~GIpvp~~~~~~-~~~ea~~--~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l 76 (386)
T TIGR01016 7 QAKQIFAK-------YGIPVPRGYVAT-SVEEAEE--IAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKL 76 (386)
T ss_pred HHHHHHHH-------cCCCCCCceeeC-CHHHHHH--HHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHH
Confidence 34456664 699999999884 3332222 234578 99999997322 33345689999888776431
Q ss_pred -C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019076 197 -E---------------PPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 -~---------------~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
. ..+++|||+++ |+.+-|-+++|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 77 LGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred hccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 1 14899999964 888888888875
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0065 Score=60.60 Aligned_cols=90 Identities=21% Similarity=0.134 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCC-CCcEEEecCcC-CCCCCceeeEEEeChhhhhcc--
Q 019076 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
.+.+.++|.+ ++||+|++.++. +.++..+ ....+ +||+|+||..- .|.+.+++|.+..+.+++.+.
T Consensus 5 e~~ak~lL~~-------~gIpvp~~~~~~-~~~ea~~--~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~ 74 (388)
T PRK00696 5 EYQAKELFAK-------YGVPVPRGIVAT-TPEEAVE--AAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAK 74 (388)
T ss_pred HHHHHHHHHH-------cCCCCCCCeeeC-CHHHHHH--HHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHH
Confidence 3455566664 699999999885 3333322 22457 89999999742 344567799999888776431
Q ss_pred ----C-----------C---CeEEEecccCCCeEEEEEEECCE
Q 019076 197 ----E-----------P---PMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 ----~-----------~---p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
. . .+++|+|+++ |..+-+.+..|.
T Consensus 75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~ 116 (388)
T PRK00696 75 QILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDR 116 (388)
T ss_pred HhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcC
Confidence 0 1 2899999964 778877777665
|
|
| >KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.007 Score=61.64 Aligned_cols=73 Identities=15% Similarity=0.359 Sum_probs=47.4
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCC------CeEEE
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG------GILFK 214 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~------G~~~K 214 (346)
..|+++++..|-+++.+......-.. +||||-. |+.+-|+.++.....+.+ ..|+++|+||... -.|.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEE
Confidence 68999988545444444333212222 8899874 445668888887776653 5699999998654 34667
Q ss_pred EEEE
Q 019076 215 IYII 218 (346)
Q Consensus 215 V~Vv 218 (346)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 6665
|
|
| >PF14243 DUF4343: Domain of unknown function (DUF4343) | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.6 Score=39.59 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred cEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcc
Q 019076 167 PLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV 241 (346)
Q Consensus 167 PvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~ 241 (346)
|+-+||.. .+ +.-.=.++...+.|... +.++++.|.++ =...||+||+.++++...+..- +
T Consensus 3 ~~FiKP~~--~~-K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~-~--------- 68 (130)
T PF14243_consen 3 PVFIKPPD--DD-KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG-D--------- 68 (130)
T ss_pred CeEeCCCC--CC-CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC-C---------
Confidence 78889874 12 22111233334444432 56899999996 3778999999999988665421 1
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHH-HHhCCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 242 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR-HRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 242 ~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~-~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
....+ ..+.+......+. ....-.-|.+||=+.. +| +.+|||+|.+=+
T Consensus 69 ------------------~~~~~------~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 69 ------------------WDLEP------DPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------cccCC------CHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 01110 1222333333332 1556778889998874 44 689999997654
|
|
| >KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.1 Score=53.73 Aligned_cols=56 Identities=13% Similarity=0.294 Sum_probs=43.3
Q ss_pred CCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc------------CCCeEEEecccCC----Ce--EEEEEEECCE
Q 019076 163 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHG----GI--LFKIYIIGET 221 (346)
Q Consensus 163 ~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l------------~~p~v~QEfI~h~----G~--~~KV~VvG~~ 221 (346)
+=..+.|+||- +.+.+.|+.++.+.+.+.+. +..+++|-||+++ |. ++|.||+=.+
T Consensus 197 ~~~~~wIvKP~---~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPA---SKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEeccc---cccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 45789999975 45588999999988886554 3569999999987 44 5588888655
|
|
| >PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.078 Score=53.93 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=84.7
Q ss_pred cCCcEEEEecCCCCCC-------CC-CCccEEEEcccchhh-------HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHH
Q 019076 60 NKGISFVAIDQNRPLS-------DQ-GPFDVVLHKLSGMEW-------CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~q-~~fDvilhK~t~~~~-------~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~ 124 (346)
++|++.+..|++. |+ .+ .+.|+|.=|+.+.+. ...++.|.. ..+++++|+.+ +.++||..
T Consensus 211 ~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~--~av~~vgsfrs-~l~hnK~i- 285 (445)
T PF14403_consen 211 EHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRD--GAVCMVGSFRS-QLLHNKII- 285 (445)
T ss_pred HcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhc--CCeEEecchhh-hhhhhhHH-
Confidence 8999999999965 33 12 378999888766322 344566654 45999999655 66799953
Q ss_pred HHHHHh-cc---ccC-CCC--ccccCcEEEEcc-------CCCChhhH-HHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 125 LQDVAD-LN---LSD-CNG--KVRVPRQMVITK-------DSLSIPDQ-VFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 125 ~~~L~~-l~---~~~-~~~--~I~~P~~~~i~~-------~~~~~~~~-l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
...|.+ .. ++. .+. .=.+|-|..+.. ...++.+. ++.. ==+|+||.-.. +||||++=-+
T Consensus 286 FaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r---~~lVLKP~D~Y---gg~GV~~G~e 359 (445)
T PF14403_consen 286 FAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANR---DRLVLKPNDEY---GGKGVYIGWE 359 (445)
T ss_pred HHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhch---hcEEecccccc---CCCCeEECCc
Confidence 444432 11 110 000 125899998854 11222222 1222 25999998744 4688877544
Q ss_pred --hhhhh----c-cCCCeEEEecccCC
Q 019076 190 --RFSLS----E-LEPPMLLQEFVNHG 209 (346)
Q Consensus 190 --~~~L~----~-l~~p~v~QEfI~h~ 209 (346)
.++.+ + ++.|+|+|||+.-.
T Consensus 360 ~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 360 TSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 34433 3 36799999999764
|
|
| >KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.23 Score=56.38 Aligned_cols=194 Identities=12% Similarity=0.189 Sum_probs=114.7
Q ss_pred HHHHHhCCCeeeeChHH-HHHHhcCHHHHHHHHHhccccC---CCCccccCcEE-----E-EccC------CCChhhHH-
Q 019076 97 EDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVADLNLSD---CNGKVRVPRQM-----V-ITKD------SLSIPDQV- 159 (346)
Q Consensus 97 ~~y~~~~p~v~VIDp~~-ai~~l~dR~~~~~~L~~l~~~~---~~~~I~~P~~~-----~-i~~~------~~~~~~~l- 159 (346)
-+.+..+ +++.|-||. ++.-+.||+...-+-+..+++- ...+|.++..- + +..+ ..+..+.+
T Consensus 155 Pe~L~~~-~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLe 233 (2196)
T KOG0368|consen 155 PERLSAN-GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLE 233 (2196)
T ss_pred HHHHHhc-CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHH
Confidence 3444443 588998886 4566779998777766655431 12345444432 1 1100 01111222
Q ss_pred HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecC
Q 019076 160 FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSL 230 (346)
Q Consensus 160 ~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Sl 230 (346)
+...+|||+.+|--.++ ++.|+-.+.+.+++..+ ..|+.+-.-.. ++|-+-|-.++|++--+.--.-
T Consensus 234 aae~IGfPvMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfg 309 (2196)
T KOG0368|consen 234 AAEKIGFPVMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFG 309 (2196)
T ss_pred HHHhcCCceEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeec
Confidence 23459999999977644 46889999999998875 45787777775 4666777777777421111011
Q ss_pred CCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEe
Q 019076 231 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVID 309 (346)
Q Consensus 231 p~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViD 309 (346)
.|.+. ... |+.- -..-++.+.| ...-..+++-|.++++..|--=+| |..+....+| +||++|
T Consensus 310 RDCSi---QRR------hQKI---IEEAPatIap----~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLE 372 (2196)
T KOG0368|consen 310 RDCSI---QRR------HQKI---IEEAPATIAP----PETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLE 372 (2196)
T ss_pred ccchH---HHH------HHHH---HhhCCcccCC----HHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEe
Confidence 12110 000 1100 0000112211 111356899999999999999999 9999987665 899999
Q ss_pred ccC
Q 019076 310 INY 312 (346)
Q Consensus 310 VN~ 312 (346)
.|-
T Consensus 373 LNP 375 (2196)
T KOG0368|consen 373 LNP 375 (2196)
T ss_pred cCc
Confidence 994
|
|
| >PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.066 Score=49.63 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=44.8
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC--CCceeeEE-EeChhhhhc
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS--AKSHELFL-AYDRFSLSE 195 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS--~~sh~m~l-v~~~~~L~~ 195 (346)
++-....++|.. .||++|++.++.+ .++..+ ....++||+++|-..++=. ++..++.+ +.++++++.
T Consensus 10 L~e~e~~~lL~~-------yGI~~~~~~~~~~-~~ea~~--~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~ 79 (222)
T PF13549_consen 10 LTEAEAKELLAA-------YGIPVPPTRLVTS-AEEAVA--AAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVRE 79 (222)
T ss_dssp E-HHHHHHHHHT-------TT------EEESS-HHHHHH--HHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHH
T ss_pred cCHHHHHHHHHH-------cCcCCCCeeEeCC-HHHHHH--HHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHH
Confidence 344566777774 6999999999853 322222 2346899999997654311 13345666 667766643
Q ss_pred c-----------C-----CCeEEEecccCCCeEEEEEEECC
Q 019076 196 L-----------E-----PPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 196 l-----------~-----~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
. . ..+++|+.++++|..+-|.+.-|
T Consensus 80 a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~D 120 (222)
T PF13549_consen 80 AFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRD 120 (222)
T ss_dssp HHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEEC
Confidence 2 1 24899999987788877665544
|
|
| >PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.77 Score=41.93 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=43.5
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcC-CCCCCceeeEEEeChhhhhcc---------C---------
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---------E--------- 197 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l---------~--------- 197 (346)
++|++|+..++.+ .++..+.. ..++. ++|+|+.+- +|--.+-++-++.+.++.... .
T Consensus 14 ~gi~vp~g~~a~s-~eea~~~~--~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~ 90 (202)
T PF08442_consen 14 YGIPVPRGVVATS-PEEAREAA--KELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGE 90 (202)
T ss_dssp TT----SEEEESS-HHHHHHHH--HHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEE
T ss_pred cCCCCCCeeecCC-HHHHHHHH--HHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCC
Confidence 6999999999963 33333322 23444 689999544 455566789999998776542 1
Q ss_pred --CCeEEEecccCCCeEEEEEEE
Q 019076 198 --PPMLLQEFVNHGGILFKIYII 218 (346)
Q Consensus 198 --~p~v~QEfI~h~G~~~KV~Vv 218 (346)
.-++++|+++|..-.|=-+++
T Consensus 91 ~v~~vlvee~v~~~~E~Ylsi~~ 113 (202)
T PF08442_consen 91 KVNKVLVEEFVDIKREYYLSITL 113 (202)
T ss_dssp EE--EEEEE---CCEEEEEEEEE
T ss_pred EeeEEEEEecCccCceEEEEEEe
Confidence 137999999987555533333
|
They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E .... |
| >PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.1 Score=40.33 Aligned_cols=91 Identities=18% Similarity=0.349 Sum_probs=61.9
Q ss_pred CeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHH
Q 019076 199 PMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 199 p~v~QEfI~h~-G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
-+++.+|++-+ +..|||||-+.+++++..+.. +... .+. .... .....+.+
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~~~-~L~---------------------~~~~-----~I~~~I~~ 202 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NYYD-FLE---------------------ELKE-----EIRSKIQE 202 (299)
T ss_pred EEEEeccccCCccceEEEEEECCEEEEEecccc-cccH-HHH---------------------HHHH-----HHHHHHHH
Confidence 37899998766 889999999999887655544 3210 000 0000 01223444
Q ss_pred HH-HHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 278 LA-RELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 278 lA-~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.. ..+...+.+.=|-|||.+... .++.++||+|-|-+-.+
T Consensus 203 F~~~~I~~~~~~~~~v~DVyi~~~-~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 203 FFEEHIKPKFPLDNYVFDVYITRD-KDKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHhhCCCCCEEEEEEEcCC-CCeEEEEEecCCcccCc
Confidence 44 566888999999999999864 24899999999988554
|
It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate []. |
| >KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.85 E-value=32 Score=36.48 Aligned_cols=130 Identities=14% Similarity=0.218 Sum_probs=83.8
Q ss_pred cccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHH-hcCHHHHHHHHHhccccCC
Q 019076 58 HTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKH-LHNRQSMLQDVADLNLSDC 136 (346)
Q Consensus 58 ~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~-l~dR~~~~~~L~~l~~~~~ 136 (346)
+.++.|.+|.+-|+.||..- +.+ .+. .-|+++.-|..--.. =.+|..+-..+.+
T Consensus 64 ~~e~~I~lVvvGPE~PL~~G---------l~~--------~l~--~~gi~~FGPs~~aAqlE~sK~fsK~fm~r------ 118 (788)
T KOG0237|consen 64 CKEHNINLVVVGPELPLVAG---------LAD--------VLR--SAGIPCFGPSKQAAQLEASKNFSKDFMHR------ 118 (788)
T ss_pred HHHcceeEEEECCchhhhhh---------hhh--------hhh--ccCcceeCchHHHHHhhhhHHHHHHHHHh------
Confidence 34899999999999988531 111 111 235777777643333 3466555555554
Q ss_pred CCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh-hhcc------------CCCeEEE
Q 019076 137 NGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS-LSEL------------EPPMLLQ 203 (346)
Q Consensus 137 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~-L~~l------------~~p~v~Q 203 (346)
++|||-++-... +++.....+. ..--+++|+| |+|-+-+.++.+..+.++ ++.+ ..-+|++
T Consensus 119 -~~IPTA~y~~ft-~~e~a~sfi~-~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViE 192 (788)
T KOG0237|consen 119 -HNIPTAKYKTFT-DPEEAKSFIQ-SATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIE 192 (788)
T ss_pred -cCCCcceeeeeC-CHHHHHHHHH-hCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehh
Confidence 689999887764 4444433332 2223789999 889988999999988654 3322 3569999
Q ss_pred ecccCCCeEEEEEEECC
Q 019076 204 EFVNHGGILFKIYIIGE 220 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~ 220 (346)
||.+ |-...++..=|
T Consensus 193 E~LE--GeEvS~laftD 207 (788)
T KOG0237|consen 193 ELLE--GEEVSFLAFTD 207 (788)
T ss_pred hhcC--cceEEEEEEec
Confidence 9995 66666655533
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=2.1 Score=43.07 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=52.1
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCc-CCCCCCceeeEEEeChhhhhcc-----C-------------
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLV-VDGSAKSHELFLAYDRFSLSEL-----E------------- 197 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~-a~GS~~sh~m~lv~~~~~L~~l-----~------------- 197 (346)
.||++|++.++.+ .++..+ ....++|| +|+|..+ ..|-..+.++.+..+.+++... .
T Consensus 15 yGIpvp~~~~~~~-~~ea~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~ 91 (392)
T PRK14046 15 FGVAVPRGALAYS-PEQAVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGK 91 (392)
T ss_pred cCCCCCCceEECC-HHHHHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCC
Confidence 6999999998853 333322 23468995 5999754 3455677889998888776542 0
Q ss_pred --CCeEEEecccCCCeEEEEEEECC
Q 019076 198 --PPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 198 --~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
.-+++|+++++ ++.|-+-+.-|
T Consensus 92 ~v~~vlVe~~~~~-~~E~ylgi~~D 115 (392)
T PRK14046 92 PVQRVYVETADPI-ERELYLGFVLD 115 (392)
T ss_pred eeeeEEEEEecCC-CcEEEEEEEEC
Confidence 12899999985 45555544433
|
|
| >PHA02117 glutathionylspermidine synthase domain-containing protein | Back alignment and domain information |
|---|
Probab=86.57 E-value=9.8 Score=38.39 Aligned_cols=163 Identities=20% Similarity=0.314 Sum_probs=89.7
Q ss_pred Hhhhcc-cccCCcEEEEecCCCC-CCCCC---------CccEEEEcccchhhHHHHHHHH--HhCCCeeeeChHHHHHHh
Q 019076 52 ARYILT-HTNKGISFVAIDQNRP-LSDQG---------PFDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 52 ~r~~~~-~~~~Gi~~v~id~~~~-l~~q~---------~fDvilhK~t~~~~~~~l~~y~--~~~p~v~VIDp~~ai~~l 118 (346)
++|+.. +++.|++...+++..- +.+.| +.|++ -|+..-+|... .+|. -.+.++.+|||+-++- +
T Consensus 193 ~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~l-fKlyPwE~~~~-e~~~~~l~~~~~~~ieP~wk~l-l 269 (397)
T PHA02117 193 IAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMC-FKLYPWEWMME-DEFSAEILVSQTRFIEPAWKMM-L 269 (397)
T ss_pred HHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeee-eecccHHHHhh-CcchhhhhhCCcEEechhHHhH-h
Confidence 444444 4578888777666431 11222 23333 35554333211 1221 0135699999987765 4
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecCcCCCCCCceeeEEEeChhhhhcc-
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l- 196 (346)
.|| .++.+|.++.- .+.--.|.+. +.+..... ...++ -..|.||+. |- ++.+|.|+.+...+...
T Consensus 270 snK-alLalLW~l~p---~hp~LLpay~----~~d~~~~~--~~~~~~~~yV~KPi~--gR-EG~nV~i~~~g~~~~~~~ 336 (397)
T PHA02117 270 SNK-GLLALLYERYP---DCPWLVPAYV----EDDFDREN--LFTLENPKYVSKPLL--SR-EGNNIHIFEYGGESEDTD 336 (397)
T ss_pred ccH-HHHHHHHHhcC---CCcccccccc----cccccccc--hhccccCCEEeccCC--Cc-CCCCEEEEECCeEEeccC
Confidence 888 66778877531 1222333222 11100000 00011 149999998 54 77889998664333222
Q ss_pred ----CCCeEEEecccCC---Ce--EEEEEEECCEEE-EEEeecC
Q 019076 197 ----EPPMLLQEFVNHG---GI--LFKIYIIGETIK-VVRRFSL 230 (346)
Q Consensus 197 ----~~p~v~QEfI~h~---G~--~~KV~VvG~~v~-~~~R~Sl 230 (346)
+.++|.|+|++=+ |. .+=++|||++.. +..|.+.
T Consensus 337 g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 337 GNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 4689999999853 33 568899999865 4577653
|
|
| >COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.01 E-value=2.3 Score=41.50 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
+|..-+.+|.+ ++|+.|+-+ +++++ +.-|+|||..-|-| +++-.++.+.+++..-
T Consensus 124 ~~~~~~~lLek-------Agi~~P~~~---~~Pee---------Idr~VIVK~pgAkg---gRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEK-------AGLRIPKKY---KSPEE---------IDRPVIVKLPGAKG---GRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHH-------cCCCCCccc---CChHH---------cCCceEEecCCccC---CceEEEEcCHHHHHHHHHH
Confidence 33344556664 689999855 23332 34499999875554 8999999999887542
Q ss_pred --C---------CCeEEEeccc
Q 019076 197 --E---------PPMLLQEFVN 207 (346)
Q Consensus 197 --~---------~p~v~QEfI~ 207 (346)
+ ....+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 1 2477888884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 346 | ||||
| 2q7d_A | 346 | Crystal Structure Of Human Inositol 1,3,4-Trisphosp | 2e-21 | ||
| 2qb5_A | 347 | Crystal Structure Of Human Inositol 1,3,4-Trisphosp | 2e-21 | ||
| 2odt_X | 328 | Structure Of Human Inositol 1,3,4-Trisphosphate 56- | 1e-20 | ||
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase Complexed M | 5e-05 |
| >pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Amppnp And Mn2+ Length = 346 | Back alignment and structure |
|
| >pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Adp And Mn2+ Length = 347 | Back alignment and structure |
|
| >pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase Length = 328 | Back alignment and structure |
|
| >pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp Length = 324 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-107
Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 23/335 (6%)
Query: 26 PERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLH 85
+ VGY L+ KK K L R +G+ V ++ +RP+ +QGP DV++H
Sbjct: 16 LKGKRVGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIH 69
Query: 86 KLS------------GMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNL 133
KL+ +E ++Y HPE +LDP AI+ L +R + + +
Sbjct: 70 KLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEA 129
Query: 134 SDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192
+ ++ P M +T + + GL P + K V G+ SHE+ + +++
Sbjct: 130 YMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEG 188
Query: 193 LSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSS 252
L+ ++PP ++Q F+NH +L+K++++GE+ VV+R SL N S + F VS
Sbjct: 189 LNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK 248
Query: 253 AAASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 310
+S+ +LD G+ E P ++ L+R LR LG+ LF ID+I + VIDI
Sbjct: 249 PESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDI 307
Query: 311 NYFPGYGKMPDYEHIFTDFLLSLEQSKCRKRPATA 345
N FPGY + ++ + + ++ Q + AT
Sbjct: 308 NAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAATG 342
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-95
Identities = 62/334 (18%), Positives = 125/334 (37%), Gaps = 32/334 (9%)
Query: 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPF 80
+ + + + L K+K+ + + L D+ P
Sbjct: 4 GSMTTKQTVSLFIWLPESKQKTLFISTKNHTQF------ELNNIIFDVTLSTELPDKEPN 57
Query: 81 DVVLHKLSG-MEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGK 139
++ + + + Y + HP+V L+ + +R+ + +
Sbjct: 58 AIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NN 110
Query: 140 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPP 199
+ +P + + + L LP + KP G+ +H++ + ++ + ++ P
Sbjct: 111 IPIPNSFSVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFP 169
Query: 200 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVV-------SVFRFPRV-- 250
L Q ++NH + K++ IG T+K R SLPNV + + V + +P
Sbjct: 170 CLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVI 229
Query: 251 -------SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRD 303
+SA DP + L + LA ++R LG++L ID I+E+ +
Sbjct: 230 DKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN 289
Query: 304 VFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSK 337
V+D+N FP YG D++ L +
Sbjct: 290 -PLVVDVNVFPSYGGKVDFDWFVEKVALCYTEVA 322
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-11
Identities = 65/429 (15%), Positives = 136/429 (31%), Gaps = 115/429 (26%)
Query: 9 HKEDEEDEEEKQSGVLQPERL------VVGYALTSKKKKSFLQPKLEIL--ARYILTHTN 60
E + + + Q +RL Y ++ + L+ L L A+ +L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 61 KGI--SFVAID--QNRPLSDQGPFDV-------------VLHKLSGMEWCKIIEDYRQ-- 101
G ++VA+D + + + F + VL L + +I ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRS 217
Query: 102 ---KHPEVTILDPPDAIKHLHNRQS------MLQDVADLNLSDC-NGKVRVPRQMVITKD 151
+ ++ I ++ L + +L +V + + N ++ ++ T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRF 274
Query: 152 SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGI 211
+ D + A + + + L L Y +L P +L
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLT------TN 326
Query: 212 LFKIYIIGETIKV-VRRFS-LPNVSKRELAKVVSVF---------R--------FP---R 249
++ II E+I+ + + +V+ +L ++ R FP
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 250 VSSAAAS---ADDADLDPG--IAELPPRPLLER-----------LARELR---------H 284
+ + S D D + +L L+E+ + EL+ H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 285 RLGLRLFNIDMIREHGMRDVFYVIDINYF---PGY--------GKMPDYEHIFTD--FLL 331
R + +NI + D+ YF G+ +M + +F D FL
Sbjct: 447 RSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL- 503
Query: 332 SLEQSKCRK 340
+ K R
Sbjct: 504 ---EQKIRH 509
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 40/207 (19%)
Query: 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-LK 165
I+ P A + ++ +M + + R T +++ ++ AG ++
Sbjct: 101 VIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR----TYATMASFEEALAAGEVQ 149
Query: 166 LPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVV 225
LP+ KP S + + + L +++QE ++G+ + V
Sbjct: 150 LPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE-----------LLVGQELGV- 197
Query: 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR 285
+ ++ ++ + + + + + R + L +
Sbjct: 198 --DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLDG 245
Query: 286 LGLR-LFNIDMIREHGMRDVFYVIDIN 311
GL + D+ G Y+ +IN
Sbjct: 246 SGLVGPLDFDLFDVAG---TLYLSEIN 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| 2q7d_A | 346 | Inositol-tetrakisphosphate 1-kinase; inositol kina | 100.0 | |
| 1z2n_X | 324 | Inositol 1,3,4-trisphosphate 5/6-kinase; inositol | 100.0 | |
| 3t7a_A | 330 | Inositol pyrophosphate kinase; ATP-grAsp fold, tra | 100.0 | |
| 1i7n_A | 309 | Synapsin II; synapse, phosphorylation, neuropeptid | 99.97 | |
| 2p0a_A | 344 | Synapsin-3, synapsin III; neurotransmitter release | 99.97 | |
| 1pk8_A | 422 | RAT synapsin I; ATP binding, ATP grAsp, calcium (I | 99.96 | |
| 3r5x_A | 307 | D-alanine--D-alanine ligase; alpha-beta structure, | 99.9 | |
| 4eg0_A | 317 | D-alanine--D-alanine ligase; structural genomics, | 99.9 | |
| 1uc8_A | 280 | LYSX, lysine biosynthesis enzyme; alpha-aminoadipa | 99.9 | |
| 3se7_A | 346 | VANA; alpha-beta structure, D-alanine-D-lactate li | 99.89 | |
| 1iow_A | 306 | DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho | 99.87 | |
| 2i87_A | 364 | D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco | 99.85 | |
| 1ehi_A | 377 | LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g | 99.85 | |
| 4fu0_A | 357 | D-alanine--D-alanine ligase 7; vancomycin resistan | 99.84 | |
| 3k3p_A | 383 | D-alanine--D-alanine ligase; D-alanyl-alanine synt | 99.84 | |
| 3tqt_A | 372 | D-alanine--D-alanine ligase; cell envelope; 1.88A | 99.84 | |
| 3ln6_A | 750 | Glutathione biosynthesis bifunctional protein GSH; | 99.83 | |
| 2fb9_A | 322 | D-alanine:D-alanine ligase; 1.90A {Thermus caldoph | 99.83 | |
| 3i12_A | 364 | D-alanine-D-alanine ligase A; D-alanyl-alanine syn | 99.83 | |
| 1e4e_A | 343 | Vancomycin/teicoplanin A-type resistance protein; | 99.83 | |
| 3e5n_A | 386 | D-alanine-D-alanine ligase A; bacterial blight; 2. | 99.83 | |
| 2pvp_A | 367 | D-alanine-D-alanine ligase; 2.40A {Helicobacter py | 99.81 | |
| 3lwb_A | 373 | D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan | 99.8 | |
| 3ln7_A | 757 | Glutathione biosynthesis bifunctional protein GSH; | 99.79 | |
| 1gsa_A | 316 | Glutathione synthetase; ligase; HET: ADP GSH; 2.00 | 99.75 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.69 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.69 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 99.65 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 99.65 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 99.65 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 99.65 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 99.64 | |
| 3aw8_A | 369 | PURK, phosphoribosylaminoimidazole carboxylase, AT | 99.64 | |
| 3df7_A | 305 | Putative ATP-grAsp superfamily protein; putative p | 99.63 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 99.62 | |
| 2z04_A | 365 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.62 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 99.61 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 99.61 | |
| 3eth_A | 355 | Phosphoribosylaminoimidazole carboxylase ATPase su | 99.6 | |
| 2pn1_A | 331 | Carbamoylphosphate synthase large subunit; ZP_0053 | 99.56 | |
| 2r85_A | 334 | PURP protein PF1517; ATP-grAsp superfamily, unknow | 99.54 | |
| 3vmm_A | 474 | Alanine-anticapsin ligase BACD; ATP-grAsp domain, | 99.51 | |
| 2ip4_A | 417 | PURD, phosphoribosylamine--glycine ligase; GAR syn | 99.5 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 99.5 | |
| 2yrx_A | 451 | Phosphoribosylglycinamide synthetase; glycinamide | 99.49 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 99.49 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 99.49 | |
| 2yw2_A | 424 | Phosphoribosylamine--glycine ligase; glycinamide r | 99.48 | |
| 1vkz_A | 412 | Phosphoribosylamine--glycine ligase; TM1250, struc | 99.48 | |
| 2vpq_A | 451 | Acetyl-COA carboxylase; bacteria, ATP-grAsp domain | 99.47 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 99.47 | |
| 1a9x_A | 1073 | Carbamoyl phosphate synthetase (large chain); amid | 99.46 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 99.44 | |
| 1ulz_A | 451 | Pyruvate carboxylase N-terminal domain; biotin car | 99.44 | |
| 2dzd_A | 461 | Pyruvate carboxylase; biotin carboxylase, ligase; | 99.43 | |
| 3jrx_A | 587 | Acetyl-COA carboxylase 2; BC domain, soraphen A, a | 99.42 | |
| 2qk4_A | 452 | Trifunctional purine biosynthetic protein adenosi; | 99.41 | |
| 3glk_A | 540 | Acetyl-COA carboxylase 2; ATP binding, alternative | 99.41 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 99.41 | |
| 1w96_A | 554 | ACC, acetyl-coenzyme A carboxylase; ligase, obesit | 99.34 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 99.33 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 99.33 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 99.31 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 99.29 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.23 | |
| 2pbz_A | 320 | Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt | 98.91 | |
| 2r7k_A | 361 | 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib | 98.83 | |
| 2cqy_A | 108 | Propionyl-COA carboxylase alpha chain, mitochondri | 98.81 | |
| 3tig_A | 380 | TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si | 98.39 | |
| 1wr2_A | 238 | Hypothetical protein PH1789; structural genomics, | 98.25 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 97.43 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 97.35 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 97.05 | |
| 2io8_A | 619 | Bifunctional glutathionylspermidine synthetase/ami | 96.6 | |
| 3n6x_A | 474 | Putative glutathionylspermidine synthase; domain o | 91.63 | |
| 2vob_A | 652 | Trypanothione synthetase; ligase; 2.3A {Leishmania | 89.33 | |
| 3mwd_A | 425 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 88.15 |
| >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-60 Score=461.54 Aligned_cols=304 Identities=31% Similarity=0.538 Sum_probs=255.9
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccc------------hhhHH
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSG------------MEWCK 94 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~------------~~~~~ 94 (346)
++++|||||++||.++|+++.|.+.++ ++|++++.||+++++..|++||++|||+++ ..+.+
T Consensus 17 ~~~~vG~~l~~kk~~~~~~~~l~~al~------~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 17 KGKRVGYWLSEKKIKKLNFQAFAELCR------KRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp TTCEEEEECCHHHHHHHTHHHHHHHHH------TTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred CceEEEEEECcccchhhhHHHHHHHHH------hCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 578999999999999999999999999 999999999999999999999999999987 36778
Q ss_pred HHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCChhhHHHhhCCCCcEEEecC
Q 019076 95 IIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 95 ~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~-~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+++|...|+|++||||+++|++|.||+.|++.|+++......++|++|+|+++.+. ..++.+.+...+++||+|+||+
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~ 170 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTR 170 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECS
T ss_pred HHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 899998889999999999999999999999999998543334469999999999643 2445455555789999999999
Q ss_pred cCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccc--cc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VS 251 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~--vs 251 (346)
.++||+ +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+|+|+|..+. +..++|+|.. ++
T Consensus 171 ~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~ 247 (346)
T 2q7d_A 171 VAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVS 247 (346)
T ss_dssp BCSSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTS
T ss_pred CCCcce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeec
Confidence 999996 999999999999999999999999999999999999999999999999999886543 2346677754 67
Q ss_pred ccccccCCCCCCC--CCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCcccHHHHHHH
Q 019076 252 SAAASADDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDF 329 (346)
Q Consensus 252 ~~~~~~~~~~~~~--~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~~~~l~~~ 329 (346)
+++.++.....++ ...++++.++++++|.+++++||++++|||+|++.++| +|||+|||+||||+|+++++..++++
T Consensus 248 ~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~ 326 (346)
T 2q7d_A 248 KPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNH 326 (346)
T ss_dssp STTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHH
T ss_pred cCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHH
Confidence 6664431111111 12345667889999999999999999999999986445 69999999999999999999999999
Q ss_pred HHHHHHhhccc
Q 019076 330 LLSLEQSKCRK 340 (346)
Q Consensus 330 l~~~i~~~~~~ 340 (346)
+.+.++++...
T Consensus 327 l~~~~~~~~~~ 337 (346)
T 2q7d_A 327 IATVLQGQSTA 337 (346)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHhhccCCC
Confidence 99999876653
|
| >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=286.39 Aligned_cols=292 Identities=20% Similarity=0.349 Sum_probs=216.9
Q ss_pred CCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEE--EEecCCCCCCCCC-CccEEEEcccch--hhHHHHHH
Q 019076 24 LQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIED 98 (346)
Q Consensus 24 ~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~--v~id~~~~l~~q~-~fDvilhK~t~~--~~~~~l~~ 98 (346)
...+..+||++..+++. + + .+...++++|+++ +.+|++.++..++ ++|+++++.++. .+.+.++.
