Citrus Sinensis ID: 019185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MLLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccEccccccccEccccccccHHHcHHccccccccccccHHHHHccccHHHccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHHcccccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mllqmnlcssfslkyhplqqngtvktfqsplTQIYGLanrresnkysvkgsiqssfcltnnkignnedmmnryhkplkkstvpmalqddsatksqnenivSTSFLDFLTKKLDAFYrlsrpyawTSIIVGILsssllpiqsladltpTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAaysidlpllrwkaSPLMAAVAIVIGNGINNVLPYFLHVQKYvlgrpvvftkpLLFAVAFSAIFSIVLSLLkdipdvegdkksgirtlpvilGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Flexible Loop (DISEMBL)
MLLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESnkysvkgsiqssfcltnnkignneDMMNRYHKPLKKSTVPMALQDDSatksqnenivsTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDipdvegdkksgirtlpvilgkERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Low Complexity Region (SEG)
MLLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTsiivgilsssllpiqslADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Disordered region (IsUnstruct)
******LCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLAN***********SIQSSFCLTN**************************************IVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW*
Disordered Region (DISOPRED)
*******CSSFSLKYHPLQ*******************************************************************************************KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Disordered Region (DISEMBL)
MLLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPLKKSTVPMALQ*********ENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Disordered Region (DISPRO)
*LLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRY****************************TSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLQMNLCSSFSLKYHPLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.739	0.648	0.402	3e-55
B7FA90	404	Probable homogentisate ph	yes	no	0.921	0.787	0.362	3e-54
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.701	0.590	0.377	2e-48
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.791	0.667	0.349	5e-40
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.663	0.593	0.282	3e-14
Q0D576	379	Probable homogentisate ph	no	no	0.643	0.585	0.261	4e-10
Q18J00	286	Digeranylgeranylglyceryl	yes	no	0.228	0.276	0.313	8e-05
Q3INH7	277	Digeranylgeranylglyceryl	no	no	0.2	0.249	0.32	0.0004

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 166/283 (58%), Gaps = 28/283 (9%)

Query: 90  SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF 149
           +AT  Q E   S S        LDAFYR SRP+     ++ ILS S L ++ ++D++P  
Sbjct: 75  NATAGQPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLL 134

Query: 150 LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------S 181
              +L+ +V  +MMNI++V +NQLSD+ IDK                            S
Sbjct: 135 FTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMS 194

Query: 182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
             +G ++ S PL  AL +  +LG AYSI+LPLLRWK   L+AA+ I+    I   + ++L
Sbjct: 195 FWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYL 254

Query: 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
           H+Q +V GRP++FT+PL+FA AF + FS+V++L KDIPD+EGDK  GIR+  V LG++RV
Sbjct: 255 HIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Query: 302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
                 +L MAYA A L G  SP +  K+++++GH +L   LW
Sbjct: 315 FWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 357

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 188/356 (52%), Gaps = 38/356 (10%)

Query: 17  PLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKP 76
           PL+++     F  PL  I+   N +     S + +   SF       G         H+P
Sbjct: 23  PLRRD----HFLPPLCSIH--RNGKRPVSLSSQRTQGPSFDQCQKFFGWKSSHHRIPHRP 76

Query: 77  LKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSL 136
              S    A       +S  E   S+S    ++  LDAFYR SRP+      + I+S SL
Sbjct: 77  TSSS----ADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSL 132

Query: 137 LPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------- 180
           L +++L+D++P FL  +L+ +V  + MNI++V +NQL DI IDK                
Sbjct: 133 LAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPA 192

Query: 181 ------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIV 228
                       S  +G  + S PL +AL +  ILG AYSI+LP LRWK S ++AA+ I+
Sbjct: 193 TGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCIL 252

Query: 229 IGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSG 288
               +   L +FLH+Q +V  RP VFT+PL+FA AF   FS+V++L KDIPD+EGD+  G
Sbjct: 253 AVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312

Query: 289 IRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
           I++  V LG+++V  +  G+L MAY  A L G  S  L  K  T++GH++L  ILW
Sbjct: 313 IKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILW 368

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 156/270 (57%), Gaps = 28/270 (10%)

Query: 103 SFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIM 162
           S  D +   LD FY+  RPYA  +I++G    SL+ ++ L+DL+  F I  L+ +V  I 
Sbjct: 105 SIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVIC 164

Query: 163 MNIFVVAINQLSDIAIDK------------------------SLAMGV----MLRSPPLV 194
           ++IF V +NQL DI IDK                        SL +G+    ++ S PL 
Sbjct: 165 IHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLF 224

Query: 195 IALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVF 254
             + + C++ +AY++DLPLLRWK  P++ A+  +    +   L +FLH+Q  V  RP  F
Sbjct: 225 WTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTF 284

Query: 255 TKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314
            +PL+F  A  +I++IV++L KDIPD+EGD+K GI++L + LG +RV  +   +L M Y 
Sbjct: 285 PRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYG 344

Query: 315 SAALAGVFSPILLCKLVTMIGHSVLGFILW 344
              L G  SPIL  K++T++GH+VL  +LW
Sbjct: 345 VTILVGATSPILWSKIITVLGHAVLASVLW 374

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 156/309 (50%), Gaps = 36/309 (11%)

Query: 64  GNNEDMMNRYHKPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYA 123
           G+     NR       S  P+  +   A  S  +NI     LD +   L AFY  S PY 
Sbjct: 73  GSTYQECNRKFVVKAISKQPLGFE---AHASNPKNI-----LDSVKNVLSAFYWFSYPYT 124

Query: 124 WTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--- 180
              I +   SSSLL ++ L+D++ +FLI VL+ ++P + + I++  +NQL D+ IDK   
Sbjct: 125 MIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQLYDLEIDKINK 184

Query: 181 ----------SLAMGVMLR---------------SPPLVIALVLRCILGAAYSIDLPLLR 215
                     S   GV++                S PL+  LV+      AYSID+PLLR
Sbjct: 185 PHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLR 244

Query: 216 WKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLL 275
           WK  P +AA+ ++    +   + YF H+Q  VL RP+ F + L F VAF   +S+ L+L 
Sbjct: 245 WKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALS 304

Query: 276 KDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIG 335
           KDIPDVEGDK+ GI +  V LG++R   +      MA+    LAG        K+ T +G
Sbjct: 305 KDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMG 364

Query: 336 HSVLGFILW 344
           ++VL  ILW
Sbjct: 365 NAVLASILW 373

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 40/269 (14%)

Query: 105 LDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTP----TFLIEVLKPIVPT 160
           LD + +  +A +R  RP+   +I    L S+ L  ++L + T     + +++ L  ++  
Sbjct: 84  LDRIARFQNACWRFLRPH---TIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLAL 140

Query: 161 IMMNIFVVAINQLSDIAIDK------SLAMG---------------------VMLRSPPL 193
           I  N ++V INQ+ DI IDK       +A G                     V     P 
Sbjct: 141 ICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPF 200

Query: 194 VIALV-LRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG-INNVLPYFLHVQKYVLGRP 251
           + +L  L   LG  YS+  P LR K  P+ A + I    G + N   Y  H  +  LG P
Sbjct: 201 ITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY--HATRAALGLP 256

Query: 252 VVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311
             ++ P+ F  +F  +F++V+++ KD+PDVEGD+K  I TL   LG   +  + +G+LL+
Sbjct: 257 FQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLV 316

Query: 312 AYASAALAGVFSPILLCKLVTMIGHSVLG 340
            Y SA     + P +    + +  H +L 
Sbjct: 317 NYVSAISLAFYMPQVFRGSLMIPAHVILA 345

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%)

Query: 113 DAFYRLSRPYAWTSIIVG---ILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVA 169
           D+ +R  RP+      +G   +++ +L+    L +    F  +    +V  I  N ++V 
Sbjct: 85  DSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVF--KAFYGLVALICGNGYIVG 142

Query: 170 INQLSDIAIDK------SLAMG---------------------VMLRSPPLVIAL-VLRC 201
           INQ+ DI IDK       +A G                     V+    P + +L  L  
Sbjct: 143 INQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYCLGL 202

Query: 202 ILGAAYSIDLPLLRWKASPLMAAVAIVIGNG-INNVLPYFLHVQKYVLGRPVVFTKPLLF 260
            LG  YS+  P  R K  P+ A + I    G + N   Y  +  +  LG    ++ P+ F
Sbjct: 203 FLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY--YATRAALGLTFQWSSPVAF 258

Query: 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320
              F  +F++V+++ KD+PDVEGD+K  I TL   LG   +  + +G+L+  Y +A    
Sbjct: 259 ITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVA 318

Query: 321 VFSPILLCKLVTMIGHSVLG 340
              P    + V +  H+ L 
Sbjct: 319 FLMPQAFRRTVMVPVHAALA 338

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 7/86 (8%)

Query: 232 GINNVLPYFLHVQKYV-----LGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKK 286
           G+ N +  +L    ++     +GR   F   +LF +A  A+ +    ++KDI D++GD+K
Sbjct: 135 GVGNAIVAYLTGSTFLFGAAAIGRITDFGVVVLFILA--ALATATREIIKDIEDLDGDRK 192

Query: 287 SGIRTLPVILGKERVLSMSTGILLMA 312
            G++TLP+++G      ++TG+LL+A
Sbjct: 193 EGLQTLPIVIGVTPAYRVATGVLLVA 218

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Haloquadratum walsbyi (strain DSM 16790) (taxid: 362976)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 232 GINNVLPYFLHVQKYVLGRPVVFTK----PLLFAVAFSAIFSIVLSLLKDIPDVEGDKKS 287
           G+ N L  +L    ++ G   V        +LFA+A  A  ++   ++KD+ D++GD+  
Sbjct: 129 GVGNALVAYLTGSTFLYGGAAVGGDLAAVVVLFALAACA--TMAREIVKDVEDIDGDRAE 186

Query: 288 GIRTLPVILGKERVL 302
           G+RTLP+++G+ R L
Sbjct: 187 GLRTLPIVIGERRSL 201

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) (taxid: 348780)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
295656253	401	homogentisate geranylgeranyl transferase	0.779	0.670	0.424	2e-58
359476155	397	PREDICTED: probable homogentisate phytyl	0.898	0.780	0.352	6e-57
296082088	398	unnamed protein product [Vitis vinifera]	0.869	0.753	0.360	1e-56
224143266	284	predicted protein [Populus trichocarpa]	0.675	0.820	0.429	3e-56
219842170	411	homogentisate geranylgeranyl transferase	0.773	0.649	0.4	2e-55
171190284	317	homogentisate geranylgeranyl transferase	0.721	0.785	0.436	1e-54
377657555	394	homogentisate phytyltransferase [Brassic	0.739	0.647	0.409	6e-54
299507806	393	homogentisate phytyltransferase [Solanum	0.739	0.648	0.402	2e-53
297836742	393	predicted protein [Arabidopsis lyrata su	0.895	0.786	0.356	2e-53
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.739	0.648	0.402	2e-53

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 184/299 (61%), Gaps = 30/299 (10%)

Query: 75  KPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSS 134
           K L   T+   L+ +   +S+++ +  T     L +K+DAFYR SRP+     I+GI S 
Sbjct: 70  KKLPGQTLCGTLEHEFVIESKDDQL--TLLQGDLWRKIDAFYRFSRPHTIIGTIIGITSV 127

Query: 135 SLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------------- 180
           SLLP+ S+ DL+P F +  LK ++P+I MNI+VV +NQL D+ IDK              
Sbjct: 128 SLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKVNKPNLPLASGEYS 187

Query: 181 --------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVA 226
                         S AMG++ +SPP+  AL++  + G+AYS++LPLLRWK +  +AA +
Sbjct: 188 MGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFS 247

Query: 227 IVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKK 286
           I++   I   L +F H+QKYVLGRP+VF + L FA    ++F+ V++L KDIPDV+GD+ 
Sbjct: 248 ILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRD 307

Query: 287 SGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK 345
            GI++  V LG++RV  +  GILL+AYASA + G  S  LL KLVT+IGH  L  ILW+
Sbjct: 308 FGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWR 366

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 202/355 (56%), Gaps = 45/355 (12%)

Query: 18  LQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPL 77
           LQQ G V   Q P   +      ++++ +       + F   +    ++ ++ +   K  
Sbjct: 24  LQQQGCV---QPPQLSV------KKTHNFLKSCYCSNPFKCCSEGFSSSVNIQHLTFKSH 74

Query: 78  KKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLL 137
           K++ + ++ +    +K +++N VS        K+L AFY  SRP+     ++GI S SLL
Sbjct: 75  KRNPIHVSSEYGYPSKPEDQNHVS--------KQLRAFYLFSRPHTIIGTVIGITSVSLL 126

Query: 138 PIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------- 180
           P+++++DL+P F + +LK +VP+++MNI+VV +NQ+ D+ IDK                 
Sbjct: 127 PLETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMET 186

Query: 181 -----------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVI 229
                      S+ MG+M +SPPL  AL++  +LG AYSI++PLLRWK  PL+AA  I+I
Sbjct: 187 GSQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILI 246

Query: 230 GNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGI 289
              I   L +F H+QK+VLGR +V+TK ++F VAF   FS V++L KDIPDV+GD++ GI
Sbjct: 247 VRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGI 306

Query: 290 RTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
           ++  V LG+++V  +   +LLMAY +A + G  S  +  K  T+  H  L  +LW
Sbjct: 307 QSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLW 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 200/344 (58%), Gaps = 44/344 (12%)

Query: 37  LANRRESNKYSVKGS---IQSSFC-----LTNNKIGNNEDMMNRYHKPLKKSTVPMALQD 88
           LA   +  + SVK +   ++S +C       +    ++ ++ +   K  K++ + ++ + 
Sbjct: 2   LAGCVQPPQLSVKKTHNFLKSCYCSNPFKCCSEGFSSSVNIQHLTFKSHKRNPIHVSSEY 61

Query: 89  DSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPT 148
              +K +++N VS        K+L AFY  SRP+     ++GI S SLLP+++++DL+P 
Sbjct: 62  GYPSKPEDQNHVS--------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLETISDLSPA 113

Query: 149 FLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------------------- 180
           F + +LK +VP+++MNI+VV +NQ+ D+ IDK                            
Sbjct: 114 FFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVFISLLM 173

Query: 181 SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF 240
           S+ MG+M +SPPL  AL++  +LG AYSI++PLLRWK  PL+AA  I+I   I   L +F
Sbjct: 174 SVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFF 233

Query: 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKER 300
            H+QK+VLGR +V+TK ++F VAF   FS V++L KDIPDV+GD++ GI++  V LG+++
Sbjct: 234 AHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKK 293

Query: 301 VLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
           V  +   +LLMAY +A + G  S  +  K  T+  H  L  +LW
Sbjct: 294 VFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLW 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 164/261 (62%), Gaps = 28/261 (10%)

Query: 112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAIN 171
           L +FY+ SRP+     ++GI S SLLP++++++L+PTF + +LK +VP+++MNI+VV +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 172 QLSDIAIDK----------------------------SLAMGVMLRSPPLVIALVLRCIL 203
           QL D+ IDK                            S AMG+M +SP L  AL++ C+L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 204 GAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVA 263
           G+ YSI+LP LRWK    +AA  I+I   I   L +F+H+QK+VLG+  V T+ L+FA A
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFS 323
           F   FS V++L KDIPDV+GD+  GI++  V LG+ERV  +   +LL+AY +A + G  S
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 324 PILLCKLVTMIGHSVLGFILW 344
             L  K +T++GH  L FILW
Sbjct: 241 TFLPSKFITILGHCTLAFILW 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 184/300 (61%), Gaps = 33/300 (11%)

Query: 78  KKSTVP-MALQDD--SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSS 134
           +K+ +P + LQ++  +      ++I S+S    + + L++ Y+ SRP+     I+GI S 
Sbjct: 76  RKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIGTIIGITSV 135

Query: 135 SLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------------- 180
           SLLP++++ DL+PT+ I +LK +VP+++MNI+VV +NQL D+ IDK              
Sbjct: 136 SLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYLPLASGKFS 195

Query: 181 --------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVA 226
                         SL MG+  +SPPL+ AL++   LG+ YSI+LP LRWK    +AA  
Sbjct: 196 MATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASC 255

Query: 227 IVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKK 286
           I+I   +   L +F+H+QK+VLG+ +   + L+FA AF   FS  ++L KDIPDVEGD+ 
Sbjct: 256 ILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRD 315

