Citrus Sinensis ID: 019240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
cccccccHHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHcccccccccEEEEcccccccccccccEEEcccHHHHHHHHHHHcccccccccccEEEEEEEEccccccccEEEEEEEEEccccEEEEEcccccccccccccccEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEEEEEccc
cHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccEEEEccHHHHHHHHHHHHccEEEEccccccEEEEEEEccccHHHEEEEEEEEEccccEEEEEccccccHHHHHHHHHHEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccEEEEEEEEEEcccccEccccccccccccccccHHHHccccccccHHHHHHHHccccEEEccccEEEEEccHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHHccccEEEEEEccccEEEEEEEcc
MARKKIREYDSKRLLKEHLKRLAGLDLqicsaqvtestdfseltnkepwlsssrlvvkpdmlfgkrgkSGLVALNLDLAQVAEFVKGRlgtevemggckgpittfivepfvphnqEYYLSIVSdrlgctisfsecggieieenwDKVKTIflptekhmtldacapliatlplefrgkigDFIMGVFAVFqdldfsfiemnpftlvngepypldmrgelddTAAFKNFKkwaniefplpfgrvlsstESFIHSldektsaslkftvlnpkgrIWTMVAGGGASVIYADtvgdlgyaselgnyaeysgapneEEVLQYARVVIDvrdftnfglffgTQALYVSWQF
markkireydskrLLKEHLKRLAGLDLQICSAQVtestdfseltnkepwlsssrlvVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSEcggieieenwDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSldektsaslkFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
**************LKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSW**
*ARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSL*EKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVT*********NKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
*ARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
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MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDVRDFTNFGLFFGTQALYVSWQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q2QZ86423 ATP-citrate synthase alph yes no 0.936 0.761 0.913 1e-174
O80526424 ATP-citrate synthase alph yes no 0.936 0.759 0.903 1e-172
Q2QNG7423 ATP-citrate synthase alph no no 0.936 0.761 0.891 1e-171
Q9SGY2423 ATP-citrate synthase alph no no 0.936 0.761 0.819 1e-157
O22718423 ATP-citrate synthase alph no no 0.936 0.761 0.807 1e-157
Q53JY8407 ATP-citrate synthase subu no no 0.886 0.749 0.842 1e-156
Q91V92 1091 ATP-citrate synthase OS=M yes no 0.938 0.296 0.423 4e-69
P16638 1100 ATP-citrate synthase OS=R yes no 0.938 0.293 0.414 9e-69
Q2TCH3 1101 ATP-citrate synthase OS=O N/A no 0.938 0.293 0.411 7e-68
Q32PF2 1091 ATP-citrate synthase OS=B yes no 0.938 0.296 0.407 1e-67
>sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2 OS=Oryza sativa subsp. japonica GN=ACLA-2 PE=2 SV=2 Back     alignment and function desciption
 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 294/322 (91%), Positives = 307/322 (95%)

Query: 1   MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
           MARKKIREYDSKRLLKEHLKRLAG+DLQI SAQVT+STDF+EL N++PWLS+ +LVVKPD
Sbjct: 1   MARKKIREYDSKRLLKEHLKRLAGIDLQILSAQVTQSTDFTELVNQQPWLSTMKLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 120
           MLFGKRGKSGLVALNLD+AQV EFVK RLG EVEMGGCK PITTFIVEPFVPH+QEYYLS
Sbjct: 61  MLFGKRGKSGLVALNLDIAQVKEFVKERLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLS 120

Query: 121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 180
           IVS+RLG TISFSECGGIEIEENWDKVKTIFLPTEK MT DACAPLIATLPLE RGKIGD
Sbjct: 121 IVSERLGSTISFSECGGIEIEENWDKVKTIFLPTEKPMTPDACAPLIATLPLEARGKIGD 180