T Consensus 7 ~~~~~m~i~il~~~~~~-s-----~----~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 7 TTKQTVSLFIWLPESKQ-K-----T----LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ---CEEEEEEECCHHHH-H-----H----HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred ccCCcEEEEEEEchhhh-h-----h----hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHH
Confidence 33456789999977654 2 2 5566677999999 9999977777666 899999999774 45667777
Q ss_pred HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCC
Q 019076 99 YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 178 (346)
Q Consensus 99 y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS 178 (346)
+...+++++++|+++++..+.||..+.+.|++ +||++|+++++.+ .+++.+.+...+++||+|+||..+.||
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~-------~gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~ 148 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGT 148 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHH-------TTCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSS
T ss_pred HHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCC
Confidence 77777899999999999999999999999997 5899999998853 223333333345779999999986666
Q ss_pred CCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecc----------
Q 019076 179 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFP---------- 248 (346)
Q Consensus 179 ~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~---------- 248 (346)
..+|++.++.+.++|..+..++++||||++.|++++|+|+|+++..+.|++++++..+...+ ...|++.
T Consensus 149 ~~s~gv~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~ 227 (324)
T 1z2n_X 149 FNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEG 227 (324)
T ss_dssp SGGGEEEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTT
T ss_pred ccceeeEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccc
Confidence 66799999999999999889999999999889999999999999888888887764322111 1122221
Q ss_pred cccccc-------cc-cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 249 RVSSAA-------AS-ADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 249 ~vs~~~-------~~-~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+++.. .. +.... .+......+.+.++++|.++.++||+.++|||++++.++| ++||+|||.+|||++++
T Consensus 228 ~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~ 305 (324)
T 1z2n_X 228 VIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKV 305 (324)
T ss_dssp SSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCB
T ss_pred cccccccccccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCC
Confidence 111100 00 00000 0111111222579999999999999999999999874344 68999999999999999
Q ss_pred ccHHHHHHHHHHHHHhh
Q 019076 321 DYEHIFTDFLLSLEQSK 337 (346)
Q Consensus 321 ~~~~~l~~~l~~~i~~~ 337 (346)
++. .+.+++.+.+.++
T Consensus 306 ~~~-~i~~~l~~~~~~~ 321 (324)
T 1z2n_X 306 DFD-WFVEKVALCYTEV 321 (324)
T ss_dssp CHH-HHHHHHHHHHHC-
T ss_pred CHH-HHHHHHHHHHHHh
Confidence 987 8888888887654
|
| >3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=271.05 Aligned_cols=276 Identities=20% Similarity=0.247 Sum_probs=198.9
Q ss_pred CCCCCcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEe----cCCCCCCCCCCccEEEEcccchhhHHHHHH
Q 019076 23 VLQPERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAI----DQNRPLSDQGPFDVVLHKLSGMEWCKIIED 98 (346)
Q Consensus 23 ~~~~~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~i----d~~~~l~~q~~fDvilhK~t~~~~~~~l~~ 98 (346)
+++.+.++||.|.+.||.+|- |.-.-|.|.+. ..-++++.- -++.|.++++-+|++|...++..-.+...+
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~--pm~~il~rl~~---~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~ 76 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSK--PMKEILERISL---FKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVA 76 (330)
T ss_dssp ----CCEEEEEESCHHHHTSH--HHHHHHHHHTT---STTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHH
T ss_pred CCCCCceEEEEEecccccccH--HHHHHHHHhcc---cCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHH
Confidence 345678999999999997663 33333444221 223444432 236788899999999999998766777888
Q ss_pred HHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--------hhhHH--HhhCCCCcE
Q 019076 99 YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS--------IPDQV--FEAGLKLPL 168 (346)
Q Consensus 99 y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~--------~~~~l--~~~~l~fPv 168 (346)
|.+. -+.++||++.++..++||..++++|++ ++||||+++++.++... ..+.+ ....+++|+
T Consensus 77 y~~l-r~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPf 148 (330)
T 3t7a_A 77 YAKL-RNPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPF 148 (330)
T ss_dssp HHHH-HCCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSE
T ss_pred HHHH-hCCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCe
Confidence 8865 346999999999999999999999997 69999999999754320 00111 124578999
Q ss_pred EEecCcCCCCCCceeeEEEeChhh---hh-------------------ccCCCeEEEecccCCCeEEEEEEECCEEE-EE
Q 019076 169 VAKPLVVDGSAKSHELFLAYDRFS---LS-------------------ELEPPMLLQEFVNHGGILFKIYIIGETIK-VV 225 (346)
Q Consensus 169 VvKP~~a~GS~~sh~m~lv~~~~~---L~-------------------~l~~p~v~QEfI~h~G~~~KV~VvG~~v~-~~ 225 (346)
|+||+. || .|+++|.+.... .. .-+.++++||||+++|+|+||||||+++. ++
T Consensus 149 VeKPv~--Gs--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am 224 (330)
T 3t7a_A 149 VEKPVS--AE--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAE 224 (330)
T ss_dssp EEEESB--TT--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEE
T ss_pred eEcccc--cc--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEE
Confidence 999998 54 566666665432 11 11457999999999999999999999975 57
Q ss_pred EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeE
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVF 305 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~ 305 (346)
.|+| |.. .++|++| .. . ++...+ ....++.+++|.++++++|++++|||++++++ ++
T Consensus 225 ~R~s-p~~-~G~~r~N--------~~-g-----G~~~~~----v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~ 281 (330)
T 3t7a_A 225 ARKS-PAL-DGKVERD--------SE-G-----KEVRYP----VILNAREKLIAWKVCLAFKQTVCGFDLLRANG---QS 281 (330)
T ss_dssp EEEC-TTS-SCBCCBC--------TT-S-----CBCCEE----CCCCHHHHHHHHHHHHHTTBSEEEEEEEEETT---EE
T ss_pred EEeC-CCC-CCcEEEc--------CC-C-----Cceeee----ecCCHHHHHHHHHHHHHhCCceEEEEEEEECC---cc
Confidence 7776 421 1345543 11 1 111111 22346689999999999999999999999753 68
Q ss_pred EEEeccCCCCCCCCcccHHHHHHHHHHHHHhhc
Q 019076 306 YVIDINYFPGYGKMPDYEHIFTDFLLSLEQSKC 338 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~~~ 338 (346)
||+|||.||-.++..+|+..+...|.+.+.++.
T Consensus 282 ~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~ 314 (330)
T 3t7a_A 282 YVCDVNGFSFVKNSMKYYDDCAKILGNIVMREL 314 (330)
T ss_dssp EEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888887766653
|
| >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=249.10 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=179.5
Q ss_pred cccccCCcEEEEecCCCCCC-----CCC-------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHHH
Q 019076 56 LTHTNKGISFVAIDQNRPLS-----DQG-------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKH 117 (346)
Q Consensus 56 ~~~~~~Gi~~v~id~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~~ 117 (346)
+.++..++++..++...++. ..| .+|++|.|..+.. ++. +.++++. .|+++||++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~-vl~~le~-~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRH-LVIGMQY-AGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHH-HHHHHHH-TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHH-HHHHHHH-CCccccCCHHHHHH
Confidence 55667788888877755322 122 5899999997632 343 3444443 68999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhh
Q 019076 118 LHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 193 (346)
Q Consensus 118 l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L 193 (346)
|.|| ..++++|+++++ +++|.|++.... + ..+. ...++||+|+||+. || ++.+|.++.+++++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~---~~~~--~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~ 177 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-N---HREM--LTLPTFPVVVKIGH--AH-SGMGKVKVENHYDF 177 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-S---GGGG--SSCCCSSEEEEESS--CS-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-C---hhhh--hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 567788887532 255854444332 2 1222 23479999999998 76 89999999999887
Q ss_pred hcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 194 SEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 194 ~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ ++..
T Consensus 178 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN~~---------------~~~~---- 233 (309)
T 1i7n_A 178 QDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKTNTG---------------SAML---- 233 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSCSCC---------------CSSE----
T ss_pred HHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCeecCC---------------ccee----
Confidence 653 56789999999 79999999999999999999743 35654411 1111
Q ss_pred CCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCcc-cHHHHHHHHHHHHHhhcc
Q 019076 267 AELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPD-YEHIFTDFLLSLEQSKCR 339 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~~ 339 (346)
..++++++.+++|.++++++ |++++|||++.+.+ | ++||+|||. +||++|.+. ....+++++.+.+++.+.
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-G-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 12345677899999999999 89999999998753 3 589999999 999998864 456788888888876653
|
| >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=246.83 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=176.1
Q ss_pred ccccCCcEEEEecCCCCCC-----CCC--------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHHH
Q 019076 57 THTNKGISFVAIDQNRPLS-----DQG--------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKH 117 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~-----~q~--------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~~ 117 (346)
.++..++++..++...+.. ..| .+|++|.|..+.. ++. +.++++. .|+++||++++|.+
T Consensus 50 qa~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~-vl~~le~-~GvpviN~~~sI~~ 127 (344)
T 2p0a_A 50 QAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRS-LVIGLQY-GGLPAVNSLYSVYN 127 (344)
T ss_dssp EECGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHH-HHHHHHH-TTCCEESCHHHHHH
T ss_pred hhhhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHH-HHHHHHH-CCceecCCHHHHHh
Confidence 3445568888877755322 112 6899999997632 443 4444443 68999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhh
Q 019076 118 LHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 193 (346)
Q Consensus 118 l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L 193 (346)
|.|| ..++++|.++++ +++|.|++.... +...+ ...++||+|+||+. || ++.+|.++.+++++
T Consensus 128 ~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~ 194 (344)
T 2p0a_A 128 FCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDF 194 (344)
T ss_dssp TTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHH
T ss_pred hCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 677888887542 355854444342 22211 23579999999998 76 89999999999888
Q ss_pred hcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCC
Q 019076 194 SEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 266 (346)
Q Consensus 194 ~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~ 266 (346)
.++ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ ++..
T Consensus 195 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrtN~~---------------~~~~---- 250 (344)
T 2p0a_A 195 QDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKANTG---------------SAML---- 250 (344)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------SEEE----
T ss_pred HHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCeecCC---------------ceEE----
Confidence 742 56788999999 79999999999999999998743 24554421 1111
Q ss_pred CCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCccc-HHHHHHHHHHHHHhhc
Q 019076 267 AELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPDY-EHIFTDFLLSLEQSKC 338 (346)
Q Consensus 267 ~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~~-~~~l~~~l~~~i~~~~ 338 (346)
..++++++.+++|.++++++ |++++|||++++.+ | ++||+|||. .|++++.+.. ...+.+++.+.+.++.
T Consensus 251 e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~ 324 (344)
T 2p0a_A 251 EQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-G-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLP 324 (344)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC
T ss_pred EeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhc
Confidence 12344677899999999999 89999999998753 3 589999999 9999987743 4567777777776654
|
| >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=247.11 Aligned_cols=244 Identities=11% Similarity=0.133 Sum_probs=178.7
Q ss_pred hcccccCCcEEEEecCCCCCC-----CCC-------CccEEEEcccchh------hHHHHHHHHHhCCCeeeeChHHHHH
Q 019076 55 ILTHTNKGISFVAIDQNRPLS-----DQG-------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIK 116 (346)
Q Consensus 55 ~~~~~~~Gi~~v~id~~~~l~-----~q~-------~fDvilhK~t~~~------~~~~l~~y~~~~p~v~VIDp~~ai~ 116 (346)
++.++..+|++..++....+. ..| .+|++|.|..+.. |+. +.++++. .|++|||++++|.
T Consensus 144 veqa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~-vlr~lE~-~GvpviNs~~sI~ 221 (422)
T 1pk8_A 144 VEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRS-LVIGLQY-AGIPSVNSLHSVY 221 (422)
T ss_dssp EEEECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHH-HHHHHHH-TTCCEESCHHHHH
T ss_pred HHHHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHH-HHHHHHH-CCccccCCHHHHH
Confidence 456777888888877655322 112 5899999997633 443 4444444 6899999999999
Q ss_pred HhcCH----HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh
Q 019076 117 HLHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192 (346)
Q Consensus 117 ~l~dR----~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~ 192 (346)
+|.|| ..++++|.++++ +++|.|.+.... +. .+. ...++||+|+||+. || ++.+|.++.++++
T Consensus 222 ~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~~--i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~ 288 (422)
T 1pk8_A 222 NFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KEM--LSSTTYPVVVKMGH--AH-SGMGKVKVDNQHD 288 (422)
T ss_dssp HTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGC--CCCSSSSEEEEESS--CC-TTTTEEEECSHHH
T ss_pred HhCCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEeCCHHH
Confidence 99999 567788877532 255744444342 21 121 23578999999998 76 8999999999988
Q ss_pred hhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCC
Q 019076 193 LSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 265 (346)
Q Consensus 193 L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~ 265 (346)
+..+ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++|.+ .+..
T Consensus 289 l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~WrtNvg---------------~g~~--- 345 (422)
T 1pk8_A 289 FQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKTNTG---------------SAML--- 345 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------CEEE---
T ss_pred HHHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCceeccC---------------ceee---
Confidence 7753 56789999999 79999999999999999998743 25655421 1111
Q ss_pred CCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCCcc-cHHHHHHHHHHHHHhhcc
Q 019076 266 IAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPD-YEHIFTDFLLSLEQSKCR 339 (346)
Q Consensus 266 ~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~--fPg~~gv~~-~~~~l~~~l~~~i~~~~~ 339 (346)
..++++++.+++|.++++++ |++++|||+|++.+ | ++||+|||. .||+++.+. ....+++++.+.++++..
T Consensus 346 -e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~~ 420 (422)
T 1pk8_A 346 -EQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-G-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALP 420 (422)
T ss_dssp -EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC--
T ss_pred -eeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhcc
Confidence 12344677899999999999 89999999998753 3 689999999 999998774 356788888888876653
|
| >3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=192.88 Aligned_cols=235 Identities=14% Similarity=0.172 Sum_probs=160.6
Q ss_pred HhhhcccccCCcEEEEecCCCC---CCCCCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHH
Q 019076 52 ARYILTHTNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQ 126 (346)
Q Consensus 52 ~r~~~~~~~~Gi~~v~id~~~~---l~~q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~ 126 (346)
.......++.|++++.+|.+.. +.....+|+++....+.... ..++.+.+. .|++++.| ++++..+.||..+.+
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~~ 103 (307)
T 3r5x_A 25 NEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISKK 103 (307)
T ss_dssp HHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHH
Confidence 3333445589999999999853 33345899999988663211 234445443 47888865 999999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCC
Q 019076 127 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPP 199 (346)
Q Consensus 127 ~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p 199 (346)
.|.+ .+|++|++.++.. .+..... ....++||+|+||..++ .|+++.++.+.++|... ..+
T Consensus 104 ~l~~-------~Gip~p~~~~~~~-~~~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~ 171 (307)
T 3r5x_A 104 ILRY-------EGIETPDWIELTK-MEDLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDSE 171 (307)
T ss_dssp HHHH-------TTCCCCCEEEEES-SSCCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSE
T ss_pred HHHH-------CCCCCCCEEEEeC-hhhhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCC
Confidence 9997 5899999999864 2322221 22457899999998733 57899999999887653 578
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeeccccc-ccccccCCCCCCCCCCCCCChHHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVS-SAAASADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs-~~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
+++||||+ |+++.|.|+|+++..+ .+... .++++|.... ..+....+..+++. ..+.+++
T Consensus 172 ~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~~-----~~~~i~~ 233 (307)
T 3r5x_A 172 VVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPAE-----LKERVNK 233 (307)
T ss_dssp EEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCHH-----HHHHHHH
T ss_pred EEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCHH-----HHHHHHH
Confidence 99999996 8999999999986322 21110 1112222111 11111111122110 1346799
Q ss_pred HHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 278 LARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 278 lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+|.++.++||+. ++++|+++++ | ++||+|||..||+.+..
T Consensus 234 ~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s 274 (307)
T 3r5x_A 234 ASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQAS 274 (307)
T ss_dssp HHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccC
Confidence 999999999998 9999999983 3 79999999999998653
|
| >4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=192.10 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=157.3
Q ss_pred cccccCCcEEEEecCCCCCCC---CCCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHh
Q 019076 56 LTHTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 130 (346)
Q Consensus 56 ~~~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~ 130 (346)
...++.|++++.||.+..... ...+|+++.-+.+... ...++...+. -|++++ ++++++..++||..+.++|++
T Consensus 39 ~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~ 117 (317)
T 4eg0_A 39 QGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YGIRYTGSGVLGSALGLDKFRTKLVWQQ 117 (317)
T ss_dssp HHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HTCEESSCCHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH
Confidence 334489999999997654222 3579999988765321 1235566554 478888 677999999999999999997
Q ss_pred ccccCCCCccccCcEEEEccCCCChhhHH--HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeE
Q 019076 131 LNLSDCNGKVRVPRQMVITKDSLSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPML 201 (346)
Q Consensus 131 l~~~~~~~~I~~P~~~~i~~~~~~~~~~l--~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v 201 (346)
+|||+|++.++.. .++..+.. ....++||+|+||..++ .|.++.++.+.++|.+. ..+++
T Consensus 118 -------~Gip~p~~~~~~~-~~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~l 186 (317)
T 4eg0_A 118 -------TGVPTPPFETVMR-GDDYAARATDIVAKLGLPLFVKPASEG---SSVAVLKVKTADALPAALSEAATHDKIVI 186 (317)
T ss_dssp -------TTCCCCCEEEEET-TSCHHHHHHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSEEE
T ss_pred -------CCcCCCCEEEEEC-chhHHHHHHHHHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEE
Confidence 5899999999864 33332221 01458999999998743 47899999999987642 46899
Q ss_pred EEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHH
Q 019076 202 LQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLA 279 (346)
Q Consensus 202 ~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA 279 (346)
+||||++ |+++.|.|+|+++..+.+.... .++++|......+.. ..+..+++. ..+.++++|
T Consensus 187 vEe~i~~-G~E~~v~vl~~~~~~~~~i~~~----------~~~~~~~~k~~~g~~~~~~P~~l~~~-----~~~~l~~~a 250 (317)
T 4eg0_A 187 VEKSIEG-GGEYTACIAGDLDLPLIKIVPA----------GEFYDYHAKYVANDTQYLIPCGLPAE-----QETELKRIA 250 (317)
T ss_dssp EEECCCS-SEEEEEEEETTCCCCCEEEEC-------------------------CEEESSCSSCHH-----HHHHHHHHH
T ss_pred EEcCCCC-CcEEEEEEECCcccceEEEeeC----------CceechhhcccCCCeeEEcCCCCCHH-----HHHHHHHHH
Confidence 9999975 9999999999974322111111 123333332211100 011112110 135689999
Q ss_pred HHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 280 RELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 280 ~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
.++.++||+. ++++|++++. +| ++||+|||..||+....-+
T Consensus 251 ~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 251 RRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp HHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHH
T ss_pred HHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHH
Confidence 9999999996 8899999975 34 6999999999999876544
|
| >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=188.60 Aligned_cols=227 Identities=14% Similarity=0.170 Sum_probs=156.5
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCC-------CCCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-------q~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
.+.+.++ ++|++++.+|.+..... ...+|+++++.........++++.+. -+++++++++++..+.
T Consensus 15 ~~~~a~~------~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~ 87 (280)
T 1uc8_A 15 MLFERAE------ALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACG 87 (280)
T ss_dssp HHHHHHH------HHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHH
T ss_pred HHHHHHH------HcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhC
Confidence 3455555 89999999998653311 24689666665432222345555554 4788899999999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++||+|+||..++ +|+++.++.+.+++.+.
T Consensus 88 dK~~~~~~l~~-------~gi~~p~~~~~~~-~~~~~~~--~~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~ 154 (280)
T 1uc8_A 88 DKWATSVALAK-------AGLPQPKTALATD-REEALRL--MEAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXX 154 (280)
T ss_dssp BHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHHH--HHHHCSSEEEECSBCC---BCSHHHHHHHHHC-------
T ss_pred CHHHHHHHHHH-------cCcCCCCeEeeCC-HHHHHHH--HHHhCCCEEEEECCCC---Ccccceecccccccchhhhh
Confidence 99999999997 5899999998852 2222222 2347899999999743 47888888888776541
Q ss_pred --------CCCeEEEecccCCCeEEEEEEECCEEEEE-EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCC
Q 019076 197 --------EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 267 (346)
Q Consensus 197 --------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~ 267 (346)
..++++||||+..+++++++++|+++... .|.+ . +|..+ ... ++...|.
T Consensus 155 ~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~-~-----~~~~~--------~~~------g~~~~p~-- 212 (280)
T 1uc8_A 155 KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS-A-----HWITN--------TAR------GGQAENC-- 212 (280)
T ss_dssp -----CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------------CEEC--
T ss_pred HhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-C-----Ccccc--------ccC------CccccCC--
Confidence 46899999998768999999999997654 3332 2 22211 000 1111121
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 268 ELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 268 ~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
++ .+.++++|.++.++||+.++|+|++++.+ ++||+|||..||+..+.
T Consensus 213 ~l--~~~~~~~~~~~~~~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 213 PL--TEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp CC--CHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred CC--CHHHHHHHHHHHHHhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 11 34689999999999999999999999753 49999999999988753
|
| >3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=192.90 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=142.6
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|++++-+.+.... ..++.+.+. .|++++.| +.++..++||..+.+.|++ .||++|++.++......
T Consensus 90 ~~D~v~~~lhG~~gedg~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~-- 159 (346)
T 3se7_A 90 RLDLVLPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARS-------AGIATPNFWTVTADEKI-- 159 (346)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEEETTSCC--
T ss_pred CCCEEEEccCCCCCCChHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEcCcHHH--
Confidence 579999888664321 245666654 56887765 8999999999999999997 58999999998643311
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCE----EEEE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET----IKVV 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~ 225 (346)
....++||+|+||..++ .|.++.++.+.++|.. .+.++++||||+ |+++.|.|+++. +..+
T Consensus 160 ---~~~~lg~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (346)
T 3se7_A 160 ---PTDQLTYPVFVKPARSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEV 231 (346)
T ss_dssp ---CTTTCCSSEEEEESSCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCC
T ss_pred ---HHHhcCCCEEEEeCCCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEee
Confidence 23468999999998644 3788999999988765 257899999996 999999999872 2222
Q ss_pred EeecCCCcccchhhcccceeec----ccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRF----PRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIRE 298 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~----~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~ 298 (346)
.+... ..++|+| ......+.. ..+..+++. ..+.++++|.++.++||+ .++++|++++
T Consensus 232 ~e~~~----------~~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 296 (346)
T 3se7_A 232 DQITL----------SHGFFKIHQESTPESGSDNSAVTVPADISTT-----SRSLVQDTAKAVYRALGCRGLSRVDLFLT 296 (346)
T ss_dssp EEECC----------C--------------CGGGSCEESSCCCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEEec----------CCCCcCcccchhccccCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 22221 1234555 332221110 011112110 134689999999999999 6888999998
Q ss_pred cCcCCeEEEEeccCCCCCCCCc
Q 019076 299 HGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 299 ~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
.+ | ++|++|||..||+.+..
T Consensus 297 ~~-g-~~~vlEiN~rPG~t~~s 316 (346)
T 3se7_A 297 ED-G-KVVLNEVNTFPGMTSYS 316 (346)
T ss_dssp TT-S-CEEEEEEESSCCCSTTC
T ss_pred CC-C-CEEEEEEeCCCCCCccc
Confidence 53 4 69999999999998654
|
| >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=180.92 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=155.7
Q ss_pred cccCCcEEEEecCCCCCCC---CCCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhcc
Q 019076 58 HTNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLN 132 (346)
Q Consensus 58 ~~~~Gi~~v~id~~~~l~~---q~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~ 132 (346)
+.++|++++.+|.+..... ...+|+++.+...... ...++...+. -+++++ ++++++..+.||..+.+.|++
T Consensus 30 l~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~-- 106 (306)
T 1iow_A 30 LREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGLPYTGSGVMASALSMDKLRSKLLWQG-- 106 (306)
T ss_dssp HHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH--
Confidence 3389999999999753322 2478999988743110 0123344433 367776 889999999999999999997
Q ss_pred ccCCCCccccCcEEEEccCCCChhhH------HHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCC
Q 019076 133 LSDCNGKVRVPRQMVITKDSLSIPDQ------VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPP 199 (346)
Q Consensus 133 ~~~~~~~I~~P~~~~i~~~~~~~~~~------l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p 199 (346)
++|++|++..+... +..+. -....++||+|+||..+. .|.++.++.+.++|... ..+
T Consensus 107 -----~gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~~~~~~~~ 176 (306)
T 1iow_A 107 -----AGLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRLAFQHDEE 176 (306)
T ss_dssp -----TTCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHHHTTTCSE
T ss_pred -----CCCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhCCC
Confidence 58999999988532 22110 012468999999998743 57899999999887642 578
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeeccccc-cccc-ccCCCCCCCCCCCCCChHHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS-SAAA-SADDADLDPGIAELPPRPLLER 277 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs-~~~~-~~~~~~~~~~~~~~p~~~~~~~ 277 (346)
+++||||+ |++++|.++|+++..+.+....+ +.++|.... .++. ...+..+++ ...+.+.+
T Consensus 177 ~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~~p~~l~~-----~~~~~i~~ 239 (306)
T 1iow_A 177 VLIEKWLS--GPEFTVAILGEEILPSIRIQPSG----------TFYDYEAKFLSDETQYFCPAGLEA-----SQEANLQA 239 (306)
T ss_dssp EEEEECCC--CCEEEEEEETTEECCCEEEECSS----------SSSCHHHHHTCSCCEEESSCCCCH-----HHHHHHHH
T ss_pred EEEEeCcC--CEEEEEEEECCCccceEEEEeCC----------CeEchhheecCCCeeEEcCCCCCH-----HHHHHHHH
Confidence 99999996 89999999999864333222111 112221100 0000 001111111 01346889
Q ss_pred HHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 278 LARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 278 lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+|.++.++||+. ++++|++++. +| ++|++|||..||+.+.
T Consensus 240 ~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 240 LVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred HHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 999999999996 9999999974 34 6999999999998764
|
| >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=182.29 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=138.6
Q ss_pred CCccEEEEcccch--hhHHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-
Q 019076 78 GPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 153 (346)
Q Consensus 78 ~~fDvilhK~t~~--~~~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~- 153 (346)
..+|+|+..+.+. +. ..++...+. .|++++.| ++++..+.||..+.++|++ .||++|++..+.....
T Consensus 86 ~~~D~v~~~~~g~~~ed-~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~ 156 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED-GTIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEH-------RGLPQLPYISFLRSEYE 156 (364)
T ss_dssp SBCSEEEEECCCSSSCT-THHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEEEEHHHHH
T ss_pred cCCCEEEEeCCCCCCcC-HHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhhc
Confidence 3589999887432 11 234555543 46888765 8999999999999999997 4899999998853210
Q ss_pred -----ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 154 -----SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 154 -----~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
.+.+ ....++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ |+++.|.|+|+.
T Consensus 157 ~~~~~~~~~--~~~~~g~PvvvKP~~g~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 229 (364)
T 2i87_A 157 KYEHNILKL--VNDKLNYPVFVKPANLG---SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHH--HHHHCCSSEEEEESSCS---SCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESS
T ss_pred ccchhHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCC
Confidence 1111 12458999999998744 36799999999887642 57899999996 899999999875
Q ss_pred ---EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCC-cEeEEEE
Q 019076 222 ---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDM 295 (346)
Q Consensus 222 ---v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl-~lfGvDv 295 (346)
+....+. ....++|+|......+.. ....|. .++ ..+.++++|.++.++||+ .+++||+
T Consensus 230 ~~~~~~~~e~----------~~~~~~~~~~~k~~~g~~---~~~~pa--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 294 (364)
T 2i87_A 230 YPEATWPGEV----------VKDVAFYDYKSKYKDGKV---QLQIPA--DLDEDVQLTLRNMALEAFKATDCSGLVRADF 294 (364)
T ss_dssp SCEECCCEEE----------CCSCCC-----------C---CEESSC--SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CcEEeeeEEE----------ecCCCcCCHHHcccCCCe---eEEeCC--CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2111111 111133444332211110 001111 111 134689999999999999 6889999
Q ss_pred EEecCcCCeEEEEeccCCCCCCCC
Q 019076 296 IREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 296 i~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+++. +| ++||+|||..||+...
T Consensus 295 ~~~~-~g-~~~viEiN~rpg~t~~ 316 (364)
T 2i87_A 295 FVTE-DN-QIYINETNAMPGFTAF 316 (364)
T ss_dssp EECT-TC-CEEEEEEESSCCCSTT
T ss_pred EEec-CC-CEEEEEEeCCCCCCch
Confidence 9974 34 6999999999999754
|
| >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=180.16 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=146.3
Q ss_pred CCccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC--
Q 019076 78 GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-- 153 (346)
Q Consensus 78 ~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~-- 153 (346)
..+|+||..+.+.... ..++...+. -|++++ ++++++..++||..+.++|++ +|||+|++.++.+..+
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~ 163 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTV-------NGIRNTKYIVVDPESANN 163 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHT-------TTCCCCCEEEECTTGGGG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCEEEEeccccch
Confidence 3689999888543211 235555554 578887 999999999999999999996 6899999999853221
Q ss_pred -ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCC-eEEEEEEECCE---
Q 019076 154 -SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGG-ILFKIYIIGET--- 221 (346)
Q Consensus 154 -~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G-~~~KV~VvG~~--- 221 (346)
...+ ....++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ | +++.|.|+|+.
T Consensus 164 ~~~~~--~~~~~g~PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~ 236 (377)
T 1ehi_A 164 WSWDK--IVAELGNIVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPL 236 (377)
T ss_dssp CCHHH--HHHHHCSCEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCE
T ss_pred HHHHH--HHHhcCCCEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcE
Confidence 1211 12357899999998743 46889999999887642 56899999995 7 99999999883
Q ss_pred EEEEEeecCCCcccchhhcccceeecccccccc-c--ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019076 222 IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA-A--SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 297 (346)
Q Consensus 222 v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~ 297 (346)
+....+.-....+ ...++|+|......+ . ...++.+++. ..+.++++|.++.++||+. +++||+++
T Consensus 237 ~~~~~ei~~~~~~-----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~ 306 (377)
T 1ehi_A 237 VSEIGAHTVPNQG-----SGDGWYDYNNKFVDNSAVHFQIPAQLSPE-----VTKEVKQMALDAYKVLNLRGEARMDFLL 306 (377)
T ss_dssp EEEEEEEECTTSS-----SSSCCCCHHHHTTCCTTCEEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEeeEEEEecCCC-----CcCceeCHHhcccCCCCeeEEeCCCCCHH-----HHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 4433222111000 012344443322111 0 0112222111 1356899999999999997 88899999
Q ss_pred ecCcCCeEEEEeccCCCCCCCC
Q 019076 298 EHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 298 ~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+. +| ++||+|||..||+...
T Consensus 307 ~~-~g-~~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 307 DE-NN-VPYLGEPNTLPGFTNM 326 (377)
T ss_dssp CT-TC-CEEEEEEESSCCCSTT
T ss_pred eC-CC-CEEEEEEeCCCCCCcc
Confidence 74 34 6999999999998765
|
| >4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=180.21 Aligned_cols=214 Identities=16% Similarity=0.229 Sum_probs=145.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC-h
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-~ 155 (346)
.+|+++.=+.+.... ..++.+.+. -|++.+ -++.++..|.||..+.++|++ +|||+|++..+...... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSL-------AGISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEeecCCChHHH
Confidence 367776655442211 246666665 567776 678999999999999999997 58999999988532211 1
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEee
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRF 228 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~ 228 (346)
.+. ....++||+|+||..+ | .|.+|.+|.+.++|... +.++++|+|| .|+.+-|.|+|+.-..+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~g-g--~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRA-G--SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTC-S--SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHH-HHHhcCCCEEEEECCC-C--CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 111 2356999999999863 3 47899999999998653 5689999999 599999999987632211
Q ss_pred cCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeE
Q 019076 229 SLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVF 305 (346)
Q Consensus 229 Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~ 305 (346)
+- .+.....++++|......+.. ..++.+++. ..+.++++|.++.++||+. +++||++++. +| ++
T Consensus 241 --~v---~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~-----~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~ 308 (357)
T 4fu0_A 241 --RV---DEIELSSGFFDYTEKYTLKSSKIYMPARIDAE-----AEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EI 308 (357)
T ss_dssp --CC---EEEEECHHHHTSCSBCSSCCEEEESSCSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CE
T ss_pred --EE---EEEEcccccccccccccCCCceEecCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CE
Confidence 00 011111234455544332211 122222221 1456899999999999995 7789999974 44 79
Q ss_pred EEEeccCCCCCCCCc
Q 019076 306 YVIDINYFPGYGKMP 320 (346)
Q Consensus 306 ~ViDVN~fPg~~gv~ 320 (346)
||+|||..||+....
T Consensus 309 ~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 309 VFNEVNTIPGFTSHS 323 (357)
T ss_dssp EEEEEESSCCCSTTC
T ss_pred EEEEEeCCCCCCccc
Confidence 999999999998643
|
| >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=180.39 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=160.0
Q ss_pred cEEEEEEe---cccccccccchHHHHHHhhhcccccCCcEEEEecCCCC------------------CCCC---------
Q 019076 28 RLVVGYAL---TSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRP------------------LSDQ--------- 77 (346)
Q Consensus 28 ~~~vGy~l---~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~------------------l~~q--------- 77 (346)
..+|+..+ |....= |+...........+.|+++++||.++. +...