Query: 287 SGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSP--ILLCKLVTMIGHSVLGFILW 344
            GI++  V LG+ERVL +   +LL+AY +A + G  SP  +L  KL+TMIGHS + +ILW
Sbjct: 316 YGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILW 375

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/277 (43%), Positives = 168/277 (60%), Gaps = 28/277 (10%)

Query: 96  NENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLK 155
           N+  VS      L +K+DAFYR +RP+     IVGI S SLLP+ S  DL+P F + +LK
Sbjct: 5   NKQEVSPPLSQNLWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLK 64

Query: 156 PIVPTIMMNIFVVAINQLSDIAIDK----------------------------SLAMGVM 187
            ++P + +NI+VV +NQL D+ IDK                            S+ MG+M
Sbjct: 65  VMIPIVCVNIYVVGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIM 124

Query: 188 LRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYV 247
            +SPP++  L++    G AYSID+PL RWK +  +AA+ IVI   I   L  F H+Q+YV
Sbjct: 125 FQSPPVLYCLLVCFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYV 184

Query: 248 LGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTG 307
           LGRPV+F++ L FA+    +F  V++L KDIPDV+GD+  GI+T+ V LGK+RV  +   
Sbjct: 185 LGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCIT 244

Query: 308 ILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
           ILL+AY SA + G  S +LL KLVT+ GH +L  ILW
Sbjct: 245 ILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILW 281

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 116/283 (40%), Positives = 166/283 (58%), Gaps = 28/283 (9%)

Query: 90  SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF 149
           +AT  Q E     S  +     LDAFYR SRP+     ++ ILS S L ++ ++D++P  
Sbjct: 76  NATTGQPEAFDPKSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLL 135

Query: 150 LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------S 181
              +L+ +V  +MMNI++V +NQLSD+ IDK                            S
Sbjct: 136 FTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMS 195

Query: 182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
             +G ++ S PL  AL +  ILG AYSI+LPLLRWK   L+AA+ I+    I   + ++L
Sbjct: 196 FWLGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYL 255

Query: 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
           H+Q +V GRPV+FT+PL+FA AF + FS+V++L KDIPD+EGDK  GIR+  V LG+ERV
Sbjct: 256 HIQTHVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERV 315

Query: 302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
                 +L MAYA A L G  SP +  K+++++GH +L   LW
Sbjct: 316 FWTCVSLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 358

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299507806|gb|ADJ21814.1| homogentisate phytyltransferase [Solanum tuberosum]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 166/283 (58%), Gaps = 28/283 (9%)

Query: 90  SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF 149
           +AT  Q E   S S        LDAFYR SRP+     ++ ILS S L ++ ++D++P  
Sbjct: 75  NATAGQPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLL 134

Query: 150 LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------S 181
              +L+ +V  +MMNI++V +NQLSD+ IDK                            S
Sbjct: 135 FTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAMVASFSIMS 194

Query: 182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
             +G ++ S PL  AL +  +LG AYSI+LPLLRWK   L+AA+ I+    I   + ++L
Sbjct: 195 FWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYL 254

Query: 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
           H+Q +V GRP++FT+PL+FA AF + FS+V++L KDIPD+EGDK  GIR+  V LG++RV
Sbjct: 255 HIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Query: 302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
                 +L MAYA A L G  SP +  K+++++GH +L   LW
Sbjct: 315 FWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 357

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 188/342 (54%), Gaps = 33/342 (9%)

Query: 36  GLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKPLKKSTVPMALQDDS----- 90
           G   R+++ K      I+   C ++  +   +   N      ++S++ +  +D S     
Sbjct: 16  GFCWRKQNLKLHSLSEIRVLRCDSSKVVAKPKFRNNLVRLDGQESSLLLYSKDKSRFRVN 75

Query: 91  ATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFL 150
           AT  Q E   + S        LDAFYR SRP+     ++ ILS S L ++ ++D++P   
Sbjct: 76  ATAGQPEAFDANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLF 135

Query: 151 IEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------SL 182
             +L+ +V  +MMNI++V +NQLSD+ IDK                            S 
Sbjct: 136 TGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSF 195

Query: 183 AMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLH 242
            +G ++ S PL  AL +  +LG AYSI+LPLLRWK   L+AA+ I+    I   + ++LH
Sbjct: 196 WLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query: 243 VQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVL 302
           +Q +V GRP++FT+PL+FA AF + FS+V++L KDIPD+EGDK  GIR+  V LG++RV 
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query: 303 SMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
                +L MAYA A L G  SP +  K+++++GH +L   LW
Sbjct: 316 WTCISLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/283 (40%), Positives = 166/283 (58%), Gaps = 28/283 (9%)

Query: 90  SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF 149
           +AT  Q E   S S        LDAFYR SRP+     ++ ILS S L ++ ++D++P  
Sbjct: 75  NATAGQPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLL 134

Query: 150 LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------S 181
              +L+ +V  +MMNI++V +NQLSD+ IDK                            S
Sbjct: 135 FTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMS 194

Query: 182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
             +G ++ S PL  AL +  +LG AYSI+LPLLRWK   L+AA+ I+    I   + ++L
Sbjct: 195 FWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYL 254

Query: 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
           H+Q +V GRP++FT+PL+FA AF + FS+V++L KDIPD+EGDK  GIR+  V LG++RV
Sbjct: 255 HIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Query: 302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
                 +L MAYA A L G  SP +  K+++++GH +L   LW
Sbjct: 315 FWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.556	0.488	0.432	2.7e-36
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.559	0.474	0.373	4.6e-34
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.472	0.397	0.411	1.1e-32
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.417	0.366	0.326	6.2e-16

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 84/194 (43%), Positives = 123/194 (63%)

Query:   152 EVLKPIVPTIMMNIFV-VAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSID 210
             +V KP +P       V   I  ++  +I  S  +G ++ S PL  AL +  +LG AYSI+
Sbjct:   165 KVNKPYLPLASGEYSVNTGIAIVASFSI-MSFWLGWIVGSWPLFWALFVSFMLGTAYSIN 223

Query:   211 LPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSI 270
             LPLLRWK   L+AA+ I+    I   + ++LH+Q +V GRP++FT+PL+FA AF + FS+
Sbjct:   224 LPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSV 283

Query:   271 VLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKL 330
             V++L KDIPD+EGDK  GIR+  V LG++RV      +L MAYA A L G  SP +  K+
Sbjct:   284 VIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKV 343

Query:   331 VTMIGHSVLGFILW 344
             ++++GH +L   LW
Sbjct:   344 ISVVGHVILATTLW 357

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 72/193 (37%), Positives = 118/193 (61%)

Query:   152 EVLKPIVPTIMMNIFVVAINQLSDIAIDKSLAMGVMLRSPPLVIALVLRCILGAAYSIDL 211
             ++ KP +P    N+    +  ++  ++   L    ++ S PL   + + C+  AAY++DL
Sbjct:   179 KINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDL 238

Query:   212 PLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIV 271
             PLLRWK  P++ A++ +    +   L +FLH+Q  V  RP  F +PL+F  A  +I++IV
Sbjct:   239 PLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIV 298

Query:   272 LSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLV 331
             ++L KDIPD+EGD+K GI++L + LG +RV  +   +L MAY    L G  SPIL  K++
Sbjct:   299 IALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKII 358

Query:   332 TMIGHSVLGFILW 344
             T++GH++L  +LW
Sbjct:   359 TVLGHAILASVLW 371

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 67/163 (41%), Positives = 104/163 (63%)

Query:   182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
             L    ++ S PL   + + C++ +AY++DLPLLRWK  P++ A+  +    +   L +FL
Sbjct:   212 LGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFL 271

Query:   242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
             H+Q  V  RP  F +PL+F  A  +I++IV++L KDIPD+EGD+K GI++L + LG +RV
Sbjct:   272 HMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

Query:   302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
               +   +L M Y    L G  SPIL  K++T++GH+VL  +LW
Sbjct:   332 FWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLW 374

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
 Identities = 49/150 (32%), Positives = 78/150 (52%)

Query:   192 PLVIALV-LRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG-INNVLPYFLHVQKYVLG 249
             P + +L  L   LG  YS+  P LR K  P+ A + I    G + N   Y  H  +  LG
Sbjct:   206 PFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY--HATRAALG 261

Query:   250 RPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL 309
              P  ++ P+ F  +F  +F++V+++ KD+PDVEGD+K  I TL   LG   +  + +G+L
Sbjct:   262 LPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLL 321

Query:   310 LMAYASAALAGVFSPILLCKLVTMIGHSVL 339
             L+ Y SA     + P +    + +  H +L
Sbjct:   322 LVNYVSAISLAFYMPQVFRGSLMIPAHVIL 351

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	5e-80
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	5e-31
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	6e-11
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	9e-09
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-08
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	3e-08
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	1e-04
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	3e-04
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	4e-04
PRK13591	307	PRK13591, ubiA, prenyltransferase; Provisional	0.002
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	0.003

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  245 bits (627), Expect = 5e-80
 Identities = 109/244 (44%), Positives = 150/244 (61%), Gaps = 28/244 (11%)

Query: 129 VGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------- 180
           +GI S SLL ++SL+D +P F   +L+ +VP ++MNI++V +NQL DI IDK        
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 181 --------------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASP 220
                               S  MG ++ S PL  AL +  +LG AYSI+LPLLRWK S 
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 221 LMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPD 280
           + AA  I+    +   L +FLH+Q +VLGRP VFT+PL+FA AF   FS+V++L KDIPD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 281 VEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLG 340
           VEGD+  GIR+  V LG++RV  +   +L MAYA+A L G  S  L  K++T++GH +L 
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 341 FILW 344
            ILW
Sbjct: 241 SILW 244

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  118 bits (299), Expect = 5e-31
 Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 35/274 (12%)

Query: 101 STSFLDFLTKKLDAFYRLSRP---YAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPI 157
             + L  +T  L A ++ SRP      +  ++G+   ++    +   L    L  +L   
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA--NLGLLLGAW 59

Query: 158 VPTIMMNIFVVAINQLSDIAIDK-------------SLAMGVMLRSPPLVIALVLRCIL- 203
           +  +  N+++V +NQL+DI ID+             S   G  +     ++AL+L  +L 
Sbjct: 60  IACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLG 119

Query: 204 -------------GAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGR 250
                        G AYS  LP +R K  PL+AA+ I    G+   L  FLH Q ++LG 
Sbjct: 120 PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLLGG 176

Query: 251 PVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILL 310
            V+    +     F  +F+  +++ KDIPD+EGD++  I T  + LGK+ V  +S  +L 
Sbjct: 177 SVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT 236

Query: 311 MAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
             Y      G+ S   +     ++ H +L  +LW
Sbjct: 237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLW 270

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 51/252 (20%)

Query: 124 WTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--- 180
               ++ +L+   L    + DL    L+ +       +++      +N   D  ID    
Sbjct: 1   LPLALLPVLAGLALAAGGVLDLLLLLLLLLA-----LLLLQAAGNVLNDYFDYEIDADNP 55

Query: 181 ---------------------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPL 213
                                       L + ++L    L++ L+   +LG  YS   P 
Sbjct: 56  NKPDRPLPSGRISPREALLLGLALLLLGLLLALLLGPLLLLLGLLG-LLLGLLYS---PP 111

Query: 214 LRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLS 273
           LR K  PL+  + + +  G+  +L        Y +G  +    PLL       + S+ + 
Sbjct: 112 LRLKRRPLLGELVVGLAFGLLILLGA------YAVGGDIPS--PLLLLALPVFLLSLAIL 163

Query: 274 LLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTM 333
           L  DI DVEGD+K+GIRTLPV LG++R L     +  +  A+A L  +   +LL  L+ +
Sbjct: 164 LTNDIRDVEGDRKAGIRTLPVRLGRKRAL----ALYALLLAAALLLLLLLLLLLAPLLLL 219

Query: 334 IGHSVLGFILWK 345
           +   +L   L  
Sbjct: 220 LAVLLLALALLV 231

Length = 259

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 54/245 (22%)

Query: 117 RLSRPYAWT----SIIVGILSSSLLPIQSLADL-TPTFLIEVLKPIVPTIMMNIFVVAIN 171
            LSRP  W      ++VG+         S+ADL +P  +      + P    N+F+  +N
Sbjct: 13  VLSRPRFWLYLAGPVVVGVA----YAADSVADLFSPAAVALFAYFLFPA---NVFLYGVN 65

Query: 172 QLSDIAIDK---------------------------SLAMGVMLRSPPL-VIALVLRCIL 203
            + D   D+                           +LA+  +L  PP    AL+   +L
Sbjct: 66  DVFDADTDELNPKKDREREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVL 125

Query: 204 GAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVA 263
              YS   P LR+K +P++ +++    NG+  +LP       Y L   V  + P L AVA
Sbjct: 126 SVEYSA--PPLRFKTTPVLDSLS----NGLY-ILPGVA---AYAL---VSGSLPPLLAVA 172

Query: 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGI-LLMAYASAALAGVF 322
              ++++ +     IPD+E D+ +GIRT   +LG+ R  +      LL A A AA+    
Sbjct: 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDLRL 232

Query: 323 SPILL 327
             +LL
Sbjct: 233 GALLL 237

Length = 282

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 187 MLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKY 246
           ++  P   +  ++  ILG  YS+     R K  PL   + + +   ++ ++    + Q  
Sbjct: 100 VIGGPKFALIFIIPLILGILYSVFFKR-RLKRIPLFKNLVVSLLWALSPLILGVYYYQLT 158

Query: 247 VLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMST 306
           +          LL    F  + S +  ++ DI D+EGD+KSG++TLP++LGKER L    
Sbjct: 159 I-------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLL 211

Query: 307 GI 308
            +
Sbjct: 212 IL 213

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 117 RLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI 176
           RL RP     +++  L   LL    L  L    L       +   +       IN L+D 
Sbjct: 18  RLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLA-----FLAFFLARSAGYVINDLADR 72

Query: 177 AIDK--------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIV 228
            ID+         L  G +  S    + L +  +L         LL   A  L  A  ++
Sbjct: 73  EIDRINPRTKNRPLPSGRV--SVKEALLLAI--LLLLLGLALALLLNPLAFLLSLAALVL 128

Query: 229 ------------IGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLK 276
                       +   +  +      +         +     L     + ++++   ++ 
Sbjct: 129 ALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLL-LAAILWTLGYDIIY 187

Query: 277 DIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILL 327
            I D+EGD+K+G+++LPV+ G ++ L+++  +LL A A   L G+ + +L 
Sbjct: 188 AIQDIEGDRKAGLKSLPVLFGIKKALALALLLLL-ASALLVLLGLLAGLLG 237

Length = 289

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)

Query: 169 AINQLSDIAIDK------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLM 222
           AIN   D  ID+       +  G +     L  +++L    G A +  LP L        
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILL-FAAGVALAFLLPPL-------- 106

Query: 223 AAVAIVIGN---------------GINNVLPYFLHVQKYVLGRPVVFTKPL-----LFAV 262
             +AI + N               G+ N    +L    ++ G   V T+ L     LFA+
Sbjct: 107 -CLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFAL 165

Query: 263 AFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318
           A  A  +    ++KD+ D+EGD+  G RTLP+++G  + L ++   LL+A A++ L
Sbjct: 166 AALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Length = 276

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query: 274 LLKDIPDVEGDKKSGIRTLPVILGKER 300
           ++KDI D+EGDK  G +TLP+I+GK+R
Sbjct: 172 IMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 18/143 (12%)

Query: 181 SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF 240
            L + ++L +  +V+  V+  +L   YS  +P ++ K +  +   A+ +       LP+ 
Sbjct: 96  GLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSY---EGLPWM 150

Query: 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIV---LSLLKDIPDVEGDKKSGIRTLPVILG 297
                       +F      +V  + I+S+    +  L D   VEGD++ G+R+LPV++G
Sbjct: 151 --------AGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIG 202

Query: 298 KERVLSMSTGILLMAYASAALAG 320
            +R   ++  +  +    A + G
Sbjct: 203 VKRAAIVA--VTTINVFQAMVIG 223

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 258 LLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317
           LL A+AF  + ++   ++KDI DVEGD+  G RTL ++ G++    ++    L   A   
Sbjct: 159 LLAAMAF--LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIA--AALFILAVLL 214

Query: 318 LAGVFSPILL 327
                SP+  
Sbjct: 215 -----SPLPY 219

Length = 279

>gnl|CDD|184169 PRK13591, ubiA, prenyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 19/100 (19%)