Query: 181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 240
           FI GVFAVFQDLDFSF+EMNPFT+VNGEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFSFLEMNPFTIVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 241 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           RVLSSTE FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEEEVLQYARVVID 322
           YAEYSGAPNEEEVLQYARVV+D
Sbjct: 301 YAEYSGAPNEEEVLQYARVVLD 322
ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 8
>sp|O80526|ACLA3_ARATH ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q2QNG7|ACLA3_ORYSJ ATP-citrate synthase alpha chain protein 3 OS=Oryza sativa subsp. japonica GN=ACLA-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1 Back     alignment and function description
>sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1 Back     alignment and function description
>sp|Q53JY8|ACLA1_ORYSJ ATP-citrate synthase subunit alpha chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLA-1 PE=3 SV=2 Back     alignment and function description
>sp|Q91V92|ACLY_MOUSE ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|P16638|ACLY_RAT ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1 Back     alignment and function description
>sp|Q2TCH3|ACLY_SHEEP ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1 Back     alignment and function description
>sp|Q32PF2|ACLY_BOVIN ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
255543008423 ATP-citrate synthase, putative [Ricinus 0.936 0.761 0.944 1e-179
449435576423 PREDICTED: ATP-citrate synthase alpha ch 0.936 0.761 0.931 1e-177
224124562423 predicted protein [Populus trichocarpa] 0.936 0.761 0.922 1e-176
225450474423 PREDICTED: ATP-citrate synthase alpha ch 0.936 0.761 0.925 1e-175
378405606423 ATP-citrate synthase [Camellia sinensis] 0.936 0.761 0.925 1e-175
147775765423 hypothetical protein VITISV_017316 [Viti 0.936 0.761 0.925 1e-175
108864676368 ATP-citrate synthase, putative, expresse 0.938 0.877 0.913 1e-173
122248711423 RecName: Full=ATP-citrate synthase alpha 0.936 0.761 0.913 1e-173
326507652423 predicted protein [Hordeum vulgare subsp 0.936 0.761 0.909 1e-172
359487578435 PREDICTED: ATP-citrate synthase alpha ch 0.936 0.740 0.892 1e-172
>gi|255543008|ref|XP_002512567.1| ATP-citrate synthase, putative [Ricinus communis] gi|223548528|gb|EEF50019.1| ATP-citrate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/322 (94%), Positives = 312/322 (96%)

Query: 1   MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
           MARKKIREYDSKRLLKEHLKRLAGLD+QICSAQVTESTDF+ELTN+EPWLSSSRLVVKPD
Sbjct: 1   MARKKIREYDSKRLLKEHLKRLAGLDIQICSAQVTESTDFTELTNQEPWLSSSRLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 120
           MLFGKRGKSGLVALNLDLAQVAEFVK RLG EVEM GCK PITTFIVEPFVPH+QE+YLS
Sbjct: 61  MLFGKRGKSGLVALNLDLAQVAEFVKARLGVEVEMSGCKAPITTFIVEPFVPHDQEFYLS 120

Query: 121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 180
           IVS+RLGCTISFSECGGIEIEENWDKVKT+FLPTEK M L+ACAPLIATLPLE RGKIG 
Sbjct: 121 IVSERLGCTISFSECGGIEIEENWDKVKTVFLPTEKPMNLEACAPLIATLPLEIRGKIGA 180