T Consensus 37 ~~~v~vl~GG~S~E~ev-----Sl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDV-----SVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKI 111 (383)
T ss_dssp CEEEEEEEECSSTTHHH-----HHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEE
T ss_pred CCeEEEEeCCCCCcchH-----HHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccc
Confidence 34677766 333332 333334444445688999999998642 0000
Q ss_pred ------CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCc-cccCcEEEE
Q 019076 78 ------GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGK-VRVPRQMVI 148 (346)
Q Consensus 78 ------~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~-I~~P~~~~i 148 (346)
..+|+++.-+.+... -..++.+.+. -|++++ .++.++..++||..+.++|++ .+ ||+|++.++
T Consensus 112 ~~~~~~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~G~Ipvp~~~~~ 183 (383)
T 3k3p_A 112 KPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLES-------ATTIPQVAYVAL 183 (383)
T ss_dssp CGGGGCCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------HCCCCBCCEEEE
T ss_pred cccccccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHh-------CCCcCCCCEEEE
Confidence 157999987765321 1246666655 578776 568999999999999999997 48 999999998
Q ss_pred ccCCCC--hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEEC
Q 019076 149 TKDSLS--IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 149 ~~~~~~--~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
...... .... ....++||+|+||..++ .|.++.++.++++|.+. +.++++||||+ |++|.|.|+|
T Consensus 184 ~~~~~~~~~~~~-~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~ 257 (383)
T 3k3p_A 184 IEGEPLESKLAE-VEEKLIYPVFVKPANMG---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILG 257 (383)
T ss_dssp ETTSCHHHHHHH-HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEE
T ss_pred eCccchhHHHHH-HHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEe
Confidence 643211 1111 23568999999998633 37899999999988642 57899999996 9999999998
Q ss_pred CEEEEEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEE
Q 019076 220 ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMI 296 (346)
Q Consensus 220 ~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi 296 (346)
+.-..+ +.+ .+.....++|+|...+..+.. ..++.+++. ..+.++++|.++.++||+. ++++|++
T Consensus 258 d~~~~~---~~~----~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~ 325 (383)
T 3k3p_A 258 NTDVKT---TLP----GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPV-----IVEKMRDYAATAFRTLGCCGLSRCDFF 325 (383)
T ss_dssp SSSCEE---CCC----EEEC-----------------CEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeeE---Eee----EEEecCCCccchhhcccCCCeeEEecCCCCHH-----HHHHHHHHHHHHHHHcCCceEEEEEEE
Confidence 752110 111 111112345566554432211 112222111 2356899999999999997 7789999
Q ss_pred EecCcCCeEEEEeccCCCCCCCC
Q 019076 297 REHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 297 ~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
++. +| ++||+|||..||+...
T Consensus 326 ~~~-~g-~~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 326 LTE-DG-KVYLNELNTMPGFTQW 346 (383)
T ss_dssp ECT-TC-CEEEEEEESSCCCC--
T ss_pred EEC-CC-CEEEEEeeCCCCCCcc
Confidence 975 34 6999999999998854
|
| >3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=177.06 Aligned_cols=215 Identities=10% Similarity=0.132 Sum_probs=140.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 154 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-- 154 (346)
.+|+++.-+.+.... ..++.+.+. -|++++ .++.++..++||..|.+.|++ +|||+|++.++......
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRA-------GGIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEechhhhhh
Confidence 589999887653211 246777765 578876 467899999999999999997 58999999998643321
Q ss_pred hhhHHHhhCCCCc-EEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 019076 155 IPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVR 226 (346)
Q Consensus 155 ~~~~l~~~~l~fP-vVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~ 226 (346)
..+. ....++|| +|+||..++ .|.+|.++.++++|... +.++++||||+ |+.+.|.|+|+.-.
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHH-HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 1111 23568999 999998633 37899999999987642 57899999996 89999999988610
Q ss_pred eecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcC
Q 019076 227 RFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMR 302 (346)
Q Consensus 227 R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g 302 (346)
+.+ +- .+.....++|+|......+. ...++.+++. ..+.++++|.++.++||+. ++++|++++. +|
T Consensus 241 ~~~-~~---~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg 310 (372)
T 3tqt_A 241 KAS-LP---GEIIPHHDYYSYDAKYLDPNGATTTTSVDLSES-----VTKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN 310 (372)
T ss_dssp EEC-CC---EEEECC---------------CEEESCCCCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC
T ss_pred eEe-ee---EEEecCCCccchhhcccCCCceEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC
Confidence 001 11 11111224556654432221 1112222211 1356899999999999998 7789999975 34
Q ss_pred CeEEEEeccCCCCCCCCcc
Q 019076 303 DVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 303 ~~~~ViDVN~fPg~~gv~~ 321 (346)
++||+|||..||++...-
T Consensus 311 -~~~vlEINt~PG~t~~S~ 328 (372)
T 3tqt_A 311 -KVLVNEINTIPGFTNISM 328 (372)
T ss_dssp -CEEEEEEESSCCCSTTCH
T ss_pred -cEEEEEEECCCCcCccCH
Confidence 699999999999986543
|
| >3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=197.27 Aligned_cols=234 Identities=16% Similarity=0.172 Sum_probs=156.6
Q ss_pred ccccCCcEEEEecCCCCCCCCC---CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccc
Q 019076 57 THTNKGISFVAIDQNRPLSDQG---PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNL 133 (346)
Q Consensus 57 ~~~~~Gi~~v~id~~~~l~~q~---~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~ 133 (346)
.++++|++++.||++.++...+ .+|+++. ..+.-.++..++..+.||..+.++|++
T Consensus 436 aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~~--- 494 (750)
T 3ln6_A 436 DVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILDE--- 494 (750)
T ss_dssp HHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHHH---
T ss_pred HHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHHH---
Confidence 3449999999999987655321 2333321 123556778899999999999999997
Q ss_pred cCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEe---Chhhhhc-------cCCCeEEE
Q 019076 134 SDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE-------LEPPMLLQ 203 (346)
Q Consensus 134 ~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~---~~~~L~~-------l~~p~v~Q 203 (346)
+|||+|++.++.+ .++..+. ....++||+|+||.. |+ .|.||.++. +.+++.+ ...++++|
T Consensus 495 ----~GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~--G~-~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVE 565 (750)
T 3ln6_A 495 ----KHFPTPFGDEFTD-RKEALNY-FSQIQDKPIVVKPKS--TN-FGLGISIFKTSANLASYEKAIDIAFTEDSAILVE 565 (750)
T ss_dssp ----TTCCCCCCCCEET-TTTHHHH-HHHSSSSCEEEEETT--CC-SSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEE
T ss_pred ----CCcCCCCEEEECC-HHHHHHH-HHHhcCCcEEEEeCC--CC-CCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEE
Confidence 6999999998853 3333332 225689999999986 43 478999998 7777653 25789999
Q ss_pred ecccCCCeEEEEEEECCEEEEEEeecCCCcccch------hh--ccc----c-----------------------eeec-
Q 019076 204 EFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE------LA--KVV----S-----------------------VFRF- 247 (346)
Q Consensus 204 EfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~------~~--~~~----g-----------------------~~~~- 247 (346)
|||+ |++++|+|+|++++.+.++-.+.+..+. +. .+. | -++.
T Consensus 566 efI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~ 643 (750)
T 3ln6_A 566 EYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVN 643 (750)
T ss_dssp ECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSS
T ss_pred eccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCcc
Confidence 9996 8999999999999875554434432110 00 000 0 0011
Q ss_pred --------------ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEec------CcCCeEEE
Q 019076 248 --------------PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREH------GMRDVFYV 307 (346)
Q Consensus 248 --------------~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~------~~g~~~~V 307 (346)
.|+|.++ .......+ ..+.++++|.++++++|+.+.|||+++++ ..++.++|
T Consensus 644 ~V~~~Ge~v~L~~~~Nls~Gg------~~~d~td~--i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~~~~i 715 (750)
T 3ln6_A 644 SIPPEGTKIELRRNSNISTGG------DSIDVTNT--MDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKKNATC 715 (750)
T ss_dssp CCCCTTCEEESCSSCCTTTTC------EEEECTTT--SCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTTCCEE
T ss_pred ccCCCCCEEEEeecccccCCC------ceeecccc--CCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCCCeEE
Confidence 2222222 11110001 24568999999999999999999999974 11225899
Q ss_pred EeccCCCCCCCC--------cccHHHHHHHH
Q 019076 308 IDINYFPGYGKM--------PDYEHIFTDFL 330 (346)
Q Consensus 308 iDVN~fPg~~gv--------~~~~~~l~~~l 330 (346)
||||..||+.+. .+....++|+|
T Consensus 716 iEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 716 IELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp EEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred EEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 999999998644 24556666655
|
| >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=171.71 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=144.7
Q ss_pred CCCccEEEEcccchhhH-HHHHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC
Q 019076 77 QGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 154 (346)
Q Consensus 77 q~~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~ 154 (346)
...+|+|+..+.+.... ..++...+. -|++++. ++.++..++||..+.+.|++ +||++|++..+.+..+
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~- 144 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQ-------AGVPVVPWVAVRKGEP- 144 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSC-
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEECchh-
Confidence 34689999988542110 234555543 4688875 49999999999999999997 5899999998864322
Q ss_pred hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCC-eEEEEEEECCE---EE
Q 019076 155 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGG-ILFKIYIIGET---IK 223 (346)
Q Consensus 155 ~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G-~~~KV~VvG~~---v~ 223 (346)
+. . .++||+|+||..++ .|.++.++.++++|.+. +.++++||||+ | +++.|.|+|++ +.
T Consensus 145 --~~--~-~~g~PvvvKP~~g~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 145 --PV--V-PFDPPFFVKPANTG---SSVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp --CC--C-CSCSCEEEEETTCC---TTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred --hh--h-ccCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 11 1 68999999998744 36899999999887652 56899999995 7 99999999985 32
Q ss_pred EEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 300 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~ 300 (346)
...+... ..++|+|......+.. ..++.+++. ..+.++++|.++.++||+ .++++|++++
T Consensus 215 ~~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~-- 277 (322)
T 2fb9_A 215 PVGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDPG-----TQETVQELALKAYKVLGVRGMARVDFFLA-- 277 (322)
T ss_dssp EEEEEEE----------ECCEEETTTEEECCEEEEESSCCCCTT-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEE--
T ss_pred eeEEEee----------CCCccCHHHcccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEE--
Confidence 2211110 0123444332211110 112222211 245789999999999999 8999999997
Q ss_pred cCCeEEEEeccCCCCCCCCc
Q 019076 301 MRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++||+|||..||+....
T Consensus 278 ~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 278 EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp TT-EEEEEEEESSCCCSSSC
T ss_pred CC-cEEEEEEECCCCCCccc
Confidence 34 79999999999998654
|
| >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=171.99 Aligned_cols=210 Identities=12% Similarity=0.186 Sum_probs=144.2
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC---C
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---L 153 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---~ 153 (346)
.+|+++.=+.+.... ..++.+.+. -|++++.| +.++..++||..+.++|++ .||++|++.++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRD-------AGLNIAPFITLTRTNRHAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEEETTTGGGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEEccccchh
Confidence 579998776542211 246667655 57887764 7999999999999999996 589999999986432 1
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE---EE
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET---IK 223 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~---v~ 223 (346)
.+.+ ....++||+|+||..++ .|.++.++.+.++|... +.++++||||+ |+.+.|.|+|+. +.
T Consensus 170 ~~~~--~~~~lg~PvvVKP~~gg---ss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 170 SFAE--VESRLGLPLFVKPANQG---SSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQAS 242 (364)
T ss_dssp CHHH--HHHHHCSSEEEEETTCC---TTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEEE
T ss_pred hHHH--HHHhcCCCEEEEECCCC---CCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceEe
Confidence 2322 23458899999998633 36899999999887642 57899999995 799999999876 12
Q ss_pred EEEeecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEec
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREH 299 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~ 299 (346)
...+.. + ..++|+|......+. ...++.+++. ..+.++++|.++.++||+ .++++|++++.
T Consensus 243 ~~~ei~-~---------~~~~~~~~~ky~~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 243 TCGEIV-L---------NSEFYAYDTKYIDDNGAQVVVPAQIPSE-----VNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEE-C---------CTTCC--TTTTSGGGGCEEESSCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred eeEEEe-c---------CCCccCHHHcccCCCceEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 221111 1 123445544332211 1112222211 134689999999999999 47789999974
Q ss_pred CcCCeEEEEeccCCCCCCCCc
Q 019076 300 GMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 300 ~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++|++|||..||+....
T Consensus 308 -~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-CEEEEEeeCCCCCCCCC
Confidence 34 69999999999998653
|
| >1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=173.29 Aligned_cols=206 Identities=18% Similarity=0.256 Sum_probs=139.9
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+..+.+... ...++...+. .+++++ .++.++..++||..+.+.|++ .+|++|++..+.+.. ...
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~-~~~ 160 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKN-------AGIATPAFWVINKDD-RPV 160 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEECTTC-CCC
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCEEEEechh-hhh
Confidence 46777766543210 1235555543 467876 679999999999999999997 589999999985432 221
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE--EEE--E
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET--IKV--V 225 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~--v~~--~ 225 (346)
...++||+|+||..++ .|.+|.++.+.++|... +.++++||||+ |+++.|.|+|+. +.+ +
T Consensus 161 ----~~~~~~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (343)
T 1e4e_A 161 ----AATFTYPVFVKPARSG---SSFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEV 231 (343)
T ss_dssp ----GGGSCSCEEEEESSCC---TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCC
T ss_pred ----hhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeee
Confidence 1468999999999744 36789999999887642 57899999996 899999999764 211 1
Q ss_pred EeecCCCcccchhhcccceeecccccc----cccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEe
Q 019076 226 RRFSLPNVSKRELAKVVSVFRFPRVSS----AAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIRE 298 (346)
Q Consensus 226 ~R~Slp~~~~~~~~~~~g~~~~~~vs~----~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~ 298 (346)
.+... ..++|+|..... .+.+. ..-|. .++ ..+.++++|.++.++||+. ++++|++++
T Consensus 232 ~ei~~----------~~~~~~~~~k~~~~~~~g~~~---~~~p~--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 232 DQIRL----------QYGIFRIHQEVEPEKGSENAV---ITVPA--DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEEE----------SSSCCCGGGSSSGGGCCSSEE---ECSSC--SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEee----------CCCccCHhhcccccCCCCCee---EEeCC--CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 11110 112344433221 11100 01111 122 1356899999999999994 889999997
Q ss_pred cCcCCeEEEEeccCCCCCCCC
Q 019076 299 HGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 299 ~~~g~~~~ViDVN~fPg~~gv 319 (346)
. +| ++||+|||..||+...
T Consensus 297 ~-~g-~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 297 D-NG-RIVLNEVNTLPGFTSY 315 (343)
T ss_dssp T-TC-CEEEEEEESSCCCSTT
T ss_pred C-CC-CEEEEEeeCCCCCCcc
Confidence 4 34 6999999999999754
|
| >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=177.44 Aligned_cols=210 Identities=13% Similarity=0.198 Sum_probs=140.1
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC---C
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---L 153 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~---~ 153 (346)
.+|+|+.=+.+.... ..++...+. -|++++ .++.++..++||..+.++|++ .|||+|++.++.... .
T Consensus 117 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 188 (386)
T 3e5n_A 117 QIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRD-------ARLAVAPFVCFDRHTAAHA 188 (386)
T ss_dssp CCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEEEHHHHTTC
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEEeCcccchh
Confidence 578888776553221 246666655 567766 578999999999999999997 589999999985321 1
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEE-EE-
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETI-KV- 224 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v-~~- 224 (346)
.+.+ ....++||+|+||..++| |.++.++.++++|... +.++++||||+ |+.+.|.|+|+.. .+
T Consensus 189 ~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 261 (386)
T 3e5n_A 189 DVDT--LIAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNAVPHAS 261 (386)
T ss_dssp CHHH--HHHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSSSCEEE
T ss_pred hHHH--HHHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCCceEE
Confidence 2222 234589999999986443 6889999999987642 56899999996 8999999998862 11
Q ss_pred -EEeecCCCcccchhhcccceeeccccccccc---ccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEec
Q 019076 225 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREH 299 (346)
Q Consensus 225 -~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~ 299 (346)
..+.. + ..++|+|......+. ...++.+++. ..+.++++|.++.++||+. ++++|++++.
T Consensus 262 ~~gei~-~---------~~~~~d~~~ky~~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 326 (386)
T 3e5n_A 262 VCGEVV-V---------HDAFYSYATKYISEHGAEIVIPADIDAQ-----TQQRIQQIAVQAYQALGCAGMARVDVFLCA 326 (386)
T ss_dssp EEEEEC-C--------------------------CEESSCSSCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEECT
T ss_pred EeEEEE-e---------CCcccchhcccCCCCCeEEEECCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 11111 1 113445544322110 1112222211 1346899999999999997 7889999975
Q ss_pred CcCCeEEEEeccCCCCCCCCc
Q 019076 300 GMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 300 ~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| ++|++|||..||+....
T Consensus 327 -dg-~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 327 -DG-RIVINEVNTLPGFTRIS 345 (386)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-cEEEEEeECCCCCCccC
Confidence 34 69999999999987653
|
| >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-19 Score=171.32 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=149.9
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-Ch
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL-SI 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~-~~ 155 (346)
.+|++|.-+.+.... ..++...+. -|++++ .++.++..++||..+.++|++ .||++|++.++..... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKD-------LGIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHH-------HTCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCcCCCCEEEEeCCchHHH
Confidence 478888776543211 235666654 578887 779999999999999999997 4899999998853221 12
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc-------cCCCeEEEecccCCC-eE---EEEEEECCEEEE
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-IL---FKIYIIGETIKV 224 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~p~v~QEfI~h~G-~~---~KV~VvG~~v~~ 224 (346)
. ....++||+|+||..++ .|.++.++.++++|.. .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 179 ~---~~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~ 249 (367)
T 2pvp_A 179 L---DLMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCF 249 (367)
T ss_dssp H---HHCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEE
T ss_pred H---HHhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEE
Confidence 1 13568999999998643 3688999999988764 256899999995 7 88 77888 887433
Q ss_pred -EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEecC
Q 019076 225 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHG 300 (346)
Q Consensus 225 -~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~ 300 (346)
..+.. +. .++|+|......+.+ ....|. .++ ..+.++++|.++.++||+. ++++|++++
T Consensus 250 ~~~ei~-~~---------~~~~d~~~ky~~g~~---~~~~Pa--~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-- 312 (367)
T 2pvp_A 250 SYIEEP-NK---------QEFLDFKQKYLDFSR---NKAPKA--SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-- 312 (367)
T ss_dssp EEEEET-TT---------TEEECCCCSSCCSCC---CSCCCC--CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--
T ss_pred EEEEEe-cC---------CceEcccccccCCCe---eEEecC--CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--
Confidence 22322 11 245565443322110 011121 122 1356899999999999985 889999997
Q ss_pred cCCeEEEEeccCCCCCCCCcccHHHHHHHHHHHHHh
Q 019076 301 MRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQS 336 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~~~~~~l~~~l~~~i~~ 336 (346)
+| ++||+|||..||+.+..-++ -+.+.+.+++..
T Consensus 313 ~g-~~~vlEiN~rpg~t~~s~~p-~~~~l~~~li~~ 346 (367)
T 2pvp_A 313 EN-EVYLNEINPIPGSLANYLFD-DFKTTLENLAQS 346 (367)
T ss_dssp TT-EEEEEEEESSCGGGGGGGSS-SHHHHHHHHHHH
T ss_pred CC-eEEEEEEeCCCCCCcccccC-CHHHHHHHHHhC
Confidence 23 79999999999986433332 344444555444
|
| >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=172.90 Aligned_cols=215 Identities=16% Similarity=0.131 Sum_probs=144.4
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeeeCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC-h
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 155 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VIDp-~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~-~ 155 (346)
.+|+|+.=+.+... -..++.+.+. -|++++.| +.++..++||..|.++|++ +||++|+++++...... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAA-------DGLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEECcccchh
Confidence 58999877744211 1235666654 46888776 8999999999999999997 58999999998643321 1
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEE-----E
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETI-----K 223 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v-----~ 223 (346)
.+ ....++||+|+||..++ .|.++.++.++++|... +.++++||||+ |+.+.|.|+|+.- .
T Consensus 181 ~~--~~~~lg~PvvVKP~~gg---ss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~ 253 (373)
T 3lwb_A 181 RQ--ECERLGLPVFVKPARGG---SSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTLEAS 253 (373)
T ss_dssp HH--HHHHHCSCEEEEESBCS---TTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCEEEC
T ss_pred HH--HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCceEEe
Confidence 12 24568999999998644 37889999999988642 57899999996 8999999998751 1
Q ss_pred EEEeecCCCcccchhhcccceeecccccccccc--cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019076 224 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 300 (346)
Q Consensus 224 ~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~ 300 (346)
...+....... + ....+|+|......+.. ..++.+++. ..+.++++|.++.++||+ .++++|++++.
T Consensus 254 ~~~ei~~~~~~--~--~~~~~~d~~~ky~~~~~~~~~Pa~l~~~-----~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 323 (373)
T 3lwb_A 254 TLGEIRVAGVR--G--REDSFYDFATKYLDDAAELDVPAKVDDQ-----VAEAIRQLAIRAFAAIDCRGLARVDFFLTD- 323 (373)
T ss_dssp CCEEEECCSTT--C--SEESSSCHHHHHTCTTCEEESSCCCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEEEEEET-
T ss_pred eeeEEEccCCC--C--ccccccchhhcccCCCceEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 11111100000 0 00014444433221110 112222211 135689999999999999 58899999985
Q ss_pred cCCeEEEEeccCCCCCCCCc
Q 019076 301 MRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 301 ~g~~~~ViDVN~fPg~~gv~ 320 (346)
+| . ||+|||..||+....
T Consensus 324 dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp TE-E-EEEEEESSCCCSTTS
T ss_pred CC-C-EEEEecCCCCCCccc
Confidence 34 6 999999999988644
|
| >3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-19 Score=186.87 Aligned_cols=247 Identities=14% Similarity=0.129 Sum_probs=158.3
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCCCCCccEEEEcccchhhHHHHHHHHHhCCCe-eeeChHHHHHHhcCHHHH
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV-TILDPPDAIKHLHNRQSM 124 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~~fDvilhK~t~~~~~~~l~~y~~~~p~v-~VIDp~~ai~~l~dR~~~ 124 (346)
..+++.|+ ++||+++.|+++.++...+--|.+ .+. .++. ..-++..++..+.||..+
T Consensus 436 ~~Iv~~A~------~~gid~~vlg~e~~l~~lg~~~~~-~~i---------------g~~~~t~~~s~~aa~~~~DK~~t 493 (757)
T 3ln7_A 436 QALLFDVI------QKGIHTEILDENDQFLCLKYGDHI-EYV---------------KNGNMTSHDSYISPLIMENKVVT 493 (757)
T ss_dssp HHHHHHHH------HHTCEEEEEETTTTEEEEEETTEE-EEE---------------ETTTBCSSSBSHHHHHHHHSHHH
T ss_pred HHHHHHHH------HhCCCEEEECCCHHHHHhcccccc-eee---------------ccCccCCCCHHHHHHHhcCHHHH
Confidence 34555566 999999999998876432222221 111 1232 345788999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEE----eChhhhhc-----
Q 019076 125 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE----- 195 (346)
Q Consensus 125 ~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv----~~~~~L~~----- 195 (346)
.+.|.+ +|||+|++.++.+ .+++.+. ....++||+|+||.. |+ .|.||.++ .+.+++.+
T Consensus 494 k~lL~~-------~GIPvP~~~~~~~-~~ea~~~-~~~~~g~PvVVKP~~--g~-~G~GV~iv~~~v~~~eel~~al~~a 561 (757)
T 3ln7_A 494 KKVLQK-------AGFNVPQSVEFTS-LEKAVAS-YALFENRAVVIKPKS--TN-YGLGITIFQQGVQNREDFAKALEIA 561 (757)
T ss_dssp HHHHHH-------HTCCCCCEEEESC-HHHHHHG-GGGSSSSCEEEEESS--CS-TTTTCEECSSCCCCHHHHHHHHHHH
T ss_pred HHHHHH-------CCcCCCCEEEECC-HHHHHHH-HHHhcCCCEEEEeCC--CC-CCCCeEEecCCCCCHHHHHHHHHHH
Confidence 999997 5899999998852 2222121 124689999999986 33 47899998 78887754
Q ss_pred --cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhh--------ccc-------ce--------------
Q 019076 196 --LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVV-------SV-------------- 244 (346)
Q Consensus 196 --l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~--------~~~-------g~-------------- 244 (346)
.+..+++||||+ |++++|+|+|++++.+.++..+++..+... .|. +.
T Consensus 562 ~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~ 639 (757)
T 3ln7_A 562 FREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQL 639 (757)
T ss_dssp HHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHH
T ss_pred HhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHH
Confidence 257899999994 899999999999987555543443211100 000 00
Q ss_pred ------eecccccccc---------cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEecC------cCC
Q 019076 245 ------FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRD 303 (346)
Q Consensus 245 ------~~~~~vs~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~------~g~ 303 (346)
++..+|...| ..+.++..... +. ...+..+++|.++++++|+.+.||||++++- .+.
T Consensus 640 ~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dv-td-~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~ 717 (757)
T 3ln7_A 640 QLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDM-TD-EMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLT 717 (757)
T ss_dssp HHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEEC-TT-TSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTT
T ss_pred HHHHcCCCccccCCCCCEEEeecccccccCccceec-cc-cCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCC
Confidence 0111111111 01112221110 00 1246689999999999999999999999731 122
Q ss_pred eEEEEeccCCCCCCCC--------cccHHHHHHHH
Q 019076 304 VFYVIDINYFPGYGKM--------PDYEHIFTDFL 330 (346)
Q Consensus 304 ~~~ViDVN~fPg~~gv--------~~~~~~l~~~l 330 (346)
++.|||||..||+.+. .+....+.+++
T Consensus 718 ~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 718 SWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp TCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred CeEEEEEcCCcchhhhhccccCCCCchHHHHHHHh
Confidence 5799999999996644 24455666654
|
| >1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=157.16 Aligned_cols=193 Identities=15% Similarity=0.167 Sum_probs=128.1
Q ss_pred CccEEEEcccch---hh--HHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC
Q 019076 79 PFDVVLHKLSGM---EW--CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 153 (346)
Q Consensus 79 ~fDvilhK~t~~---~~--~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~ 153 (346)
.+|+|+.+.... .+ ...+.+..+. .|++++|+++++..+.||..+.+.|. ++|++.++. +.+
T Consensus 79 ~~d~v~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~ 145 (316)
T 1gsa_A 79 DLDVILMRKDPPFDTEFIYATYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKA 145 (316)
T ss_dssp GSSEEEECCCCCCCHHHHHHHHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHH
T ss_pred cCCEEEEecCCCCchhhHHHHHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHH
Confidence 378898877542 11 1233333334 46889999999999999988776542 899999884 222
Q ss_pred ChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEe-Chhhhhc-------c-CCCeEEEecccCC-CeEEEEEEECCEEE
Q 019076 154 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY-DRFSLSE-------L-EPPMLLQEFVNHG-GILFKIYIIGETIK 223 (346)
Q Consensus 154 ~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~-~~~~L~~-------l-~~p~v~QEfI~h~-G~~~KV~VvG~~v~ 223 (346)
++.+.+. .++ |+|+||.. |+ +|+++.++. +.+++.. . ..++++||||+.. +.+++++++|+++.
T Consensus 146 ~~~~~~~--~~~-p~vvKP~~--g~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~ 219 (316)
T 1gsa_A 146 QLKAFWE--KHS-DIILKPLD--GM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPV 219 (316)
T ss_dssp HHHHHHH--HHS-SEEEECSS--CC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEEC
T ss_pred HHHHHHH--HcC-CEEEEECC--CC-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEe
Confidence 2322222 245 99999987 43 578999998 7766543 2 3689999999853 79999999999975
Q ss_pred E--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHH---hCCcEeEEEEEEe
Q 019076 224 V--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR---LGLRLFNIDMIRE 298 (346)
Q Consensus 224 ~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~---lGl~lfGvDvi~~ 298 (346)
+ +.|.+.. +++..+ ++.++ ...|. ++ .+.++++|.+++++ +|+.++|+|++
T Consensus 220 ~~~~~r~~~~----~~~~~~--------~~~gg------~~~~~--~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-- 275 (316)
T 1gsa_A 220 PYCLARIPQG----GETRGN--------LAAGG------RGEPR--PL--TESDWKIARQIGPTLKEKGLIFVGLDII-- 275 (316)
T ss_dssp SEEEEEECCS----SCSCCC--------GGGTC------EEEEE--EC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred eeEEEEeCCC----CCceeE--------EccCC------ccccC--CC--CHHHHHHHHHHHHHHHhCCCcEEEEEec--
Confidence 3 4554321 122211 11111 11110 11 24578999999877 59999999998
Q ss_pred cCcCCeEEEEeccC-C-CCCCCC
Q 019076 299 HGMRDVFYVIDINY-F-PGYGKM 319 (346)
Q Consensus 299 ~~~g~~~~ViDVN~-f-Pg~~gv 319 (346)
| . ||+|||. + ||+..+
T Consensus 276 ---g-~-~~iEvN~r~~~~~~~~ 293 (316)
T 1gsa_A 276 ---G-D-RLTEINVTSPTCIREI 293 (316)
T ss_dssp ---T-T-EEEEEECSSCCCHHHH
T ss_pred ---C-C-EEEEEcCCCCcchHHH
Confidence 3 3 6999999 5 576543
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=146.87 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=152.5
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCCCCC---------------------CccEEEE
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLSDQG---------------------PFDVVLH 85 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~q~---------------------~fDvilh 85 (346)
+..+||..-.-. +...+...++ +.|++++.+|.+..-.... ..|+|..
T Consensus 13 ~~k~IlIlG~G~-----~g~~la~aa~------~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 13 PGKTIGIIGGGQ-----LGRMMALAAK------EMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp TTSEEEEECCSH-----HHHHHHHHHH------HTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHH------HcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 344666654432 2344566666 8999999999864221111 1233311
Q ss_pred cccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC
Q 019076 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK 165 (346)
Q Consensus 86 K~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~ 165 (346)
-.. ......+ +.++++ ++ +-.+++++..+.||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++
T Consensus 82 ~~e-~~~~~~~-~~l~~~-g~-~~~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~-~~~~~~~--~~~~g 147 (389)
T 3q2o_A 82 EFE-NIDYRCL-QWLEKH-AY-LPQGSQLLSKTQNRFTEKNAIEK-------AGLPVATYRLVQN-QEQLTEA--IAELS 147 (389)
T ss_dssp SCC-CCCHHHH-HHHHHH-SC-CTTCSHHHHHTTSHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHHH--HHHHC
T ss_pred ccc-cccHHHH-HHHHhh-Cc-cCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECC-HHHHHHH--HHhcC
Confidence 110 0111222 333333 23 66889999999999999999987 5899999998853 2223222 23578
Q ss_pred CcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccch
Q 019076 166 LPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRE 237 (346)
Q Consensus 166 fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~ 237 (346)
||+|+||..+.| .+.+|.++.++++|.+. ..++++||||+ +++.+.|.++++ ++.+. |-. +
T Consensus 148 ~P~vvKp~~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~---e 216 (389)
T 3q2o_A 148 YPSVLKTTTGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVA---E 216 (389)
T ss_dssp SSEEEEESSCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCE---E
T ss_pred CCEEEEeCCCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCe---e
Confidence 999999986332 36899999999998764 47999999997 459999999965 33221 100 0
Q ss_pred hhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 238 LAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 238 ~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
.....+.+.. ...+..+++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-
T Consensus 217 ~~~~~g~~~~--------~~~p~~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~ 281 (389)
T 3q2o_A 217 NIHVNNILHE--------SIVPARITEE-----LSQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHN 281 (389)
T ss_dssp EEEETTEEEE--------EEESCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCG
T ss_pred eEEcCCceEE--------EECCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 0001122110 0011122211 1356899999999999996 8889999975 33 6999999999986
Q ss_pred CC
Q 019076 317 GK 318 (346)
Q Consensus 317 ~g 318 (346)
.+
T Consensus 282 s~ 283 (389)
T 3q2o_A 282 SG 283 (389)
T ss_dssp GG
T ss_pred ch
Confidence 63
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=146.35 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=141.4
Q ss_pred cCCcEEEEecCCCCC--CCC-------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHh
Q 019076 60 NKGISFVAIDQNRPL--SDQ-------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHL 118 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l--~~q-------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l 118 (346)
+.|++++.+|++..- ... ..+|+|+.-..+ .. ..+.+++++ -|+++.++++++..+
T Consensus 22 ~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~-~~-~~~~~~l~~-~gi~~~~~~~~~~~~ 98 (380)
T 3ax6_A 22 KMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEH-ID-VQTLKKLYN-EGYKIHPSPYTLEII 98 (380)
T ss_dssp HTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSC-SC-HHHHHHHHH-TTCEESSCHHHHHHH
T ss_pred HCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccC-CC-HHHHHHHHH-CCCeECCCHHHHHHh
Confidence 889999999985321 110 135666542211 11 223334444 467778999999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-C
Q 019076 119 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-E 197 (346)
Q Consensus 119 ~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-~ 197 (346)
.||..+.+.|++ ++||+|++..+.+ .+ + ....++||+|+||..+. -.|.++.++.+.+++... +
T Consensus 99 ~dK~~~~~~l~~-------~gip~p~~~~~~~-~~---~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~el~~~~~ 163 (380)
T 3ax6_A 99 QDKFVQKEFLKK-------NGIPVPEYKLVKD-LE---S--DVREFGFPVVQKARKGG--YDGRGVFIIKNEKDLENAIK 163 (380)
T ss_dssp HSHHHHHHHHHH-------TTCCCCCEEECSS-HH---H--HHHTTCSSEEEEESCCC-------EEEECSGGGGGGCCC
T ss_pred cCHHHHHHHHHH-------cCCCCCCeEEeCC-HH---H--HHHhcCCCEEEEecCCC--CCCCCeEEECCHHHHHHHhc
Confidence 999999999997 5899999997742 11 2 23468999999998633 146899999999998764 4
Q ss_pred CCeEEEecccCCCeEEEEEEECC---EEEEEEe-ecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChH
Q 019076 198 PPMLLQEFVNHGGILFKIYIIGE---TIKVVRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRP 273 (346)
Q Consensus 198 ~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R-~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~ 273 (346)
.++++||||+. |+++.|.++++ ++.+... ... +. ...+.++.. . .+..+++. ..+
T Consensus 164 ~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~-------~-~p~~l~~~-----~~~ 222 (380)
T 3ax6_A 164 GETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV-------I-APARIEEK-----YSK 222 (380)
T ss_dssp SSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE-------E-ESCSSCHH-----HHH
T ss_pred CCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE-------E-CCCCCCHH-----HHH
Confidence 78999999963 89999999864 4443211 111 00 001111100 0 01112110 134
Q ss_pred HHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 274 LLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 274 ~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.++++|.++.++||+ .++++|++.+. +| +++|+|||.-||..+
T Consensus 223 ~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 223 IAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 689999999999999 48899999975 34 699999999999754
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=141.03 Aligned_cols=223 Identities=15% Similarity=0.172 Sum_probs=145.3
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCCCC-C--------------------CCccEEEEcccchhhHHHHHHHHHhCCC
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPLSD-Q--------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPE 105 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~-q--------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~ 105 (346)
.+...++ +.|++++.+|++..-.. + ..+|+|..-... .....+....+. .