Query: 223 AAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVE 282
             +A + G+   +++P  L           +F         F  +   + S + D  DV+
Sbjct: 165 GFIAGIAGSYCGSLIPVGL-----------IFL--------FFGVKLFINSCVYDFKDVK 205

Query: 283 GDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVF 322
           GD  +GI+TLPV LG+++  ++  GI L ++    +A +F
Sbjct: 206 GDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245

Length = 307

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 258 LLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317
           +LF  AF + +S    ++KDI D+EGD K  + TLP+  G ++   ++  +L+       
Sbjct: 158 ILFLCAFFSTWS--REIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLI------- 208

Query: 318 LAGVFSPI 325
           LA V SP+
Sbjct: 209 LAIVLSPL 216

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PLN02922	315	prenyltransferase	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.96
PRK05951	296	ubiA prenyltransferase; Reviewed	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.95
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.95
PLN00012	375	chlorophyll synthetase; Provisional	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.94
PRK13595	292	ubiA prenyltransferase; Provisional	99.94
PRK12884	279	ubiA prenyltransferase; Reviewed	99.93
PRK12882	276	ubiA prenyltransferase; Reviewed	99.93
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.93
PRK13106	300	ubiA prenyltransferase; Reviewed	99.92
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.92
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.92
PRK12874	291	ubiA prenyltransferase; Reviewed	99.91
PRK12886	291	ubiA prenyltransferase; Reviewed	99.91
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.91
PRK12872	285	ubiA prenyltransferase; Reviewed	99.91
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.9
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.9
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.9
PRK12888	284	ubiA prenyltransferase; Reviewed	99.9
PRK12895	286	ubiA prenyltransferase; Reviewed	99.89
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.89
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.89
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.88
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.88
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.88
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.88
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.87
PRK12871	297	ubiA prenyltransferase; Reviewed	99.86
PRK13591	307	ubiA prenyltransferase; Provisional	99.86
PRK12876	300	ubiA prenyltransferase; Reviewed	99.86
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.82
PRK12873	294	ubiA prenyltransferase; Reviewed	99.82
PRK13592	299	ubiA prenyltransferase; Provisional	99.7
PLN02776	341	prenyltransferase	99.58
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.56
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.52
PRK08238	479	hypothetical protein; Validated	99.48
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.4
KOG4581	359	consensus Predicted membrane protein [Function unk	99.29
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	97.7
PRK12884	279	ubiA prenyltransferase; Reviewed	91.67
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	90.12
PRK12872	285	ubiA prenyltransferase; Reviewed	88.48
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	88.21
PRK13592	299	ubiA prenyltransferase; Provisional	87.96
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	87.69
PRK12895	286	ubiA prenyltransferase; Reviewed	86.15
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	84.86
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	82.99
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	81.77
PRK12873	294	ubiA prenyltransferase; Reviewed	81.35
PRK13595	292	ubiA prenyltransferase; Provisional	81.28
PRK12882	276	ubiA prenyltransferase; Reviewed	81.02
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	80.65
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	80.61

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=8.2e-36  Score=288.52  Aligned_cols=242  Identities=30%  Similarity=0.482  Sum_probs=195.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 019185          101 STSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAID  179 (345)
Q Consensus       101 p~~~~~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD  179 (345)
                      |++..+++...+++++|++|||+.+++.+++..+.+++.....+ .+...+...+.++++..+++.+++++|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56667788889999999999999999999999888776432221 22222334556666667777777779999999999


Q ss_pred             c-------------ChhHHHHh--------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185          180 K-------------SLAMGVML--------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG  232 (345)
Q Consensus       180 ~-------------S~~~al~l--------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g  232 (345)
                      +             |++++..+              .+++.++..+++.+++++||.  ||+|+||+|+.++++++..+|
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g  159 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRG  159 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHH
Confidence            8             55665332              134444455678899999995  999999999999999988888


Q ss_pred             HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185          233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA  312 (345)
Q Consensus       233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a  312 (345)
                      .++.+|.+.+.+.. .++....+...++.+++.++++.++++.||++|+||||+.|+||+|+++|+|++.+++.+++.++
T Consensus       160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~  238 (308)
T PRK12887        160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC  238 (308)
T ss_pred             HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence            87677877654332 22232344556677888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 019185          313 YASAALAGVFSPILLCKLVTMIGHSVLGFILWK  345 (345)
Q Consensus       313 yl~~il~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (345)
                      |+..++.++.+..++....+++||++++..+||
T Consensus       239 y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (308)
T PRK12887        239 YLGMIAVGLLSLPTVNPAFLIVSHLILLALLWW  271 (308)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.8e-36  Score=286.87  Aligned_cols=211  Identities=51%  Similarity=0.869  Sum_probs=186.5

Q ss_pred             HHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------------ChhHHHHh-------------
Q 019185          135 SLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------------SLAMGVML-------------  188 (345)
Q Consensus       135 ~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------------S~~~al~l-------------  188 (345)
                      .++|.+...+.++..+.+.+.+++++++++.++.++|||+|+|+||             |+++|+.+             
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5666666667776667788999999999999999999999999999             66776433             


Q ss_pred             --chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHH
Q 019185          189 --RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSA  266 (345)
Q Consensus       189 --g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~  266 (345)
                        +.++++++++.+++++++||.+.||+|+||+++++.+|+.++++..+++|+|.|+++.++|++..++.+.++..+++.
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~  166 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC  166 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence              244666666678899999998789999999999999999888888888999999999999876666666777677888


Q ss_pred             HHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 019185          267 IFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK  345 (345)
Q Consensus       267 l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (345)
                      ++..+++++||++|+||||+.|++|+|+++|+|++.+++..++.++|+..+++++.++..|.+.+++.||++++..||+
T Consensus       167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~  245 (280)
T PLN02878        167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ  245 (280)
T ss_pred             HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999995

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=2.1e-29  Score=243.39  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~------  180 (345)
                      .++++.|++.+||+++..++.|+++|.++|....+++++..   +++++++++++++++|.+|||+|++  .|+      
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   85 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV   85 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence            34788999999999999999999999999976545788764   6778899999999999999999986  575      


Q ss_pred             -----ChhHH----HH-------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          181 -----SLAMG----VM-------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       181 -----S~~~a----l~-------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                           ++++.    +.       +       .+|+.+..++++++.+++||.  ||+|+|++++ ||+.+++++|.++..
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l~v~  162 (304)
T PRK07419         86 VNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPLAVA  162 (304)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHHHHH
Confidence                 22321    10       0       245565556678999999996  9999999997 999999999997676


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA  317 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i  317 (345)
                      +.+.. ++    +  .++...++.++..++.+.+++.+||++|+|+|+++|+||+|+++|+|++.+++.++...+|+..+
T Consensus       163 g~~yv-~t----~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i  235 (304)
T PRK07419        163 AALYS-QT----P--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALEL  235 (304)
T ss_pred             HHHHH-hc----C--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHH
Confidence            55442 22    1  23335666778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHH
Q 019185          318 LAGVFSPILLCK  329 (345)
Q Consensus       318 l~~~~~~~~~~~  329 (345)
                      ..+.....||..
T Consensus       236 ~~v~~g~~p~~~  247 (304)
T PRK07419        236 LPVLLGFWPWTT  247 (304)
T ss_pred             HHHHHhhhHHHH
Confidence            888877666643

>PLN02922 prenyltransferase

Probab=99.96  E-value=2e-28  Score=237.56  Aligned_cols=212  Identities=15%  Similarity=0.183  Sum_probs=168.6

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc-------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK-------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~-------  180 (345)
                      +++|.|++..||+++..++.|+++|.++|....+++++..   ++++++++++++.++|.+|||+|++  .|+       
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            4688899999999999999999999999976545788764   6788999999999999999999986  464       


Q ss_pred             ----ChhHH----HH-----------h----chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          181 ----SLAMG----VM-----------L----RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       181 ----S~~~a----l~-----------l----g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                          |+++.    ++           +    +.|++++.++++++.+++||.  ||+|+||+|+ |++.+++++|.+...
T Consensus        90 ~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~  166 (315)
T PLN02922         90 NLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATT  166 (315)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHH
Confidence                33321    00           0    134455555678999999996  9999999998 999999999987666


Q ss_pred             HHHHHhhhhhcCC-cc---cchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGR-PV---VFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY  313 (345)
Q Consensus       238 g~~~~~~~~~~g~-~~---~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay  313 (345)
                      +.|.. ++..++. ..   ..+...++.+++..+++.+++++||++|+|+|+++|+||+|+++|+|++.+++.+++..+|
T Consensus       167 g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y  245 (315)
T PLN02922        167 AFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY  245 (315)
T ss_pred             HHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence            55543 2211110 00   1233466778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHH
Q 019185          314 ASAALAGVFSPILLC  328 (345)
Q Consensus       314 l~~il~~~~~~~~~~  328 (345)
                      +..+..++....||.
T Consensus       246 ~~~i~~v~~~~~p~~  260 (315)
T PLN02922        246 SLLAALGLLKALPLP  260 (315)
T ss_pred             HHHHHHHHHhhhhHH
Confidence            999988888766653

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=3.7e-28  Score=232.87  Aligned_cols=203  Identities=16%  Similarity=0.166  Sum_probs=165.0

Q ss_pred             HHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc-----------C
Q 019185          115 FYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK-----------S  181 (345)
Q Consensus       115 ~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~-----------S  181 (345)
                      |++.+||+++..+++|+++|.++|....+++++..   +++++++++++|+++|.+|||+|++  .|+           |
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~   78 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS   78 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence            57889999999999999999999976545688764   5778889999999999999999985  465           2


Q ss_pred             hhHH----HH-------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185          182 LAMG----VM-------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV  243 (345)
Q Consensus       182 ~~~a----l~-------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~  243 (345)
                      +++.    ++       .       ..|+.+..++++++.+++||.  ||+++|++++ ||+++++++|.+++.+.+.. 
T Consensus        79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv-  154 (285)
T TIGR02235        79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAALYA-  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHHHH-
Confidence            2221    10       0       235555555678999999996  9999999997 99999999999766654442 


Q ss_pred             hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 019185          244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFS  323 (345)
Q Consensus       244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~  323 (345)
                      ++    +  .++...++.+++.++.+.+++..||++|+|+|+++|+||+|+++|+|++.+++..++..+|+..+...+..
T Consensus       155 qt----~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  228 (285)
T TIGR02235       155 QS----Q--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG  228 (285)
T ss_pred             hC----C--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22    2  23335666788888999999999999999999999999999999999999999999999999998888887


Q ss_pred             hHHHHHH
Q 019185          324 PILLCKL  330 (345)
Q Consensus       324 ~~~~~~~  330 (345)
                      ..||.+.
T Consensus       229 ~~p~~~l  235 (285)
T TIGR02235       229 FLPWTTL  235 (285)
T ss_pred             hhHHHHH
Confidence            7766543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=4.2e-28  Score=235.66  Aligned_cols=211  Identities=15%  Similarity=0.110  Sum_probs=160.8

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cc---------
Q 019185          112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAI--DK---------  180 (345)
Q Consensus       112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~ei--D~---------  180 (345)
                      +|.|++++||+++..+.+|+++|.++|....+++++..   +++++++++++++++|.+|||+|++.  |+         
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            57899999999999999999999999975445677653   57778888999999999999999864  43         


Q ss_pred             ------ChhHHHH-----------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185          181 ------SLAMGVM-----------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV  236 (345)
Q Consensus       181 ------S~~~al~-----------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~  236 (345)
                            |+|+...           +       .+++.+...+++.+.+++||.  ||+++||+|+ ||+.+++++|..+.
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~--gP~~l~y~gL-Ge~~v~i~~G~~~v  156 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTG--GPLPLSRMPL-GEIFSGLTMGFGIF  156 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcC--CCcccccCcc-HHHHHHHHHHHHHH
Confidence                  3343211           0       234555555678899999996  9999999995 99999999998655


Q ss_pred             HHHHHHhhhhhcCCcc----------cch----HHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHH
Q 019185          237 LPYFLHVQKYVLGRPV----------VFT----KPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVL  302 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~----------~~~----~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~  302 (345)
                      .+.+.. ++...+...          .++    ...++.+++.++.+..+++.||++|+|+|+++|+||+|+++|+|++.
T Consensus       157 ~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~  235 (317)
T PRK13387        157 LLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV  235 (317)
T ss_pred             HHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence            544332 221110000          000    01123677777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019185          303 SMSTGILLMAYASAALAGVFSPILLCK  329 (345)
Q Consensus       303 ~l~~~ll~~ayl~~il~~~~~~~~~~~  329 (345)
                      +++.++..++|+..+..++....||..
T Consensus       236 ~l~~~l~~~a~l~~~~~v~~g~lp~~~  262 (317)
T PRK13387        236 VLFAILFYASYLAIAVIVLMGYISPWA  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999988887777555543

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.96  E-value=2.5e-28  Score=233.19  Aligned_cols=203  Identities=19%  Similarity=0.173  Sum_probs=150.7

Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185          113 DAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----------  180 (345)
Q Consensus       113 ~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----------  180 (345)
                      |++++++||+++..+++++++|.+++....++ +++..  .++.++++..++++++|++|||+|+|+|+           
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            36789999999999999999999887432222 33332  23446778899999999999999999998           


Q ss_pred             --ChhHHHHh---------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185          181 --SLAMGVML---------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV  243 (345)
Q Consensus       181 --S~~~al~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~  243 (345)
                        |++++..+               +.+......+++.+.+++||.  ||+|+||++++|++.++..++.....+.+.. 
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~-  155 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAI-  155 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHHH-
Confidence              45554222               122223333467788999996  9999999998899998777665322232221 


Q ss_pred             hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 019185          244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFS  323 (345)
Q Consensus       244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~  323 (345)
                          .+ .  .+...++..+..++++.+++.+||++|+|+|+++|+||+|+++|+|++++++..++.++|+..+......
T Consensus       156 ----~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~  228 (283)
T TIGR01476       156 ----FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIW  228 (283)
T ss_pred             ----hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                12 1  2223455566677889999999999999999999999999999999999999998888887777655554


Q ss_pred             hHHH
Q 019185          324 PILL  327 (345)
Q Consensus       324 ~~~~  327 (345)
                      ..+|
T Consensus       229 ~~~~  232 (283)
T TIGR01476       229 GQPW  232 (283)
T ss_pred             CccH
Confidence            4444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.7e-27  Score=229.31  Aligned_cols=214  Identities=17%  Similarity=0.190  Sum_probs=164.8

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc-------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK-------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~-------  180 (345)
                      +++|.+++.+||+++..+..|+.+|.++|....+++++..   +++++++.+++++++|.+|||+|+  |.|+       
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            3789999999999999999999999999976545777654   677889999999999999999995  4553       


Q ss_pred             ---------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHH
Q 019185          181 ---------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGI  233 (345)
Q Consensus       181 ---------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~  233 (345)
                               |++++..+           +       .++.+...+++++.++.||.  ||+++|++++ |++.+++.+|.
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~  155 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSH  155 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHH
Confidence                     23333211           1       22333334578899999996  9999999886 99999999998


Q ss_pred             HhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185          234 NNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY  313 (345)
Q Consensus       234 i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay  313 (345)
                      .+++|.+... +    +..  +...+...+...+++..+++.||++|+|+|+++|+||+|+++|+|++ ++...+...+|
T Consensus       156 ~~vlg~~~~~-~----~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~  227 (296)
T PRK05951        156 MLVMGLIYVW-L----GNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPY  227 (296)
T ss_pred             HHHHHHHHHH-h----Ccc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHH
Confidence            7666665432 1    122  22455567777888999999999999999999999999999999999 77777788889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Q 019185          314 ASAALAGVFSPILLCKLVTMIGHS  337 (345)
Q Consensus       314 l~~il~~~~~~~~~~~~~~~~~~~  337 (345)
                      +..+..++....|+...+..+++-
T Consensus       228 ~~~~~~~~~g~~~~~~l~~ll~lp  251 (296)
T PRK05951        228 VILQILLIAILTPLISLWALLSLL  251 (296)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHH
Confidence            888888887766665555544443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=1.9e-27  Score=227.02  Aligned_cols=206  Identities=18%  Similarity=0.244  Sum_probs=165.0

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cc-----c--
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--ID-----K--  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD-----~--  180 (345)
                      ++.+.|+++.||+|+..++.|++.|.++|......+++.   .++++++++++++..+|..|||+|++  .|     +  
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            356899999999999999999999999997764456654   47889999999999999999999985  56     2  