Query: 181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 240
           FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFG
Sbjct: 181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 241 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           RVLS TESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVLSPTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEEEVLQYARVVID 322
           YAEYSGAPNEEEVLQYARVVID
Sbjct: 301 YAEYSGAPNEEEVLQYARVVID 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449435576|ref|XP_004135571.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] gi|449508610|ref|XP_004163361.1| PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124562|ref|XP_002330054.1| predicted protein [Populus trichocarpa] gi|222871479|gb|EEF08610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450474|ref|XP_002280514.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 1 [Vitis vinifera] gi|296089834|emb|CBI39653.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|378405606|gb|AFB82642.1| ATP-citrate synthase [Camellia sinensis] Back     alignment and taxonomy information
>gi|147775765|emb|CAN64797.1| hypothetical protein VITISV_017316 [Vitis vinifera] Back     alignment and taxonomy information
>gi|108864676|gb|ABA95549.2| ATP-citrate synthase, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|122248711|sp|Q2QZ86.2|ACLA2_ORYSJ RecName: Full=ATP-citrate synthase alpha chain protein 2; Short=ATP-citrate synthase A-2; AltName: Full=ATP-citrate lyase A-2; AltName: Full=Citrate cleavage enzyme A-2 gi|108864675|gb|ABA95548.2| ATP-citrate synthase, putative, expressed [Oryza sativa Japonica Group] gi|218186206|gb|EEC68633.1| hypothetical protein OsI_37024 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|326507652|dbj|BAK03219.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|359487578|ref|XP_003633614.1| PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2012310424 ACLA-3 "ATP-citrate lyase A-3" 0.936 0.759 0.903 1.3e-155
TAIR|locus:2025865423 ACLA-2 "ATP-citrate lyase A-2" 0.936 0.761 0.807 5.3e-143
DICTYBASE|DDB_G0278341450 DDB_G0278341 "putative ATP cit 0.936 0.715 0.518 9.1e-84
ZFIN|ZDB-GENE-031113-1 1092 aclya "ATP citrate lyase a" [D 0.938 0.295 0.411 5.2e-65
UNIPROTKB|F1NPU6 1100 ACLY "Uncharacterized protein" 0.938 0.293 0.411 7e-65
UNIPROTKB|F1S0N2 524 ACLY "Uncharacterized protein" 0.938 0.616 0.411 1.4e-64
MGI|MGI:103251 1091 Acly "ATP citrate lyase" [Mus 0.938 0.296 0.423 1.4e-64
UNIPROTKB|F1P269 1094 ACLY "Uncharacterized protein" 0.938 0.295 0.414 1.9e-64
UNIPROTKB|J9NST7 1091 ACLY "Uncharacterized protein" 0.938 0.296 0.414 3.9e-64
UNIPROTKB|G3V9G4 1091 Acly "ATP citrate lyase, isofo 0.938 0.296 0.414 3.9e-64
TAIR|locus:2012310 ACLA-3 "ATP-citrate lyase A-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1517 (539.1 bits), Expect = 1.3e-155, P = 1.3e-155
 Identities = 291/322 (90%), Positives = 306/322 (95%)

Query:     1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
             MARKKIREYDSKRLLKEHLKRLA +DLQI SAQVTESTDF+ELTN+E WLSS++LVVKPD
Sbjct:     1 MARKKIREYDSKRLLKEHLKRLANIDLQIRSAQVTESTDFTELTNQESWLSSTKLVVKPD 60

Query:    61 MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 120
             MLFGKRGKSGLVAL LDLA+VA+FVK RLGTEVEM GCK PITTFIVEPFVPH+QEYYLS
Sbjct:    61 MLFGKRGKSGLVALKLDLAEVADFVKARLGTEVEMEGCKAPITTFIVEPFVPHDQEYYLS 120

Query:   121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 180
             IVSDRLGCTISFSECGGIEIEENWDKVKTIFLP EK MTL+ CAPLIATLPLE R KIG+
Sbjct:   121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPAEKSMTLEVCAPLIATLPLEVRAKIGN 180

Query:   181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 240
             FIMG FAVFQDLDFSF+EMNPFTLV+GEP+PLDMRGELDDTAAFKNF KW +IEFPLPFG
Sbjct:   181 FIMGAFAVFQDLDFSFMEMNPFTLVDGEPFPLDMRGELDDTAAFKNFNKWGDIEFPLPFG 240