T Consensus 26 ~la~aa~------~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~-~~~~~l~~l~~~-~- 96 (377)
T 3orq_A 26 MMAQSAQ------KMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFEN-ISAQQLKLLCEK-Y- 96 (377)
T ss_dssp HHHHHHH------HTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTT-SCHHHHHHHHHH-S-
T ss_pred HHHHHHH------HCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccc-cCHHHHHHHhhh-c-
Confidence 4555666 89999999998542110 0 013444221111 112233333333 2
Q ss_pred eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeE
Q 019076 106 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 185 (346)
Q Consensus 106 v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~ 185 (346)
.+..++++++.+.||..+.+.|.+ .+||+|++..+. +.+++.+. ...++||+|+||.. |.++|+++.
T Consensus 97 -~v~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--gg~~g~Gv~ 163 (377)
T 3orq_A 97 -NIPQGYQAIQLLQDRLTEKETLKS-------AGTKVVPFISVK-ESTDIDKA--IETLGYPFIVKTRF--GGYDGKGQV 163 (377)
T ss_dssp -CCTTTTHHHHHHHSHHHHHHHHHH-------TTCCBCCEEEEC-SSTHHHHH--HHHTCSSEEEEESS--SCCTTTTEE
T ss_pred -CCCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHHcCCCEEEEeCC--CCCCCCCeE
Confidence 455788999999999999999987 589999999885 33333332 34589999999986 322578999
Q ss_pred EEeChhhhhcc-----CCCeEEEecccCCC-eEEEEEEE-C--CEEEEEEeecCCCcccchhhcccceeecccccccccc
Q 019076 186 LAYDRFSLSEL-----EPPMLLQEFVNHGG-ILFKIYII-G--ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 256 (346)
Q Consensus 186 lv~~~~~L~~l-----~~p~v~QEfI~h~G-~~~KV~Vv-G--~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~ 256 (346)
++.+++++.+. ..++++||||+ | +.+.|.++ + +++.++ |-. +.....+.+.. .
T Consensus 164 ~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g~~~~--------~ 225 (377)
T 3orq_A 164 LINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQILFK--------T 225 (377)
T ss_dssp EECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETTEEEE--------E
T ss_pred EECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECCEEEE--------E
Confidence 99999888653 47899999996 6 89999999 3 233321 110 00001121110 0
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 257 ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 257 ~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
..++.+ +..+.++++|.++.++||+. +++||++++.+ | ++||+|||.-||-.|
T Consensus 226 ~~Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~-g-~~~v~EinpR~~~sg 279 (377)
T 3orq_A 226 IVPARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSN-N-QLYVNEIAPRPHNSG 279 (377)
T ss_dssp EESCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEETT-C-CEEEEEEESSCCGGG
T ss_pred ECCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCC-C-cEEEEEeeCCcCCCC
Confidence 001122 12567899999999999997 88999999842 3 699999999999443
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=148.95 Aligned_cols=183 Identities=14% Similarity=0.169 Sum_probs=125.7
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEcc-CCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~-~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
++++..++++++.+.||..+.+.|.+ .|||+|++..+.. +.+++.+ ....++||+|+||.. |+..|.+
T Consensus 108 g~~v~p~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~--~~~~~g~P~VvKp~~--gg~~g~G 176 (403)
T 3k5i_A 108 EVKIEPSWQAIRTIQNKFNQKEHLRK-------YGIPMAEHRELVENTPAELAK--VGEQLGYPLMLKSKT--MAYDGRG 176 (403)
T ss_dssp TSEESSCHHHHHHHTSHHHHHHHHHT-------TTCCBCCEEEESSCCHHHHHH--HHHHHCSSEEEEESS--SCCTTTT
T ss_pred CCccCcCHHHHHHhcCHHHHHHHHHH-------CCcCCCCEEEEcCCCHHHHHH--HHHHhCCCEEEEeCC--CCcCCCC
Confidence 77889999999999999999999986 5899999998852 2222222 224588999999985 3224789
Q ss_pred eEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccC
Q 019076 184 LFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 184 m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
+.++.+++++... ..++++||||+ +|+.+.|.++++.--+. ..|-. +.....+.+... ..
T Consensus 177 v~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~---~~~~~~g~~~~~--------~~ 241 (403)
T 3k5i_A 177 NFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTV---ETVQEDSICKLV--------YA 241 (403)
T ss_dssp EEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCE---EEEEETTEEEEE--------EE
T ss_pred EEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCe---eeEEeCCEEEEE--------Ee
Confidence 9999999887653 46899999996 37999999997631110 11111 000011211100 00
Q ss_pred CCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCc
Q 019076 259 DAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 320 (346)
Q Consensus 259 ~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~ 320 (346)
+.. +++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.|..
T Consensus 242 Pa~~l~~~-----~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~~ 298 (403)
T 3k5i_A 242 PARNVSDA-----INQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGHY 298 (403)
T ss_dssp SCSSCCHH-----HHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGTT
T ss_pred CCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCce
Confidence 111 2211 1346789999999999996 7789999975 33 69999999999987543
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=142.55 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=115.2
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.++++++.++||..|-+.|++ +|||+|++..+.+ .+++ ....++||+|+||.. |+ .|.+|.++.+
T Consensus 102 ~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~-~~~~----~~~~~g~P~vvKp~~--g~-gs~Gv~~v~~ 166 (425)
T 3vot_A 102 LPFTTMENCRNKNKTRSILQQ-------NGLNTPVFHEFHT-LADL----ENRKLSYPLVVKPVN--GF-SSQGVVRVDD 166 (425)
T ss_dssp CCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESS-GGGG----TTCCCCSSEEEEESC--C------CEEECS
T ss_pred CCHHHHHHhhCHHHHHHHHHH-------CCCCCCceeccCc-HHHH----HHhhcCCcEEEEECC--CC-CCCCceEech
Confidence 578999999999999999997 5899999998853 2222 335799999999986 43 6899999999
Q ss_pred hhhhhcc------------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCcccchhhcccceeec
Q 019076 190 RFSLSEL------------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKRELAKVVSVFRF 247 (346)
Q Consensus 190 ~~~L~~l------------------~~p~v~QEfI~h~G~~~KV--~VvG~~v~~--~~R~Slp~~~~~~~~~~~g~~~~ 247 (346)
+++|.+. +.++++||||+ |..|-| ++.++++.+ +.++....- ... ..+..
T Consensus 167 ~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~~---~~~-~~~~~-- 238 (425)
T 3vot_A 167 RKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSKG---PFF-EEGVY-- 238 (425)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCCC---SBC-CCCEE--
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccCC---Ccc-ccceE--
Confidence 9887542 46799999995 777655 445666543 233221110 000 00000
Q ss_pred ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCCcc
Q 019076 248 PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 321 (346)
Q Consensus 248 ~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~ 321 (346)
..++.+++. ....+.++|.++.++||+ .++++|++.+. +| ++|++|||.-||-.+++.
T Consensus 239 ---------~~Pa~l~~~-----~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~~ 298 (425)
T 3vot_A 239 ---------IAPAQLKEE-----TRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVSH 298 (425)
T ss_dssp ---------EESCCCCHH-----HHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHHH
T ss_pred ---------eecccCCHH-----HHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCchH
Confidence 001122211 134578999999999998 48889999975 34 699999999997655543
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=145.06 Aligned_cols=231 Identities=17% Similarity=0.184 Sum_probs=145.0
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCCC---------------C---------CCCCccEEEEcccchhhHHHHHHHHHh
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRPL---------------S---------DQGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~l---------------~---------~q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
.+.+.++ +.|+.++.+|...+- . ....+|+|+.-..+ .....+.+..++
T Consensus 21 ~~~~a~~------~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~-~~~~~~a~~~~~ 93 (403)
T 4dim_A 21 GLYKAAK------ELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLD-TGIVSLARICDK 93 (403)
T ss_dssp HHHHHHH------HHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCS-TTHHHHHHHHHH
T ss_pred HHHHHHH------HCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcc-hhHHHHHHHHHH
Confidence 4556666 899999999753211 0 12357887754222 222334444333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
-|+ +-+++++++.+.||..+.+.|.+ .+|++|++..+. +.+++.+ ....++||+|+||..+. +|.
T Consensus 94 -~gl-~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~g~---gg~ 158 (403)
T 4dim_A 94 -ENL-VGLNEEAAIMCGDKYKMKEAFKK-------YNVNTARHFVVR-NENELKN--ALENLKLPVIVKATDLQ---GSK 158 (403)
T ss_dssp -HTC-SSCCHHHHHHHHCHHHHHHHHHH-------HTCCCCCEECCC-SHHHHHH--HHHTSCSSEEEECSCC-------
T ss_pred -cCc-CCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHH--HHhcCCCCEEEEECCCC---CCC
Confidence 344 46889999999999999999987 489999998764 2222222 23568999999998733 578
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCCeEEE--EEEECCEEEEEEeecCCCcccchhhcccceeeccccc
Q 019076 183 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS 251 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~K--V~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs 251 (346)
+|.++.+.++|.+. ..++++||||+ |..|- +++.++++.+..... +... .+.+ ...
T Consensus 159 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~~------~~~~---~~~ 225 (403)
T 4dim_A 159 GIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DETY------MSHT---AVP 225 (403)
T ss_dssp -CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEEE------ESSS---EEE
T ss_pred CEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--ceec------cCCC---Ccc
Confidence 99999999988653 36799999996 66554 455677766532110 0000 0000 000
Q ss_pred ccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 252 SAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
. + ...+..+++. ..+.+.++|.++.++||+. .+++|++.++ +++|++|||.-||-.+++.+
T Consensus 226 ~-~-~~~p~~l~~~-----~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~---~~~~~iEiN~R~~~~~~~~~ 288 (403)
T 4dim_A 226 V-G-HYVPLDVKDD-----IIEKTKTEVKKAIKALGLNNCAVNVDMILKD---NEVYIIELTGRVGANCLPEL 288 (403)
T ss_dssp E-E-EEESCCSCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEEET---TEEEEEEEESSCCSTTHHHH
T ss_pred e-e-EEeCCCCCHH-----HHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC---CcEEEEEEcCCCCCCcHHHH
Confidence 0 0 0001112111 1356789999999999997 5789999973 37999999999997765543
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-15 Score=142.86 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=136.9
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCCC----------------------CCCccEEEEcccchhhHHHHHHHHHhC
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLSD----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKH 103 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~~----------------------q~~fDvilhK~t~~~~~~~l~~y~~~~ 103 (346)
.++...|+ +.|++++.+|.+..-.. ...+|+|+.-...... ..+.....+.
T Consensus 14 ~~~~~~Ak------~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~ 86 (363)
T 4ffl_A 14 FEAAYLSK------KAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEK 86 (363)
T ss_dssp HHHHHHHH------HTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGG
T ss_pred HHHHHHHH------HCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHH
Confidence 34566677 99999999998642111 0235666544333222 2233333455
Q ss_pred CCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCcee
Q 019076 104 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 183 (346)
Q Consensus 104 p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~ 183 (346)
.++++..++++++.+.||..+-+.|.+ ++||+|++. .++||+|+||.. |+ +|.+
T Consensus 87 ~~~~~g~~~~a~~~~~dK~~~k~~l~~-------~gip~~~~~----------------~ig~P~vvKp~~--g~-g~~g 140 (363)
T 4ffl_A 87 FSCPVLFDFEAYRISRDKKKSKDYFKS-------IGVPTPQDR----------------PSKPPYFVKPPC--ES-SSVG 140 (363)
T ss_dssp CSSCBCCCHHHHHHHTSHHHHHHHHHH-------TTCCCCCBS----------------CSSSCEEEECSS--CC-TTTT
T ss_pred CCCccCCCHHHHHHhhCHHHHHHHHHh-------cCCCCCCce----------------ecCCCEEEEECC--CC-CCcC
Confidence 678888999999999999999999997 578888642 368999999986 33 5789
Q ss_pred eEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCE--EEEE--EeecCCCcccchhhcccceeecccccccccccCC
Q 019076 184 LFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGET--IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 184 m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~~--v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
|.++.+.+++......+++|||| .|..+-|.++++. ..+. .+...++ ...+ +
T Consensus 141 v~~v~~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~-~----- 196 (363)
T 4ffl_A 141 ARIIYDDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC-H----- 196 (363)
T ss_dssp CEEEC------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-E-----
T ss_pred eEEeccHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-e-----
Confidence 99999999999999999999999 4888988888543 2221 1111000 0000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINY-FPGY 316 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~-fPg~ 316 (346)
.. .+.+..+.++++|.++.++||+. ++++|++.+. +++||+|||. |||.
T Consensus 197 -~~----~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~---~~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 197 -MV----TPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP---KGLRVIEIDARFPSQ 247 (363)
T ss_dssp -EE----EECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET---TEEEEEEEECSCCSS
T ss_pred -ee----cchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC---CeEEEEEEeCCCCCC
Confidence 00 11223466899999999999986 6679999975 3699999999 7874
|
| >3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-15 Score=141.76 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=141.6
Q ss_pred cCCcEEEEecCCCCC--CCC------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhc
Q 019076 60 NKGISFVAIDQNRPL--SDQ------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH 119 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l--~~q------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~ 119 (346)
+.|++++.+|++..- ... ..+|+|+.-.... ....++ ..++. | ++.+++++++.+.
T Consensus 20 ~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~-~l~~~-g-~~g~~~~~~~~~~ 95 (369)
T 3aw8_A 20 PLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAAR-RLEGR-L-PLYPPAKALEVAQ 95 (369)
T ss_dssp TBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHH-HHHHH-S-CBSSCHHHHHHHT
T ss_pred HcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHH-HHHHc-C-CcCCCHHHHHHhc
Confidence 889998888875321 110 2467776544332 223333 33332 4 6788999999999
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..+.+.|++ .+||+|++..+. +.+++.+ ....++||+|+||..+. -+|.++.++.+++++.+.
T Consensus 96 dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~~~--~~g~Gv~~v~~~~el~~~~~~ 163 (369)
T 3aw8_A 96 DRLREKTFFQG-------LGVPTPPFHPVD-GPEDLEE--GLKRVGLPALLKTRRGG--YDGKGQALVRTEEEALEALKA 163 (369)
T ss_dssp CHHHHHHHHHH-------HTCCCCCEEEES-SHHHHHH--HHTTTCSSEEEEECCC--------EEEECSHHHHHHHHTT
T ss_pred CHHHHHHHHHH-------CCCCCCCceeeC-CHHHHHH--HHHHcCCCEEEEEcCCC--CCcceEEEECCHHHHHHHHHh
Confidence 99999999997 489999999885 2222222 23468999999998643 136789999999887653
Q ss_pred --CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCC
Q 019076 197 --EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELP 270 (346)
Q Consensus 197 --~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p 270 (346)
..++++||||+. |+.+.|.++++ ++.+..+. .+ .. ..+.++.+ . .+.. +++.
T Consensus 164 ~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~--~~-----~~-~~~~~~~~-------~-~p~~~l~~~----- 221 (369)
T 3aw8_A 164 LGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFYPLV--EN-----RH-WGGILRLS-------L-APAPGASEA----- 221 (369)
T ss_dssp TCSSSEEEEECCCC-SEEEEEEEEECTTSCEEECCCE--EE-----EE-ETTEEEEE-------E-ESCTTCCHH-----
T ss_pred cCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEECCe--ee-----ee-eCCEEEEE-------E-CCCCCCCHH-----
Confidence 468999999963 89999999974 44331110 00 00 01111110 0 0111 2110
Q ss_pred ChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 271 PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 271 ~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
..+.++++|.++.++||+. ++++|++.+. | +++++|||.-||..+
T Consensus 222 ~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 222 LQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSG 267 (369)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCcc
Confidence 1346799999999999996 7889999975 3 799999999998754
|
| >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=142.18 Aligned_cols=181 Identities=16% Similarity=0.186 Sum_probs=122.8
Q ss_pred CCccEEEEcccchh-hHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 78 GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 78 ~~fDvilhK~t~~~-~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.++|+++.-..+.. ..+.+.+..+ .++..+.+++++++.+.||..+.+.|+ . +|++|++++
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~-~~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHH-TTSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHH-hcCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 47898777644332 2233334443 367889999999999999999999988 4 899999884
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECC-EEEEEEeecCCCccc
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSLPNVSK 235 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~VvG~-~v~~~~R~Slp~~~~ 235 (346)
..++||+|+||..++ +|.++.++.+ ...++++||||+ |+++.|.++++ .+..+.+.. .+
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~--~~-- 189 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE--QI-- 189 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE--EE--
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee--Ee--
Confidence 147899999999743 5788888887 567899999996 99999999954 343322110 00
Q ss_pred chhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CC-cEeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GL-RLFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-Gl-~lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
... +.+.. + ..+..+++ +..+.++++|.++.++| |+ .++|+|++.+ | ++|++|||.-
T Consensus 190 ---~~~---~~~~g----~--~~p~~l~~-----~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 190 ---INN---FRYAG----A--VVPARISD-----EVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp ---EET---TEEEE----E--EESCCCCH-----HHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred ---ccC---ceecc----c--cccCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 000 11100 0 00112211 12357899999999999 95 5788999984 3 5899999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9974
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=143.27 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=145.5
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCCC--------------C---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~--------------~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ +.|++++.+|.+..-. + +..+|+|+.-.-. ...+ +.+..++
T Consensus 24 ~~~~~a~~------~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~-~~~~-~~~~l~~ 95 (391)
T 1kjq_A 24 KEVAIECQ------RLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEA-IATD-MLIQLEE 95 (391)
T ss_dssp HHHHHHHH------TTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSC-SCHH-HHHHHHH
T ss_pred HHHHHHHH------HcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCc-CCHH-HHHHHHh
Confidence 34555566 8999999999753111 0 1246777653321 1122 2233333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+.+.+++++++.+.||..+.+.| ++ .+||+|++..+. +.+++.+. ...++||+|+||.. |+ +|
T Consensus 96 -~gi~~~~~~~~~~~~~dK~~~~~~l~~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--g~-gg 161 (391)
T 1kjq_A 96 -EGLNVVPCARATKLTMNREGIRRLAAEE-------LQLPTSTYRFAD-SESLFREA--VADIGYPCIVKPVM--SS-SG 161 (391)
T ss_dssp -TTCEESSCHHHHHHHHSHHHHHHHHHTT-------SCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEEESC--C----
T ss_pred -CCCCcCCCHHHHHHhhCHHHHHHHHHHh-------CCCCCCCeeeeC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CC
Confidence 4677889999999999999999998 54 589999999875 22223222 23478999999985 33 57
Q ss_pred eeeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCcccchhhcccceeecc
Q 019076 182 HELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFP 248 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG~--~v~~~~R~Slp~~~~~~~~~~~g~~~~~ 248 (346)
.+|.++.+.+++... ..++++||||+. |.++.|.++++ .+... +.. +... ..+.+ .
T Consensus 162 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~-----~~~--~~~~-~~~~~--~ 230 (391)
T 1kjq_A 162 KGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFC-----APV--GHRQ-EDGDY--R 230 (391)
T ss_dssp CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEEC-----CCE--EEEE-ETTEE--E
T ss_pred CCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEc-----cCc--ceEE-ECCEE--E
Confidence 899999999887542 468999999974 89999988843 32211 100 0000 00111 0
Q ss_pred cccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 249 RVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 249 ~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.. . .+..+++. ..+.+.++|.++.++||+ .++++|++.+.+ ++||+|||.-||-.+.
T Consensus 231 ~~-----~-~p~~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 231 ES-----W-QPQQMSPL-----ALERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp EE-----E-ECCCCCHH-----HHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred EE-----E-eCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 00 0 01112110 134688999999999999 778899999753 6999999999996544
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=144.79 Aligned_cols=228 Identities=13% Similarity=0.174 Sum_probs=143.5
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCC--------------CC---------CCCccEEEEcccchhhHHHHHHHHHh
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQK 102 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l--------------~~---------q~~fDvilhK~t~~~~~~~l~~y~~~ 102 (346)
..+...++ ++|++++.+|.+..- .+ +..+|+|+.-... .... +.+..++
T Consensus 32 ~~~~~a~~------~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~-~~~~-~~~~l~~ 103 (433)
T 2dwc_A 32 KEIAIEAQ------RLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEA-INLD-ALFEFEK 103 (433)
T ss_dssp HHHHHHHH------HTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSC-SCHH-HHHHHHH
T ss_pred HHHHHHHH------HCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECccc-CCHH-HHHHHHh
Confidence 34455566 899999999875311 00 1257888765432 1122 2233333
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L-~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
-|+++.+++++++.+.||..+.+.| ++ .+||+|++..+.+ .+++.+. ...++||+|+||.. |+ +|
T Consensus 104 -~gi~~~~~~~~~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~~-~~~~~~~--~~~~g~P~vvKp~~--g~-gg 169 (433)
T 2dwc_A 104 -DGYFVVPNARATWIAMHRERLRETLVKE-------AKVPTSRYMYATT-LDELYEA--CEKIGYPCHTKAIM--SS-SG 169 (433)
T ss_dssp -TTCCBSSCHHHHHHHHCHHHHHHHHHHT-------SCCCCCCEEEESS-HHHHHHH--HHHHCSSEEEEECC--C----
T ss_pred -cCCeeCCCHHHHHHhhCHHHHHHHHHHh-------cCCCCCCeeEeCC-HHHHHHH--HHhcCCCEEEEECC--Cc-CC
Confidence 4667789999999999999999998 65 5899999998752 2223222 23478999999985 33 67
Q ss_pred eeeEEEeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEEC-----CEE-EEEEeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIG-----ETI-KVVRRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~VvG-----~~v-~~~~R~Slp~~~~~~~~~~~g~ 244 (346)
.+|.++.++++|... ..++++||||+. |.++.|.+++ +++ ..+. ....+. . ..+.
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~-~~~~~~-----~-~~~~ 241 (433)
T 2dwc_A 170 KGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFP-KPVGHY-----Q-IDGD 241 (433)
T ss_dssp ---EEECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEE-CCEEEE-----E-SSSS
T ss_pred CCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEe-cccceE-----E-EcCE
Confidence 899999999887542 368999999974 8999998873 332 2111 110000 0 0011
Q ss_pred eecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 245 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
+. .. . .+..+++. ..+.+.++|.++.++||+ .++++|++++.+ ++||+|||.-||-.+.
T Consensus 242 ~~--~~-----~-~p~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 242 YH--AS-----W-QPAEISEK-----AEREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp EE--EE-----E-ESCCCCHH-----HHHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred EE--EE-----E-cCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 10 00 0 01112110 134689999999999999 677899999753 6999999999997654
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=142.23 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=153.1
Q ss_pred CcEEEEEEecccccccccchHHHHHHhhhcccccCCcEEEEecCCCCCC-----C---CC-------------CccEEEE
Q 019076 27 ERLVVGYALTSKKKKSFLQPKLEILARYILTHTNKGISFVAIDQNRPLS-----D---QG-------------PFDVVLH 85 (346)
Q Consensus 27 ~~~~vGy~l~~kK~~~~~~~~~~~~~r~~~~~~~~Gi~~v~id~~~~l~-----~---q~-------------~fDvilh 85 (346)
+..+||..-.-. +...+...++ +.|++++.+|.+..-. + .. .+|+|+.
T Consensus 34 ~~~~IlIlG~G~-----lg~~~~~aa~------~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 34 PGAWLGMVGGGQ-----LGRMFCFAAQ------SMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp TTCEEEEECCSH-----HHHHHHHHHH------HTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCH-----HHHHHHHHHH------HCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 344555554321 2344566666 9999999999753110 0 01 2567663
Q ss_pred cccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhC--
Q 019076 86 KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG-- 163 (346)
Q Consensus 86 K~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~-- 163 (346)
-... .. ..+.+++++. .++..++++++.+.||..+.+.|.+ .|||+|++..+.+ .+++.+. ...
T Consensus 103 ~~e~-~~-~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~~-~~e~~~~--~~~~~ 168 (419)
T 4e4t_A 103 EFEN-VP-AASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEA-------SGVPVAPHVVIES-AAALAAL--DDAAL 168 (419)
T ss_dssp CCTT-CC-HHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHH-------TTCCBCCEEEECS-HHHHHTS--CHHHH
T ss_pred ccCc-CC-HHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHH-------cCcCCCCeEEECC-HHHHHHH--HHhhc
Confidence 2211 12 2233344444 4788999999999999999999987 5899999998852 2222221 123
Q ss_pred --CCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCc
Q 019076 164 --LKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNV 233 (346)
Q Consensus 164 --l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~ 233 (346)
+ ||+|+||.. .|+ .+.++.++.+++++... ..++++||||+. ++.+.|.++++ .+.++ |-.
T Consensus 169 ~~~-~P~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~-----~~~ 239 (419)
T 4e4t_A 169 DAV-LPGILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF-----PLA 239 (419)
T ss_dssp HTT-CSEEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC-----CCE
T ss_pred ccc-CCEEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE-----eCe
Confidence 7 999999972 244 67899999999988653 468999999973 78899999853 22221 100
Q ss_pred ccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEecc
Q 019076 234 SKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDIN 311 (346)
Q Consensus 234 ~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN 311 (346)
+.....+.+... . .+.. +++. ..+.++++|.++.++||+. +++||++++. +| ++||+|||
T Consensus 240 ---e~~~~~g~~~~~-------~-~Pa~~l~~~-----~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiN 301 (419)
T 4e4t_A 240 ---QNVHHNGILALT-------I-VPAPAADTA-----RVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMA 301 (419)
T ss_dssp ---EEEEETTEEEEE-------E-ESCTTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEE
T ss_pred ---EEEeeCCeEEEE-------E-cCCCCCCHH-----HHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEe
Confidence 000011211110 0 0111 2211 1356889999999999996 7889999975 34 69999999
Q ss_pred CCCCCCC
Q 019076 312 YFPGYGK 318 (346)
Q Consensus 312 ~fPg~~g 318 (346)
.-||-.+
T Consensus 302 pR~~~sg 308 (419)
T 4e4t_A 302 PRPHNSG 308 (419)
T ss_dssp SSCCGGG
T ss_pred CCCCCCC
Confidence 9999654
|
| >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=138.30 Aligned_cols=223 Identities=8% Similarity=-0.003 Sum_probs=147.7
Q ss_pred HHHHHHhhhcccccCCcEEEEecCCCC--CCCCC-CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHH
Q 019076 47 KLEILARYILTHTNKGISFVAIDQNRP--LSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 123 (346)
Q Consensus 47 ~~~~~~r~~~~~~~~Gi~~v~id~~~~--l~~q~-~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~ 123 (346)
.+...|+ +.|+++ +|++.. -.-.+ .+|+|..-... .....+... ++. + .|..+++++..+.||..
T Consensus 15 m~~~aa~------~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~-v~~~~l~~l-~~~-~-~v~p~~~a~~~~~DK~~ 82 (355)
T 3eth_A 15 MLRQAGE------PLGIAV--WPVGLDAEPAAVPFQQSVITAEIER-WPETALTRQ-LAR-H-PAFVNRDVFPIIADRLT 82 (355)
T ss_dssp HHHHHHG------GGTCEE--EEECTTCCGGGCCCTTSEEEESCSC-CCCCHHHHH-HHT-C-TTBTTTTHHHHHHSHHH
T ss_pred HHHHHHH------HCCCEE--ECCCCCCCceEEcccCCEEEECcCC-cCHHHHHHH-Hhc-C-CcCCCHHHHHHhcCHHH
Confidence 4455566 999999 565432 11111 56777665432 222333333 333 3 78899999999999999
Q ss_pred HHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC--hhhhhc--cCCC
Q 019076 124 MLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPP 199 (346)
Q Consensus 124 ~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~--~~~L~~--l~~p 199 (346)
+-+.|.+ .+||+|++..+. +.+++.+. ...++||+|+||.. .|+ .++++.++.+ +++|.+ +. +
T Consensus 83 ~k~~l~~-------~GIptp~~~~v~-~~~e~~~~--~~~~G~P~VvKp~~-~G~-~GkGv~~v~~~~~~el~~a~~~-~ 149 (355)
T 3eth_A 83 QKQLFDK-------LHLPTAPWQLLA-ERSEWPAV--FDRLGELAIVKRRT-GGY-DGRGQWRLRANETEQLPAECYG-E 149 (355)
T ss_dssp HHHHHHH-------TTCCBCCEEEEC-CGGGHHHH--HHHHCSEEEEEESS-SCC-TTTTEEEEETTCGGGSCGGGTT-T
T ss_pred HHHHHHH-------CccCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEecC-CCC-CCCeEEEEcCCCHHHHHHHhhC-C
Confidence 9999987 589999999885 33333332 24589999999985 234 6799999999 888765 24 7
Q ss_pred eEEEecccCCCeEEEEEEECC---EEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHH
Q 019076 200 MLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLE 276 (346)
Q Consensus 200 ~v~QEfI~h~G~~~KV~VvG~---~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~ 276 (346)
+++||||+ .++.+-|.++++ .+.+ .|-. +.....+.+.+.. .+..+++. ..+.++
T Consensus 150 vivEe~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~~--------~pa~l~~~-----~~~~~~ 207 (355)
T 3eth_A 150 CIVEQGIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTSV--------AFPQANAQ-----QQARAE 207 (355)
T ss_dssp EEEEECCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEEE--------ECSSCCHH-----HHHHHH
T ss_pred EEEEEccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEEE--------CCCCCCHH-----HHHHHH
Confidence 99999997 478999999843 3332 1110 0000112222110 01122211 135689
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 277 RLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 277 ~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
++|.++.++||.. ++++|++++. +++||+|||.-|+-.|.
T Consensus 208 ~~a~~i~~aLg~~G~~~vEf~~~~---~~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 208 EMLSAIMQELGYVGVMAMECFVTP---QGLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEEET---TEEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHCCCeeEEEEEEEEEC---CcEEEEEeeCCCCCCcc
Confidence 9999999999985 7889999974 26999999999997554
|
| >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=136.31 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCee-eeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 104 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 104 p~v~-VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
.|++ +.++++++..+.||..+.+.|.+ .+|++|+++.. .+++.+.+....++||+|+||..+. +|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~---~~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLR-------QGIAHARTYAT---MASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHH-------HTCCCCCEESS---HHHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHH-------cCCCCCcEEec---HHHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 4675 46889999999999999999997 48999998742 1122222212468999999998743 478
Q ss_pred eeEEEeChhhhhcc---CCCeEEEecccCCCeEEEEEEEC----CEEE-EEEeecCCCcccchhhcccceeecccccccc
Q 019076 183 ELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIG----ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 254 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~VvG----~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~ 254 (346)
++.++.+.+++... ..++++||||+ |..+.|.+++ +++. +..+..+. . ..|....
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~~~~------- 226 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGETDK------- 226 (331)
T ss_dssp -------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTEEEE-------
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCceeE-------
Confidence 99999999888764 46899999996 7999988875 3443 33332211 0 0111000
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019076 255 ASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINY-FPGY 316 (346)
Q Consensus 255 ~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~-fPg~ 316 (346)
.. + +..+.+.++|.++.++||+ .++++|++.. +| ++|++|||. +||.
T Consensus 227 ------~~-~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 227 ------SR-S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp ------EE-E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTT
T ss_pred ------eE-E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCc
Confidence 00 0 1235689999999999999 6778999954 23 799999999 5664
|
| >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=131.46 Aligned_cols=226 Identities=15% Similarity=0.156 Sum_probs=132.2
Q ss_pred hHHHHHHhhhcccccCCcEEEEecCCCCC--------CC---CCC-c---------cEEEEcccchhhHHHHHHHHHhCC
Q 019076 46 PKLEILARYILTHTNKGISFVAIDQNRPL--------SD---QGP-F---------DVVLHKLSGMEWCKIIEDYRQKHP 104 (346)
Q Consensus 46 ~~~~~~~r~~~~~~~~Gi~~v~id~~~~l--------~~---q~~-f---------DvilhK~t~~~~~~~l~~y~~~~p 104 (346)
..+.+.++ ++|++++.+|.+... .+ ..+ + |+|+.- .+.......+.+ +..
T Consensus 14 ~~l~~a~~------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~--~e~~~~~~~~~l-e~~ 84 (334)
T 2r85_A 14 LQILKGAK------DEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT--GSFVAHLGIELV-ENM 84 (334)
T ss_dssp HHHHHHHH------HTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC--TTHHHHHCHHHH-HTC
T ss_pred HHHHHHHH------hCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC--cchhhhhHHHHH-HHc
Confidence 34556666 899999999987421 01 112 2 555422 111111111222 346
Q ss_pred CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceee
Q 019076 105 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 184 (346)
Q Consensus 105 ~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m 184 (346)
+++++++++++..+.||..+.+.|++ ++|++|++ +. +. ..++||+|+||..+. +|.++
T Consensus 85 g~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv 142 (334)
T 2r85_A 85 KVPYFGNKRVLRWESDRNLERKWLKK-------AGIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGY 142 (334)
T ss_dssp CSCBBSCTTHHHHHHSHHHHHHHHHH-------TTCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTC
T ss_pred CCCccCCHHHHHHHHhHHHHHHHHHH-------cCCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCE
Confidence 78888999999999999999999986 58999998 32 11 126799999998733 57899
Q ss_pred EEEeChhhhhcc----------C--CCeEEEecccCCCeEEEEEE----ECCEEEEE---EeecCCCcccchhhc--ccc
Q 019076 185 FLAYDRFSLSEL----------E--PPMLLQEFVNHGGILFKIYI----IGETIKVV---RRFSLPNVSKRELAK--VVS 243 (346)
Q Consensus 185 ~lv~~~~~L~~l----------~--~p~v~QEfI~h~G~~~KV~V----vG~~v~~~---~R~Slp~~~~~~~~~--~~g 243 (346)
.++.+.++|... . .++++||||+ |..+-+.+ +++++.+. .|..... +.... ...