Q ss_pred             --------ChhHHHHh--------------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185          181 --------SLAMGVML--------------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG  232 (345)
Q Consensus       181 --------S~~~al~l--------------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g  232 (345)
                              +.+.+.++                    ..|.++..+++|++.+++|++  +|+++++.|+ |++.++.++|
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG  159 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG  159 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence                    22222111                    123334445689999999997  9999999997 9999999999


Q ss_pred             HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185          233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA  312 (345)
Q Consensus       233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a  312 (345)
                      .+...+.|. .|+    +.  .+...++.+++..+.+..++..||++|+|+|+++|++|+|||+|+++++.+...++..+
T Consensus       160 ~l~v~g~~y-iqt----~~--~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a  232 (303)
T COG1575         160 PLIVLGAYY-IQT----GR--LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA  232 (303)
T ss_pred             HHHHHHHHH-Hhc----cc--chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHH
Confidence            976654443 222    12  22346677888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHH
Q 019185          313 YASAALAGVFSPILLC  328 (345)
Q Consensus       313 yl~~il~~~~~~~~~~  328 (345)
                      |+..++..+....+|.
T Consensus       233 ~l~~~~~~i~~~~~~~  248 (303)
T COG1575         233 YLAIVIFVILGLFPVW  248 (303)
T ss_pred             HHHHHHHHHHHhchHH
Confidence            9999987666654443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.96  E-value=5.1e-27  Score=225.02  Aligned_cols=203  Identities=18%  Similarity=0.219  Sum_probs=159.8

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc---------
Q 019185          112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK---------  180 (345)
Q Consensus       112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~---------  180 (345)
                      +|+|++++||+++..+.+|+++|.++|... .++++..   +++++++.+++++++|.+|||+|+  |+|+         
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999998532 3456543   567788899999999999999999  4674         


Q ss_pred             ------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185          181 ------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV  236 (345)
Q Consensus       181 ------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~  236 (345)
                            |++++..+           +       .++..+..+++++.+++||.  ||+|+|++++ ||+.+++.+|...+
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~~  155 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVIV  155 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHHH
Confidence                  45554221           1       22333334467788999996  9999999886 99998888888655


Q ss_pred             HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185          237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA  316 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~  316 (345)
                      .+.+.. ++    +.  .+...++.+++..+++.++++.||++|+|+|+++|+||+|+++|+|++.+++..+..++|+..
T Consensus       156 ~~~~~~-~~----~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~  228 (293)
T PRK06080        156 LGTYYL-QA----GT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCI  228 (293)
T ss_pred             HHHHHH-hc----CC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHH
Confidence            543331 11    11  233566778888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHH
Q 019185          317 ALAGVFSPILLC  328 (345)
Q Consensus       317 il~~~~~~~~~~  328 (345)
                      +...+....+|.
T Consensus       229 ~~~~~~~~~~~~  240 (293)
T PRK06080        229 VLLALLGLASPW  240 (293)
T ss_pred             HHHHHHhhhhHH
Confidence            988887755554

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.95  E-value=7.5e-27  Score=226.62  Aligned_cols=201  Identities=18%  Similarity=0.212  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHH-HHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLI-EVLKPIVPTIMMNIFVVAINQLSDIAIDK-------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~-~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------  180 (345)
                      .+++++|++++||+++..+++++++|.+.+..  .++...... .++.++++..++++++|++|||+|+|+|+       
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            46889999999999999999999988776532  223221111 13445677788999999999999999998       


Q ss_pred             ------ChhHHHHh-----------c---hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185          181 ------SLAMGVML-----------R---SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF  240 (345)
Q Consensus       181 ------S~~~al~l-----------g---~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~  240 (345)
                            |++++..+           +   .+......+++.+++++||.  ||+++||+++++++.++..+|.+.+++.+
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~  179 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGA  179 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHH
Confidence                  45555322           1   12233333467778999996  99999999988999998887764333333


Q ss_pred             HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185          241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA  319 (345)
Q Consensus       241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~  319 (345)
                      ...+    +..  .+...++.+++.++++.+++.+||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+..
T Consensus       180 ~~~~----~~~--~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~  252 (314)
T PRK07566        180 AAFG----AGL--PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL  252 (314)
T ss_pred             HHhc----cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221    111  223445556677788899999999999999999999999999999999999988888888776443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.95  E-value=1.3e-26  Score=224.27  Aligned_cols=201  Identities=17%  Similarity=0.233  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF---LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      .+++|.|++++||+++..+++++++|...+.    ++++..   ....+.++++++++++++|.+|||+|+|+|+     
T Consensus        13 ~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        13 TNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             hhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            5678999999999999999999999987542    343321   1113445677789999999999999999998     


Q ss_pred             --------ChhHHHHh-----------ch----------hHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185          181 --------SLAMGVML-----------RS----------PPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN  231 (345)
Q Consensus       181 --------S~~~al~l-----------g~----------~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~  231 (345)
                              |++++..+           +.          +..+...+++.+++++||.  ||+|+||++++|++.++..+
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence                    44554221           11          1223333467888999996  99999999988999887777


Q ss_pred             HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185          232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM  311 (345)
Q Consensus       232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~  311 (345)
                      +...+.+.+..     .| .  .+...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|++.+++..++..
T Consensus       167 ~~~~~~~~~a~-----~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~  238 (306)
T TIGR02056       167 IALPWWAGHAL-----FG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI  238 (306)
T ss_pred             HHHHHHHHHHH-----hC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence            65433332321     12 2  2234455666777899999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHh
Q 019185          312 AYASAALAGVFS  323 (345)
Q Consensus       312 ayl~~il~~~~~  323 (345)
                      ++...+......
T Consensus       239 ~~~~~~~~~~~~  250 (306)
T TIGR02056       239 FQGLIAAYLLAI  250 (306)
T ss_pred             HHHHHHHHHHHh
Confidence            777666544433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.95  E-value=1.9e-26  Score=228.29  Aligned_cols=195  Identities=19%  Similarity=0.276  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF---LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      .+++|.|++++||++|....+++++|.+...    .+++..   ....+.++++..++++++|++|||+|+|+|+     
T Consensus        82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~g----~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         82 TDIWKIRLQLTKPVTWPPLVWGVLCGAAASG----NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             hHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC----CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            6788999999999999999999999987432    233321   1123566777889999999999999999998     


Q ss_pred             --------ChhHHHHh-----------ch---------hHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185          181 --------SLAMGVML-----------RS---------PPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN  231 (345)
Q Consensus       181 --------S~~~al~l-----------g~---------~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~  231 (345)
                              |+++++.+           +.         .+... ..+++.+++++||.  ||+++||++++|++.++..+
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence                    45555331           10         11122 22456778999996  99999999999999877777


Q ss_pred             HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185          232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM  311 (345)
Q Consensus       232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~  311 (345)
                      +.+.+.+.+.     +.| .  .+...++..++.++++.++++.||++|+|+|+++|++|+||++|+|++++++..++.+
T Consensus       236 ~~lp~~~g~a-----~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l  307 (375)
T PLN00012        236 ISLPWWAGQA-----LFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDI  307 (375)
T ss_pred             HHHHHHHHHH-----HcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHH
Confidence            6532222222     122 2  2234455566777899999999999999999999999999999999999998766655


Q ss_pred             HHHHHH
Q 019185          312 AYASAA  317 (345)
Q Consensus       312 ayl~~i  317 (345)
                      .+...+
T Consensus       308 ~~l~~~  313 (375)
T PLN00012        308 TQLSVA  313 (375)
T ss_pred             HHHHHH
Confidence            554433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=1.6e-26  Score=221.56  Aligned_cols=194  Identities=17%  Similarity=0.176  Sum_probs=152.7

Q ss_pred             ccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc---------------Ch
Q 019185          120 RPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK---------------SL  182 (345)
Q Consensus       120 RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~---------------S~  182 (345)
                      ||+++..++.|+++|.++|.... .+++..   +++++++++++++++|.+|||+|++  +|+               |+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            99999999999999999997653 677654   6778889999999999999999984  342               33


Q ss_pred             hHHHH-----------hc-------hh------HHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185          183 AMGVM-----------LR-------SP------PLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP  238 (345)
Q Consensus       183 ~~al~-----------lg-------~~------~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg  238 (345)
                      ++...           +|       .+      ++.....++++.+++||.  ||+|+|++++ ||+.+++++|.+...|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHHH
Confidence            33210           11       22      334444578889999996  9999999997 9999999999876665


Q ss_pred             HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185          239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL  318 (345)
Q Consensus       239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il  318 (345)
                      .+.. ++    +..  +...++.++..++++.+++.+||++|+|+|+++|+||+|+++|+|++++++.+++..+|+..+.
T Consensus       154 ~~yv-q~----~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~  226 (284)
T TIGR00751       154 TQYL-QA----HRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV  226 (284)
T ss_pred             HHHH-hc----CCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence            5442 22    222  2345556777888899999999999999999999999999999999999999999999988887


Q ss_pred             HHHHhhHHH
Q 019185          319 AGVFSPILL  327 (345)
Q Consensus       319 ~~~~~~~~~  327 (345)
                      .+.....||
T Consensus       227 ~~~~~~~p~  235 (284)
T TIGR00751       227 FMLATPISW  235 (284)
T ss_pred             HHHHhhchH
Confidence            776555444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.95  E-value=8.6e-26  Score=220.55  Aligned_cols=224  Identities=19%  Similarity=0.286  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccC-CCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------
Q 019185          108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSL-ADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------  180 (345)
Q Consensus       108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------  180 (345)
                      ..+++|++++++||++++ ..+|.+.|..+|.+.. +.++... ..+...++.+.+..++++++|||+|+|+|+      
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            356899999999999998 7788888888875321 2222111 112223444456677899999999999998      


Q ss_pred             -------ChhHHHHh-----------ch-----------hHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185          181 -------SLAMGVML-----------RS-----------PPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN  231 (345)
Q Consensus       181 -------S~~~al~l-----------g~-----------~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~  231 (345)
                             |+++++.+           +.           +..+...+++.+++++||.  ||+++||++++++..+++.+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence                   45655322           10           1112222456789999996  99999999998999888888


Q ss_pred             HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185          232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM  311 (345)
Q Consensus       232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~  311 (345)
                      +.....+.+.     .+| .  .+...++.+++.++++.+++++||++|+|+|++.|+||+|+++|++++.+++.....+
T Consensus       164 ~~~~~~~~~a-----~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSANA-----LFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHHH-----Hhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            7643333322     122 1  2234455666777899999999999999999999999999999999999998877767


Q ss_pred             HHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHh
Q 019185          312 AYASAALAGVFSPILLC---KLVTMIGHSVLGFIL  343 (345)
Q Consensus       312 ayl~~il~~~~~~~~~~---~~~~~~~~~~~~~~l  343 (345)
                      ..+..+..+..+...+.   ..+.++.|...-.-+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l  270 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQL  270 (331)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666654333   344444455444333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=9.3e-26  Score=215.94  Aligned_cols=219  Identities=26%  Similarity=0.386  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHH--HHHHHHHHhhhhhccccccc--Chh
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPT--IMMNIFVVAINQLSDIAIDK--SLA  183 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~--~l~~~a~~~iNDy~D~eiD~--S~~  183 (345)
                      .++++.++++.||++|..++.|++.|.++|....++ +++.     ++++++.  +..+.+.|++|||+|+|+||  .+|
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            568999999999999999999999999999764332 4442     1222222  22445667799999999998  111


Q ss_pred             --------HH-------HHh----c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          184 --------MG-------VML----R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       184 --------~a-------l~l----g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                              ++       .++    +       .+.....++.+++++++||.  ||+|+|++|+.+..+.+... .....
T Consensus        80 ~~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~-~~~~~  156 (282)
T PRK12875         80 DREREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI-LPGVA  156 (282)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH-HHHHH
Confidence                    10       000    1       11111222356789999996  99999999996554432221 11112


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA  317 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i  317 (345)
                      +++...     | .  .+...+  .+..++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++.++.+
T Consensus       157 ~y~~~t-----g-~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        157 AYALVS-----G-S--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             HHHHHc-----C-C--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence            333321     1 1  222232  22346889999999999999999999999999999999999877666444433333


Q ss_pred             HHHHHh-----------------------hHHHH-HHHHHHHHHHHHHHhcC
Q 019185          318 LAGVFS-----------------------PILLC-KLVTMIGHSVLGFILWK  345 (345)
Q Consensus       318 l~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~l~~  345 (345)
                      .++...                       -++|. ++.|++|.+++.+.||+
T Consensus       227 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (282)
T PRK12875        227 AVDLRLGALLLVYPALVLAILRAGIAVDRAYWWFPAINTVVGMLLTLGGLWR  278 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            221111                       15666 99999999999999984

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=3.8e-25  Score=211.63  Aligned_cols=193  Identities=21%  Similarity=0.263  Sum_probs=136.6

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185          112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----------  180 (345)
Q Consensus       112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----------  180 (345)
                      +|.+++++||++|+.+.+|+.+|.++|.+.   .++..   .+.++......+.+.|.+|||+|+|.|+           
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~---~~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~   74 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGGE---IDWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA   74 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCCC---CChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence            367899999999999999999999999322   23321   1222222334455556679999999886           


Q ss_pred             -ChhHH----HHh---------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185          181 -SLAMG----VML---------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF  240 (345)
Q Consensus       181 -S~~~a----l~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~  240 (345)
                       |+++.    +..               +.++.+....++++.++.||.  ||.|+|++|+.++++..+.+.....+|.+
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~  152 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLV  152 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHH
Confidence             33321    111               123333334578899999996  99999999998886543333221233333


Q ss_pred             HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185          241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG  320 (345)
Q Consensus       241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~  320 (345)
                      ..      |+..  +...++.+..+++|+.+++++||++|+|+||++|+||+|+++|+|++.+++..+..++++..+..+
T Consensus       153 ~~------~~~~--~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        153 LA------GAPF--TAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             Hh------hccc--cHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21      2222  234556677788899999999999999999999999999999999999999999999988877544

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=2e-25  Score=213.70  Aligned_cols=190  Identities=23%  Similarity=0.278  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTP--TFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~--~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      ....++.+++.+||.+|+.++.++++|...+..   .+++  ..   +++++......+.+.|++|||+|+|+|+     
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence            356788899999999999999999999977743   2343  32   4455666677899999999999999998     


Q ss_pred             --------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185          181 --------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN  234 (345)
Q Consensus       181 --------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i  234 (345)
                              |++++..+           +       .+.......++.+++++||.  ||+|+|++|++++++. ..+|. 
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~-  157 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL-  157 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH-
Confidence                    34443221           1       11112223467789999995  9999999999999986 33443 


Q ss_pred             hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185          235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA  314 (345)
Q Consensus       235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl  314 (345)
                       |.++...    +.|...   .+..  .+...+|+.++++++|++|+|+||+.|+||+|+++|+|++.+++..+.+++-+
T Consensus       158 -p~~~~~~----~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~  227 (292)
T PRK13595        158 -PLALPAL----ALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA  227 (292)
T ss_pred             -HHHHHHH----HcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH
Confidence             4333321    223221   1222  23445788999999999999999999999999999999999999888765544


Q ss_pred             HHH
Q 019185          315 SAA  317 (345)
Q Consensus       315 ~~i  317 (345)
                      +..
T Consensus       228 ~~~  230 (292)
T PRK13595        228 LLW  230 (292)
T ss_pred             HHH
Confidence            433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=2.2e-24  Score=205.36  Aligned_cols=194  Identities=21%  Similarity=0.365  Sum_probs=146.4

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      ++++++++++||+++..+.++.+.|.++|...   +++.   .+++++++.+++++++|++|||+|+|+|+         
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            47899999999999999999999999888542   2222   25667788999999999999999999997         


Q ss_pred             ----ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHH
Q 019185          181 ----SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLH  242 (345)
Q Consensus       181 ----S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~  242 (345)
                          |++++..++              ++...+..+++.+++++||.     ++||+++.++++++..+|.....+....
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~~  150 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIAV  150 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHHh
Confidence                456653321              12223333456778999995     6899998899998887776333333221


Q ss_pred             hhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHH
Q 019185          243 VQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVF  322 (345)
Q Consensus       243 ~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~  322 (345)
                            +.. .  ...++..+..++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.+++..+....+++.++..+.
T Consensus       151 ------~~~-~--~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~  221 (279)
T PRK12884        151 ------GEL-N--EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF  221 (279)
T ss_pred             ------CCC-c--hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  211 1  1344455566788999999999999999999999999999999999999988887777766655444


Q ss_pred             h
Q 019185          323 S  323 (345)
Q Consensus       323 ~  323 (345)
                      .
T Consensus       222 ~  222 (279)
T PRK12884        222 G  222 (279)
T ss_pred             H
Confidence            3

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=1.9e-24  Score=205.90  Aligned_cols=190  Identities=22%  Similarity=0.311  Sum_probs=138.5

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------  180 (345)
                      ++|++++++||+++..+.++.+.|.+++.+.   .++.  ...++++++.+++++++|++|||+|+|+|+          
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3789999999999999999999999988542   2211  124577888899999999999999999997          


Q ss_pred             ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185          181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV  243 (345)
Q Consensus       181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~  243 (345)
                         |+++++.++              .+...+..+++.++.++||.     |+||+|.++|++++...|.....|...  
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~--  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA--  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH--
Confidence               566664431              11122222356667889995     899999999999877666542233221  


Q ss_pred             hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185          244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL  318 (345)
Q Consensus       244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il  318 (345)
                          .+.. . ....+...+..++++.+++++||++|+|+|+++|++|+|+++|+|++.++.........++..+
T Consensus       151 ----~~~~-~-~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~  219 (276)
T PRK12882        151 ----VGTE-G-LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL  219 (276)
T ss_pred             ----hccc-c-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                1211 1 1123344555667889999999999999999999999999999999999887776655544443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.93  E-value=4.9e-24  Score=203.39  Aligned_cols=189  Identities=21%  Similarity=0.300  Sum_probs=140.6

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------  180 (345)
                      ++++|++++||+++..+.++.+.|.+++...  ..++.   .+++++++.++.++++|++|||+|+|+|+          
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3678999999999999999999998888532  23332   25677888999999999999999999998          


Q ss_pred             ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185          181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV  243 (345)
Q Consensus       181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~  243 (345)
                         |+++++.++              .+......+++.++.++||.     ++||++.++|++++..+|.....|... .
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-V  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-H
Confidence               566664431              11222222456677899995     689999999999988888753344432 1


Q ss_pred             hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185          244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA  319 (345)
Q Consensus       244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~  319 (345)
                      +     .  .  ...++..+..++|+.++++.||++|+|+|+++|++|+|+++|+|++.+++.....+..+...+.
T Consensus       151 ~-----~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~  217 (279)
T PRK09573        151 F-----N--V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLP  217 (279)
T ss_pred             c-----c--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1     1  1  1233344455678899999999999999999999999999999999998877765555554443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=1.4e-23  Score=202.52  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          106 DFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       106 ~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      +-...+++.++|++||+..+....+.+.|..+|....  .++.   .+++++++.+++++++|++|||+|+|+|+     
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~--~~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGI--PPIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            3356689999999999999999988888988885432  2332   24567788899999999999999999997     


Q ss_pred             ----------ChhHHHHhc-------------hhHHHHH-HHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185          181 ----------SLAMGVMLR-------------SPPLVIA-LVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV  236 (345)
Q Consensus       181 ----------S~~~al~lg-------------~~~l~~~-l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~  236 (345)
                                |+++|+++.             ..+.... ..++.++...|+      .+||++.++++++++.+|....
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~  157 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYP------YMKRYTAFANYHLASIQGLAVF  157 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHH
Confidence                      566765431             0111111 123445567788      3799999999999888887544


Q ss_pred             HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185          237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA  316 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~  316 (345)
                      .|.....+..............++..+...+|+.+++++|+++|+|+|+++|+||+|+++| +++.+++..+..+..++.
T Consensus       158 ~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~  236 (300)
T PRK13106        158 SGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLD  236 (300)
T ss_pred             HHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            4554322210000000011223334445678999999999999999999999999999999 889998888887777777


Q ss_pred             HHHHHHhh
Q 019185          317 ALAGVFSP  324 (345)
Q Consensus       317 il~~~~~~  324 (345)
                      .+.+....
T Consensus       237 ~~~~~~~~  244 (300)
T PRK13106        237 LLGDLYYG  244 (300)
T ss_pred             HHHHHHhC
Confidence            77766553

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.92  E-value=3.3e-23  Score=198.36  Aligned_cols=198  Identities=16%  Similarity=0.142  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHhccchHH---HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185          108 LTKKLDAFYRLSRPYAWT---SIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----  180 (345)
Q Consensus       108 ~~~~L~a~~~l~RP~t~~---~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----  180 (345)
                      ++.++++|++++||+...   ...+|.+.|.++|.... ..++.   ..++++++.+++++++|++|||+|+|+|+    
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            355799999999998655   46789999988885432 23333   35677888899999999999999999997    


Q ss_pred             -----------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHh
Q 019185          181 -----------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINN  235 (345)
Q Consensus       181 -----------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~  235 (345)
                                 |++++..++              .+......+++.+..+.||.      .||++.+++++.++.++...
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~  152 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI  152 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence                       455554331              12222233456677889983      68888889988877777532


Q ss_pred             HHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHH
Q 019185          236 VLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYAS  315 (345)
Q Consensus       236 ~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~  315 (345)
                      ..++....      +..  +...++..+...+|+.+.+++++++|+|+|+++|++|+|+++|+|++.++........+++
T Consensus       153 l~~~~a~~------g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~  224 (285)
T PRK12847        153 LMAFAAVQ------NQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILW  224 (285)
T ss_pred             HHHHHHHc------CCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHH
Confidence            23433321      222  2345556667789999999999999999999999999999999999999988887777776


Q ss_pred             HHHHHHHh
Q 019185          316 AALAGVFS  323 (345)
Q Consensus       316 ~il~~~~~  323 (345)
                      .++.....
T Consensus       225 ~~~~~~~~  232 (285)
T PRK12847        225 LILGIISS  232 (285)
T ss_pred             HHHHHHhc
Confidence            66555443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.92  E-value=1.6e-23  Score=200.20  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=144.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------  180 (345)
                      ++|.+++++||+...........|.++|...  ..++.   .+++++++.+++++++|++|||+|+|+|+          
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKG--LPGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            3689999999999999988877788887543  23332   25677889999999999999999999998          


Q ss_pred             -----ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185          181 -----SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL  241 (345)
Q Consensus       181 -----S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~  241 (345)
                           |+++|..++             ..+... ...++.++.+.|+      .+||++.+++++.+..++.....|+..
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a  149 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVA  149 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHH
Confidence                 456664431             011111 1234556678898      379999999999888777643344433


Q ss_pred             HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHH
Q 019185          242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGV  321 (345)
Q Consensus       242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~  321 (345)
                      ..     | ........++..+...+|+.+++++||++|+|+|+++|++|+|+++|+|++.++......+.+++.++.+.
T Consensus       150 ~~-----g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  223 (282)
T TIGR01475       150 VI-----G-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF  223 (282)
T ss_pred             Hh-----C-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21     1 11211234455667778999999999999999999999999999999999999988888788877777666


Q ss_pred             Hhh
Q 019185          322 FSP  324 (345)
Q Consensus       322 ~~~  324 (345)
                      ...
T Consensus       224 ~~~  226 (282)
T TIGR01475       224 YVG  226 (282)
T ss_pred             Hhh
Confidence            554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.2e-22  Score=195.42  Aligned_cols=200  Identities=21%  Similarity=0.173  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHhhccc---CCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---
Q 019185          107 FLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQS---LADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---  180 (345)
Q Consensus       107 ~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---  180 (345)
                      +.++++|+++|++||+..+.+....+.|.++|...   ...+++.   .+++++++.+++++++|++|||+|+|+|+   
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            45678999999999999999999888888887521   1124443   35677888889999999999999999997   


Q ss_pred             ------------ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185          181 ------------SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN  234 (345)
Q Consensus       181 ------------S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i  234 (345)
                                  |+++++.++             ..+....+ +..++....|+.      +||++.++++..++.+|..
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~  153 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA  153 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh------hcccccccHHHHHHHHHHH
Confidence                        556664431             01111111 234556778883      7999999999988887764


Q ss_pred             hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185          235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA  314 (345)
Q Consensus       235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl  314 (345)
                      ...|+...      ++...  ...+++.+..++|+.+++++++++|+|+|+++|++|+|+++|++++.++.........+
T Consensus       154 ~l~G~~av------~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~  225 (291)
T PRK12874        154 PIAGVVAV------LGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVL  225 (291)
T ss_pred             HHHHHHHH------cCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHH
Confidence            33454432      12222  23344556667999999999999999999999999999999999998877666555555


Q ss_pred             HHHHHHHHh
Q 019185          315 SAALAGVFS  323 (345)
Q Consensus       315 ~~il~~~~~  323 (345)
                      ..++.+...
T Consensus       226 ~~~~~~~~~  234 (291)
T PRK12874        226 FWLLFVWCA  234 (291)
T ss_pred             HHHHHHHHh
Confidence            555444443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.7e-22  Score=194.24  Aligned_cols=197  Identities=17%  Similarity=0.178  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185          108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------  180 (345)
Q Consensus       108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------  180 (345)
                      ..++++.++|++||+.......+.+.|..+|....+  ++.   .++.++++.+++++++|++|||+|+|+|+       
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            456899999999999999998888889888854322  222   24567788899999999999999999997       


Q ss_pred             --------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185          181 --------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP  238 (345)
Q Consensus       181 --------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg  238 (345)
                              |+++|..+.             ..+... ..+++.+....|+.      .||++.++++..+++++.. +++
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~-~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSY------CKRFTALAHVVLGFCLALA-PLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhccccccHHHHHHHHHHH-HHH
Confidence                    456664331             112211 22245566788993      6999999999988777663 443


Q ss_pred             HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185          239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL  318 (345)
Q Consensus       239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il  318 (345)
                      .|.+.     ++..  +...++..+...+|+.+.++.++++|+|+|+++|+||+|+++|++++.++......+.+++.++
T Consensus       152 g~~a~-----~g~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~  224 (291)
T PRK12886        152 AWIAI-----RGTI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFA  224 (291)
T ss_pred             HHHHH-----cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHH
Confidence            33322     1122  2234555666778999999999999999999999999999999999999887776777776666


Q ss_pred             HHHHh
Q 019185          319 AGVFS  323 (345)
Q Consensus       319 ~~~~~  323 (345)
                      .+...
T Consensus       225 ~~~~~  229 (291)
T PRK12886        225 LGISA  229 (291)
T ss_pred             HHHHh
Confidence            55543

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.91  E-value=1.4e-22  Score=193.04  Aligned_cols=178  Identities=21%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185          112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----------  180 (345)
Q Consensus       112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----------  180 (345)
                      +|+|++++||+++..+.++.+.|.+++.+..+  ++.   ..+.++++.++.++++|++|||+|+|+|+           
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            67899999999999999999999888754221  122   13456677788899999999999999997           


Q ss_pred             --ChhHHHHh-------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhh
Q 019185          181 --SLAMGVML-------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQ  244 (345)
Q Consensus       181 --S~~~al~l-------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~  244 (345)
                        |++++..+       +       ++......+++.+++++|+.     ++|+++.++++.++..+|.....|... . 
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-~-  150 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-V-  150 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-h-
Confidence              45555332       1       12223233456678999996     689999889999988888743233322 1 


Q ss_pred             hhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185          245 KYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL  309 (345)
Q Consensus       245 ~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll  309 (345)
                          + ...+  ..+. ....+++..++++.||++|+|+|+++|++|+|+++|+|++.++.....
T Consensus       151 ----~-~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        151 ----G-RIGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             ----c-cccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence                1 1111  1222 223456678899999999999999999999999999999998766543

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.1e-22  Score=193.93  Aligned_cols=208  Identities=26%  Similarity=0.319  Sum_probs=151.2

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      +.+++++++.|+.+...+......+......  .++. .    ....+++.++.+.++|++|||+|+|+|+         
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLP-I----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcCh-h----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            4678999999999999988887766432111  1111 1    2355677889999999999999999997         


Q ss_pred             ChhHH----HHh---------------chhHHHHHHHHHHHHhHhccCCcccc-cccccCcchhHHHHHHHHHHhHHHHH
Q 019185          181 SLAMG----VML---------------RSPPLVIALVLRCILGAAYSIDLPLL-RWKASPLMAAVAIVIGNGINNVLPYF  240 (345)
Q Consensus       181 S~~~a----l~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~-rlKr~pllg~L~v~~~~g~i~~lg~~  240 (345)
                      |++++    +++               .++...+..+++.++++.||.  ||+ |+||.|.+++++++..||....++.+
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~  152 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV  152 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH
Confidence            22222    110               123334444567788999996  665 68999999999999999986454333


Q ss_pred             HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185          241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG  320 (345)
Q Consensus       241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~  320 (345)
                      ...     +..  ++...++..++.+++.+.+++.+|++|+|+|+++|++|+|+++|+|++++++..+..++++..+...
T Consensus       153 ~~~-----~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~  225 (285)
T PRK12872        153 YYY-----QLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGV  225 (285)
T ss_pred             Hhc-----ccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            221     111  2233455566677788999999999999999999999999999999999999999999999988887


Q ss_pred             HHhhHHHHHHHHH
Q 019185          321 VFSPILLCKLVTM  333 (345)
Q Consensus       321 ~~~~~~~~~~~~~  333 (345)
                      .....+|...+.+
T Consensus       226 ~~~~~~~~~~~~~  238 (285)
T PRK12872        226 YTGLLPLLLLVLL  238 (285)
T ss_pred             HHhHhhHHHHHHH
Confidence            7766666544433

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.90  E-value=2.7e-22  Score=192.37  Aligned_cols=193  Identities=23%  Similarity=0.335  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------  180 (345)
                      .+.++.++|..||.++.....+...|..++..   .+..  +...++++++++++++++|++||++|+|+|+        
T Consensus        10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~R   84 (289)
T COG0382          10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNR   84 (289)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCC
Confidence            45667788888888888899999988888762   2222  2346788889999999999999999999998        


Q ss_pred             -------ChhHHHHhc-------------hhH-HHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHH
Q 019185          181 -------SLAMGVMLR-------------SPP-LVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPY  239 (345)
Q Consensus       181 -------S~~~al~lg-------------~~~-l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~  239 (345)
                             |+++|..+.             ..+ .+...+++.++.++|.      ++||.+.+++++++..++.....|.
T Consensus        85 Pl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~  158 (289)
T COG0382          85 PLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGA  158 (289)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHH
Confidence                   556664431             112 2233346788999994      7999999999999888887645555


Q ss_pred             HHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185          240 FLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA  319 (345)
Q Consensus       240 ~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~  319 (345)
                      ....      +.  .....+++.++..+|+.+++++||++|+|+|+++|++|+|+.+|++++.+++..... ..+.....
T Consensus       159 ~a~~------~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~-~~~~~~~~  229 (289)
T COG0382         159 AAVG------GS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLL-ASALLVLL  229 (289)
T ss_pred             HHHh------Cc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHH-HHHHHHHH
Confidence            4321      11  123456667788899999999999999999999999999999999999999888873 33333333


Q ss_pred             HH
Q 019185          320 GV  321 (345)
Q Consensus       320 ~~  321 (345)
                      +.
T Consensus       230 ~~  231 (289)
T COG0382         230 GL  231 (289)
T ss_pred             HH
Confidence            33

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.90  E-value=2.3e-22  Score=193.23  Aligned_cols=182  Identities=16%  Similarity=0.147  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHhccchHHHHH---HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          109 TKKLDAFYRLSRPYAWTSII---VGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~---l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      ..++++|++++||++.....   +|.+.|..+|...  ..++.   .++.++++.+++++++|++|||+|+|+|+     
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~--~~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt   80 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHG--LPPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT   80 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence            34889999999988865554   6888888888543  23332   24567788889999999999999999996     


Q ss_pred             ----------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185          181 ----------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV  236 (345)
Q Consensus       181 ----------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~  236 (345)
                                |+++|+.++             ..+... ..+.+.++.+.|+.      .||++.+++++.++.++..+.
T Consensus        81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l  154 (290)
T PRK12870         81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFAVL  154 (290)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh------hhhccccceeeehHHHHhHHH
Confidence                      556664431             012211 22345567788983      688888889888777776433


Q ss_pred             HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185          237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL  309 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll  309 (345)
                      .|+....     | ..  +...++..+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.+++....
T Consensus       155 ~g~~a~~-----g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~  219 (290)
T PRK12870        155 ISWSAVT-----G-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA  219 (290)
T ss_pred             HHHHHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH
Confidence            3443321     2 22  2234555667789999999999999999999999999999999999988776433