T Consensus 143 ~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~---~~~~~~~~~~ 217 (334)
T 2r85_A 143 FLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNV---DAIGRIPAKD 217 (334)
T ss_dssp EEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEG---GGGGGSCHHH
T ss_pred EEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEecc---Cccccccccc
Confidence 999999887542 2 6899999995 77664221 22322111 1110000 00000 000
Q ss_pred eeec---ccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEEeccCCC
Q 019076 244 VFRF---PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 244 ~~~~---~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lG------l~lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
.+.. +.....+.. +..+++ ...+.++++|.++.++|| ..++++|++++. +| ++||+|||.-|
T Consensus 218 ~~~~~~~~~~~~~g~~--p~~l~~-----~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~ 288 (334)
T 2r85_A 218 QLEFDMDITYTVIGNI--PIVLRE-----SLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARI 288 (334)
T ss_dssp HTTSCCCCCEEEEEEE--ECCCCG-----GGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSC
T ss_pred ccccccCCceeeeCCC--CcccCH-----HHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCc
Confidence 0000 000000000 111211 124668999999999994 567789999974 33 69999999999
Q ss_pred CC
Q 019076 315 GY 316 (346)
Q Consensus 315 g~ 316 (346)
|-
T Consensus 289 g~ 290 (334)
T 2r85_A 289 VA 290 (334)
T ss_dssp CG
T ss_pred CC
Confidence 86
|
| >3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=135.43 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=128.5
Q ss_pred CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhH
Q 019076 79 PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ 158 (346)
Q Consensus 79 ~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~ 158 (346)
.+|+|+. .++ .....+.+..++ -|++ -.+++++..+.||..+.+.|.+ .||++|++..+.+ .+++.+
T Consensus 102 ~id~Vip-~sE-~~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s-~ee~~~- 168 (474)
T 3vmm_A 102 GADAITT-NNE-LFIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNK-------AGVKSIKNKRVTT-LEDFRA- 168 (474)
T ss_dssp TCSEEEE-SCG-GGHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHH-------TTSCCCCEEEECS-HHHHHH-
T ss_pred CCCEEEE-CCc-ccHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECC-HHHHHH-
Confidence 3566666 332 333344444444 4666 8899999999999999999997 5899999988852 222222
Q ss_pred HHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------------CCCeEEEecccCCC---------
Q 019076 159 VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------------EPPMLLQEFVNHGG--------- 210 (346)
Q Consensus 159 l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------------~~p~v~QEfI~h~G--------- 210 (346)
....++||+|+||..+. +|.+|.++.++++|.+. ..++++||||+..-
T Consensus 169 -~~~~lg~PvVVKP~~g~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~ 244 (474)
T 3vmm_A 169 -ALEEIGTPLILKPTYLA---SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGY 244 (474)
T ss_dssp -HHHHSCSSEEEEESSCC---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSS
T ss_pred -HHHHcCCCEEEEECCCC---cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccc
Confidence 23468999999998733 57899999999887532 36899999997321
Q ss_pred ---eEEEEEEECCEEEEE--EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 019076 211 ---ILFKIYIIGETIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR 285 (346)
Q Consensus 211 ---~~~KV~VvG~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~ 285 (346)
..+.+++.++++.++ .++. +.. .+... + . . .+..+++. ..+.+.++|.++.++
T Consensus 245 ~~e~sv~~v~~dg~~~~v~i~~~~-~~~---~~~~~-~-------~----~-~Pa~l~~~-----~~~~l~~~a~~~~~a 302 (474)
T 3vmm_A 245 SDYISIEGIMADGEYFPIAIHDKT-PQI---GFTET-S-------H----I-TPSILDEE-----AKKKIVEAAKKANEG 302 (474)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEC-CCB---TTBCC-E-------E----E-ESCCCCHH-----HHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEECCeEEEEEEEeec-cCC---Cccce-E-------E----E-ECCCCCHH-----HHHHHHHHHHHHHHH
Confidence 234456777775432 2221 110 00000 0 0 0 01122111 135689999999999
Q ss_pred hCCcEeE--EEEEEecCcCCeEEEEeccCCCC
Q 019076 286 LGLRLFN--IDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 286 lGl~lfG--vDvi~~~~~g~~~~ViDVN~fPg 315 (346)
+|+.-.+ +|++.+. +| ++|+||||.-+|
T Consensus 303 lG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 303 LGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp HTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred cCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 9998776 9999975 34 799999997765
|
| >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=135.61 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=114.8
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
.|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+. ...++||+|+||.. |+ .|.
T Consensus 84 ~gi~~~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~~~P~vvKp~~--~~-gg~ 150 (417)
T 2ip4_A 84 RGLLLFGPTQKAAMIEGSKAFAKGLMER-------YGIPTARYRVFR-EPLEALAY--LEEVGVPVVVKDSG--LA-AGK 150 (417)
T ss_dssp HTCCEESCCHHHHHHHHCHHHHHHHHHH-------TCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEECTT--SC-SST
T ss_pred CCCCEECccHHHHHHHcCHHHHHHHHHH-------cCCCCCCeeeeC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCC
Confidence 467777 889999999999999999997 589999998874 22223222 23478999999986 33 578
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCcccchhhcccceeeccc
Q 019076 183 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSVFRFPR 249 (346)
Q Consensus 183 ~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~ 249 (346)
+|.++.+.+++.+. ..++++||||+ |.++.|.+++ +.+... .|..-+.. +.. .+ .++
T Consensus 151 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~~~--~~-~~~-- 220 (417)
T 2ip4_A 151 GVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLL---DGD--QG-PMT-- 220 (417)
T ss_dssp TCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEE---TTT--EE-EEC--
T ss_pred CEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhc---cCC--CC-CcC--
Confidence 99999999887642 26899999996 8899998883 334332 12111100 000 00 000
Q ss_pred ccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 250 VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 250 vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl---~lfGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.. .+...|. .+++ .+.+ ++++.++.++| |+ .++++|++.+. +| +||+|||.-||-.
T Consensus 221 g~-------~~~~~p~--~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 221 GG-------MGAVAPY--PMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp SC-------SEEEESC--CCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred CC-------CeeeeCC--CCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 0001111 1111 1223 55577777776 44 45679999874 33 8999999999844
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=132.05 Aligned_cols=176 Identities=14% Similarity=0.228 Sum_probs=120.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++++ .++++++.+.||..+.+.|.+ .||++|++. .+. +.+++.+ ....++||+|+||.. |+ +
T Consensus 102 ~g~~~~g~~~~~~~~~~dK~~~~~~l~~-------~Gip~p~~~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~--g~-g 168 (446)
T 3ouz_A 102 HNIKFIGPSVEAMNLMSDKSKAKQVMQR-------AGVPVIPGSDGALA-GAEAAKK--LAKEIGYPVILKAAA--GG-G 168 (446)
T ss_dssp TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSSCC-SHHHHHH--HHHHHCSSEEEEETT--CC-T
T ss_pred CCCceECcCHHHHHHhCCHHHHHHHHHH-------cCCCcCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECC--CC-C
Confidence 467877 889999999999999999987 589999986 342 2222222 224588999999986 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCcccchhhccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVV 242 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~~~~~~~~ 242 (346)
|.+|.++.++++|.+. ..++++||||+ +++.+.|.|+++. +. ...|. +...- ..
T Consensus 169 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~-------~~ 240 (446)
T 3ouz_A 169 GRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQRR-------HQ 240 (446)
T ss_dssp TCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEET-------TE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeeec-------Cc
Confidence 7899999999987642 57899999996 2388999888653 32 22221 11000 00
Q ss_pred ceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 243 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 243 g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.... .. +. .+++ ...+.+.++|.++.++||+.- +++|++.+.+ | ++|++|||.-|+-.
T Consensus 241 ~~~~---------~~-p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 241 KLIE---------ES-PAILLDE-----KTRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQVE 300 (446)
T ss_dssp EEEE---------EE-SCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCCTT
T ss_pred eEEE---------EC-CCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCCCc
Confidence 0000 00 11 1111 113568899999999999964 5599999853 3 69999999999743
|
| >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-13 Score=133.21 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=121.6
Q ss_pred CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh
Q 019076 78 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 155 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~ 155 (346)
..+|+|+.- .+.. ...+.+.+++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++..+. +.+++
T Consensus 82 ~~~d~vi~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~ 150 (451)
T 2yrx_A 82 QAIDLTIVG--PEAPLASGIVDRFMA-EGLRIFGPSQRAALIEGSKAFAKELMKK-------YGIPTADHAAFT-SYEEA 150 (451)
T ss_dssp TTCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHH
T ss_pred cCCCEEEEC--CchHHHHHHHHHHHH-CCCCEeCccHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHH
Confidence 346666652 2222 1223333333 578887 788999999999999999987 589999998885 23223
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GE 220 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~ 220 (346)
.+. ...++||+|+||.. |+ .|.++.++.+.+++... ..++++||||+ |..+.|.++ |+
T Consensus 151 ~~~--~~~~~~PvVvKp~~--~~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 151 KAY--IEQKGAPIVIKADG--LA-AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGE 223 (451)
T ss_dssp HHH--HHHHCSSEEEEECC-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETT
T ss_pred HHH--HHhcCCcEEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCC
Confidence 222 23478999999987 33 57899999999887532 26899999997 899998877 44
Q ss_pred EEEEE--EeecCCCcccchhhcccceeeccc-ccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CCc--
Q 019076 221 TIKVV--RRFSLPNVSKRELAKVVSVFRFPR-VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR-- 289 (346)
Q Consensus 221 ~v~~~--~R~Slp~~~~~~~~~~~g~~~~~~-vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl~-- 289 (346)
.+..+ .|.. . ..+++.. ....+ .+...|. ..+++ .+.+ ++++.++.++| |+.
T Consensus 224 ~~~~~~~~~~~-~-----------~~~~~~~~~~~g~----~~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (451)
T 2yrx_A 224 KVYPLAIAQDH-K-----------RAYDGDEGPNTGG----MGAYSPV-PQISDEMMDAALEAILRPAAKALAAEGRPFL 286 (451)
T ss_dssp EEEECCCBEEC-C-----------EEETTTEEEECSC----SEEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHTTCCCE
T ss_pred EEEEeeeEEec-c-----------ccccCCCCCCCCC----CeEEccC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 33321 1110 0 0000000 00000 0001110 00111 1223 55677777766 554
Q ss_pred -EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 290 -LFNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 290 -lfGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++++|++++. + +++|+|||.-||-.+
T Consensus 287 G~~~ve~~~~~-~--g~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 287 GVLYAGLMATA-N--GPKVIEFNARFGDPE 313 (451)
T ss_dssp EEEEEEEEEET-T--EEEEEEEESSCCTTH
T ss_pred eEEEEEEEEeC-C--CcEEEEEecCCCCcH
Confidence 5668999975 2 499999999998543
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-13 Score=146.49 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=141.9
Q ss_pred cCCcEEEEecCCCCCC-------C-----------------CCCccEEEEcccchhhH---HHHHH--HHHhCCCeeee-
Q 019076 60 NKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGMEWC---KIIED--YRQKHPEVTIL- 109 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~-------~-----------------q~~fDvilhK~t~~~~~---~~l~~--y~~~~p~v~VI- 109 (346)
+.|++++.+|.+..-. + ...+|+|+.-....... ..+.+ ..++ -|+.++
T Consensus 39 ~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~-~gv~~~G 117 (1073)
T 1a9x_A 39 EEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEE-FGVTMIG 117 (1073)
T ss_dssp HHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHH-HTCEECS
T ss_pred HcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHH-cCCeeeC
Confidence 8999999999754220 0 12457776554432111 11222 3333 467887
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
.++++++.+.||..+.+.|.+ .|||+|++.++.+ .+++.+. ...++||+|+||..+.| |.++.++.+
T Consensus 118 ~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~~-~~ea~~~--~~~ig~PvVvKp~~~~G---g~Gv~iv~~ 184 (1073)
T 1a9x_A 118 ATADAIDKAEDRRRFDVAMKK-------IGLETARSGIAHT-MEEALAV--AADVGFPCIIRPSFTMG---GSGGGIAYN 184 (1073)
T ss_dssp SCHHHHHHHHSHHHHHHHHHH-------TTCCCCSEEEESS-HHHHHHH--HHHHCSSEEEEETTCCT---TTTCEEESS
T ss_pred CCHHHHHHhhCHHHHHHHHHH-------CCcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEECCCCC---CCceEEeCC
Confidence 899999999999999999997 5899999998852 2222221 24589999999987444 678999999
Q ss_pred hhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEE--E-EeecCCCcccchhhcccceeecccccccc
Q 019076 190 RFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKV--V-RRFSLPNVSKRELAKVVSVFRFPRVSSAA 254 (346)
Q Consensus 190 ~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~--~-~R~Slp~~~~~~~~~~~g~~~~~~vs~~~ 254 (346)
+++|.+. ..++++||||+ +.+.+.|-|++|. +.. . .+.. |. ...+ |. .+.
T Consensus 185 ~eel~~~~~~~~~~~~~~~vlvEe~I~-G~~E~~v~v~~d~~g~~v~~~~~e~~d-p~----~v~~--g~----s~~--- 249 (1073)
T 1a9x_A 185 REEFEEICARGLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIVCSIENFD-AM----GIHT--GD----SIT--- 249 (1073)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEEEEEEESS-CT----TSCG--GG----SCE---
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEccC-CCeEEEEEEEEeCCCCEEEEEEEeccc-CC----cccc--Cc----EEE---
Confidence 9988653 24799999996 2379999999753 322 1 2211 11 0000 00 000
Q ss_pred cccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 255 ASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 255 ~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~--lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. .++ .+++. ..+.+.++|.++.++||+. .+++|++++..+| ++||||||.-++
T Consensus 250 -~-~Pa~~l~~~-----~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 250 -V-APAQTLTDK-----EYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp -E-ESCCSCCHH-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred -E-ecCCCCCHH-----HHHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 0 011 11110 1346899999999999997 8899999975344 799999994443
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=133.60 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=134.7
Q ss_pred CCccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCh
Q 019076 78 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 155 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~ 155 (346)
...|+|+. ..+.. ...+.+..++ .|++++ .++++++.+.||..+.+.|++ ++||+|++..+. +.++.
T Consensus 82 ~~id~vv~--g~E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~-~~~ea 150 (442)
T 3lp8_A 82 EKIELVVI--GPETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMR-------YGIPTAKYGYFV-DTNSA 150 (442)
T ss_dssp TTCCEEEE--CSHHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHH-------HTCCBCCEEEES-SHHHH
T ss_pred hCCCEEEE--CCcHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHH-------CCCCCCCEEEEC-CHHHH
Confidence 34677775 22221 2234444444 578887 899999999999999999987 489999999885 32223
Q ss_pred hhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 019076 156 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GE 220 (346)
Q Consensus 156 ~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~ 220 (346)
.+. ...++||+|+||.. |+ .|.++.++.+.+++.+. ..++++||||+ |..+.|.++ |+
T Consensus 151 ~~~--~~~~g~PvVvKp~~--~~-gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 151 YKF--IDKHKLPLVVKADG--LA-QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGS 223 (442)
T ss_dssp HHH--HHHSCSSEEEEESS--CC-TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESS
T ss_pred HHH--HHHcCCcEEEeECC--CC-CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCC
Confidence 222 23589999999985 33 67899999999887532 25899999996 899988887 44
Q ss_pred EEEE--EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCC--ChHHHHHH----HHHHHHHhCCcE--
Q 019076 221 TIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERL----ARELRHRLGLRL-- 290 (346)
Q Consensus 221 ~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p--~~~~~~~l----A~~l~~~lGl~l-- 290 (346)
.+.. ..+.- .....++. + .+ . .+ .+...|. ..++ ..+.+.+. +.++.+++|+.+
T Consensus 224 ~~~~~~~~~~~-~~~~~~~~----g-~~--~---gg----~g~~~P~-~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G 287 (442)
T 3lp8_A 224 NPVILGVAQDY-KTIGDNNK----G-PN--T---GG----MGSYSKP-NIITQEMEHIIIQKIIYPTIKAMFNMNIQFRG 287 (442)
T ss_dssp CEEEEEEEEEC-CEEEGGGE----E-EE--C---SC----SEEEECT-TSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred eEEEeEEeEee-eecccCCC----C-CC--C---CC----cEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 4432 22211 11000000 0 00 0 00 0011111 0011 12234444 677778999854
Q ss_pred -eEEEEEEecCcCCeEEEEeccCCCCCCCCccc----HHHHHHHHHHHHHhh
Q 019076 291 -FNIDMIREHGMRDVFYVIDINYFPGYGKMPDY----EHIFTDFLLSLEQSK 337 (346)
Q Consensus 291 -fGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~----~~~l~~~l~~~i~~~ 337 (346)
+++|++.+.+ +++|||+|.-||-...+.. ..-|.+.+.+.+..+
T Consensus 288 ~~~ve~~~~~~---g~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 288 LLFAGIIIKKN---EPKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp EEEEEEEEETT---EEEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred EEEEEEEEeCC---CeEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC
Confidence 4599999752 4999999999993221111 112455555555543
|
| >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=134.50 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=124.0
Q ss_pred CccEEEEcccchhhH-HHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~~-~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+.- .+... ..+.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++..+. +.+++.
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~ 130 (424)
T 2yw2_A 62 GVDFTIVG--PEAPLVEGIVDEFEK-RGLKIFGPNKEAAKLEGSKAFAKTFMKK-------YGIPTARYEVFT-DFEKAK 130 (424)
T ss_dssp TCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHHH
T ss_pred CCCEEEEC--CchHHHHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHHH
Confidence 46777652 22221 123333333 578887 889999999999999999997 589999998874 222232
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GET 221 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~~ 221 (346)
+. ...++||+|+||..+ + .|.+|.++.+.+++.+. ..++++||||+ |..+.|.++ |+.
T Consensus 131 ~~--~~~~~~PvvvKp~~g--~-gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~ 203 (424)
T 2yw2_A 131 EY--VEKVGAPIVVKADGL--A-AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDR 203 (424)
T ss_dssp HH--HHHHCSSEEEEESSC--C-TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTE
T ss_pred HH--HHHcCCcEEEEeCCC--C-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCE
Confidence 22 234789999999863 3 57899999999887542 25899999996 889988777 554
Q ss_pred EEEE--EeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCC--hHHH-HHHHHHHHHHh---CCc---E
Q 019076 222 IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---L 290 (346)
Q Consensus 222 v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~l~~~l---Gl~---l 290 (346)
+... .|...... +.. .+ .+... .+...|. ..+++ .+.+ ++++.++.++| |++ +
T Consensus 204 ~~~~~~~~~~~~~~---~~~--~~---~~~g~-------~~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~ 267 (424)
T 2yw2_A 204 YVPLPTSQDHKRLL---DED--KG---PNTGG-------MGAYSPT-PVINEEVEKRIREEIVERVIKGLKEEGIYYRGF 267 (424)
T ss_dssp EEECCCBEECCEEE---TTT--EE---EECSC-------SEEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEE
T ss_pred EEeecceeeccccc---cCC--CC---CCCCC-------CeeECCC-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeE
Confidence 4432 12110000 000 00 00000 0001110 00111 1223 46777777776 554 4
Q ss_pred eEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 291 FNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 291 fGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
+++|++.+. + ++||+|||.-||-.+
T Consensus 268 ~~ve~~~~~-~--g~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 268 LYAGLMITK-E--GPKVLEFNVRLGDPE 292 (424)
T ss_dssp EEEEEEEET-T--EEEEEEEESSCCTTT
T ss_pred EEEEEEEeC-C--CcEEEEEecCCCCcH
Confidence 569999975 2 499999999999443
|
| >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=132.97 Aligned_cols=181 Identities=9% Similarity=0.069 Sum_probs=117.7
Q ss_pred eeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEE
Q 019076 107 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 186 (346)
Q Consensus 107 ~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~l 186 (346)
++-.++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+ ....++||+|+||..+. .|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~e~~~--~~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKK-------YGIRTARFEVAE-TPEELRE--KIKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEES-SHHHHHH--HHTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEEC-CHHHHHH--HHHhcCCCEEEEeCCCC---CCCCEEE
Confidence 556899999999999999999997 589999998874 2222222 22468999999998633 5789999
Q ss_pred EeChhhhhcc-----------C--CCeEEEecccCCCeEEEEEEE--CCEEEEEEe-ecCCCcccchhhcccceeecccc
Q 019076 187 AYDRFSLSEL-----------E--PPMLLQEFVNHGGILFKIYII--GETIKVVRR-FSLPNVSKRELAKVVSVFRFPRV 250 (346)
Q Consensus 187 v~~~~~L~~l-----------~--~p~v~QEfI~h~G~~~KV~Vv--G~~v~~~~R-~Slp~~~~~~~~~~~g~~~~~~v 250 (346)
+.+.++|.+. . .++++||||+ |+.+.|.++ |+.+..+.. ...... ..+....+..
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~-------~~~~~~~~~g 230 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPFVRDYKRL-------MDGDRGPNTG 230 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCCCEECCEE-------ETTTEEEECS
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeeeeEeeeec-------cCCCCCCCCC
Confidence 9999887541 1 3899999996 899999888 443332210 000000 0000000000
Q ss_pred cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-----CC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 251 SSAAASADDADLDPGIAELPPRPLLERLARELRHRL-----GL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 251 s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-----Gl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.. +.. .+..+++. ..+.++++|.++.++| +. .++++|++++. + .+||+|||.-||-.+.
T Consensus 231 ~~-~~~-~P~~l~~~-----~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 231 GM-GSW-GPVEIPSD-----TIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-G--DPYILEYNVRLGDPET 295 (412)
T ss_dssp CS-EEE-ECCCCCHH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-T--EEEEEEEESSCCTTHH
T ss_pred Cc-eEE-ECCCCCHH-----HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-C--CcEEEEEecCCCCCcc
Confidence 00 000 01111110 1345789999999999 44 56679999975 2 3999999999986643
|
| >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-13 Score=131.11 Aligned_cols=184 Identities=13% Similarity=0.193 Sum_probs=120.7
Q ss_pred HHHHHHhCCCeeeeC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEec
Q 019076 96 IEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 96 l~~y~~~~p~v~VID-p~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP 172 (346)
+.+..+ ..|++++. ++++++.+.||..+.+.|++ ++||+|++. .+. +.+++.+. ...++||+|+||
T Consensus 90 ~~~~~~-~~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp 158 (451)
T 2vpq_A 90 FAELCE-ACQLKFIGPSYQSIQKMGIKDVAKAEMIK-------ANVPVVPGSDGLMK-DVSEAKKI--AKKIGYPVIIKA 158 (451)
T ss_dssp HHHHHH-TTTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSCBS-CHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHH-HcCCeEECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccCcC-CHHHHHHH--HHhcCCcEEEEE
Confidence 344443 46788765 58999999999999999997 589998865 443 22222222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEee-cCCCcc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRF-SLPNVS 234 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~~-~~R~-Slp~~~ 234 (346)
.. |+ +|.+|.++.+.+++... +.++++||||+ +++.+.|.++++ ++.. ..|. +...
T Consensus 159 ~~--g~-gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~~-- 232 (451)
T 2vpq_A 159 TA--GG-GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQR-- 232 (451)
T ss_dssp TT--CC-TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEEE--
T ss_pred CC--CC-CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchhc--
Confidence 86 33 57899999999887542 46899999996 237888888753 3433 2221 1100
Q ss_pred cchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccC
Q 019076 235 KRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINY 312 (346)
Q Consensus 235 ~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~ 312 (346)
.....+. . .+.. +++. ..+.+.++|.++.++||+.- +++|++.+..+| ++||+|||.
T Consensus 233 -----~~~~~~~---------~-~P~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~ 291 (451)
T 2vpq_A 233 -----RMQKLVE---------E-APSPILDDE-----TRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNT 291 (451)
T ss_dssp -----TTEEEEE---------E-ESCTTCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEEC
T ss_pred -----cccceEE---------E-cCCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeC
Confidence 0000000 0 0111 1110 13468899999999999985 459999972234 699999999
Q ss_pred CCCCC
Q 019076 313 FPGYG 317 (346)
Q Consensus 313 fPg~~ 317 (346)
-|+-.
T Consensus 292 R~~~~ 296 (451)
T 2vpq_A 292 RIQVE 296 (451)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 98754
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-13 Score=130.83 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=123.9
Q ss_pred CccEEEEcccchhh-HHHHHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChh
Q 019076 79 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 156 (346)
Q Consensus 79 ~fDvilhK~t~~~~-~~~l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~ 156 (346)
.+|+|+.- .+.. ...+.+..++ .|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~ 130 (422)
T 2xcl_A 62 QVGLTIVG--PEVPLIEGLVDEFEK-AGLHVFGPSKAAAIIEGSKQFAKDLMKK-------YDIPTAEYETFT-SFDEAK 130 (422)
T ss_dssp TEEEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEES-CHHHHH
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHH-CCCCEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEEC-CHHHHH
Confidence 45666652 2222 1223333333 467777 889999999999999999997 589999998884 222232
Q ss_pred hHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCE
Q 019076 157 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GET 221 (346)
Q Consensus 157 ~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vv--G~~ 221 (346)
+. ...++||+|+||.. |+ .|.++.++.+.+++... ..++++||||+ |..+.|.++ |+.
T Consensus 131 ~~--~~~~~~P~vvKp~~--~~-~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~ 203 (422)
T 2xcl_A 131 AY--VQEKGAPIVIKADG--LA-AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEK 203 (422)
T ss_dssp HH--HHHHCSSEEEEESS--CG-GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTE
T ss_pred HH--HHhcCCCEEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCE
Confidence 22 23478999999986 33 67899999999887542 26899999997 899998887 454
Q ss_pred EEEE--EeecCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHH-HHHHHHHHHHh---CCc---Ee
Q 019076 222 IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLL-ERLARELRHRL---GLR---LF 291 (346)
Q Consensus 222 v~~~--~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~-~~lA~~l~~~l---Gl~---lf 291 (346)
+..+ .|..-... +.. .+. ++ ... +.. .+.. +++. ..+.+ ++++.++.++| |+. ++
T Consensus 204 ~~~~~~~~~~~~~~---~~~--~~~-~~--g~~-~~~-~p~~~l~~~-----~~~~~~~~~~~~~~~~l~~~g~~~~G~~ 268 (422)
T 2xcl_A 204 VYPMVIAQDHKRAF---DGD--KGP-NT--GGM-GAY-SPVPQISEE-----TVRHAVETIVKPAAKAMVQEGRSFTGVL 268 (422)
T ss_dssp EEECCCBEEEEEEE---GGG--EEE-EE--EEE-EEE-ESCTTSCHH-----HHHHHHHHTHHHHHHHHHHTTCCCEEEE
T ss_pred EEecceeeeeehhc---CCC--CCC-CC--CCC-eeE-ccCCCCCHH-----HHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3321 11100000 000 000 00 000 000 0111 1110 01223 34777777776 554 46
Q ss_pred EEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 292 NIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 292 GvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
++|++.+. + +++|+|||.-||-.+
T Consensus 269 ~vd~~~~~-~--g~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 269 YAGLMLTE-N--GSKVIEFNARFGDPE 292 (422)
T ss_dssp EEEEEEET-T--EEEEEEEESSCCTTT
T ss_pred EeeEEEeC-C--CcEEEEEecCCCCcH
Confidence 68999975 2 499999999999554
|
| >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-13 Score=145.64 Aligned_cols=216 Identities=18% Similarity=0.290 Sum_probs=131.7
Q ss_pred cCCcEEEEecCCCCCC--CC----------------------CCccEEEEcccchhhHHHHHHHHHhCCCeeee-ChHHH
Q 019076 60 NKGISFVAIDQNRPLS--DQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDA 114 (346)
Q Consensus 60 ~~Gi~~v~id~~~~l~--~q----------------------~~fDvilhK~t~~~~~~~l~~y~~~~p~v~VI-Dp~~a 114 (346)
+.|++++.+|.+.... .. ...|.|+.-...... ..+.+.+++ .|++++ .++++
T Consensus 591 ~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~-~Gi~i~G~~~~a 668 (1073)
T 1a9x_A 591 EDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEA-AGVPVIGTSPDA 668 (1073)
T ss_dssp HTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHH-TTCCBCSSCHHH
T ss_pred hcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHH-CCCCeeCCCHHH
Confidence 8999999999764221 00 113444432222111 123344443 578777 88999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 194 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~ 194 (346)
+..+.||..+.+.|.+ .+|++|++..+.+ .+++.+. ...++||+|+||..+. +|.+|.++.++++|.
T Consensus 669 i~~~~DK~~~~~ll~~-------~GIp~P~~~~~~s-~eea~~~--~~~ig~PvvVKP~~~~---gG~Gv~iv~~~~el~ 735 (1073)
T 1a9x_A 669 IDRAEDRERFQHAVER-------LKLKQPANATVTA-IEMAVEK--AKEIGYPLVVRASYVL---GGRAMEIVYDEADLR 735 (1073)
T ss_dssp HHHHHSHHHHHHHHHH-------HTCCCCCEEECCS-HHHHHHH--HHHHCSSEEEEC----------CEEEECSHHHHH
T ss_pred HHHhhCHHHHHHHHHH-------cCcCCCCceEECC-HHHHHHH--HHHcCCCEEEEECCCC---CCCCeEEECCHHHHH
Confidence 9999999999999987 4899999998742 2222221 2357999999998733 578999999999886
Q ss_pred cc---------CCCeEEEecccCCCe-EEEEEEECCE--EEE--EEeecCC-CcccchhhcccceeecccccccccccCC
Q 019076 195 EL---------EPPMLLQEFVNHGGI-LFKIYIIGET--IKV--VRRFSLP-NVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 195 ~l---------~~p~v~QEfI~h~G~-~~KV~VvG~~--v~~--~~R~Slp-~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
.. ..|+++||||+ |. .+-|-++++. +.+ +.+.-.+ ++..++ ....++ .
T Consensus 736 ~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~~P----------~ 798 (1073)
T 1a9x_A 736 RYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACSLP----------A 798 (1073)
T ss_dssp HHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEEES----------C
T ss_pred HHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEEec----------C
Confidence 53 35899999996 44 7877777443 332 2221111 111000 000000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
..+++. ..+.++++|.++.++||+ .++++|+++++ +++||||||.-||
T Consensus 799 ~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~---~~~~viEvNpR~~ 847 (1073)
T 1a9x_A 799 YTLSQE-----IQDVMRQQVQKLAFELQVRGLMNVQFAVKN---NEVYLIEVNPRAA 847 (1073)
T ss_dssp SSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECS---SCEEEEEEECSCC
T ss_pred CCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEEC---CeEEEEEEECCCc
Confidence 011110 135689999999999999 78899999963 3699999999998
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=131.88 Aligned_cols=190 Identities=11% Similarity=0.004 Sum_probs=118.2
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCc
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLV 174 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~ 174 (346)
+.+..++ .|++++ .++++++.+.||..+.+.|.+ ++||+|++..+. +.++..+. ...++||+|+||..
T Consensus 83 ~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIptp~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~ 151 (431)
T 3mjf_A 83 VVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLAR-------HNIPSAEYQNFT-DVEAALAY--VRQKGAPIVIKADG 151 (431)
T ss_dssp HHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCSBCCEEEES-CHHHHHHH--HHHHCSSEEEEESS
T ss_pred HHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEeeC-CHHHHHHH--HHHcCCeEEEEECC
Confidence 4444444 478887 899999999999999999997 589999999885 33323232 23578999999985
Q ss_pred CCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEEEeecCCCcccchhh
Q 019076 175 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG--ETIKVVRRFSLPNVSKRELA 239 (346)
Q Consensus 175 a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~~R~Slp~~~~~~~~ 239 (346)
|+ .|.++.++.+.+++.+. ..++++||||+ |..+.|.++. +++..... .. ..+
T Consensus 152 --~~-gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~-----~~--~~~ 219 (431)
T 3mjf_A 152 --LA-AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLPMAT-----SQ--DHK 219 (431)
T ss_dssp --SC-TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEECCC-----BE--ECC
T ss_pred --CC-CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEEEe-----eE--ece
Confidence 32 67899999999887542 25899999996 8999998884 34433110 00 000
Q ss_pred cccceeecccccccccccCCCCCCCCCCCCCC--hHHHHHH----HHHHHHHhCCcEe---EEEEEEecCcCCeEEEEec
Q 019076 240 KVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERL----ARELRHRLGLRLF---NIDMIREHGMRDVFYVIDI 310 (346)
Q Consensus 240 ~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~--~~~~~~l----A~~l~~~lGl~lf---GvDvi~~~~~g~~~~ViDV 310 (346)
..+++....+.+ ..+...|.. .++. .+.+.+. +.++.+++|+.+. ++|++.+. +| +++|||+
T Consensus 220 ---~~~~~~~g~~~g---g~g~~~P~~-~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEi 290 (431)
T 3mjf_A 220 ---RVGDGDTGPNTG---GMGAYSPAP-VVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEF 290 (431)
T ss_dssp ---EEETTTEEEECS---CSEEEESCT-TSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEE
T ss_pred ---ecccCCCCCCCC---CceEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEE
Confidence 001110000000 000111110 0110 1223332 4566678898654 49999975 33 5999999
Q ss_pred cCCCCCC
Q 019076 311 NYFPGYG 317 (346)
Q Consensus 311 N~fPg~~ 317 (346)
|.-||..