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.90  E-value=6.8e-22  Score=192.03  Aligned_cols=192  Identities=17%  Similarity=0.129  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHh---ccchHHHHHHHHHHHHHhhcccCC---CCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-
Q 019185          108 LTKKLDAFYRLS---RPYAWTSIIVGILSSSLLPIQSLA---DLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-  180 (345)
Q Consensus       108 ~~~~L~a~~~l~---RP~t~~~~~l~~l~G~llA~~~~~---~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-  180 (345)
                      ...+++.|++++   ||++.....+|.+.|.++|.....   ..++.   .+++++++.+++++++|++|||+|+|+|+ 
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~  102 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK  102 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            446889999999   999999999999999999865311   33332   25677889999999999999999999996 


Q ss_pred             --------------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185          181 --------------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG  232 (345)
Q Consensus       181 --------------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g  232 (345)
                                    |+++++.++              ++......+++.+..+.|+.      .||+..++++..++.++
T Consensus       103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~~~  176 (314)
T PRK12878        103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPF------MKRITWWPQFFLGLAFS  176 (314)
T ss_pred             CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHhcCCcchHHHHHHHH
Confidence                          456654331              12222233456777889983      68888777777665555


Q ss_pred             HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185          233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA  312 (345)
Q Consensus       233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a  312 (345)
                      .....|++...     | ...  ...+++.+...+|+.+.+.+++++|+|+|+++|++|+|+++|++++.+++.......
T Consensus       177 ~~~l~g~~a~~-----g-~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~  248 (314)
T PRK12878        177 WGALMGWAAHF-----G-SLS--LAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAV  248 (314)
T ss_pred             HHHHHHHHHHh-----C-CCc--hHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHH
Confidence            43224544321     2 222  233444556678999999999999999999999999999999999998886665545


Q ss_pred             HHHH
Q 019185          313 YASA  316 (345)
Q Consensus       313 yl~~  316 (345)
                      .++.
T Consensus       249 ~~~~  252 (314)
T PRK12878        249 LLMG  252 (314)
T ss_pred             HHHH
Confidence            4333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.90  E-value=6.7e-22  Score=189.60  Aligned_cols=196  Identities=17%  Similarity=0.172  Sum_probs=139.6

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhccc-CCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQS-LADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~-~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      +++.++|++||++.+.+....+.|.+.+... .+.+++.   .+++.+++.+++++++|++|||+|+|+|+         
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            3679999999988888766666666665321 1234443   25677888999999999999999999997         


Q ss_pred             ------ChhHHHHhch-------------hHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185          181 ------SLAMGVMLRS-------------PPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF  240 (345)
Q Consensus       181 ------S~~~al~lg~-------------~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~  240 (345)
                            |++++++++.             .+... ...++++..+.|+      ..||++.++++..+++++.. |++.|
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~-~l~g~  150 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVG-PVGAW  150 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHH-HHHHH
Confidence                  5566654310             12211 1124455667887      36999999999988777664 43333


Q ss_pred             HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185          241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG  320 (345)
Q Consensus       241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~  320 (345)
                      .+..    | ..  +...++..+..++|+.+.+++++++|+|+|+++|+||+|+++|+|++.+++..+..+.+++..+.+
T Consensus       151 ~a~~----g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~  223 (284)
T PRK12888        151 IAVT----G-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG  223 (284)
T ss_pred             HHHc----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3221    2 22  224455666778899999999999999999999999999999999999888777767776666666


Q ss_pred             HHh
Q 019185          321 VFS  323 (345)
Q Consensus       321 ~~~  323 (345)
                      ...
T Consensus       224 ~~~  226 (284)
T PRK12888        224 LAV  226 (284)
T ss_pred             HHh
Confidence            554

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.89  E-value=1.3e-21  Score=187.71  Aligned_cols=197  Identities=15%  Similarity=0.165  Sum_probs=139.8

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------  180 (345)
                      ++|.++|++||+....+....+.|.++|.+.  ..++.   .++..+++.+++.+++|++||++|+|+|+          
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~--~~~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGH--YIHPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4789999999999999888888898888532  12222   23455667889999999999999999998          


Q ss_pred             -----ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185          181 -----SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL  241 (345)
Q Consensus       181 -----S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~  241 (345)
                           |+++|+++.             ..+....+ .+...+...|+      .+||++.++++.++...|.. ++..|.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~-~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDP------FLKRYTAWRHIYMGSIIGLG-VLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHhCccccHHHHHHHHHhH-HHHHHH
Confidence                 566775541             01222222 23444445555      47999999999888888853 433333


Q ss_pred             HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHH
Q 019185          242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGV  321 (345)
Q Consensus       242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~  321 (345)
                      +.     ++...+....+++.+...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+++..+..++..+..+.+.
T Consensus       150 Av-----~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~  224 (286)
T PRK12895        150 AV-----IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI  224 (286)
T ss_pred             HH-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            22     1222221223345566778999999999999999999999999999999999998876666666666666665


Q ss_pred             Hhh
Q 019185          322 FSP  324 (345)
Q Consensus       322 ~~~  324 (345)
                      ...
T Consensus       225 ~~~  227 (286)
T PRK12895        225 YIR  227 (286)
T ss_pred             HHh
Confidence            444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.89  E-value=1.3e-21  Score=187.14  Aligned_cols=182  Identities=17%  Similarity=0.161  Sum_probs=129.3

Q ss_pred             HHHHHHHHHhc---cchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------
Q 019185          110 KKLDAFYRLSR---PYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------  180 (345)
Q Consensus       110 ~~L~a~~~l~R---P~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------  180 (345)
                      ++++++++++|   |.......+|.+.|..+|....  .++.   .+++++++.+++++++|++|||+|+|+|+      
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~--~~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGI--PDLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            36889999998   5555666678888888875432  2222   24566778889999999999999999996      


Q ss_pred             ---------ChhHHHHhc-------------hhHH-HHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          181 ---------SLAMGVMLR-------------SPPL-VIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       181 ---------S~~~al~lg-------------~~~l-~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                               |+++|..++             ..+. ....+++.+..+.|+.      .||++.++++..++.+|...++
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~  151 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIPM  151 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHHH
Confidence                     556664431             0111 2222345666788962      5888888999887777765445


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILL  310 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~  310 (345)
                      |+....      +..  +...++..+...+|+...+..++++|+|+|+++|++|+|+++|+|++.+.......
T Consensus       152 g~~a~~------~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~  216 (282)
T PRK12848        152 AFAAVQ------GSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA  216 (282)
T ss_pred             HHHHHh------CCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH
Confidence            544321      222  22345556667789999999999999999999999999999999998877644433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.89  E-value=2.3e-21  Score=185.50  Aligned_cols=184  Identities=17%  Similarity=0.180  Sum_probs=128.6

Q ss_pred             HHHHHhccchHHHHHHHHHHHHHhhcccCCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------------
Q 019185          114 AFYRLSRPYAWTSIIVGILSSSLLPIQSLADL-TPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------------  180 (345)
Q Consensus       114 a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------------  180 (345)
                      .++|+.||..+....++.+.|..+|... +.. ++.   ..+..+++.+++++++|++|||+|+|+|+            
T Consensus         6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~s   81 (281)
T TIGR01474         6 KLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLAS   81 (281)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCC
Confidence            4566677888888899999998888542 122 222   24556677789999999999999999996            


Q ss_pred             ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185          181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV  243 (345)
Q Consensus       181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~  243 (345)
                         |++++..++              .+......+++.++.+.|+.      .||++.++++..++.++.....|++...
T Consensus        82 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a~~  155 (281)
T TIGR01474        82 GAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGWAAVT  155 (281)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHHHHHc
Confidence               445554331              11222223456778999983      7999999999887777764334544321


Q ss_pred             hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHH
Q 019185          244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYAS  315 (345)
Q Consensus       244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~  315 (345)
                           | .  .+...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|+|++.+.......+.++.
T Consensus       156 -----g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~  219 (281)
T TIGR01474       156 -----G-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL  219 (281)
T ss_pred             -----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH
Confidence                 2 2  22234444556678999999999999999999999999999999998766555444434333

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.88  E-value=4.3e-21  Score=183.42  Aligned_cols=190  Identities=13%  Similarity=0.118  Sum_probs=133.7

Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185          111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------  180 (345)
                      ++|++++++||++.....++.+.|.++|.+.  ..++..   ++..+++.+++++++|++|||+|+|+|+          
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            4689999999999999999999999888532  234332   4567788889999999999999999998          


Q ss_pred             -----ChhHHHHhc-----------h---hHHH-HH-HHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHH
Q 019185          181 -----SLAMGVMLR-----------S---PPLV-IA-LVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPY  239 (345)
Q Consensus       181 -----S~~~al~lg-----------~---~~l~-~~-l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~  239 (345)
                           |++++..++           .   .+.. .. .+...+..+.||.     ++||+++. +..++...|...+++.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence                 556664331           1   1121 11 1233456778885     68999985 5555555555445544


Q ss_pred             HHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185          240 FLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL  318 (345)
Q Consensus       240 ~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il  318 (345)
                      |.+..     +.  .+...++..+..++|+.++....+++|.|+|+++|+||+|+++|+|++.+.......+..+...+
T Consensus       150 ~~a~~-----g~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~  221 (279)
T PRK12869        150 YASGT-----GS--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL  221 (279)
T ss_pred             HHHHh-----CC--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            44221     12  22344555667778888888888889999999999999999999999998776665544444333

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.88  E-value=4.1e-21  Score=185.00  Aligned_cols=193  Identities=16%  Similarity=0.111  Sum_probs=135.6

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      .+++++++++||+++....++.+.|.++|...  .+++.   .+++++++.+++++++|++|||+|+|+|+         
T Consensus         8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            48999999999999999999999999998532  34443   25677888999999999999999999998         


Q ss_pred             ------ChhHHHHhc-------h-------hHHHHHH-HHH-HHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH-
Q 019185          181 ------SLAMGVMLR-------S-------PPLVIAL-VLR-CILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL-  237 (345)
Q Consensus       181 ------S~~~al~lg-------~-------~~l~~~l-~l~-~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l-  237 (345)
                            |++++..++       .       .+....+ +++ ++..+.|+.     ++||++. ++..++...|...++ 
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHH
Confidence                  556654331       0       0111111 223 234668884     6899996 676665554443333 


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA  317 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i  317 (345)
                      |++..      .+..  +...+++.+..++|+.+.+..+.++|+|+|+++|+||+|+++|++++.+.+.....+.....+
T Consensus       157 g~~a~------~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~  228 (296)
T PRK04375        157 GWAAV------TGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL  228 (296)
T ss_pred             HHHHh------CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence            44332      1122  233455566777899999999999999999999999999999999988876665554444444


Q ss_pred             HHHH
Q 019185          318 LAGV  321 (345)
Q Consensus       318 l~~~  321 (345)
                      +...
T Consensus       229 ~~~~  232 (296)
T PRK04375        229 LPVL  232 (296)
T ss_pred             HHHH
Confidence            3333

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.88  E-value=5.7e-21  Score=183.58  Aligned_cols=196  Identities=17%  Similarity=0.105  Sum_probs=132.5

Q ss_pred             HHHHHHHHhc---cchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185          111 KLDAFYRLSR---PYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------  180 (345)
Q Consensus       111 ~L~a~~~l~R---P~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------  180 (345)
                      +++.|+|++|   |.......+|++.|..++.......++.   .+++++++.+++++++|++||++|+|+|+       
T Consensus         5 ~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~   81 (289)
T PLN02809          5 SLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL   81 (289)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence            5666777666   5556667778887777764211112232   24567888899999999999999999997       


Q ss_pred             --------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185          181 --------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP  238 (345)
Q Consensus       181 --------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg  238 (345)
                              |+++|+.+.             ..+... ...++.++.+.|+.      +||++.++++..++.++.....|
T Consensus        82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g  155 (289)
T PLN02809         82 RPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGALLG  155 (289)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHHHH
Confidence                    556665431             112222 22356677888983      89999999998777666532234


Q ss_pred             HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185          239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL  318 (345)
Q Consensus       239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il  318 (345)
                      +....     | .... ...+.+.+...+|+.+.+++++++|+|+|+++|++|+|+++|++...+++. +..+.+..+..
T Consensus       156 ~~av~-----g-~~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~  227 (289)
T PLN02809        156 WAAVK-----G-SLDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLAL  227 (289)
T ss_pred             HHHHh-----C-CCCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHH
Confidence            32211     2 1111 122224555668999999999999999999999999999999997777664 55556666666


Q ss_pred             HHHHh
Q 019185          319 AGVFS  323 (345)
Q Consensus       319 ~~~~~  323 (345)
                      ++...
T Consensus       228 ~g~~~  232 (289)
T PLN02809        228 SGYNA  232 (289)
T ss_pred             HHHHh
Confidence            66544

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.88  E-value=1e-20  Score=180.60  Aligned_cols=191  Identities=16%  Similarity=0.123  Sum_probs=130.5

Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------------
Q 019185          113 DAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------------  180 (345)
Q Consensus       113 ~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------------  180 (345)
                      |++++++||+++..+.++.+.|.++|.... +.++.   .+++++++.+++++++|++|||+|+|+|+            
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            368999999999999999999999985431 23443   25677888999999999999999999997            


Q ss_pred             ---ChhHHHHhc---------------hhHHHHHHHHHHH-HhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185          181 ---SLAMGVMLR---------------SPPLVIALVLRCI-LGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL  241 (345)
Q Consensus       181 ---S~~~al~lg---------------~~~l~~~l~l~~~-l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~  241 (345)
                         |++++..++               .+......+++.+ ..++||.     .+||++..+.+ ++...|.+.+++.|.
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~~~~-v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI-----WLKRRTPQNTV-IGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh-----hhccCCchhHH-HHHHHHHHHHHHHHH
Confidence               455554321               1111112223443 3788995     47999986554 444555544544443


Q ss_pred             HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185          242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG  320 (345)
Q Consensus       242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~  320 (345)
                      +.     ++..+  ...+++.+...+|+.........+|+|+|+++|+||+|+++|+|++.+.......+..+...+..
T Consensus       151 a~-----~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       151 AV-----TGSIS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             Hh-----cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22     12222  23444555667788887777788999999999999999999999998776665544444444433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.87  E-value=2.8e-20  Score=180.10  Aligned_cols=183  Identities=15%  Similarity=0.205  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------  180 (345)
                      +.+++++++++||+++....++.+.|.++|..  .+.++..   .+.++++.++.++++|++|||+|+|+|+        
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            45789999999999999999999999988843  2344432   4566778889999999999999999997        


Q ss_pred             -------ChhHHHHhc-------h-------hHHHH-HHHHH-HHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          181 -------SLAMGVMLR-------S-------PPLVI-ALVLR-CILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       181 -------S~~~al~lg-------~-------~~l~~-~l~l~-~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                             |+++++.++       .       .+... ...++ ++..+.||.     ++||++..++++.++..+.....
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~  159 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV  159 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence                   455664431       0       01111 11122 235678984     68999998888776655543223


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL  309 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll  309 (345)
                      |+...      ++..  +...+++.+..++|+.+.....++.|+|+|+++|++|+|+++|+|++.+......
T Consensus       160 G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~  223 (306)
T PRK13362        160 GYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYI  223 (306)
T ss_pred             HHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHH
Confidence            44432      2222  2245556677778999999999999999999999999999999999987554433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=4.8e-20  Score=177.82  Aligned_cols=192  Identities=17%  Similarity=0.198  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      ++++.|++++||+++.....++..|..+|....+.+++..   .++.++++.++..++|++|||+|+|+|+         
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999999999998888888742212345432   2323344445557779999999998873         


Q ss_pred             ---------------ChhHHHHh-------c-----------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHH
Q 019185          181 ---------------SLAMGVML-------R-----------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAI  227 (345)
Q Consensus       181 ---------------S~~~al~l-------g-----------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v  227 (345)
                                     |++++..+       +           .+..+...+.+.++++.|+.  .| |..+.|. +.+..
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~--~k-r~~~~p~-~~l~G  155 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV--KK-RNQKYPV-AQLLG  155 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc-ccccccH-HHHHH
Confidence                           23333222       1           01111222345677788884  11 1112352 23322


Q ss_pred             HHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHH
Q 019185          228 VIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTG  307 (345)
Q Consensus       228 ~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~  307 (345)
                      +..++. .++..+...     | .  .+...++..++.++|+.+++.+||++|+|+|+++|+||+|+++|++++.++...
T Consensus       156 ~~~~~~-~~~~g~~~~-----g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~  226 (297)
T PRK12871        156 RTDFTL-FPAAGYLCY-----G-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG  226 (297)
T ss_pred             HHHHHH-HHHHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence            223333 343334321     2 1  122345556777889999999999999999999999999999999999876665