T Consensus 291 N~R~G~~ 297 (431)
T 3mjf_A 291 NCRFGDP 297 (431)
T ss_dssp CGGGSTT
T ss_pred ecCCCCc
Confidence 9999843
|
| >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=131.88 Aligned_cols=177 Identities=12% Similarity=0.172 Sum_probs=118.5
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCC
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 180 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~ 180 (346)
.|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++.+. ...++||+|+||..+. .
T Consensus 97 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~---g 163 (451)
T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKK-------AGVPVVPGSDGVLK-SLEEAKAL--AREIGYPVLLKATAGG---G 163 (451)
T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSSCC-CHHHHHHH--HHHHCSSEEEEECSSS---S
T ss_pred CCCeEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---C
Confidence 577766 779999999999999999997 589999986 443 22222222 2347899999998633 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCcccchhhcccc
Q 019076 181 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSKRELAKVVS 243 (346)
Q Consensus 181 sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~~~~~~~~g 243 (346)
|.+|.++.+.+++... ..++++||||+ +++.+.|.++++ ++. +..|.. + +. .....
T Consensus 164 g~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~----~~~~~ 236 (451)
T 1ulz_A 164 GRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQ----RRNQK 236 (451)
T ss_dssp CCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----ETTEE
T ss_pred CccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-cc----ccccc
Confidence 7899999999887542 46899999996 348899988864 343 332211 0 00 00000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 244 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 244 ~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
.+. . .+. .+++ ...+.+.++|.++.++||+. ++++|++++. +| ++||+|||.-|+-.
T Consensus 237 ~~~---------~-~P~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 237 LVE---------I-APSLILTP-----EKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp EEE---------E-ESCSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred cee---------E-CCcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000 0 011 1111 01346889999999999998 4569999974 33 69999999988743
|
| >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=131.08 Aligned_cols=183 Identities=11% Similarity=0.163 Sum_probs=121.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEec
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP 172 (346)
+.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++.+. ...++||+|+||
T Consensus 96 ~~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp 164 (461)
T 2dzd_A 96 FAKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVN-------AGIPVIPGSDGPVD-GLEDVVAF--AEAHGYPIIIKA 164 (461)
T ss_dssp HHHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHH-------TTCCBCCBCSSCCS-SHHHHHHH--HHHHCSCEEEEE
T ss_pred HHHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCCcccCcC-CHHHHHHH--HHhcCCcEEEEe
Confidence 3344444 467765 779999999999999999987 589999986 342 22222222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCccc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSK 235 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~ 235 (346)
..+. +|.+|.++.+.++|... ..++++||||+ +++.+.|.++++ ++. ...|.. + .
T Consensus 165 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~-- 236 (461)
T 2dzd_A 165 ALGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-S-V-- 236 (461)
T ss_dssp STTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-E-E--
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-c-c--
Confidence 8733 57899999999887542 46899999996 347888888864 233 333311 0 0
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~f 313 (346)
......... .. +. .+++ ...+.+.++|.++.+++|+..++ +|++.+. | ++||+|||.-
T Consensus 237 --~~~~~~~~~---------~~-P~~~l~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R 296 (461)
T 2dzd_A 237 --QRRHQKVVE---------VA-PSVSLSD-----ELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPR 296 (461)
T ss_dssp --EETTEEEEE---------EE-SCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESS
T ss_pred --cccccceEE---------EC-CcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECC
Confidence 000000000 00 11 1111 01356889999999999998766 9999975 3 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
||..
T Consensus 297 ~~~~ 300 (461)
T 2dzd_A 297 IQVE 300 (461)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 8743
|
| >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=135.32 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=123.3
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--cc---------------------
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK--------------------- 150 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~--i--~~--------------------- 150 (346)
.+..++ .|++++ .++++++.+.||..+.+.+++ .|||+|++.. + ..
T Consensus 157 a~~le~-~Gi~~iGp~~~ai~~~~DK~~ak~ll~~-------aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (587)
T 3jrx_A 157 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 228 (587)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTT
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCeecccccccccccccccccccccchhhcccc
Confidence 344443 578888 899999999999999999987 5889998764 0 00
Q ss_pred CCCChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC
Q 019076 151 DSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 151 ~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
...+..+.. ....++||+|+||..++ +|.+|.++.++++|.+. +.++++|+||+ +++.+-|-|++|
T Consensus 229 ~v~s~eea~~~a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D 304 (587)
T 3jrx_A 229 CVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILAD 304 (587)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEc
Confidence 011111111 22458999999998633 57899999999987653 46899999996 249999999986
Q ss_pred E---E-EEEEee-cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEE
Q 019076 221 T---I-KVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNI 293 (346)
Q Consensus 221 ~---v-~~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGv 293 (346)
. + ....|. |... .+..... .+ ++. +++. ..+.+.++|.++++++|.. .++|
T Consensus 305 ~~G~vv~l~~rd~siqr--------------r~qk~ie--~a-Pa~~l~~~-----~~~~i~~~A~~~a~alGy~G~~~V 362 (587)
T 3jrx_A 305 QYGNAVSLFGRDCSIQR--------------RHQKIVE--EA-PATIAPLA-----IFEFMEQCAIRLAKTVGYVSAGTV 362 (587)
T ss_dssp SSSCEEEEEEEEEEEES--------------SSCEEEE--EE-SCCSSCHH-----HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEeeeeccccc--------------cccceeE--ec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeEE
Confidence 4 3 233332 1110 0110000 00 111 1111 1356889999999999996 4559
Q ss_pred EEEEecCcCCeEEEEeccCCCCCC
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
|++.+. +| ++|++|||.-|+-.
T Consensus 363 Efl~d~-dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 363 EYLYSQ-DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp EEEECS-SS-CEEEEEEESSCCTT
T ss_pred EEEEeC-CC-CEEEEEEeCCCCCc
Confidence 999974 34 69999999999853
|
| >2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=129.64 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=114.3
Q ss_pred CCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCcCCCCCCc
Q 019076 104 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~a~GS~~s 181 (346)
.|++++ .++++++.+.||..+.+.|++ .+||+|++..+. +.+++.+. ...++|| +|+||..+. +|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDR-------HGIPTAQWKAFT-KPEEACSF--ILSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHH-------TTCCBCCEEEES-SHHHHHHH--HHHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEEC-CHHHHHHH--HHhCCCCeEEEEeCCCC---CC
Confidence 478887 889999999999999999987 589999999875 22223222 2358999 999998633 57
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCcccchhhcccce
Q 019076 182 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSV 244 (346)
Q Consensus 182 h~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG--~~v~~~--~R~Slp~~~~~~~~~~~g~ 244 (346)
.+|.++.+.+++.+. ..++++||||+ |..+.|.+++ +.+..+ .|..-... +.. .+.
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~---~~~--~~~ 250 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLL---EGD--GGP 250 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEE---TTT--EEE
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccccc---CCC--CCC
Confidence 899999999887542 25899999996 8999998883 333321 11100000 000 000
Q ss_pred eecccccccccccCCCC-CCCCCCCCCChHHHH-HHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 245 FRFPRVSSAAASADDAD-LDPGIAELPPRPLLE-RLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 245 ~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~-~lA~~l~~~l---Gl---~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
++.. . +.. .+.. +++. ..+.+. ++|.++.++| |+ .++++|++++. + ++||+|||.-||-
T Consensus 251 -~~g~--~-~~~-~P~~~l~~~-----~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~~~ 317 (452)
T 2qk4_A 251 -NTGG--M-GAY-CPAPQVSND-----LLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-N--GPKVLEFNCRFGD 317 (452)
T ss_dssp -EEEE--E-EEE-ESCTTCCHH-----HHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-T--EEEEEEEESSCCT
T ss_pred -CCCC--c-eee-ccCccCCHH-----HHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CcEEEEEeccCCC
Confidence 0000 0 000 0111 1110 022343 6777888776 44 46789999975 2 4999999999995
Q ss_pred CC
Q 019076 317 GK 318 (346)
Q Consensus 317 ~g 318 (346)
.+
T Consensus 318 ~~ 319 (452)
T 2qk4_A 318 PE 319 (452)
T ss_dssp TT
T ss_pred cH
Confidence 43
|
| >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=132.79 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=116.9
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--cc---------------------
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK--------------------- 150 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~--i--~~--------------------- 150 (346)
.+..++ .|++++ .++++++.+.||..+.+.+.+ .|||+|++.. + ..
T Consensus 141 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll~~-------~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (540)
T 3glk_A 141 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 212 (540)
T ss_dssp HHHHHH-TTCEESSCCHHHHC---CHHHHHHHHHH-------TTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHT
T ss_pred HHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCccccccccccccccccccccccccccccccc
Confidence 334444 578888 899999999999999999987 5899998764 0 00
Q ss_pred CCCChhhHH-HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC
Q 019076 151 DSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 151 ~~~~~~~~l-~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
...+..+.. ....++||+|+||..++ +|.+|.++.++++|.+. +.++++||||+ +++.+-|-|++|
T Consensus 213 ~v~s~~ea~~~a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d 288 (540)
T 3glk_A 213 CVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILAD 288 (540)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEEC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEc
Confidence 011111111 22458999999998633 57899999999987653 46899999995 238999999976
Q ss_pred E---EE-EEEee-cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEE
Q 019076 221 T---IK-VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNI 293 (346)
Q Consensus 221 ~---v~-~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGv 293 (346)
. +. ...|. +... .+..... .+ ++. +++ ...+.+.++|.++++++|+. .++|
T Consensus 289 ~~G~vv~l~~rd~s~qr--------------~~~k~ie--~~-Pa~~l~~-----~~~~~l~~~a~~~~~alG~~G~~~V 346 (540)
T 3glk_A 289 QYGNAVSLFGRDCSIQR--------------RHQKIVE--EA-PATIAPL-----AIFEFMEQCAIRLAKTVGYVSAGTV 346 (540)
T ss_dssp TTSCEEEEEEEEEEEC-----------------CCSEE--EE-SCTTSCH-----HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEeceeeeeee--------------cccceEE--ec-CCCCCCH-----HHHHHHHHHHHHHHHHcCCccceEE
Confidence 3 32 33332 2111 0110000 00 111 111 11356889999999999995 5569
Q ss_pred EEEEecCcCCeEEEEeccCCCCCC
Q 019076 294 DMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 294 Dvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
|++.+. +| ++|++|||.-|+-.
T Consensus 347 Ef~~d~-dg-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 347 EYLYSQ-DG-SFHFLELNPRLQVE 368 (540)
T ss_dssp EEEEET-TS-CEEEEEEECSCCTT
T ss_pred EEEEcC-CC-CEEEEEEECCCCCc
Confidence 999975 34 69999999999854
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=127.05 Aligned_cols=182 Identities=11% Similarity=0.181 Sum_probs=120.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCh-hhHHHhhCCCCcEEEec
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKP 172 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~-~~~l~~~~l~fPvVvKP 172 (346)
.+..++ .|++++ .++++++.+.||..+.+.|.+ .+||+|++. .+. +.+++ .+. ...++||+|+||
T Consensus 92 ~~~~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~-~~~~~~~~~--~~~~g~PvvvKp 160 (449)
T 2w70_A 92 AEQVER-SGFIFIGPKAETIRLMGDKVSAIAAMKK-------AGVPCVPGSDGPLG-DDMDKNRAI--AKRIGYPVIIKA 160 (449)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------HTCCBCSBCSSCCC-SCHHHHHHH--HHHHCSSEEEEE
T ss_pred HHHHHH-cCCceECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccccC-CHHHHHHHH--HHHhCCcEEEEE
Confidence 334443 467765 579999999999999999997 489999986 443 33322 222 234789999999
Q ss_pred CcCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCccc
Q 019076 173 LVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSK 235 (346)
Q Consensus 173 ~~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~Slp~~~~ 235 (346)
..+. +|.+|.++.+.+++... +.++++||||+ +++.+.|.++++ ++. ...|.. . ..
T Consensus 161 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~~- 233 (449)
T 2w70_A 161 SGGG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-MQ- 233 (449)
T ss_dssp TTCC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE-
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-cc-
Confidence 8733 57899999999887542 46899999996 348899888853 343 333311 0 00
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
........ . .+. .+++. ..+.+.++|.++.++||+. ++++|++.+. | ++||+|||.-
T Consensus 234 ---~~~~~~~~---------~-~p~~~l~~~-----~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R 292 (449)
T 2w70_A 234 ---RRHQKVVE---------E-APAPGITPE-----LRRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTR 292 (449)
T ss_dssp ---ETTEEEEE---------E-ESCTTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECS
T ss_pred ---cCCcceee---------e-CCcccCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECC
Confidence 00000000 0 011 12110 1356889999999999986 4669999975 3 7999999998
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
|+-.
T Consensus 293 ~~~~ 296 (449)
T 2w70_A 293 IQVE 296 (449)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8743
|
| >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=128.54 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=116.0
Q ss_pred eeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-----ccC-----------------CCChhhHH-Hh
Q 019076 106 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQV-FE 161 (346)
Q Consensus 106 v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-----~~~-----------------~~~~~~~l-~~ 161 (346)
+.++ .++++++.+.||..+.+.+++ .+||+|++..+ ..+ ..+..+.. ..
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQS-------AKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5554 557799999999999999987 58899987543 000 01222211 12
Q ss_pred hCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEee
Q 019076 162 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRF 228 (346)
Q Consensus 162 ~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~---~v~-~~~R~ 228 (346)
..++||+|+||..+. +|.+|.++.++++|... ..++++||||+ +|+.+.|.++++ ++. ...|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 357899999998633 57899999999887642 46899999997 468899988865 333 22331
Q ss_pred -cCCCcccchhhcccceeecccccccccccCCCC-CCCCCCCCCChHHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeE
Q 019076 229 -SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVF 305 (346)
Q Consensus 229 -Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~ 305 (346)
+..+. ...... . . +.. +++ ...+.+.++|.++.++||+ +.+++|++++..+| ++
T Consensus 307 ~~~~~~-------~~k~~~---~------~-P~~~l~~-----~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQRR-------HQKIIE---E------A-PVTIAKA-----ETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEET-------TEEEEE---E------E-SCCSSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEee-------ccceee---e------C-CCcCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 11100 000000 0 0 011 111 0135688999999999999 56679999962233 69
Q ss_pred EEEeccCCCCCC
Q 019076 306 YVIDINYFPGYG 317 (346)
Q Consensus 306 ~ViDVN~fPg~~ 317 (346)
||+|||.-+|-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999988754
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-11 Score=133.14 Aligned_cols=181 Identities=11% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ ++||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 95 a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~-------aGIPvpp~~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 95 ARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIK-------ADLPVIPGTDGPIK-SYELAKE--FAEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSCBC-SSSTTTT--TGGGTCSSEEEECC
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCccccCCC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 334444 477777 889999999999999999987 589999987 443 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~ 235 (346)
.++ +|.+|.++.++++|... +.++++||||+ +.+.+-|-|+++. +....|. |...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec---
Confidence 633 57899999999887542 35799999996 2388888888763 3333332 1110
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~f 313 (346)
. +... ...+ +. .+++. ..+.+.++|.++.+++|+.-+| +|++.+.+ ++|+||||.-
T Consensus 237 -----~------~~k~--~e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR 294 (1150)
T 3hbl_A 237 -----R------HQKV--VEVA-PSVGLSPT-----LRQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPR 294 (1150)
T ss_dssp -----S------SCEE--EEES-SCSSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECS
T ss_pred -----c------Ccee--EEec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCC
Confidence 0 0000 0000 11 11111 1356889999999999987655 99999753 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
++-.
T Consensus 295 ~~g~ 298 (1150)
T 3hbl_A 295 VQVE 298 (1150)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9843
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=133.35 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=85.7
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ -|++++ .++++++.+.||..+.+.+.+ .+||+|++. .+. +.+++.+ ....++||+|+||.
T Consensus 92 a~~le~-~Gi~~iGp~~~ai~~~~dK~~~k~~l~~-------~GVPvpp~~~~~~~-s~~e~~~--~a~~igyPvVvKp~ 160 (681)
T 3n6r_A 92 AEALEA-EGVIFVGPPKGAIEAMGDKITSKKIAQE-------ANVSTVPGYMGLIE-DADEAVK--ISNQIGYPVMIKAS 160 (681)
T ss_dssp HHHHHT-TTCCCSSSCHHHHHHTTSHHHHHHHHHT-------TTCCCCCC------------------------------
T ss_pred HHHHHH-cCCceECCCHHHHHHhCCHHHHHHHHHH-------cCcCcCCccccCcC-CHHHHHH--HHHhcCCcEEEEEC
Confidence 344444 478877 789999999999999999986 589999975 333 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R~-Slp~~~~ 235 (346)
. |+ +|.+|.++.++++|... +.++++||||+ +++.+-|.|++|. +....|. |...
T Consensus 161 ~--gg-ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~-g~rei~V~v~~d~~G~vv~l~~rd~s~qr--- 233 (681)
T 3n6r_A 161 A--GG-GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVT-QPRHIEIQVLCDSHGNGIYLGERECSIQR--- 233 (681)
T ss_dssp ---------------------------------------------CC-SCEEEEEEEECCSSSCCEEEEEEECCCEE---
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccC-CCcEEEEEEEEeCCCCEEEEeeeecceec---
Confidence 6 33 57899999999887653 24799999996 2489999999764 2333332 2210
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
.++... ..+ +. .+++. ..+.+.++|.++.+++|+. .+++|++.+. +| ++|++|||.-
T Consensus 234 -----------~~~k~~--e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR 292 (681)
T 3n6r_A 234 -----------RNQKVV--EEA-PSPFLDEA-----TRRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTR 292 (681)
T ss_dssp -----------TTEECE--EEE-SCSSCCHH-----HHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECS
T ss_pred -----------cCccEE--Eec-CCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccc
Confidence 000000 000 11 12111 1356789999999999996 4459999985 34 6999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
|+-.
T Consensus 293 ~~~~ 296 (681)
T 3n6r_A 293 LQVE 296 (681)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9744
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=133.21 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=82.8
Q ss_pred HHHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 96 IEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 96 l~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~-~~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
+.+..++ .|++++ .++++++.+.||..+.+.+.+ ++||+|+. .++. +.+++.+ ....++||+|+||.
T Consensus 120 ~a~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~-------aGIPvpp~~~~v~-s~eea~~--~a~~iGyPvVVKP~ 188 (1236)
T 3va7_A 120 FSDRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAER-------AKVPLVPGSGLIK-DAKEAKE--VAKKLEYPVMVKST 188 (1236)
T ss_dssp HHHHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHH-------TTCCCCC------------------------------
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEecC-CHHHHHH--HHHHcCCCEEEEeC
Confidence 3344443 577776 888999999999999999987 58999884 4443 3333323 23468999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~~-~~R~-Slp~~~~ 235 (346)
. |+ +|.+|.++.++++|.+. +.++++||||+ +++.+.|.|++|. +.. ..|. |...
T Consensus 189 ~--Gg-GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~qr--- 261 (1236)
T 3va7_A 189 A--GG-GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQR--- 261 (1236)
T ss_dssp ------------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEEE---
T ss_pred C--CC-CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeeee---
Confidence 6 33 57899999999887642 24699999996 2489999988753 322 2221 1100
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~f 313 (346)
.+... ...+ +. .+++. ..+.+.++|.++.+++|+. .++||++.+..++ ++|+||||.-
T Consensus 262 -----------~~~k~--~e~~-Pa~~l~~~-----~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpR 321 (1236)
T 3va7_A 262 -----------RNQKV--IEET-PAPNLPEA-----TRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNAR 321 (1236)
T ss_dssp -----------TTEEE--EEEE-SCSSCCHH-----HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred -----------cCcce--EEEc-CCCCCCHH-----HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECC
Confidence 00000 0000 11 12111 1356889999999999996 6679999985334 7999999998
Q ss_pred CCC
Q 019076 314 PGY 316 (346)
Q Consensus 314 Pg~ 316 (346)
++-
T Consensus 322 l~g 324 (1236)
T 3va7_A 322 LQV 324 (1236)
T ss_dssp CCT
T ss_pred CCC
Confidence 863
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=133.32 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHHHhCCCeeee-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecC
Q 019076 97 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPL 173 (346)
Q Consensus 97 ~~y~~~~p~v~VI-Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~ 173 (346)
.+..++ .|++++ .++++++.+.||..+.+.+.+ .+||+|++. .+. +.+++.+. ...++||+|+||.
T Consensus 111 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GIPvp~~~~~~v~-s~eea~~~--a~~igyPvVVKp~ 179 (1165)
T 2qf7_A 111 VDACNK-AGIIFIGPKADTMRQLGNKVAARNLAIS-------VGVPVVPATEPLPD-DMAEVAKM--AAAIGYPVMLKAS 179 (1165)
T ss_dssp HHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBC--------------------------------
T ss_pred HHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHH-------cCCCCCCeeCcCCC-CHHHHHHH--HHhcCCCEEEEeC
Confidence 333333 467775 678999999999999999987 589999987 443 33333221 2458999999998
Q ss_pred cCCCCCCceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCccc
Q 019076 174 VVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSK 235 (346)
Q Consensus 174 ~a~GS~~sh~m~lv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG~~---v~-~~~R~-Slp~~~~ 235 (346)
.+. +|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. +. ...|. +..
T Consensus 180 ~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~~---- 251 (1165)
T 2qf7_A 180 WGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDCSVQ---- 251 (1165)
T ss_dssp -------------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEEE----
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccce----
Confidence 633 57899999999887642 25799999997 4789999998763 33 23331 110
Q ss_pred chhhcccceeecccccccccccCCC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCC
Q 019076 236 RELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYF 313 (346)
Q Consensus 236 ~~~~~~~g~~~~~~vs~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~f 313 (346)
........ .+ +. .+++. ..+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||||.-
T Consensus 252 ---r~~~~~~e---------~~-Pa~~l~~~-----~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR 312 (1165)
T 2qf7_A 252 ---RRNQKVVE---------RA-PAPYLSEA-----QRQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPR 312 (1165)
T ss_dssp ---ETTEEEEE---------EE-SCTTCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred ---ecccceEE---------ec-ccccCCHH-----HHHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcC
Confidence 00000000 00 11 11110 135678999999999999854 59999982234 7999999999
Q ss_pred CCCC
Q 019076 314 PGYG 317 (346)
Q Consensus 314 Pg~~ 317 (346)
+|..
T Consensus 313 ~~~~ 316 (1165)
T 2qf7_A 313 IQVE 316 (1165)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9853
|
| >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=97.29 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
..++++..+.+++....||...-+.|.+ .|||+|+++. .+++ .++||+|+||.. |+ +|+
T Consensus 81 ~~~~p~~p~~~~l~~~~dr~~~~~~l~~-------~Gip~P~~~~----~ee~-------~i~~PviVKp~~--g~-ggk 139 (320)
T 2pbz_A 81 KAKARFFGNRRFLKWETTFELQDKALEG-------AGIPRVEVVE----PEDA-------KPDELYFVRIEG--PR-GGS 139 (320)
T ss_dssp TCCSCCBSCSSGGGGGSCHHHHHHHHHH-------HTCCBCCBCC----SCCC-------CSSCCEEEECC---------
T ss_pred HcCCCcCCCHHHHHHHHhHHHHHHHHHH-------CCcCCCCeeC----HhHc-------CcCCcEEEEECC--CC-CCC
Confidence 5678899999999999999877788886 4899999872 2221 489999999987 55 689
Q ss_pred eeEEEeChhhhhcc----CCCeEEEecccCCCeEEEE--E--EECCEEE-EEEeecCCCcccchhhcccceeecccc---
Q 019076 183 ELFLAYDRFSLSEL----EPPMLLQEFVNHGGILFKI--Y--IIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRV--- 250 (346)
Q Consensus 183 ~m~lv~~~~~L~~l----~~p~v~QEfI~h~G~~~KV--~--VvG~~v~-~~~R~Slp~~~~~~~~~~~g~~~~~~v--- 250 (346)
|+.++.+ ++|... ..++++||||+ |..+-+ | ++-+++. +..+.-+.+. +|.+..+.+
T Consensus 140 G~~~v~~-eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~~--------~g~~~~p~~~~~ 208 (320)
T 2pbz_A 140 GHFIVEG-SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLIA--------DGNARWPVKPLP 208 (320)
T ss_dssp ------C-EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEETT--------CSSSSSCCSCCC
T ss_pred CEEEECh-HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEEE--------CCeeecccCCCc
Confidence 9999999 998754 25899999997 554431 1 1222322 1111111110 111111000
Q ss_pred -cccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh------C-CcEeEEEEEEecCcCCeEEEEeccCC-CC
Q 019076 251 -SSAAASADDADLDPGIAELPPRPLLERLARELRHRL------G-LRLFNIDMIREHGMRDVFYVIDINYF-PG 315 (346)
Q Consensus 251 -s~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l------G-l~lfGvDvi~~~~~g~~~~ViDVN~f-Pg 315 (346)
+-.+.. +..+++ ...+.+.++|.++.++| | ...+++| + .. +| +++|+|||.= +|
T Consensus 209 ~~~~G~~--P~~~~~-----~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 209 YTIVGNR--AIALRE-----SLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp CCEEEEE--ECEECG-----GGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred eeeecCC--CCccCH-----HHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 000000 111111 12456889999999998 4 5677899 5 32 23 6899999995 44
|
| >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.2e-08 Score=93.44 Aligned_cols=177 Identities=12% Similarity=0.150 Sum_probs=102.3
Q ss_pred CCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCce
Q 019076 103 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 182 (346)
Q Consensus 103 ~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh 182 (346)
..++++.-+..+++...||...-+.|.+ ++||||+++ . +.+ .++||+|+||.. | +.++
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~-------~GIptp~~~--~-~~~---------e~~~PvVVK~~~--~-a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLRE-------AGLRVPKKY--E-SPE---------DIDGTVIVKFPG--A-RGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHH-------TTCCCCCEE--S-SGG---------GCCSCEEEECSC--C-CC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHH-------cCcCCCCEe--C-CHH---------HcCCCEEEeeCC--C-CCCC
Confidence 4567777777777778888877777776 589999862 2 211 236899999874 3 3689
Q ss_pred eeEEEeChhhhhcc------------C--CCeEEEecccCCCeEEEE---E-EECCEEE--EEEeecCCC------cccc
Q 019076 183 ELFLAYDRFSLSEL------------E--PPMLLQEFVNHGGILFKI---Y-IIGETIK--VVRRFSLPN------VSKR 236 (346)
Q Consensus 183 ~m~lv~~~~~L~~l------------~--~p~v~QEfI~h~G~~~KV---~-VvG~~v~--~~~R~Slp~------~~~~ 236 (346)
|+.++.+.+++.+. . .++++||||+ |..+-+ | ++++++. .+.++-.-+ +...
T Consensus 165 Gv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~ 242 (361)
T 2r7k_A 165 GYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAK 242 (361)
T ss_dssp -EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHH
T ss_pred CEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchh
Confidence 99999999887542 1 4699999996 666542 1 1244322 222220000 0000
Q ss_pred hhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh-------CCcEeEEEEEEecCcCCeEEEEe
Q 019076 237 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-------GLRLFNIDMIREHGMRDVFYVID 309 (346)
Q Consensus 237 ~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l-------Gl~lfGvDvi~~~~~g~~~~ViD 309 (346)
+.... +.. +..+-.+.. +..+++. ..+.+.++|.++.++| ....++++++++. +| +++|+|
T Consensus 243 ~~~~~-~~~--p~~v~~G~~--Pa~l~~~-----~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~E 310 (361)
T 2r7k_A 243 DQLEM-NIN--PSYVITGNI--PVVIRES-----LLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFE 310 (361)
T ss_dssp HHHTC-CCC--CCEEEEEEE--ECCCCGG-----GHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEE
T ss_pred hhhcc-cCC--CceEEecCc--CCcCCHH-----HHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEEE
Confidence 00000 000 000000000 1122211 2466899999999998 3667789999864 23 689999
Q ss_pred ccCCCC
Q 019076 310 INYFPG 315 (346)
Q Consensus 310 VN~fPg 315 (346)
||.=||
T Consensus 311 IapR~g 316 (361)
T 2r7k_A 311 MSARVD 316 (361)
T ss_dssp EESSBC
T ss_pred EcCCCC
Confidence 999666
|
| >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-11 Score=96.24 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhh
Q 019076 115 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 192 (346)
Q Consensus 115 i~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~ 192 (346)
+..++||..+.++|.+ .+||+|+++ .+. +.+++.+ ....++||+|+||..+. +|.++.++.+.++
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~-~~~~~~~--~~~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVK-DAEEAVR--IAREIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBS-SHHHHHH--HHHHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHH--HHHhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 3456788777666664 689999987 553 2222222 12357999999999733 4679999999988
Q ss_pred hhcc-------------CCCeEEEecccCCCeEEEEEEEC
Q 019076 193 LSEL-------------EPPMLLQEFVNHGGILFKIYIIG 219 (346)
Q Consensus 193 L~~l-------------~~p~v~QEfI~h~G~~~KV~VvG 219 (346)
|... ..++++||||+. .+.+.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 7542 367999999962 3577777766
|
| >3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-06 Score=83.57 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=81.2
Q ss_pred CCccEEEEcccchhhHHHHHHHHHhCCC-eeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCC---
Q 019076 78 GPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDS--- 152 (346)
Q Consensus 78 ~~fDvilhK~t~~~~~~~l~~y~~~~p~-v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i-~~~~--- 152 (346)
..||++..-....-+.. +..+|+ .-.||-......+..|..+...+++.. ......=..|+|+++ ..+-
T Consensus 38 ~~~dl~W~~~~~~p~~~-----l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~~~~~f~P~ty~L~P~~~~~p 111 (380)
T 3tig_A 38 PKFNLMLGERNRLPFGR-----LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELTETCTWFPESYVIYPTNEKTP 111 (380)
T ss_dssp SCCSEEECCSSSCCGGG-----SSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHHTTCTTSCCEEECCC------
T ss_pred CceeEEEecCCCCCHHH-----hccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcccccCcCCcceeeCccccccc
Confidence 36888886432211200 112355 357888888899999998888886521 000112357888877 2210
Q ss_pred -----------------CChhhHH------HhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc----CCCeEEEec
Q 019076 153 -----------------LSIPDQV------FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL----EPPMLLQEF 205 (346)
Q Consensus 153 -----------------~~~~~~l------~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l----~~p~v~QEf 205 (346)
++..+.+ ...+-+.++|+||.. || .+.|+.++.+.+++.++ ..++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI~l~~~~~~i~~~~~~~~~~~VvQkY 188 (380)
T 3tig_A 112 AMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGILISSDATELLDFIDNQGQVHVIQKY 188 (380)
T ss_dssp ------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CCBCCSCSHHHHHHHHHHTSCEEEEEC
T ss_pred cccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCEEEeCCHHHHHHHHhccCCcEEEEec
Confidence 1111111 124567899999986 54 78999999998887653 578999999
Q ss_pred ccC------CCe--EEEEEEE
Q 019076 206 VNH------GGI--LFKIYII 218 (346)
Q Consensus 206 I~h------~G~--~~KV~Vv 218 (346)
|.. +|+ |+|+||+
T Consensus 189 I~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 189 LESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CSSBCCBTTTTBCEEEEEEEE
T ss_pred ccCceeecCCCceeEEEEEEE
Confidence 986 564 8899998
|
| >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-07 Score=81.98 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=67.9
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCC--CCCCceeeEE-EeChhhhh
Q 019076 118 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--GSAKSHELFL-AYDRFSLS 194 (346)
Q Consensus 118 l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~--GS~~sh~m~l-v~~~~~L~ 194 (346)
.+||..+.++|.+ .|||+|++.++.+ .++..+ ....++||+|+||...+ |-..+.++.+ +.+.+++.
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~~-~~ea~~--~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAKT-LDEALE--YAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEESS-HHHHHH--HHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeCC-HHHHHH--HHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 4799999999986 6999999998853 222222 23458999999998641 0014677888 79998876
Q ss_pred cc----------------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 195 EL----------------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 195 ~l----------------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
+. ...+++||||+ +|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999998 5889988888775
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00018 Score=70.73 Aligned_cols=89 Identities=19% Similarity=0.074 Sum_probs=63.6
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcC-CCCCCceeeEEEeChhhhhcc----
Q 019076 122 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---- 196 (346)
Q Consensus 122 ~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l---- 196 (346)
+..-++|++ .|||+|++.++.+ .++..+ ....++||+|+||... .|...+.+|.++.+++++.+.
T Consensus 6 ~~aK~lL~~-------~GIpvp~~~~~~s-~eea~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILAR-------YGVPVPPGKVAYT-PEEAKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCCCCCeEEECC-HHHHHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 345566765 6999999999853 222222 2345789999999862 233356799999998887542
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCE
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
...+++|||+++ |+.+-|.++.|.