Q ss_pred             HHHHHHHHHH
Q 019185          308 ILLMAYASAA  317 (345)
Q Consensus       308 ll~~ayl~~i  317 (345)
                      +..+..+..+
T Consensus       227 ~~~l~~l~~~  236 (297)
T PRK12871        227 FTALHFLAAI  236 (297)
T ss_pred             HHHHHHHHHH
Confidence            5554444333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.86  E-value=4.1e-20  Score=177.99  Aligned_cols=159  Identities=23%  Similarity=0.276  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhhhhhccccccc---------ChhHHHHh-------c-------hhHHHHHHHHHHHHhHhccCCc--c
Q 019185          158 VPTIMMNIFVVAINQLSDIAIDK---------SLAMGVML-------R-------SPPLVIALVLRCILGAAYSIDL--P  212 (345)
Q Consensus       158 la~~l~~~a~~~iNDy~D~eiD~---------S~~~al~l-------g-------~~~l~~~l~l~~~l~~~YS~~~--p  212 (345)
                      +++.+...++|++|||+|+|+|+         |++.++.+       |       ++.  ...+++.+.+++||.+.  +
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~s~~~a~~ls~la~llGl~La~~~g~~--ll~ll~~l~g~lYS~Glk~~  142 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGSNKKIGLLVSLLAFLLGTYILAMDGML--LLAFLPFITGYLYSKGIKIG  142 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCccccccCHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhcCCCCCC
Confidence            34557799999999999999998         44444332       1       222  22346788999999621  1


Q ss_pred             --cccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCc
Q 019185          213 --LLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIR  290 (345)
Q Consensus       213 --P~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~  290 (345)
                        |+|+|+++.+||+.++..||.....+.    +..  ..  .. .......++.....++++++||++|+|||+++|++
T Consensus       143 P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~--~~--~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k  213 (307)
T PRK13591        143 KFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY--CG--SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK  213 (307)
T ss_pred             CccccccCCCchhHHHHHHHHHHHHHHHH----Hhh--hh--hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence              458999999999999999998432211    110  00  01 01111122222334778899999999999999999


Q ss_pred             ccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 019185          291 TLPVILGKERVLSMSTGILLMAYASAALAGVFSPILL  327 (345)
Q Consensus       291 TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~  327 (345)
                      |+|+++|+++++++..++..++|++.++...+.-.++
T Consensus       214 TLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~  250 (307)
T PRK13591        214 TLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAF  250 (307)
T ss_pred             eEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999888876664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.86  E-value=7.2e-20  Score=176.37  Aligned_cols=203  Identities=19%  Similarity=0.254  Sum_probs=136.2

Q ss_pred             HHHHHHHHHhcc-chHHHHHHHHHHHHHhhcc---cCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185          110 KKLDAFYRLSRP-YAWTSIIVGILSSSLLPIQ---SLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----  180 (345)
Q Consensus       110 ~~L~a~~~l~RP-~t~~~~~l~~l~G~llA~~---~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----  180 (345)
                      ++++.+.|++|- ||.+...+.+ .|.++|..   ...+ ++++.+..+++..++.+++++++|++|||+|+|+|+    
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R   80 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLS-ASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR   80 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence            368899999995 7777666665 47777741   0011 112222335677888899999999999999999998    


Q ss_pred             -----------ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHh
Q 019185          181 -----------SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINN  235 (345)
Q Consensus       181 -----------S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~  235 (345)
                                 |+++|+.++             ..++...+ .++.++.+.||      .+||++++++++.+++.+...
T Consensus        81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~~~  154 (300)
T PRK12876         81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYLAI  154 (300)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHHHH
Confidence                       556665441             01222222 34566678898      489999999998777766632


Q ss_pred             HHHHHHHhhhhhcCCcccchH--HHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185          236 VLPYFLHVQKYVLGRPVVFTK--PLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY  313 (345)
Q Consensus       236 ~lg~~~~~~~~~~g~~~~~~~--~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay  313 (345)
                      ..++.. ..    +.+..+..  ..++..+...+|..+.+++++++|+|+|++.|+||+|+++|++++.+++..+..+..
T Consensus       155 l~~~~A-v~----~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~  229 (300)
T PRK12876        155 LMNFFA-II----ETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA  229 (300)
T ss_pred             HHHHHH-Hh----cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence            234332 21    22111100  112223344567789999999999999999999999999999998888777776666


Q ss_pred             HHHHHHHHHhh
Q 019185          314 ASAALAGVFSP  324 (345)
Q Consensus       314 l~~il~~~~~~  324 (345)
                      +..++.+....
T Consensus       230 ~~l~~~g~~~~  240 (300)
T PRK12876        230 IAYLLIGYFVS  240 (300)
T ss_pred             HHHHHHHHHhh
Confidence            66666665554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.82  E-value=8.7e-19  Score=162.71  Aligned_cols=163  Identities=25%  Similarity=0.431  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------------ChhHHHHh-
Q 019185          125 TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------SLAMGVML-  188 (345)
Q Consensus       125 ~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------------S~~~al~l-  188 (345)
                      ..+..+++.|...+..  ...++..   +..++++.++.+.++|.+|||+|+|.|+               |++++..+ 
T Consensus         2 ~~~~~~~l~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~   76 (257)
T PF01040_consen    2 PLSFLPVLAGLALASG--GPFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFA   76 (257)
T ss_pred             hHHHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHH
Confidence            4566777777444433  3344432   4556667779999999999999999998               12222211 


Q ss_pred             ----------c---hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccch
Q 019185          189 ----------R---SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFT  255 (345)
Q Consensus       189 ----------g---~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~  255 (345)
                                +   .+......+++.+.+++||   ||+|+||+++++++++++.++.....+.+..      ++..  +
T Consensus        77 ~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~  145 (257)
T PF01040_consen   77 LILLLLGLLLALLLGPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGDP--P  145 (257)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCcc--c
Confidence                      1   1223333345667779999   8999999999999999888876534444431      2221  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHH
Q 019185          256 KPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLS  303 (345)
Q Consensus       256 ~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~  303 (345)
                      .+.+....+..++.......+|++|+|+|+++|++|+|+++|++++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            344555556667888888899999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=2.4e-18  Score=165.56  Aligned_cols=196  Identities=19%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             HHHHHHHHhccchH---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185          111 KLDAFYRLSRPYAW---TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~---~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------  180 (345)
                      +++.|++++||+.+   ....+|.+.|..++...  ..++.   ..+.++++.+++.++++++||+.|+|+|+       
T Consensus         6 ~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   80 (294)
T PRK12873          6 KLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKN   80 (294)
T ss_pred             hHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCC
Confidence            67899999766555   45556777776665322  12222   35677889999999999999999999997       


Q ss_pred             --------ChhHHHHhch----------h-------HHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185          181 --------SLAMGVMLRS----------P-------PLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN  234 (345)
Q Consensus       181 --------S~~~al~lg~----------~-------~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i  234 (345)
                              |+++|++++.          .       +....+ .++.+....|+.      .||+..+.+++.++..+..
T Consensus        81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~  154 (294)
T PRK12873         81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPS------AKRWFAYPQAILALCWGFA  154 (294)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHhccccchHHHHHHHHhH
Confidence                    5566655410          0       111111 245566778883      7999988898887766663


Q ss_pred             hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185          235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA  314 (345)
Q Consensus       235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl  314 (345)
                      ..+|+.+..     | ...+....+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|+ ++..+...+..+..+
T Consensus       155 ~l~gw~Av~-----g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~  227 (294)
T PRK12873        155 VLIPWAAAE-----G-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSI  227 (294)
T ss_pred             HHHHHHHHh-----C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHH
Confidence            223443321     2 222222334444567789999999999999999999999999999997 566666666666666


Q ss_pred             HHHHHHHHhh
Q 019185          315 SAALAGVFSP  324 (345)
Q Consensus       315 ~~il~~~~~~  324 (345)
                      ++..++....
T Consensus       228 ll~~~g~~~~  237 (294)
T PRK12873        228 FLALAAFIAQ  237 (294)
T ss_pred             HHHHHHHHhC
Confidence            6666666554

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.70  E-value=8.6e-16  Score=147.26  Aligned_cols=194  Identities=11%  Similarity=0.141  Sum_probs=119.9

Q ss_pred             HHHHHHHHHhcc---chHHHHHHHHHHHHHhh-cc-cCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185          110 KKLDAFYRLSRP---YAWTSIIVGILSSSLLP-IQ-SLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----  180 (345)
Q Consensus       110 ~~L~a~~~l~RP---~t~~~~~l~~l~G~llA-~~-~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----  180 (345)
                      ++++-|.+..=|   +......+.+- -+... .. +..+|.+.  .+.+++++..++..+++|++|||+|+|+|+    
T Consensus         3 k~~~iy~~e~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P   79 (299)
T PRK13592          3 KRLNVYLKEMYPLLPRLILSLTLFFE-IYMITLLSNHISSFRIG--IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP   79 (299)
T ss_pred             hhHHHHHHHhccchhhhHHHHHHHHH-HHHHhhhccCCCCCCCc--hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence            355666666544   44444443332 22222 11 22334332  356677777889999999999999999998    


Q ss_pred             ---------ChhHHHHhch---------hHHHHHHHHHHHHhHhc-----cCCcccccccccCcchhHHHHHHHHHHh--
Q 019185          181 ---------SLAMGVMLRS---------PPLVIALVLRCILGAAY-----SIDLPLLRWKASPLMAAVAIVIGNGINN--  235 (345)
Q Consensus       181 ---------S~~~al~lg~---------~~l~~~l~l~~~l~~~Y-----S~~~pP~rlKr~pllg~L~v~~~~g~i~--  235 (345)
                               |++++..++.         ..+....+...+..+.|     +.     ++|+.++.||+.++...|...  
T Consensus        80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~  154 (299)
T PRK13592         80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMM  154 (299)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhh
Confidence                     6677755431         11111112445677888     75     789999999999877666432  


Q ss_pred             HHHHHHH-hhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185          236 VLPYFLH-VQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA  314 (345)
Q Consensus       236 ~lg~~~~-~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl  314 (345)
                      .++++.. .+....|.+. .....++..+..++.++++|+.||++| |||++ |.+|+|+++|+|++.+++..+..+..+
T Consensus       155 g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        155 ILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             chhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence            1233321 1111112111 111112334455567899999999999 88886 599999999999999999888664444

>PLN02776 prenyltransferase

Probab=99.58  E-value=2.5e-13  Score=133.15  Aligned_cols=176  Identities=13%  Similarity=0.039  Sum_probs=116.9

Q ss_pred             HhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------------Ch
Q 019185          118 LSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------SL  182 (345)
Q Consensus       118 l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------------S~  182 (345)
                      ++||+.....+++.+.|+++|....  .++.   .++.++++.+++.+++|++||++|+|+|+               |+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~--~~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEA--IDLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            4689999999999999999985422  2332   24567788899999999999999999996               55


Q ss_pred             hHHHHhc-------h-------hHHHHHH-HHHHH-HhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhh
Q 019185          183 AMGVMLR-------S-------PPLVIAL-VLRCI-LGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKY  246 (345)
Q Consensus       183 ~~al~lg-------~-------~~l~~~l-~l~~~-l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~  246 (345)
                      ++|++++       .       .+....+ +++.+ ....|+      .+||+..+ +..++...|.+.|+..|.+..  
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt--  146 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAAAS--  146 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence            6664432       1       0111111 12222 345788      37999986 567777777555654444321  


Q ss_pred             hcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhh--ChHhHHHHHHHHHHHH
Q 019185          247 VLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVIL--GKERVLSMSTGILLMA  312 (345)
Q Consensus       247 ~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~l--G~k~a~~l~~~ll~~a  312 (345)
                         +...  ...+++.+...+|+......-.+.|.|+|+++|++++|+.-  |++.++.+......+.
T Consensus       147 ---g~~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~  209 (341)
T PLN02776        147 ---GQLD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLA  209 (341)
T ss_pred             ---CCCC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHH
Confidence               2222  23445566667888877777778888899999999999976  4565555554444333

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.3e-13  Score=132.09  Aligned_cols=190  Identities=18%  Similarity=0.193  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------  180 (345)
                      .+++|+|++++||+.+....++...|..+|..  ...++..   ++.++++..+..++++++|+++|+|+|+        
T Consensus        15 ~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          15 RSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             HHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            56899999999999999999999999999965  2344443   5778889999999999999999999997        


Q ss_pred             -------ChhHHHHhch---------------hHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185          181 -------SLAMGVMLRS---------------PPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL  237 (345)
Q Consensus       181 -------S~~~al~lg~---------------~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l  237 (345)
                             ++++++.+|.               +...+.. +--++..+.||.     -+||+... |.+++..-|.+.|+
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~-NiviGg~aGa~Ppl  163 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQ-NIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCccc-ceeeeecccccccc
Confidence                   5566655421               1111111 223567888997     47999984 66665555554554


Q ss_pred             -HHHHHhhhhhcCCcccchHHHHHHHHHHH----HHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185          238 -PYFLHVQKYVLGRPVVFTKPLLFAVAFSA----IFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA  312 (345)
Q Consensus       238 -g~~~~~~~~~~g~~~~~~~~~~l~~l~~~----l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a  312 (345)
                       |+.++.      +..+.....++..+|+|    +|++++..-+|.      +++|+..+|++-|++.+++-...-..+.
T Consensus       164 iGwaAvt------g~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY------~~AgiPMlPvv~G~~~t~~~I~~y~~~l  231 (304)
T COG0109         164 IGWAAVT------GSISLGAILLFAIIFLWTPPHFWALALKYKDDY------KAAGIPMLPVVKGERRTKRQILLYTLAL  231 (304)
T ss_pred             ceeeeee------CCCCchHHHHHHHHHHhccHHHHHHHHHHHHHH------HHcCCCcccccccHHHHHHHHHHHHHHH
Confidence             554332      23334444455666666    677777666666      8999999999999999986654444333


Q ss_pred             HHHHHHHHH
Q 019185          313 YASAALAGV  321 (345)
Q Consensus       313 yl~~il~~~  321 (345)
                      ..+.++...
T Consensus       232 ~~~sl~~~~  240 (304)
T COG0109         232 APVSLLLAL  240 (304)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.52  E-value=8.2e-13  Score=127.52  Aligned_cols=116  Identities=23%  Similarity=0.409  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------  180 (345)
                      .++++++++++||+.|....+.+.. .+++... .+..  .+...+.++++.++..+++|++||++|+|+|+        
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            4589999999999999999987664 4555332 1111  12235567777778899999999999999998        


Q ss_pred             -------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHH
Q 019185          181 -------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGI  233 (345)
Q Consensus       181 -------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~  233 (345)
                             |+++|++++              .+......+..+++.++||.     ++||+++++++++++.++.
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l  152 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL  152 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence                   455664431              11112222456778889996     7899999999998766654

>PRK08238 hypothetical protein; Validated

Probab=99.48  E-value=7.5e-13  Score=135.52  Aligned_cols=164  Identities=20%  Similarity=0.301  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185          106 DFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-----  180 (345)
Q Consensus       106 ~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-----  180 (345)
                      ++.+.++++|++++||+.|....+.++ +.+.+... .  ++..+...++++++..++.+++|++||++|+|+|+     
T Consensus       185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~~-~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk  260 (479)
T PRK08238        185 PPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQF-G--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK  260 (479)
T ss_pred             CCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhccc-C--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence            444668999999999999999999865 76666321 1  22222345677888889999999999999999998     


Q ss_pred             ----------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185          181 ----------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV  236 (345)
Q Consensus       181 ----------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~  236 (345)
                                |+++|++++              ++.....++..+++.++||.     ++||.++++++++++.++.-+.
T Consensus       261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~  335 (479)
T PRK08238        261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII  335 (479)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence                      455664431              12222223456778889995     7999999999998776655323


Q ss_pred             HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCC
Q 019185          237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGI  289 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi  289 (345)
                      .|...      .+  ...  +.|+. ++..++.+...+.|...|+++++..|.
T Consensus       336 ~G~~a------~~--~~~--s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        336 AGAAA------IG--VAL--SFWLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHH------hc--cCH--HHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            33321      12  122  23332 233355678888999999999888886

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.40  E-value=4.2e-13  Score=126.02  Aligned_cols=206  Identities=16%  Similarity=0.074  Sum_probs=131.4