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecC
Confidence 147999999974 888988888776
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=69.36 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=65.4
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCc-EEEecCcCC-CCCCceeeEEEeChhhhhcc-
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fP-vVvKP~~a~-GS~~sh~m~lv~~~~~L~~l- 196 (346)
+.+.+-++|.+ ++||+|++.++.+ .++..+ ....++|| +|+||.... |-..+.+|.++.+.+++.+.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s-~eea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFAR-------YGLPAPVGYACTT-PREAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCcCCCCeeEECC-HHHHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 45666777876 6999999998853 222222 23458999 999998632 22357799999998876531
Q ss_pred -------------------CCCeEEEecccCCCeEEEEEEECCEE
Q 019076 197 -------------------EPPMLLQEFVNHGGILFKIYIIGETI 222 (346)
Q Consensus 197 -------------------~~p~v~QEfI~h~G~~~KV~VvG~~v 222 (346)
..++++|+|+++ |+.+-|.++.|+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 136999999974 7888888887763
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00071 Score=66.42 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcCCCC-CCc-------eeeEEEeCh
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGS-AKS-------HELFLAYDR 190 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS-~~s-------h~m~lv~~~ 190 (346)
+.+.+-++|.+ .+||+|++.++.+ .++..+ ....++| |+|+||...+|. -.+ .+|.++.+.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s-~~ea~~--~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSD-------NGVKVQRFFVADT-ANEALE--AAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHH-------CCcCCCCeEEECC-HHHHHH--HHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 34556677775 6999999998853 322222 2345899 899999754443 112 569999998
Q ss_pred hhhhcc-----C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019076 191 FSLSEL-----E---------------PPMLLQEFVNHGGILFKIYIIGET 221 (346)
Q Consensus 191 ~~L~~l-----~---------------~p~v~QEfI~h~G~~~KV~VvG~~ 221 (346)
+++++. . ..+++|||++ .|+.+-|.++.|+
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEcc
Confidence 876532 1 2489999997 4888888888776
|
| >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.015 Score=60.19 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred hcccccCCcEEEEec-CCCCCC--CCC--------CccEEEEcccchhhH-HHHH---------------------HHHH
Q 019076 55 ILTHTNKGISFVAID-QNRPLS--DQG--------PFDVVLHKLSGMEWC-KIIE---------------------DYRQ 101 (346)
Q Consensus 55 ~~~~~~~Gi~~v~id-~~~~l~--~q~--------~fDvilhK~t~~~~~-~~l~---------------------~y~~ 101 (346)
...+++.|++...++ ++. |. ..| +.|+| -|+..-+|. ..+. ++..
T Consensus 400 ~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~l-fklypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g~~ll~ 477 (619)
T 2io8_A 400 EQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCV-WKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLID 477 (619)
T ss_dssp HHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEE-EESSCHHHHHHHHHHC---CCSSCCCCSCCSSCCCCHHH
T ss_pred HHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeE-EecCCHHHHHHHhhhhcccccccccccccCccchHHHHH
Confidence 334559999999998 654 32 112 45555 345543332 1110 2221
Q ss_pred --hCCCeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCC
Q 019076 102 --KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 179 (346)
Q Consensus 102 --~~p~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~ 179 (346)
+..++.+|+|+.++. +.|| .++.+|.++. + .+. -.+++.+ +... . +... ..|.||+. |.
T Consensus 478 ~l~~~~v~iieP~~~~l-lsNK-ailalLw~l~-p--~hp-~LLpT~f---~~~~--~-l~~~----~yV~KPi~--gR- 538 (619)
T 2io8_A 478 VLLRPEVLVFEPLWTVI-PGNK-AILPILWSLF-P--HHR-YLLDTDF---TVND--E-LVKT----GYAVKPIA--GR- 538 (619)
T ss_dssp HHTCTTCEEESCGGGGT-TTST-THHHHHHHHS-T--TCT-TCCCEES---SCCH--H-HHHH----CEEEEETT--CC-
T ss_pred HHHhCCCEEECHHHHHH-hhhH-HHHHHHHHhC-C--CCC-CCCCeee---cCCc--c-cccC----CEEEccCC--CC-
Confidence 357799999999988 8999 4556666643 1 111 2334442 2211 1 1222 49999998 54
Q ss_pred CceeeEEEeC-hhhhhcc-----CCCeEEEecccCCCeE-----EEEEEECCEEE-EEEeec
Q 019076 180 KSHELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGIL-----FKIYIIGETIK-VVRRFS 229 (346)
Q Consensus 180 ~sh~m~lv~~-~~~L~~l-----~~p~v~QEfI~h~G~~-----~KV~VvG~~v~-~~~R~S 229 (346)
++.+|.++.. .+.+.+. +.++|+|+|++-..++ +-+|+||++.. +..|.+
T Consensus 539 eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 539 CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 7788999876 2222222 4679999999987555 88999999976 467765
|
| >3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.11 Score=51.94 Aligned_cols=141 Identities=16% Similarity=0.293 Sum_probs=74.8
Q ss_pred CCccEEEEcccchhh-------------HHHHHHHHHhCCCeeeeChHHHHHHhcCHHH--HHHHHHhccccCCCCcc-c
Q 019076 78 GPFDVVLHKLSGMEW-------------CKIIEDYRQKHPEVTILDPPDAIKHLHNRQS--MLQDVADLNLSDCNGKV-R 141 (346)
Q Consensus 78 ~~fDvilhK~t~~~~-------------~~~l~~y~~~~p~v~VIDp~~ai~~l~dR~~--~~~~L~~l~~~~~~~~I-~ 141 (346)
.+.|+|.-|+.+... ...++.|.+ -+|.++|++.+- .+.||.. .+-.+.+.-+... .-+ .
T Consensus 268 ~~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~--G~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lgEe-~il~~ 343 (474)
T 3n6x_A 268 KRVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRN--GGVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEE-PILSN 343 (474)
T ss_dssp EEECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHT--TSCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSC-CSSEE
T ss_pred eEEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHc--CCEEEeCCCchh-hhcCcHHHHHhHHHHHHhCCHh-hhccC
Confidence 379999999965311 135666753 569999999995 7889841 1111111101111 112 3
Q ss_pred cCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEE--eChhhhhcc-----CCC--eEEEecccCC---
Q 019076 142 VPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA--YDRFSLSEL-----EPP--MLLQEFVNHG--- 209 (346)
Q Consensus 142 ~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv--~~~~~L~~l-----~~p--~v~QEfI~h~--- 209 (346)
+|.++ +. +.+.. +.+ .+++. -+|+||.. |+ ++.+|.+- .+.++..++ ..| +|+||+|.-+
T Consensus 344 VpT~~-c~-~~~~~-~~v-l~~l~-~lViKp~~--g~-gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P 415 (474)
T 3n6x_A 344 VPTYQ-LS-KADDL-KYV-LDNLA-ELVVKEVQ--GS-GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCP 415 (474)
T ss_dssp CCCEE-TT-SHHHH-HHH-HHSGG-GEEEEECC--CE------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEE
T ss_pred CCcee-cC-CHHHH-HHH-Hhchh-heEEEecC--CC-CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccc
Confidence 45433 32 22222 221 22222 69999987 43 45677652 233444442 467 9999999743
Q ss_pred ----C------eEEEEEEE-CCEEEE----EEeecC
Q 019076 210 ----G------ILFKIYII-GETIKV----VRRFSL 230 (346)
Q Consensus 210 ----G------~~~KV~Vv-G~~v~~----~~R~Sl 230 (346)
| .++|+|++ |+.+.+ ..|-++
T Consensus 416 ~~~~~~~~~r~~dlR~F~~~g~~~~v~pGgltRva~ 451 (474)
T 3n6x_A 416 TLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVAL 451 (474)
T ss_dssp EEETTEEEEEEEEEECEEEESSSEEECSCCEEEEEC
T ss_pred eeeCCceeeeeEEEEEEEEcCCceEEecceEEEEec
Confidence 2 47888988 654443 455544
|
| >2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A | Back alignment and structure |
|---|
Probab=89.33 E-value=4.4 Score=42.02 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred cccccCCcEEEEec-CCCCCC--C-------C-CCccEEEEcccchhhHHHH-------------------HHHHH--hC
Q 019076 56 LTHTNKGISFVAID-QNRPLS--D-------Q-GPFDVVLHKLSGMEWCKII-------------------EDYRQ--KH 103 (346)
Q Consensus 56 ~~~~~~Gi~~v~id-~~~~l~--~-------q-~~fDvilhK~t~~~~~~~l-------------------~~y~~--~~ 103 (346)
..+++.|++...++ ++. |. + + .+.|++ -|+..-+|...- ..|.. ..
T Consensus 417 ~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~l-fKLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~~l~~ 494 (652)
T 2vob_A 417 QAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNV-WKTWMWESAITDYYAAREERGENWKPSPKDKVRLCDLLLG 494 (652)
T ss_dssp HHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEE-EECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHHHHSS
T ss_pred HHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEE-EecCCHHHHHHhhhhcccccccccccCccchhHHHHHHhc
Confidence 33558999999987 653 32 1 2 266776 456654442111 02321 24
Q ss_pred C--CeeeeChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCc
Q 019076 104 P--EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 181 (346)
Q Consensus 104 p--~v~VIDp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~s 181 (346)
. .+.+|+|+-++. +.|| .++.+|.++.-. +.- .+++. .+... .+... ..|.||+. |- ++
T Consensus 495 ~~~~v~~ieP~wk~L-lsNK-aiLalLW~l~p~---hp~-LLpt~---f~~~~---~~~~~----~yV~KPi~--gR-eG 555 (652)
T 2vob_A 495 DDWEILYFEPMWKVI-PSNK-AILPMIYHNHPE---HPA-ILKAE---YELTD---ELRKH----GYAKKPIV--GR-VG 555 (652)
T ss_dssp SCTTSEEESCGGGGT-TTST-THHHHHHHHCTT---CTT-BCCEE---SSCCH---HHHHH----CEEEEECC-------
T ss_pred CCCceEEeChhHHHh-hcCH-HHHHHHHhcccC---CCC-CCchh---hcCCC---ccccC----CeEeccCC--CC-CC
Confidence 6 799999987764 5898 667778775211 221 23333 12221 11122 49999998 44 67
Q ss_pred eeeEEEeChhh-hhcc-----CCCeEEEecccCC-----CeEEEEEEECCEEE-EEEeec
Q 019076 182 HELFLAYDRFS-LSEL-----EPPMLLQEFVNHG-----GILFKIYIIGETIK-VVRRFS 229 (346)
Q Consensus 182 h~m~lv~~~~~-L~~l-----~~p~v~QEfI~h~-----G~~~KV~VvG~~v~-~~~R~S 229 (346)
.+|.++....+ ..+. +.++|+|||++-. -..+=+|++|++.. +..|-+
T Consensus 556 ~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 556 SNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp -----------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred CCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 78888754322 1221 4689999999854 23678999999976 467765
|
| >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=2.1 Score=42.07 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=53.7
Q ss_pred cccCcEEEEccCCCChhhHH-HhhCCC-CcEEEecCcC-CCCCCceeeEEEeChhhhhcc-----------C------CC
Q 019076 140 VRVPRQMVITKDSLSIPDQV-FEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----------E------PP 199 (346)
Q Consensus 140 I~~P~~~~i~~~~~~~~~~l-~~~~l~-fPvVvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----------~------~p 199 (346)
+..|++.++.. ..+..+.. ....++ ||+|+|+.+. .|-.+..+|.+..+.++.++. . .-
T Consensus 26 ~~~~~~~~~~~-~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVTP-DTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEECT-TCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeCC-CCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 45566777753 33333322 234577 9999999764 344567899999998776542 0 13
Q ss_pred eEEEecccCC-CeEEEEEEECCE
Q 019076 200 MLLQEFVNHG-GILFKIYIIGET 221 (346)
Q Consensus 200 ~v~QEfI~h~-G~~~KV~VvG~~ 221 (346)
+++|++++|+ ++.|-+-+.=|+
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEET
T ss_pred EEEEecccCCCCceEEEEEEecC
Confidence 8999999986 788877666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| d1i7na2 | 206 | Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 | 99.83 | |
| d1uc8a2 | 192 | Lysine biosynthesis enzyme LysX ATP-binding domain | 99.8 | |
| d1ehia2 | 228 | D-alanine:D-lactate ligase VanA, C-domain {Leucono | 99.71 | |
| d1e4ea2 | 211 | D-alanine:D-lactate ligase VanA, C-domain {Enteroc | 99.71 | |
| d1iowa2 | 210 | D-ala-D-ala ligase, C-domain {Escherichia coli, ge | 99.69 | |
| d1gsaa2 | 192 | Prokaryotic glutathione synthetase, C-domain {Esch | 99.66 | |
| d2r7ka2 | 238 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.29 | |
| d1vkza3 | 220 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 99.27 | |
| d1a9xa5 | 275 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.23 | |
| d2r85a2 | 235 | 5-formaminoimidazole-4-carboxamide ribonucleotide | 99.23 | |
| d1a9xa6 | 259 | Carbamoyl phosphate synthetase (CPS), large subuni | 99.22 | |
| d1ulza3 | 214 | Biotin carboxylase (BC), domain 2 {Aquifex aeolicu | 99.18 | |
| d3etja3 | 198 | N5-carboxyaminoimidazole ribonucleotide synthetase | 99.14 | |
| d1w96a3 | 267 | Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye | 99.12 | |
| d1kjqa3 | 206 | Glycinamide ribonucleotide transformylase PurT, do | 99.1 | |
| d2j9ga3 | 216 | Biotin carboxylase (BC), domain 2 {Escherichia col | 99.05 | |
| d1gsoa3 | 224 | Glycinamide ribonucleotide synthetase (GAR-syn), d | 98.93 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 97.49 | |
| d2nu7b2 | 238 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 93.02 | |
| d1eucb2 | 246 | Succinyl-CoA synthetase, beta-chain, N-terminal do | 92.57 |
| >d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Synapsin C-terminal domain domain: Synapsin II species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=1.2e-19 Score=161.13 Aligned_cols=192 Identities=10% Similarity=0.087 Sum_probs=122.2
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeC
Q 019076 110 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 189 (346)
Q Consensus 110 Dp~~ai~~l~dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~ 189 (346)
|++++|++|.||..++..+..........++|++.+.... ...+ ....++||+|+||.. |+ +|+||.++.+
T Consensus 1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~----~~~~--~~~~~~~PvVvKP~~--g~-~g~Gv~~v~~ 71 (206)
T d1i7na2 1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYP----NHRE--MLTLPTFPVVVKIGH--AH-SGMGKVKVEN 71 (206)
T ss_dssp SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEES----SGGG--GSSCCCSSEEEEESS--CS-TTTTEEEECS
T ss_pred CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeeccccc----chhH--HhhhcCCceEEecCC--CC-CCCCeEEEee
Confidence 7899999999995443222211000012355655543221 1212 234578999999987 44 5799999999
Q ss_pred hhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCC
Q 019076 190 RFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 262 (346)
Q Consensus 190 ~~~L~~l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~ 262 (346)
.++|... ..++++||||+ ++++++|+|+|+++.++.|++..+ +|+++. .. ++..
T Consensus 72 ~~~l~~~~~~~~~~~~~~~vqe~I~-~~~dirv~vig~~~~~~~~~~~~~----~~~~n~--------~~------~~~~ 132 (206)
T d1i7na2 72 HYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKTNT--------GS------AMLE 132 (206)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCT----TTSCSC--------CC------SSEE
T ss_pred cchhhhHHHHHhhccCeEEEEEeec-ccceEEEEEEecceeEEEeecccc----cccccc--------cc------Cccc
Confidence 9988653 67899999996 468999999999998877766432 333221 10 1111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc---HHHHHHHHHHHHHh
Q 019076 263 DPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY---EHIFTDFLLSLEQS 336 (346)
Q Consensus 263 ~~~~~~~p~~~~~~~lA~~l~~~l-Gl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~---~~~l~~~l~~~i~~ 336 (346)
.+ .+ .+..++++.++++.+ +++++|||++++. .| ++||+|||..|.+.-.... ...++|.+.+.+++
T Consensus 133 ~~----~~-~~~~~~~~~~~~~~~~~~~~~gvD~~~~~-dG-~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~ 203 (206)
T d1i7na2 133 QI----AM-SDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQ 203 (206)
T ss_dssp EE----CC-CHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cc----cC-ChHHHHHHHHHhhhccccceeeEEEEEcC-CC-CEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 10 11 233566666666666 5799999999974 44 7999999998864322221 23467777666654
|
| >d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Lysine biosynthesis enzyme LysX ATP-binding domain domain: Lysine biosynthesis enzyme LysX ATP-binding domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=8.4e-20 Score=157.83 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=114.6
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh------
Q 019076 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS------ 194 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~------ 194 (346)
|+.|.+.|++ +||++|+|+++. +.+++.+. ...++||+|+||..+. .|.+|.++.+.+...
T Consensus 1 K~~~~~~l~~-------~GipvP~t~~~~-~~~~~~~~--~~~~g~P~ivKP~~g~---~g~gv~~~~~~~~~~~~~~~~ 67 (192)
T d1uc8a2 1 KWATSVALAK-------AGLPQPKTALAT-DREEALRL--MEAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXK 67 (192)
T ss_dssp HHHHHHHHHH-------TTCCCCCEEEES-SHHHHHHH--HHHHCSSEEEECSBCC---BCSHHHHHHHHHC--------
T ss_pred CHHHHHHHHH-------cCcCCCCEEEEC-CHHHHHHH--HHHhCCCEEEECCcCC---cccceeeccccccchhhHHHH
Confidence 6789999997 699999999885 33333332 3457899999998744 456665433333222
Q ss_pred ----c-cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCC
Q 019076 195 ----E-LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAEL 269 (346)
Q Consensus 195 ----~-l~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~ 269 (346)
. ...++++||||+....+++++++|+++.....+....+.. . ... ..... ..
T Consensus 68 ~~~~~~~~~~~lvqefi~g~~~~~~v~~~~g~~~~~~~~~~~~~~~-----~--------~~~------~~~~~----~~ 124 (192)
T d1uc8a2 68 EVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWIT-----N--------TAR------GGQAE----NC 124 (192)
T ss_dssp ----CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---------------------------------CE----EC
T ss_pred HHHhccCCCCEEEEEecCCCCeeEEEEEECCEEEeEEEeeeccccc-----c--------ccc------ccccc----cc
Confidence 1 2468999999997778899999999987655443322210 0 000 00000 01
Q ss_pred CChHHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCCccc-----HHHHHHHHHH
Q 019076 270 PPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY-----EHIFTDFLLS 332 (346)
Q Consensus 270 p~~~~~~~lA~~l~~~lGl~lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~-----~~~l~~~l~~ 332 (346)
...+....++.++.++++.+++|||++.+++ ++||+|||..||+.+++.. .+.+.++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~g~~~vD~~~~~~---~~~vlEiN~r~g~~~~~~~~G~d~~~~ii~~a~~ 189 (192)
T d1uc8a2 125 PLTEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSVHTTGVDIPGEILKYAWS 189 (192)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHHHHHCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhHHHhhhccccceEEEecCC---CEEEEEEcCCCchhHHHHHHCcCHHHHHHHHHHH
Confidence 1234578889999999999999999999853 6999999999999887643 4555555544
|
| >d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
Probab=99.71 E-value=1.3e-16 Score=142.07 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=113.7
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCC--hhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS--IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~--~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l- 196 (346)
||..|.++|.+ +||+||++.++...... ..+. ....++||+|+||.. |+ .|++|.++.++++|...
T Consensus 1 dK~~~k~~l~~-------~gi~tp~~~~~~~~~~~~~~~~~-~~~~~g~P~VvKP~~--g~-~s~GV~~~~~~~el~~~~ 69 (228)
T d1ehia2 1 DKALTKELLTV-------NGIRNTKYIVVDPESANNWSWDK-IVAELGNIVFVKAAN--QG-SSVGISRVTNAEEYTEAL 69 (228)
T ss_dssp SHHHHHHHHHT-------TTCCCCCEEEECTTGGGGCCHHH-HHHHHCSCEEEEESS--CC-TTTTEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCEEEEchhhcChHHHHH-HHHHhCCCEEEEEec--cC-CCccceeccccchhhhhh
Confidence 78889999986 69999999998532211 1111 235689999999987 33 57899999999998653
Q ss_pred ------CCCeEEEecccCCCeEEEEEEECCE--EE-EEEeecCCCcccchhhcccceeecccccccccc---cCCCCCCC
Q 019076 197 ------EPPMLLQEFVNHGGILFKIYIIGET--IK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS---ADDADLDP 264 (346)
Q Consensus 197 ------~~p~v~QEfI~h~G~~~KV~VvG~~--v~-~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~---~~~~~~~~ 264 (346)
...+++|||+. +++.+-+.++++. +. .......+... ...+.++++........ .....+++
T Consensus 70 ~~~~~~~~~~liee~i~-g~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 143 (228)
T d1ehia2 70 SDSFQYDYKVLIEEAVN-GARELEVGVIGNDQPLVSEIGAHTVPNQG-----SGDGWYDYNNKFVDNSAVHFQIPAQLSP 143 (228)
T ss_dssp HHHTTTCSCEEEEECCC-CSCEEEEEEEESSSCEEEEEEEEECTTSS-----SSSCCCCHHHHTTCCTTCEEESSCCCCH
T ss_pred hhhcccccccccceEEe-ccceEEEEEeeCCCcceeeeeeeeccccc-----cccceeeeeccccccccccccchhhhhH
Confidence 46799999996 4577888777654 22 12222222111 11223333322111100 01111111
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 265 GIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 265 ~~~~~p~~~~~~~lA~~l~~~lGl~lfG-vDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
. ..+.++++|.++.++||+.-++ +|++++. +| .+|++|||..||+..
T Consensus 144 ~-----~~~~i~~~~~~~~~~lg~~~~~~iD~~~d~-~g-~~~~lEvN~~Pg~~~ 191 (228)
T d1ehia2 144 E-----VTKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEPNTLPGFTN 191 (228)
T ss_dssp H-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCST
T ss_pred H-----HHHHHHHHHHHHHhhhhcCCeeeEEEEEcC-CC-cEEEEEecCCCCCCc
Confidence 0 1345789999999999998776 9999975 44 699999999999864
|
| >d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-alanine:D-lactate ligase VanA, C-domain species: Enterococcus faecium [TaxId: 1352]
Probab=99.71 E-value=9.4e-17 Score=141.27 Aligned_cols=176 Identities=18% Similarity=0.266 Sum_probs=112.9
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..|.+++++ +||+||++.++..+... ....++||+|+||..++ .|.||.++.+.++|...
T Consensus 1 DK~~~~~~~~~-------~Gi~tP~~~~~~~~~~~-----~~~~~~fP~viKP~~gg---~s~Gv~~v~~~~el~~~~~~ 65 (211)
T d1e4ea2 1 DKSLTYIVAKN-------AGIATPAFWVINKDDRP-----VAATFTYPVFVKPARSG---SSFGVKKVNSADELDYAIES 65 (211)
T ss_dssp SHHHHHHHHHH-------TTCBCCCEEEECTTCCC-----CGGGSCSCEEEEESSCC---TTTTCEEECSGGGHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCCCCeEEECchhHH-----HHHhcCCCEEEeecccc---Ccchhccccccccchhhccc
Confidence 78999999997 69999999999644332 23468999999998633 36789999999998642
Q ss_pred ----CCCeEEEecccCCCeEEEEEEECCEEEEEE--eecCCCcccchhhcccceeec-ccccccccccCCCCCCCCCCCC
Q 019076 197 ----EPPMLLQEFVNHGGILFKIYIIGETIKVVR--RFSLPNVSKRELAKVVSVFRF-PRVSSAAASADDADLDPGIAEL 269 (346)
Q Consensus 197 ----~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~--R~Slp~~~~~~~~~~~g~~~~-~~vs~~~~~~~~~~~~~~~~~~ 269 (346)
...+++|+|+ .|..+.++++++....+. ...... ..+.... ................|.....
T Consensus 66 ~~~~~~~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 135 (211)
T d1e4ea2 66 ARQYDSKILIEQAV--SGCEVGCAVLGNSAALVVGEVDQIRL--------QYGIFRIHQEVEPEKGSENAVITVPADLSA 135 (211)
T ss_dssp HTTTCSSEEEEECC--CSEEEEEEEEEETTCCEECCCEEEEE--------SSSCCCGGGSSSGGGCCSSEEECSSCSSCH
T ss_pred cccccccccccccc--ccccceeeccCCCcceeeeeceeecc--------ccchhhhhhhhhhcccccceeeeccccccH
Confidence 4568999999 488999999976522111 000000 0000000 0000000000000011111011
Q ss_pred CChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCCccc
Q 019076 270 PPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 322 (346)
Q Consensus 270 p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv~~~ 322 (346)
...+.++++|.++.++||+. ++++|++.+. +| ++||+|||..||+.....+
T Consensus 136 ~~~~~i~~~a~~~~~~lg~~g~~~id~~~~~-~g-~~~viEiN~~pg~~~~s~~ 187 (211)
T d1e4ea2 136 EERGRIQETVKKIYKTLGCRGLARVDMFLQD-NG-RIVLNEVNTLPGFTSYSRY 187 (211)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TC-CEEEEEEESSCCCSTTCHH
T ss_pred hhhhhhHHHHHHHHHhhccCCeeEEEEEEcC-CC-CEEEEEEeCCCCCCCccHH
Confidence 12356899999999999997 8889999985 44 7999999999998765433
|
| >d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: D-ala-D-ala ligase, C-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=99.69 E-value=2.9e-16 Score=138.02 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=112.0
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccC-----CCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc
Q 019076 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITKD-----SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 195 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~-----~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~ 195 (346)
|+.|-++|++ +|||||++.++.+. ..+. .......++||+|+||..+. +|.+|.++.+.++|.+
T Consensus 1 K~~tk~~~~~-------~Giptp~~~~~~~~~~~~~~~~~-~~~~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~ 69 (210)
T d1iowa2 1 KLRSKLLWQG-------AGLPVAPWVALTRAEFEKGLSDK-QLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQD 69 (210)
T ss_dssp HHHHHHHHHH-------TTCCBCCEEEEEHHHHHHCCCTH-HHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHH
T ss_pred CHHHHHHHHH-------cCCCCCCeEEEechhhcccchHH-HHHHHHhcCCCEEEeecccc---CceecccccchhhhhH
Confidence 5678888886 59999999998531 1111 11234679999999998733 5789999999999875
Q ss_pred c-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCC
Q 019076 196 L-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE 268 (346)
Q Consensus 196 l-------~~p~v~QEfI~h~G~~~KV~VvG~~v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~ 268 (346)
+ ...+++|+|+ .|+++.|+++|+............. .+. ..+...+.. .. .......++
T Consensus 70 ~~~~~~~~~~~vlve~~i--~g~e~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-~~---~~~~~~~~~---- 135 (210)
T d1iowa2 70 ALRLAFQHDEEVLIEKWL--SGPEFTVAILGEEILPSIRIQPSGT---FYD-YEAKFLSDE-TQ---YFCPAGLEA---- 135 (210)
T ss_dssp HHHHHTTTCSEEEEEECC--CCCEEEEEEETTEECCCEEEECSSS---SSC-HHHHHTCSC-CE---EESSCCCCH----
T ss_pred HHHHhhccCccccccccc--cCceeEEEeecCcccceeEEecccc---eee-ecccccccc-cc---ccccccccc----
Confidence 3 4679999999 5999999999997432221111110 000 000000000 00 000111111
Q ss_pred CCChHHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCC
Q 019076 269 LPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 319 (346)
Q Consensus 269 ~p~~~~~~~lA~~l~~~lGl~-lfGvDvi~~~~~g~~~~ViDVN~fPg~~gv 319 (346)
.....+++++.++.+++|.. ++++|++.+. +| ++|++|||..||+...
T Consensus 136 -~~~~~~~~~~~~~~~~~~~~g~~~vdf~~d~-~g-~~~~lEiN~~pg~~~~ 184 (210)
T d1iowa2 136 -SQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 184 (210)
T ss_dssp -HHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred -ccchhHHHHHHHHHHHhCCCCceEEEEEECC-CC-CEEEEEEeCCCCCCCc
Confidence 12456889999999999998 5559999985 45 6999999999998754
|
| >d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: ATP-binding domain of peptide synthetases domain: Prokaryotic glutathione synthetase, C-domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.3e-16 Score=140.04 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=105.9
Q ss_pred ccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhh---------ccCCCeEEEecccCC-C
Q 019076 141 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS---------ELEPPMLLQEFVNHG-G 210 (346)
Q Consensus 141 ~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~---------~l~~p~v~QEfI~h~-G 210 (346)
.+|+|++.. +.+++.+.+...+ |+|+||+. || +++++.++.+.+... ....++++|+|++.. +
T Consensus 12 ~~P~Tlit~-~~~~~~~f~~~~g---~vV~Kpl~--gs-~G~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 84 (192)
T d1gsaa2 12 LTPETLVTR-NKAQLKAFWEKHS---DIILKPLD--GM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKD 84 (192)
T ss_dssp TSCCEEEES-CHHHHHHHHHHHS---SEEEECSS--CC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGG
T ss_pred cCCCeEEEC-CHHHHHHHHHHcC---CeEEEEcC--CC-eEEEEEEeecCchhhhHHHHHHHhcCccccccccccccccC
Confidence 389999874 4555545444433 99999998 66 788999997653321 125678999999863 7
Q ss_pred eEEEEEEECCEEEE-EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh---
Q 019076 211 ILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL--- 286 (346)
Q Consensus 211 ~~~KV~VvG~~v~~-~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l--- 286 (346)
.++|++|||+++++ +.|++... ++|+++ ++. ++...+ .++.+..+++|.+++++|
T Consensus 85 ~d~Rv~vv~~~~~~a~~r~~~~~---~~~~~n--------~~~------Gg~~~~----~~~~~~~~~~a~~~~~~l~~~ 143 (192)
T d1gsaa2 85 GDKRVLVVDGEPVPYCLARIPQG---GETRGN--------LAA------GGRGEP----RPLTESDWKIARQIGPTLKEK 143 (192)
T ss_dssp CEEEEEEETTEECSEEEEEECCS---SCSCCC--------GGG------TCEEEE----EECCHHHHHHHHHHHHHHHHT
T ss_pred ceeEEEEECCcceEEEEEecccC---Ccchhh--------hhc------cCccee----ecccHHHHHHHHHHHHHHHhh
Confidence 89999999999884 56654331 233322 222 222211 112355677777777776
Q ss_pred CCcEeEEEEEEecCcCCeEEEEecc--CCCCCCCCccc-----HHHHHHHHHHHH
Q 019076 287 GLRLFNIDMIREHGMRDVFYVIDIN--YFPGYGKMPDY-----EHIFTDFLLSLE 334 (346)
Q Consensus 287 Gl~lfGvDvi~~~~~g~~~~ViDVN--~fPg~~gv~~~-----~~~l~~~l~~~i 334 (346)
|+.+.|||+| + + |++||| ..|||++++.. ++.++|+|.+++
T Consensus 144 gl~~~gVDii---~--~--~~~EiNv~s~~g~~~l~~~~g~~ia~~ivd~l~~ki 191 (192)
T d1gsaa2 144 GLIFVGLDII---G--D--RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARL 191 (192)
T ss_dssp TCCEEEEEEE---T--T--EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHT
T ss_pred cCceEEEEee---C--C--eEEEEEcCCcHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999 2 2 456666 66999887765 566777776654
|
| >d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.29 E-value=1.1e-11 Score=111.17 Aligned_cols=161 Identities=12% Similarity=0.157 Sum_probs=93.5
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..|-+.|.+ +|||+|+.+ . ....++||+|+||.. |+ +|+++.+++|+++|...
T Consensus 1 DK~~~k~~l~~-------~Gip~P~~~---~---------~~~~i~~PvVVKP~~--g~-gs~Gv~~v~~~~el~~a~~~ 58 (238)
T d2r7ka2 1 ERSLEGKLLRE-------AGLRVPKKY---E---------SPEDIDGTVIVKFPG--AR-GGRGYFIASSTEEFYKKAED 58 (238)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEE---S---------SGGGCCSCEEEECSC--CC-C---EEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCCcccc---c---------CHhHCCCCEEEEECC--CC-CCCCeEEeCCHHHHHHHHHH
Confidence 78888889987 699999854 1 113489999999976 44 68999999999987642
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECC----EE--EEEE-eecC--CCc---ccchhhcccceeeccccccc
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIYIIGE----TI--KVVR-RFSL--PNV---SKRELAKVVSVFRFPRVSSA 253 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~VvG~----~v--~~~~-R~Sl--p~~---~~~~~~~~~g~~~~~~vs~~ 253 (346)
..++++|||| .|..+-+.++.+ .+ .+.. +... ..+ ........ +.. +..+..
T Consensus 59 ~~~~~~~~~~~~~~v~vEe~i--~G~e~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 133 (238)
T d2r7ka2 59 LKKRGILTDEDIANAHIEEYV--VGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEM-NIN--PSYVIT 133 (238)
T ss_dssp HHHTTSCCHHHHHHCEEEECC--CSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTC-CCC--CCEEEE
T ss_pred HHHHHhhccCCCCcEEEEEee--cCceEEEEEeecccccceEEEeeccCCccEEEEEEEcCHHheecc-Ccc--ccCccc
Confidence 1369999999 477777665532 22 2221 2110 000 00000000 000 000000
Q ss_pred ccccCCCCCCCCCCCCCChHHHHHHHHHHHHHh------CC-cEeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019076 254 AASADDADLDPGIAELPPRPLLERLARELRHRL------GL-RLFNIDMIREHGMRDVFYVIDINY-FPGY 316 (346)
Q Consensus 254 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~l------Gl-~lfGvDvi~~~~~g~~~~ViDVN~-fPg~ 316 (346)
. .....+++ ...+.+.+++.+++++| |. .++++|++.+. +| ++||||||. ++|-
T Consensus 134 ~--~~~~~l~~-----~~~~~i~~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~-dg-~~~viEinpR~~G~ 195 (238)
T d2r7ka2 134 G--NIPVVIRE-----SLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVFEMSARVDGG 195 (238)
T ss_dssp E--EEECCCCG-----GGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEEEEESSBCGG
T ss_pred c--ccCccccH-----HHHHHHHHHHHHHHHHHHHhcccCccccccHhhHhhc-CC-CEEEEEEECCCCCC
Confidence 0 00011111 11356788888888887 53 68889999985 44 699999999 6664
|
| >d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=2.3e-11 Score=107.30 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
+|..|=++|.+ +|||||++.+++ +.+++.+ ....++||+|+||.. |+ +|.+|.++.+.+++.+.
T Consensus 1 sK~~~K~~l~~-------~gIptp~~~~~~-~~~e~~~--~~~~ig~PvVvKP~~--~~-gs~Gv~~v~~~~el~~a~~~ 67 (220)
T d1vkza3 1 SKVYAKRFMKK-------YGIRTARFEVAE-TPEELRE--KIKKFSPPYVIKADG--LA-RGKGVLILDSKEETIEKGSK 67 (220)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEES-SHHHHHH--HHTTSCSSEEEEESS--CC-SSCCEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCCCCeEEeC-CHHHHHH--HHHHcCCCEEEEecc--cc-ccccceeeccHHHHHHHhhh
Confidence 36666677776 699999999885 3333333 235799999999985 33 57999999998776442
Q ss_pred ----------CCCeEEEecccCCCeEEEE--EEECCEEEE
Q 019076 197 ----------EPPMLLQEFVNHGGILFKI--YIIGETIKV 224 (346)
Q Consensus 197 ----------~~p~v~QEfI~h~G~~~KV--~VvG~~v~~ 224 (346)
...+++|||+. |..+-| ++-|+.+.+
T Consensus 68 ~~~~~~~~~~~~~vliEe~i~--g~e~~v~~~~~~~~~~~ 105 (220)
T d1vkza3 68 LIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVI 105 (220)
T ss_dssp HHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEE
T ss_pred hccccccccccceEeeecccc--cccceeEEEEeCCEEEE
Confidence 34699999995 766654 555776543
|
| >d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=5.8e-11 Score=109.11 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=104.1
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..+-+++.+ .|||+|++..+. +.+++.+. ...++||+|+||.. |+ ++++|.++.++++|.+.
T Consensus 1 Dr~~~r~~~~~-------~gip~~~~~~~~-~~~ea~~~--~~~ig~PvviKp~~--~~-gg~G~~~v~~~~el~~~~~~ 67 (275)
T d1a9xa5 1 DRRRFDVAMKK-------IGLETARSGIAH-TMEEALAV--AADVGFPCIIRPSF--TM-GGSGGGIAYNREEFEEICAR 67 (275)
T ss_dssp SHHHHHHHHHH-------TTCCCCSEEEES-SHHHHHHH--HHHHCSSEEEEETT--CC-TTTTCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCCCCceEeC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCCceEEeeCHHHHHHHHHH
Confidence 67777788887 489999999885 33333332 34589999999975 33 58999999999998753
Q ss_pred ------CCCeEEEecccCCCeEEEEEEECC----EEEE--EEeecCCCcccchhhcccceeecccccccccccCCCCCCC
Q 019076 197 ------EPPMLLQEFVNHGGILFKIYIIGE----TIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 264 (346)
Q Consensus 197 ------~~p~v~QEfI~h~G~~~KV~VvG~----~v~~--~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~ 264 (346)
..+++++|||. +.+.+-|.++++ .+.+ ..|. -+.. ..+. . .+ ..+....+++
T Consensus 68 a~~~~~~~~v~iEe~l~-g~~e~~v~~~~d~~g~~~~~~~~~~~-~~~~----~~~~-~-----~~----~~aP~~~L~~ 131 (275)
T d1a9xa5 68 GLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIVCSIENF-DAMG----IHTG-D-----SI----TVAPAQTLTD 131 (275)
T ss_dssp HHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEEEEEEES-SCTT----SCGG-G-----SC----EEESCCSCCH
T ss_pred HHhhCCCCcEEEeeecC-CchhheeeeEEecCCCEEEEEeeccc-cccC----cccC-c-----ee----EEcCCCcCCH
Confidence 46899999997 346778777743 3332 2332 1110 0000 0 00 0000011211
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019076 265 GIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 315 (346)
Q Consensus 265 ~~~~~p~~~~~~~lA~~l~~~lGl--~lfGvDvi~~~~~g~~~~ViDVN~fPg 315 (346)
. ....+.+.|.++.++||+ ..+.+.++++..+| ++|++|+|.-++
T Consensus 132 ~-----~~~~i~~~a~~i~~~lg~~~G~~~~ef~~~~~~~-~~~~iE~npR~~ 178 (275)
T d1a9xa5 132 K-----EYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 178 (275)
T ss_dssp H-----HHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred H-----HHHHHHHHHHHHHHHcCceECceEEEEEEeCCCC-EEEEEEecCCCC
Confidence 0 134588999999999998 45569999876444 899999995554
|
| >d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: PurP ATP-binding domain-like domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=5.5e-11 Score=105.56 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=89.1
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--- 196 (346)
||..|-+.|++ +|||+|+++ +. ...++||+|+||.. |+ +|.++.+|.+++++...
T Consensus 1 DK~~~k~~l~~-------~Gip~P~~~------~~------~~~i~~P~IVKP~~--g~-gs~Gv~~v~~~~e~~~~~~~ 58 (235)
T d2r85a2 1 DRNLERKWLKK-------AGIRVPEVY------ED------PDDIEKPVIVKPHG--AK-GGKGYFLAKDPEDFWRKAEK 58 (235)
T ss_dssp SHHHHHHHHHH-------TTCCCCCBC------SC------GGGCCSCEEEEECC-------TTCEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCchhh------hC------HHHcCCCEEEEECC--CC-CCCCeEEEechHHHHHHHHH
Confidence 78888888886 689999843 11 12489999999987 43 57899999999876542
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECC----E--EEEEEeecCCCcccchhhcccce--eeccc-ccccccccC
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYIIGE----T--IKVVRRFSLPNVSKRELAKVVSV--FRFPR-VSSAAASAD 258 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~VvG~----~--v~~~~R~Slp~~~~~~~~~~~g~--~~~~~-vs~~~~~~~ 258 (346)
..++++|||++ |..+-+-++++ . +.+..+....... ........ ..... .........
T Consensus 59 ~~~~~~~~~~~~~iiee~i~--G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (235)
T d2r85a2 59 FLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNVD--AIGRIPAKDQLEFDMDITYTVIGNI 134 (235)
T ss_dssp HHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEGG--GGGGSCHHHHTTSCCCCCEEEEEEE
T ss_pred HHhhhhhCCCcchhHHhhcC--CeEEEEEEeecccccceEEEEeecCCcceee--EEEeccceeEecccCCCCcceeecc
Confidence 35799999994 77666554432 1 2222221111110 00000000 00000 000000000
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHh------CCcEeEEEEEEecCcCCeEEEEeccCCC
Q 019076 259 DADLDPGIAELPPRPLLERLARELRHRL------GLRLFNIDMIREHGMRDVFYVIDINYFP 314 (346)
Q Consensus 259 ~~~~~~~~~~~p~~~~~~~lA~~l~~~l------Gl~lfGvDvi~~~~~g~~~~ViDVN~fP 314 (346)
...+.+ ...+.+.++|.++.+++ ....+++|++.+. .| ++||+|||.-+
T Consensus 135 ~~~~~~-----~~~~~~~e~~~~~~~~l~~~~~~~~G~~~ve~~~~~-dg-~~~viEiNpR~ 189 (235)
T d2r85a2 135 PIVLRE-----SLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARI 189 (235)
T ss_dssp ECCCCG-----GGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSC
T ss_pred Ccccch-----hHHHHHHHHHHHHHHHHHHhcCCceeeeeEEEEEcC-CC-CEEEEEEeCCC
Confidence 001111 11345677777766665 3457899999985 34 69999999854
|
| >d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2e-11 Score=111.67 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=93.6
Q ss_pred HHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------
Q 019076 126 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--------- 196 (346)
Q Consensus 126 ~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l--------- 196 (346)
++|+++ +|++|++..+. +.+++.+ ....++||+|+||.. |+ ++.+|.+++|+++|.+.
T Consensus 4 ~~l~~l-------gi~~p~~~~v~-s~~ea~~--~a~~iGfPvivKps~--~~-gG~G~~iv~~~~el~~~~~~a~~~~~ 70 (259)
T d1a9xa6 4 HAVERL-------KLKQPANATVT-AIEMAVE--KAKEIGYPLVVRASY--VL-GGRAMEIVYDEADLRRYFQTAVSVSN 70 (259)
T ss_dssp HHHHHH-------TCCCCCEEECC-SHHHHHH--HHHHHCSSEEEEC----------CEEEECSHHHHHHHHHHCC----
T ss_pred HHHHHC-------CCCCCCceEEC-CHHHHHH--HHHHhCCCEEEEECC--CC-CCCccEeecCHHHHHHHhhhhhcccc
Confidence 556664 89999999885 3333333 235689999999976 33 57899999999998763
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE--EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHH
Q 019076 197 EPPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPL 274 (346)
Q Consensus 197 ~~p~v~QEfI~h~G~~~KV~VvG~~--v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~ 274 (346)
+.++++++||+ +++.+-|-+++|. +.+..+- -++.. .|.....+.. ......+++. ..+.
T Consensus 71 ~~~vlie~~i~-~~~Eiev~~i~Dg~~~~i~~i~--e~i~~------~gvhsgds~~----~~p~~~l~~~-----~~~~ 132 (259)
T d1a9xa6 71 DAPVLLDHFLD-DAVEVDVDAICDGEMVLIGGIM--EHIEQ------AGVHSGDSAC----SLPAYTLSQE-----IQDV 132 (259)
T ss_dssp ----EEEBCCT-TCEEEEEEEEECSSCEEEEEEE--EESSC------TTSCGGGCCE----EESCSSCCHH-----HHHH
T ss_pred cchhhhhhhcC-CCeEEEEEEEEeCCcEEEEeee--ecccc------CcceeEeccc----cccCccCCHH-----HHHH
Confidence 35899999997 5666666666443 4332110 01110 0110000000 0001122211 1356
Q ss_pred HHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019076 275 LERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGY 316 (346)
Q Consensus 275 ~~~lA~~l~~~lGl-~lfGvDvi~~~~~g~~~~ViDVN~fPg~ 316 (346)
++++|.++++.||. +++++++++++ +++||||+|.-++-
T Consensus 133 l~~~a~kia~~l~~~G~~~vef~v~~---~~~y~iEvNpR~~~ 172 (259)
T d1a9xa6 133 MRQQVQKLAFELQVRGLMNVQFAVKN---NEVYLIEVNPRAAR 172 (259)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECS---SCEEEEEEECSCCT
T ss_pred HHHHHHHHHHHhhhccceeEEEEEEC---CEEEEEEcccccCC
Confidence 88999999999999 77789999853 37999999998884
|
| >d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.18 E-value=3.3e-11 Score=106.16 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=94.4
Q ss_pred HHHHHHHHHhccccCCCCcccc-CcEE-EEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc--
Q 019076 121 RQSMLQDVADLNLSDCNGKVRV-PRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 196 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~-P~~~-~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 196 (346)
|..|-++|++ +|||+ |.+. ++. +.+++.+ ....++||+|+||.. |+ +|.++.++.+.+++...
T Consensus 1 K~~~k~~~~~-------aGvP~~p~~~~~v~-s~~ea~~--~~~~ig~P~vvKP~~--~~-~s~gv~~v~~~~el~~a~~ 67 (214)
T d1ulza3 1 KARSKEVMKK-------AGVPVVPGSDGVLK-SLEEAKA--LAREIGYPVLLKATA--GG-GGRGIRICRNEEELVKNYE 67 (214)
T ss_dssp HHHHHHHHHH-------TTCCBCCBCSSSCC-CHHHHHH--HHHHHCSSEEEEECS--SS-SCCSCEEESSHHHHHHHHH
T ss_pred CHHHHHHHHH-------cCCCcCCCcCCCCC-CHHHHHH--HHHHcCCCEEEeecc--cc-CCccceeeeccHHHHHHHH
Confidence 4456677776 58986 7653 232 3333333 235689999999986 43 67899999999886432
Q ss_pred -----------CCCeEEEecccCCCeEEEEE-EEC-CE--EEEEEee--cCCCcccchhhcccceeecccccccccccCC
Q 019076 197 -----------EPPMLLQEFVNHGGILFKIY-IIG-ET--IKVVRRF--SLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 197 -----------~~p~v~QEfI~h~G~~~KV~-VvG-~~--v~~~~R~--Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
..++++||||. |..+-+. +++ ++ +..+... +.+... ..... ....
T Consensus 68 ~~~~~~~~~~~~~~viiEe~i~--G~e~~~~~~~~d~~~~~~~i~~~~~~~~~~~-------~~~~~---------~~~~ 129 (214)
T d1ulza3 68 QASREAEKAFGRGDLLLEKFIE--NPKHIEYQVLGDKHGNVIHLGERDCSIQRRN-------QKLVE---------IAPS 129 (214)
T ss_dssp HHHHHHHHTTSCCCEEEEECCC--SCEEEEEEEEECTTSCEEEEEEEEEEEEETT-------EEEEE---------EESC
T ss_pred HHHHHHHHhcCCCCceeheeec--CcceeeEEEEEcCCCeEEEEeccccccCccc-------cceeE---------Eeec
Confidence 35799999996 5434332 332 22 2222111 111100 00000 0000
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 260 ADLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
...++ .....+.+++.++.++||..- +.+|++.+. +| .+|+||+|.-||..
T Consensus 130 ~~~~~-----e~~~~~~~~~~~~~~~lg~~G~~~vef~~~~-dg-~~~~iEin~R~~~~ 181 (214)
T d1ulza3 130 LILTP-----EKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 181 (214)
T ss_dssp SSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred ccccH-----HHHHHHHHHHHHHHHHcCCccceEEEEEECC-CC-CEEEEEecCcCCCc
Confidence 01111 013567899999999999764 349999875 34 68999999999743
|
| >d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.5e-10 Score=97.76 Aligned_cols=163 Identities=7% Similarity=-0.064 Sum_probs=95.3
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhc----
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---- 195 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~---- 195 (346)
||+.|=+.|++ .|||||++..+. +.+++.+. ...++||+|+||..+.| .+.++.++ +.+++..
T Consensus 1 DK~~~K~~l~~-------~GIptp~~~~v~-s~~d~~~~--~~~ig~P~vvKp~~~~~--~~~~~~v~-~~~~~~~~~~~ 67 (198)
T d3etja3 1 DRLTQKQLFDK-------LHLPTAPWQLLA-ERSEWPAV--FDRLGELAIVKRRTGGY--DGRGQWRL-RANETEQLPAE 67 (198)
T ss_dssp SHHHHHHHHHH-------TTCCBCCEEEEC-CGGGHHHH--HHHHCSCEEEEESSSCB--TTBSEEEE-CGGGGGGSCGG
T ss_pred CHHHHHHHHHH-------CCcCCCCceEEC-CHHHHHHH--HHHcCCCeeeeeccccc--ccceeeec-chhhHHHHHhc
Confidence 78889999997 589999999995 44445443 34689999999986332 24444454 4444433
Q ss_pred cCCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHH
Q 019076 196 LEPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPL 274 (346)
Q Consensus 196 l~~p~v~QEfI~h~G~~~KV~VvG~~-v~~~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~ 274 (346)
....+++++|+. +++.+-+.++++. ..+.. ..+ . ........... .......++ .....
T Consensus 68 ~~~~~i~ee~i~-~~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~~~~~--------~~~p~~~~~-----~~~~~ 127 (198)
T d3etja3 68 CYGECIVEQGIN-FSGEVSLVGARGFDGSTVF--YPL-T---HNLHQDGILRT--------SVAFPQANA-----QQQAR 127 (198)
T ss_dssp GTTTEEEEECCC-CSEEEEEEEEECTTSCEEE--CCC-E---EEEEETTEEEE--------EEECSSCCH-----HHHHH
T ss_pred cCceEEEeeecc-ccccccceeeecccceeee--ece-e---eccccccceee--------eeecccccc-----chhhh
Confidence 257899999996 3444444444222 11100 000 0 00000000000 000111111 12345
Q ss_pred HHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 275 LERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 275 ~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
+.+++.++.++++..-. .+|++.+. +++||+|||.-|+=.|
T Consensus 128 ~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~v~Evn~Rp~~~g 169 (198)
T d3etja3 128 AEEMLSAIMQELGYVGVMAMECFVTP---QGLLINELAPRVHNSG 169 (198)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEEEEET---TEEEEEEEESSCCGGG
T ss_pred hhhhhhHHHHhhhhcccchhheeecC---CcEEEEEEECCccccc
Confidence 78899999998887644 49999874 3689999999997544
|
| >d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Acetyl-CoA carboxylase, BC-M subdomain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=7.5e-11 Score=107.71 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred hhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE----EEEEEe
Q 019076 161 EAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRR 227 (346)
Q Consensus 161 ~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~VvG~~----v~~~~R 227 (346)
...++||+|+||.. |+ +|.+|.+|+++++|.+. +.++++||||. +...+-+-++++. +.+..+
T Consensus 59 a~~igfPvvVKP~~--~~-gs~Gv~iv~~~~el~~a~~~a~~~s~~~~vlVEe~I~-G~~~~~~~~~~~~~~~~v~~~~~ 134 (267)
T d1w96a3 59 AKRIGFPVMIKASE--GG-GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGR 134 (267)
T ss_dssp HHHHCSSEEEEETT--CC-TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEE
T ss_pred HHhcCCCEEEEeec--cc-CCeeEEeecccchhhhhhhhhhhhcccchhhhhhhcc-chhhhhhhheeccCcceeeeccc
Confidence 35699999999986 33 57899999999998753 57899999995 2233333333332 222222
Q ss_pred ecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEE
Q 019076 228 FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFY 306 (346)
Q Consensus 228 ~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ 306 (346)
.-... .. ..... . ......++ .+....+.++|.++.+++|+.-. ++|++++..+| ++|
T Consensus 135 ~~~~~----~~-----~~~~~--~----~~~~~~~~-----~~~~~~~~~~a~~~~~~lg~~g~~~vd~~~~~~~g-~~y 193 (267)
T d1w96a3 135 DCSVQ----RR-----HQKII--E----EAPVTIAK-----AETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KFY 193 (267)
T ss_dssp EEEEE----ET-----TEEEE--E----EESCCSSC-----HHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CEE
T ss_pred ccccc----cc-----ccccc--c----eeecccCc-----hHHHHHHHHHHHHHHHHhCCccccceeeeeeCCCC-cEE
Confidence 21100 00 00000 0 00001111 01134678899999999998765 49999986555 799
Q ss_pred EEeccCCCCCC
Q 019076 307 VIDINYFPGYG 317 (346)
Q Consensus 307 ViDVN~fPg~~ 317 (346)
|||||.-+|-.
T Consensus 194 viEiNpR~~~~ 204 (267)
T d1w96a3 194 FLELNPRLQVE 204 (267)
T ss_dssp EEEEECSCCTT
T ss_pred EEEeccccccc
Confidence 99999998643
|
| >d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide transformylase PurT, domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.4e-10 Score=98.49 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=88.5
Q ss_pred CccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc-----------CCCeEEEecc
Q 019076 138 GKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----------EPPMLLQEFV 206 (346)
Q Consensus 138 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l-----------~~p~v~QEfI 206 (346)
.|||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.++.++.+.+++.+. ...++.|+|+
T Consensus 13 ~Gip~p~~~~v~-s~~dl~~~--~~~ig~PvVvKP~~--g~-gs~gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~ 86 (206)
T d1kjqa3 13 LQLPTSTYRFAD-SESLFREA--VADIGYPCIVKPVM--SS-SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVV 86 (206)
T ss_dssp SCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEEESC--C----CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECC
T ss_pred CCCCCCCCeEEC-CHHHHHHH--HHHhCCCEEEeecc--CC-ccCCceEEcCHHHHHHHHHHHHhhcccCcceeeeeecc
Confidence 599999999995 33334332 34689999999986 44 68999999999988754 3567888888
Q ss_pred cCCCeE-EEEEEECCEEEE---EEeecCCCcccchhhcccceeecccccccccccCCCCCCCCCCCCCChHHHHHHHHHH
Q 019076 207 NHGGIL-FKIYIIGETIKV---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLAREL 282 (346)
Q Consensus 207 ~h~G~~-~KV~VvG~~v~~---~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~l 282 (346)
...... +-++.-++.... ..+....+ . .... .......+ .....+.+++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~--------~~~~~~~~-----~~~~~~~~~~~~~ 142 (206)
T d1kjqa3 87 KFDFEITLLTVSAVDGVHFCAPVGHRQEDG----------D-YRES--------WQPQQMSP-----LALERAQEIARKV 142 (206)
T ss_dssp CCSEEEEEEEEEETTEEEECCCEEEEEETT----------E-EEEE--------EECCCCCH-----HHHHHHHHHHHHH
T ss_pred ccceeeeeeeeecCCCceeeccceeeeccC----------c-ccee--------eccccCCH-----HHHHHHHHHHHhh
Confidence 644222 222222332221 11111000 0 0000 00001110 0134478888999
Q ss_pred HHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019076 283 RHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGYGK 318 (346)
Q Consensus 283 ~~~lGl~l-fGvDvi~~~~~g~~~~ViDVN~fPg~~g 318 (346)
.+.++..- +++|+..+. +++||+|||.-||-.+
T Consensus 143 ~~~~~~~g~~~~e~~~~~---~~~~viEin~R~~~~~ 176 (206)
T d1kjqa3 143 VLALGGYGLFGVELFVCG---DEVIFSEVSPRPHDTG 176 (206)
T ss_dssp HHHHCSSEEEEEEEEEET---TEEEEEEEESSCCGGG
T ss_pred hhhhhceeeecccccccc---CCceEEEeecCccccc
Confidence 99998874 569998865 2689999999998654
|
| >d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Biotin carboxylase (BC), domain 2 species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.3e-10 Score=101.22 Aligned_cols=159 Identities=15% Similarity=0.210 Sum_probs=95.7
Q ss_pred CHHHHHHHHHhccccCCCCcccc-CcE--EEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc
Q 019076 120 NRQSMLQDVADLNLSDCNGKVRV-PRQ--MVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 196 (346)
Q Consensus 120 dR~~~~~~L~~l~~~~~~~~I~~-P~~--~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l 196 (346)
||..+-+.+++ +|||+ |-+ .+++ +.+++.+ ....++||+|+||.. |+ +|++|.++++.++|+..
T Consensus 1 dK~~~~~~~~~-------~GvP~vp~~~~~~~~-s~dea~~--~a~~iG~PvivKp~~--~~-ggrGv~~v~~~~el~~a 67 (216)
T d2j9ga3 1 DKVSAIAAMKK-------AGVPCVPGSDGPLGD-DMDKNRA--IAKRIGYPVIIKASG--GG-GGRGMRVVRGDAELAQS 67 (216)
T ss_dssp SHHHHHHHHHH-------HTCCBCCBCSSCCCS-CHHHHHH--HHHHHCSSEEEEEEE--EE-TTEEEEEECSHHHHHHH
T ss_pred CHHHHHHHHHH-------cCcCCCCCCCCCCCC-CHHHHHH--HHHHcCCCEEEeccc--cc-CCceeEeecchhHHHHH
Confidence 78888888887 47884 632 2221 2222222 345789999999986 33 58999999999887642
Q ss_pred -------------CCCeEEEecccCCCeEEEEEEECC--E--EEEEEee-cCCCcccchhhcccceeecccccccccccC
Q 019076 197 -------------EPPMLLQEFVNHGGILFKIYIIGE--T--IKVVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASAD 258 (346)
Q Consensus 197 -------------~~p~v~QEfI~h~G~~~KV~VvG~--~--v~~~~R~-Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~ 258 (346)
+.++++++||+. ....-+-++++ . +....|. +.... .. ..+. ..
T Consensus 68 ~~~~~~ea~~~~~~~~vlvE~~i~g-~~~~~~~i~~dg~~~~~~~~~~~~~~~~~------~~------~~~~----~~- 129 (216)
T d2j9ga3 68 ISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLADGQGNAIYLAERDCSMQRR------HQ------KVVE----EA- 129 (216)
T ss_dssp HHHHHHHTC--CCCCCEEEEECCSS-CEEEEEEEEEESSSCEEEEEEEEEEEEET------TE------EEEE----EE-
T ss_pred HHHHHHHHHHhcCCCceEeeeeecC-cccceeEEEEcCCCCeeeccccccCcccc------cC------CeEE----ec-
Confidence 368999999962 23344444433 1 2222221 11100 00 0000 00
Q ss_pred CC-CCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCCCC
Q 019076 259 DA-DLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGYG 317 (346)
Q Consensus 259 ~~-~~~~~~~~~p~~~~~~~lA~~l~~~lGl~lf-GvDvi~~~~~g~~~~ViDVN~fPg~~ 317 (346)
++ ..++ .....+.+++.++++.+|+.-. ++|++.++ +++||||||.-|+-.
T Consensus 130 P~~~~~~-----~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~---~~~~viEvnpR~~~~ 182 (216)
T d2j9ga3 130 PAPGITP-----ELRRYIGERCAKACVDIGYRGAGTFEFLFEN---GEFYFIEMNTRIQVE 182 (216)
T ss_dssp SCTTCCH-----HHHHHHHHHHHHHHHHTTCEEEEEEEEEEET---TEEEEEEEECSCCTT
T ss_pred cCccccc-----hhhhhhHHHHHHHHHHcCccCcceeEeEecC---CeEEEEeecCccccc
Confidence 11 1110 0134578899999999997655 49999974 379999999999743
|
| >d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: BC ATP-binding domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4e-09 Score=93.97 Aligned_cols=183 Identities=13% Similarity=0.057 Sum_probs=101.4
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCCcEEEecCcCCCCCCceeeEEEeChhhhhcc----
Q 019076 121 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---- 196 (346)
Q Consensus 121 R~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~fPvVvKP~~a~GS~~sh~m~lv~~~~~L~~l---- 196 (346)
|..+=+.+.+ ++||||++..+. +.+++.+.+ ..++||+|+||.. .+.|.+|.++.+.+++.+.
T Consensus 2 K~f~K~~~~~-------~~IPt~~~~~~~-~~~ea~~~~--~~~~~P~VvK~~~---~~~gkGv~i~~~~~e~~~a~~~~ 68 (224)
T d1gsoa3 2 KAFTKDFLAR-------HKIPTAEYQNFT-EVEPALAYL--REKGAPIVIKADG---LAAGKGVIVAMTLEEAEAAVHDM 68 (224)
T ss_dssp HHHHHHHHHH-------TTCCBCCEEEES-SSSHHHHHH--HHHCSSEEEEC---------CCEEEESSHHHHHHHHTTT
T ss_pred HHHHHHHHHH-------cCCCCCCceEeC-CHHHHHHHH--HHcCCCEEEEeCC---cccccceeeehhHHHHHHHHHHH
Confidence 4455566665 699999999885 344444433 3478999999863 3468899999998776542
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEE--CCEEEE------EEeecCCCcccchhhcccceeecccccccccccCC
Q 019076 197 ---------EPPMLLQEFVNHGGILFKIYII--GETIKV------VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 259 (346)
Q Consensus 197 ---------~~p~v~QEfI~h~G~~~KV~Vv--G~~v~~------~~R~Slp~~~~~~~~~~~g~~~~~~vs~~~~~~~~ 259 (346)
...+++|||+ .|..+-|+++ |+.+.. +.|-.-.+ ...+.|- .++.+ +
T Consensus 69 ~~~~~~~~~~~~vliEefl--~G~E~s~~~i~dg~~~~~~~~~~d~kr~~d~~-----~gp~tgg--------mg~~~-P 132 (224)
T d1gsoa3 69 LAGNAFGDAGHRIVIEEFL--DGEEASFIVMVDGEHVLPMATSQDHKRVGDKD-----TGPNTGG--------MGAYS-P 132 (224)
T ss_dssp TCSCCTTCTTCCEEEEECC--CEEEEEEEEEEESSCEEEEEEEEEEEEEETTT-----EEEEEEE--------EEEEE-S
T ss_pred HhcccccccCceEEeeccc--ccccceeEEEeccCceEeeecccccccccccc-----ccccccc--------ccccC-C
Confidence 2469999999 5999998888 555432 22211011 0111110 00000 0
Q ss_pred CCCCCCCCCCCChH---HHHHHHHHHHHHhCCcEeE---EEEEEecCcCCeEEEEeccCCCCCCCCccc----HHHHHHH
Q 019076 260 ADLDPGIAELPPRP---LLERLARELRHRLGLRLFN---IDMIREHGMRDVFYVIDINYFPGYGKMPDY----EHIFTDF 329 (346)
Q Consensus 260 ~~~~~~~~~~p~~~---~~~~lA~~l~~~lGl~lfG---vDvi~~~~~g~~~~ViDVN~fPg~~gv~~~----~~~l~~~ 329 (346)
....+ .++ ..+ .+.+.+.+..++.|+.+-| ++++++. .| ++||||+|.-+|--..... ..-|.+.
T Consensus 133 ~p~~~--~~l-~~~~~~~i~~~~~~~~~~~g~~~~G~l~~~~mit~-~G-~p~vlE~N~R~Gdpe~~~il~~l~~dl~e~ 207 (224)
T d1gsoa3 133 APVVT--DDV-HQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDK-QG-NPKVIEFNCRFGDLETQPIMLRMKSDLVEL 207 (224)
T ss_dssp CTTCC--HHH-HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TC-CEEEEEEESSCCTTTHHHHHHHBCSCHHHH
T ss_pred Cchhh--HHH-HHHHHHHHHHHHHHHHHhcCceeeeeeccceeeee-CC-CEEEEEEecCCCCCcceeehhhhcCCHHHH
Confidence 00000 000 011 1233446667788887655 6888875 33 5899999998863222211 1124555
Q ss_pred HHHHHHhh
Q 019076 330 LLSLEQSK 337 (346)
Q Consensus 330 l~~~i~~~ 337 (346)
+.+.+..+
T Consensus 208 ~~~~~~g~ 215 (224)
T d1gsoa3 208 CLAACESK 215 (224)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 55555554
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.49 E-value=6.2e-05 Score=56.65 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=44.3
Q ss_pred cCCcEEEEecCCC---CCCCCC----CccEEEEcccchhhHHHHHHHHHhCCCeeeeChHHHHHHhcC
Q 019076 60 NKGISFVAIDQNR---PLSDQG----PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHN 120 (346)
Q Consensus 60 ~~Gi~~v~id~~~---~l~~q~----~fDvilhK~t~~~~~~~l~~y~~~~p~v~VIDp~~ai~~l~d 120 (346)
++|+++..||+.+ .+.+++ .+|++|.|.......-.+.++.+ .-|++|+|++++|++|.|
T Consensus 22 ~rG~~~~~id~~~~~~~l~~~~~~~~~~D~Vi~R~~s~~~~~~v~~~lE-~~Gv~v~Ns~~aI~~c~D 88 (88)
T d1uc8a1 22 ALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLT-ALGIPVVNRPEVIEACGD 88 (88)
T ss_dssp HHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHH-HTTCCEESCHHHHHHHHB
T ss_pred HCCCeEEEEehhhcEEEccCCCCccCCCCEEEEeccccchHHHHHHHHH-HCCCcEeccHHHHHhhCC
Confidence 8999999999976 333333 37999999876433233334434 378999999999999976
|
| >d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.056 Score=46.68 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=41.2
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCC-CcEEEecC-cCCCCCCceeeEEEeChhhh
Q 019076 123 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPL-VVDGSAKSHELFLAYDRFSL 193 (346)
Q Consensus 123 ~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-fPvVvKP~-~a~GS~~sh~m~lv~~~~~L 193 (346)
..-++|++ .|||+|++.++.+ .+++.. ....++ ||+|+|.. .+.|...+.++.+..+.++.
T Consensus 7 eaK~lL~~-------yGIpvp~~~~a~s-~~ea~~--~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~ 69 (238)
T d2nu7b2 7 QAKQLFAR-------YGLPAPVGYACTT-PREAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDI 69 (238)
T ss_dssp HHHHHHHH-------TTCCCCCEEEESS-HHHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHH
T ss_pred HHHHHHHH-------cCCCCCCceEECC-HHHHHH--HHHHhCCCcEEEEEeecccccccceEEEeccccHHH
Confidence 34466665 6999999999853 332222 344578 59999963 23455677889999887664
|
| >d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Succinyl-CoA synthetase, beta-chain, N-terminal domain domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.57 E-value=0.14 Score=44.15 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCChhhHHHhhCCCC-cEEEecCcCCCC-C-------CceeeEEEeChhh
Q 019076 122 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGS-A-------KSHELFLAYDRFS 192 (346)
Q Consensus 122 ~~~~~~L~~l~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~f-PvVvKP~~a~GS-~-------~sh~m~lv~~~~~ 192 (346)
+..-++|++ .|||+|++.++.+ .+++.+ ....++| |+|+|+.+..|. . ..-++.++.|.++
T Consensus 7 ~eaK~lL~~-------yGIpvp~~~~a~s-~~ea~~--~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee 76 (246)
T d1eucb2 7 YQSKKLMSD-------NGVKVQRFFVADT-ANEALE--AAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEV 76 (246)
T ss_dssp HHHHHHHHT-------TTCCCCCEEEESS-HHHHHH--HHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHH
T ss_pred HHHHHHHHH-------cCCCCCCeeEECC-HHHHHH--HHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhH
Confidence 444566774 6999999999853 332222 2346885 899998654322 1 1246677888877
Q ss_pred hhcc------------C--------CCeEEEecccCCCeEEEEEEECC
Q 019076 193 LSEL------------E--------PPMLLQEFVNHGGILFKIYIIGE 220 (346)
Q Consensus 193 L~~l------------~--------~p~v~QEfI~h~G~~~KV~VvG~ 220 (346)
+.+. . .-+++|+.+++ |+.+=+.+..|
T Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~v~~vlve~~~~~-~~E~~vg~~~D 123 (246)
T d1eucb2 77 VGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDI-SRETYLAILMD 123 (246)
T ss_dssp HHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCC-SEEEEEEEEEE
T ss_pred HHHHhhhhhcchhhhhhccccccccccceehhcccc-cceeeeeeeec
Confidence 6431 0 23788888874 55555555543
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