Q ss_pred             HHHHHHHHhccchH---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185          111 KLDAFYRLSRPYAW---TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------  180 (345)
Q Consensus       111 ~L~a~~~l~RP~t~---~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------  180 (345)
                      +++.|-+++|-..-   ....+|..-..++|..  +...+. +--..++-+++++|.++++++||+.|+|+|.       
T Consensus        63 r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd--ag~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtkl  139 (353)
T KOG1381|consen   63 RWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD--AGLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKL  139 (353)
T ss_pred             cchhHHHHHhcCCCceeeeeecchHHHHHhccC--CCccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcc
Confidence            57778777774443   3445566556666652  222221 1123455678899999999999999999996       


Q ss_pred             --------ChhHHHHh-c-------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHH--HHHHHhH
Q 019185          181 --------SLAMGVML-R-------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVI--GNGINNV  236 (345)
Q Consensus       181 --------S~~~al~l-g-------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~--~~g~i~~  236 (345)
                              |+++|+.+ +             .|.-...+..++...+.|+      -+||.+++.+++.+.  .||.+  
T Consensus       140 RPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~yp------l~kr~TY~pq~vLgltfnwGAl--  211 (353)
T KOG1381|consen  140 RPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYP------LMKRFTYWPQLVLGLTFNWGAL--  211 (353)
T ss_pred             cccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEee------hhhhcchhHHHHHhhhcchhhh--
Confidence                    67787665 1             1112222234666777788      479999888887543  34432  


Q ss_pred             HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185          237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA  316 (345)
Q Consensus       237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~  316 (345)
                      +|+-+ +     ++.. .+...+.+++...+|++..+.+++++|-++|.+.|+++.+.|+|++.-.|+..+- .+....+
T Consensus       212 lGw~A-~-----~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~~ia~L  283 (353)
T KOG1381|consen  212 LGWCA-L-----KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AAQIASL  283 (353)
T ss_pred             hcchh-h-----cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HHHHHHH
Confidence            23221 1     2222 1222344566666899999999999999999999999999999988666665443 3445555


Q ss_pred             HHHHHHhhHH--HHHHHHHHH
Q 019185          317 ALAGVFSPIL--LCKLVTMIG  335 (345)
Q Consensus       317 il~~~~~~~~--~~~~~~~~~  335 (345)
                      .++++.+-..  +..++.++|
T Consensus       284 a~aG~~s~q~~pyy~~lg~~~  304 (353)
T KOG1381|consen  284 AAAGIASDQTWPYYAALGAVA  304 (353)
T ss_pred             HHhhhccCCCchHHHHHHHHH
Confidence            5666666433  335555555

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.29  E-value=2.3e-12  Score=118.70  Aligned_cols=213  Identities=17%  Similarity=0.176  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc------
Q 019185          109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK------  180 (345)
Q Consensus       109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~------  180 (345)
                      ..+.+.|+-..||+.+-.++.|..+|.++|+.+-...++.. ..+.++..+....+.++|.+|.|||.  .+|.      
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l-~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr  136 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL-ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR  136 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH-HHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence            45788999999999999999999999999987432222221 12334445556689999999999997  3554      


Q ss_pred             -------C----hhHHHHh---c----------hh---HHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185          181 -------S----LAMGVML---R----------SP---PLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG  232 (345)
Q Consensus       181 -------S----~~~al~l---g----------~~---~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g  232 (345)
                             .    .+.|.++   |          ++   .-+..+ +.++--...|+   +.+.+|+..+ |.+++.+.+|
T Consensus       137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflyt---ggigfkyial-gdliili~fg  212 (359)
T KOG4581|consen  137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYT---GGIGFKYIAL-GDLIILILFG  212 (359)
T ss_pred             hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEe---cccceEEEec-cCEEEEEeec
Confidence                   1    1223222   1          00   111111 23444567788   4568898887 8888777777


Q ss_pred             HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185          233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA  312 (345)
Q Consensus       233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a  312 (345)
                      .+..+-.|. .|+   | ...+  ..+-.+++..+-+-++...|+-+|.|.||++|+.|+++.+|+..+..++..++.++
T Consensus       213 piavlfaf~-~q~---g-~l~~--~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~p  285 (359)
T KOG4581|consen  213 PIAVLFAFA-IQT---G-HLAI--FPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAP  285 (359)
T ss_pred             hHHHHHHHH-Hhc---C-ceeE--EeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHH
Confidence            653322221 222   1 1122  12234556667788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHH
Q 019185          313 YASAALAGVFSPILLCKLVTM  333 (345)
Q Consensus       313 yl~~il~~~~~~~~~~~~~~~  333 (345)
                      |.+....+.-.+.++......
T Consensus       286 y~lf~i~~~~~si~~~lpllt  306 (359)
T KOG4581|consen  286 YLLFFIFALHCSISFALPLLT  306 (359)
T ss_pred             HHHHHHHHHHHHHHHHhHHhh
Confidence            999999988888777654443

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=97.70  E-value=5.5e-05  Score=73.50  Aligned_cols=181  Identities=20%  Similarity=0.193  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185          110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------  180 (345)
Q Consensus       110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------  180 (345)
                      +.++.|+++++|+--...++....|+++|-..   +++..   ++..-++..+..++.|.+|++++.+.|+         
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            46789999999988888888887888888542   44443   5667788899999999999999999997         


Q ss_pred             ------ChhHHHHh--------------chhHHHHHHHH--HHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH-
Q 019185          181 ------SLAMGVML--------------RSPPLVIALVL--RCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL-  237 (345)
Q Consensus       181 ------S~~~al~l--------------g~~~l~~~l~l--~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l-  237 (345)
                            |+..|+.+              +..|+..++..  -++.++.|+      ++||.-. .|-.++..-|.+.|+ 
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihi-inTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHI-INTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhh-hhhHHHHHhccCCccc
Confidence                  44444443              12344433322  246677888      5898886 455555556666665 


Q ss_pred             HHHHHhhhhhcCCcccchHHHHHHHHHHH----HHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHH
Q 019185          238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSA----IFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILL  310 (345)
Q Consensus       238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~----l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~  310 (345)
                      |+....+      ........+...++.|    |.+++..+-+|.      .++|.+.+++.   +-++.+.+....++.
T Consensus       239 GwAAasg------~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DY------s~~GY~Mma~~np~l~rr~alr~s~a~~~  306 (409)
T KOG1380|consen  239 GWAAASG------LLDPGAMILAGILYAWQFPHFNALSWNLRNDY------SKAGYRMMAVTNPGLCRRVALRYSLAFLP  306 (409)
T ss_pred             hhhhhcc------CCCccHHHHHHHHHHhcccchhhhhhhhchhh------hhccEEEEEeeccchhhHHHHHHHHHHhh
Confidence            5543322      1111112222223333    333444444444      78999999875   555667777777766


Q ss_pred             HHHHH
Q 019185          311 MAYAS  315 (345)
Q Consensus       311 ~ayl~  315 (345)
                      +.|..
T Consensus       307 L~~~~  311 (409)
T KOG1380|consen  307 LSYAA  311 (409)
T ss_pred             hhccc
Confidence            66443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=91.67  E-value=1.6  Score=41.48  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHhcCCcccchhhCh---HhHHHHHHHHH
Q 019185          264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGK---ERVLSMSTGIL  309 (345)
Q Consensus       264 ~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~---k~a~~l~~~ll  309 (345)
                      ...+...+..++||+-|.|.|++. ++.-|..-|+   +.+..++..+.
T Consensus        45 ~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~   92 (279)
T PRK12884         45 TAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLF   92 (279)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence            344556777899999999999998 6777777774   44554444443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=90.12  E-value=2.4  Score=41.22  Aligned_cols=50  Identities=12%  Similarity=0.122  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHHHHHHH
Q 019185          265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILLMAYAS  315 (345)
Q Consensus       265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~~ayl~  315 (345)
                      ..+...+...+||+-|.|.|++.+. +=|+.   +..+.+..+...+..++.+.
T Consensus        63 ~~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~~l  115 (306)
T TIGR02056        63 GPCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGIAI  115 (306)
T ss_pred             HHHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            3456677899999999999987763 34444   44566665555554443333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.48  E-value=4  Score=38.85  Aligned_cols=29  Identities=10%  Similarity=0.199  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHhcCC
Q 019185          261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGI  289 (345)
Q Consensus       261 ~~l~~~l~~~~~~i~~di~DiegDr~~Gi  289 (345)
                      ..+...+...+...+||+.|.|.|+.+..
T Consensus        41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         41 LLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            34445566788899999999999987543

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=88.21  E-value=2.8  Score=38.54  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhCCChHHHHhc-CCcccchhhCh
Q 019185          267 IFSIVLSLLKDIPDVEGDKKS-GIRTLPVILGK  298 (345)
Q Consensus       267 l~~~~~~i~~di~DiegDr~~-Gi~TlpV~lG~  298 (345)
                      +...+....||+.|.|.|+.. +++.-|..-|+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~   66 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR   66 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence            566788899999999999996 34444444444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13592 ubiA prenyltransferase; Provisional

Probab=87.96  E-value=8.5  Score=37.67  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHHHHHHH
Q 019185          265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGILLMAYA  314 (345)
Q Consensus       265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll~~ayl  314 (345)
                      .++.+.+..++||+.|+|-|+.+ +..-|.-=|   ++.++.++..+..++..
T Consensus        55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l~  106 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSVL  106 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            44556778999999999999664 444444444   45566555555443333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=87.69  E-value=3.7  Score=40.01  Aligned_cols=46  Identities=24%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhhCCChHHHHhc-CCcccch---hhChHhHHHHHHHHHHH
Q 019185          266 AIFSIVLSLLKDIPDVEGDKKS-GIRTLPV---ILGKERVLSMSTGILLM  311 (345)
Q Consensus       266 ~l~~~~~~i~~di~DiegDr~~-Gi~TlpV---~lG~k~a~~l~~~ll~~  311 (345)
                      ++...+..++||+.|+|.|+++ .++.=|.   ++..+.+..++..++.+
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~  105 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVA  105 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHH
Confidence            3445677899999999999986 2233333   34556565555544443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=86.15  E-value=5.6  Score=38.57  Aligned_cols=76  Identities=11%  Similarity=-0.010  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhhCCChHHHHhcCC-cccc---hhhChHhHHHHHHHHHHHHHHHHH------------HHHHHhhHHHHHH
Q 019185          267 IFSIVLSLLKDIPDVEGDKKSGI-RTLP---VILGKERVLSMSTGILLMAYASAA------------LAGVFSPILLCKL  330 (345)
Q Consensus       267 l~~~~~~i~~di~DiegDr~~Gi-~Tlp---V~lG~k~a~~l~~~ll~~ayl~~i------------l~~~~~~~~~~~~  330 (345)
                      +...+-..+||+-|+|-|++.-+ +.=|   -++..+.+..+...+..+...+..            ...+...+||.|=
T Consensus        48 ~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR  127 (286)
T PRK12895         48 SARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKR  127 (286)
T ss_pred             HHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567789999999999988733 1233   344455565555444333322111            1112223455566


Q ss_pred             HHHHHHHHHHHH
Q 019185          331 VTMIGHSVLGFI  342 (345)
Q Consensus       331 ~~~~~~~~~~~~  342 (345)
                      .|..+|.++++.
T Consensus       128 ~t~~~~~~lG~~  139 (286)
T PRK12895        128 YTAWRHIYMGSI  139 (286)
T ss_pred             CccccHHHHHHH
Confidence            666666665543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=84.86  E-value=6.1  Score=37.93  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh
Q 019185          261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK  298 (345)
Q Consensus       261 ~~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~  298 (345)
                      ..+...+...+...+||+.|+|-|+++-. +.-|..-|+
T Consensus        52 ~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          52 AFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            33344456688899999999999998876 344444443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=82.99  E-value=7.3  Score=37.73  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh
Q 019185          265 SAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK  298 (345)
Q Consensus       265 ~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~  298 (345)
                      ..+...+-..+||+.|+|-|++..+ +.-|..-|+
T Consensus        54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            3455577789999999999998655 567766674

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=81.77  E-value=12  Score=35.77  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHHH
Q 019185          264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILLM  311 (345)
Q Consensus       264 ~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~~  311 (345)
                      ...+...+-.++||+-|+|.|++.. +.-|..   +.++.+..++..+..+
T Consensus        45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~   94 (279)
T PRK09573         45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIV   94 (279)
T ss_pred             HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence            3445567778999999999999764 444444   4456666555555443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=81.35  E-value=9.1  Score=37.32  Aligned_cols=45  Identities=20%  Similarity=0.127  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh---HhHHHHHHHH
Q 019185          264 FSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK---ERVLSMSTGI  308 (345)
Q Consensus       264 ~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~---k~a~~l~~~l  308 (345)
                      ..++...+-..+||+-|+|-|++.-+ +.-|..-|+   +.+..+...+
T Consensus        52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~  100 (294)
T PRK12873         52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence            33455677789999999999998776 566655554   5555444443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=81.28  E-value=18  Score=35.33  Aligned_cols=48  Identities=23%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhhCCChHHHHhcCCcccch---hhChHhHHHHHHHHHHH
Q 019185          263 AFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPV---ILGKERVLSMSTGILLM  311 (345)
Q Consensus       263 l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV---~lG~k~a~~l~~~ll~~  311 (345)
                      .+..........+||+-|.|.|+++-.+ -+.   ++.++.+..+...+...
T Consensus        54 ~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~  104 (292)
T PRK13595         54 YLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLL  104 (292)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHH
Confidence            3344556778999999999999866543 232   44455555544434333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=81.02  E-value=11  Score=35.88  Aligned_cols=45  Identities=18%  Similarity=0.123  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHHH
Q 019185          265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGILL  310 (345)
Q Consensus       265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll~  310 (345)
                      ..+...+-.++||+-|+|-|++.. +.=|..-|   .+.+..++..+..
T Consensus        47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~   94 (276)
T PRK12882         47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFA   94 (276)
T ss_pred             HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHH
Confidence            334557778999999999999754 55666555   4555555544443

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=80.65  E-value=16  Score=35.76  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             HHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHH
Q 019185          273 SLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGI  308 (345)
Q Consensus       273 ~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~l  308 (345)
                      ..+||+.|+|-|+.+ +++.|..=|   ++.+..+...+
T Consensus        70 ~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~  107 (308)
T PRK12887         70 VGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIIT  107 (308)
T ss_pred             HHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHH
Confidence            339999999999964 466665444   44444444333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=80.61  E-value=9.5  Score=37.27  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhCCChHHHHhcCCcccch---hhChHhHHHHHHHHHHH
Q 019185          267 IFSIVLSLLKDIPDVEGDKKSGIRTLPV---ILGKERVLSMSTGILLM  311 (345)
Q Consensus       267 l~~~~~~i~~di~DiegDr~~Gi~TlpV---~lG~k~a~~l~~~ll~~  311 (345)
                      +...+..++||+-|.|.|++.+ ++=|.   ++.++.+..+...+..+
T Consensus        76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~  122 (314)
T PRK07566         76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVL  122 (314)
T ss_pred             HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHH
Confidence            3457778999999999998754 34444   34456666665555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 51/370 (13%), Positives = 111/370 (30%), Gaps = 103/370 (27%)

Query: 19  QQNGTVKTF-QSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYH--- 74
           +Q   V+ F +  L   Y         +      +   +    +++ N+  +  +Y+   
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 75  -KPLK------------------------KST-VPMALQDDSATKSQNENIVSTSF-LDF 107
            +P                          K+                +  I    F L+ 
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI----FWLNL 189

Query: 108 --------LTKKLDAFYR------LSRPYAWTSIIVGI--LSSSLLPIQSLADLTPTFLI 151
                   + + L            SR    ++I + I  + + L  +          L+
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 152 -------EVLKP-------IVPTIMMNIF-VVAINQLSDIAIDKSLAMGVMLRSPPLVIA 196
                  +           ++ T    +   ++    + I++D   +M +   +P  V +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTL---TPDEVKS 305

Query: 197 LVLRCILGAAYSIDLPLLRWKASPL-MAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFT 255
           L+L+  L      DLP      +P  ++ +A  I +G+      + HV    L   +  +
Sbjct: 306 LLLKY-LDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESS 362

Query: 256 ----KPLLFAVAFS--AIF-------SIVLSLL------KDIPD----------VEGDKK 286
               +P  +   F   ++F       +I+LSL+       D+            VE   K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 287 SGIRTLPVIL 296
               ++P I 
Sbjct: 423 ESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00