Query:   241 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
             RVLSSTE+FIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct:   241 RVLSSTENFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query:   301 YAEYSGAPNEEEVLQYARVVID 322
             YAEYSGAPNEEEVLQYARVVID
Sbjct:   301 YAEYSGAPNEEEVLQYARVVID 322
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016874 "ligase activity" evidence=IEA
GO:0003878 "ATP citrate synthase activity" evidence=ISS
GO:0006085 "acetyl-CoA biosynthetic process" evidence=TAS
GO:0009346 "citrate lyase complex" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
TAIR|locus:2025865 ACLA-2 "ATP-citrate lyase A-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278341 DDB_G0278341 "putative ATP citrate synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031113-1 aclya "ATP citrate lyase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPU6 ACLY "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0N2 ACLY "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:103251 Acly "ATP citrate lyase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P269 ACLY "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NST7 ACLY "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9G4 Acly "ATP citrate lyase, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QZ86ACLA2_ORYSJ2, ., 3, ., 3, ., 80.91300.93600.7612yesno
O80526ACLA3_ARATH2, ., 3, ., 3, ., 80.90370.93600.7594yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.691
4th Layer6.2.1.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02235423 PLN02235, PLN02235, ATP citrate (pro-S)-lyase 0.0
COG0045387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 1e-40
TIGR01016386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 1e-20
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 2e-17
PRK00696388 PRK00696, sucC, succinyl-CoA synthetase subunit be 4e-16
PRK14046392 PRK14046, PRK14046, malate--CoA ligase subunit bet 2e-09
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase Back     alignment and domain information 
 Score =  704 bits (1819), Expect = 0.0
 Identities = 292/322 (90%), Positives = 306/322 (95%)

Query: 1   MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
           MARKKIREYDSKRLLKEHLKRLAG+DL I SAQVTESTDF+EL NKEPWLSS++LVVKPD
Sbjct: 1   MARKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLS 120
           MLFGKRGKSGLVALNLDLAQVA FVK RLG EVEMGGCKGPITTFIVEPFVPH+QE+YLS
Sbjct: 61  MLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLS 120

Query: 121 IVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTLDACAPLIATLPLEFRGKIGD 180
           IVSDRLGC+ISFSECGGIEIEENWDKVKTIFLPTE  +T + CAPLIATLPLE RGKI +
Sbjct: 121 IVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEAPLTSEICAPLIATLPLEIRGKIEE 180

Query: 181 FIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFG 240
           FI GVFAVFQDLDF+F+EMNPFTLV+GEPYPLDMRGELDDTAAFKNFKKW NIEFPLPFG
Sbjct: 181 FIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240

Query: 241 RVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
           RV+S TESFIH LDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
Sbjct: 241 RVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300

Query: 301 YAEYSGAPNEEEVLQYARVVID 322
           YAEYSGAPNEEEVLQYARVVID
Sbjct: 301 YAEYSGAPNEEEVLQYARVVID 322

Length = 423
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN02235423 ATP citrate (pro-S)-lyase 100.0
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
PRK14046392 malate--CoA ligase subunit beta; Provisional 100.0
KOG1447412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
KOG2799434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 100.0
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 100.0
KOG1254 600 consensus ATP-citrate lyase [Energy production and 99.85
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.23
PF00549153 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e 99.11
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 98.94
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 98.68
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 98.62
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 98.61
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 98.59
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 98.59
PLN02257434 phosphoribosylamine--glycine ligase 98.51
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 98.51
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 98.48
PRK07178472 pyruvate carboxylase subunit A; Validated 98.48
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 98.48
PLN02735 1102 carbamoyl-phosphate synthase 98.47
PRK08462445 biotin carboxylase; Validated 98.46
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 98.45
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 98.44
PRK08654499 pyruvate carboxylase subunit A; Validated 98.44
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 98.43
PRK14569296 D-alanyl-alanine synthetase A; Provisional 98.41
PRK05586447 biotin carboxylase; Validated 98.41
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 98.4
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 98.39
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 98.37
PLN02948 577 phosphoribosylaminoimidazole carboxylase 98.36
PRK06524493 biotin carboxylase-like protein; Validated 98.34
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 98.33
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 98.23
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 98.22
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 98.18
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 98.18
PLN027351102 carbamoyl-phosphate synthase 98.18
PRK12999 1146 pyruvate carboxylase; Reviewed 98.18
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.18
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 98.15
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 98.14
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 98.12
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 98.11
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 98.09
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 98.09
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 98.08
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 97.97
PRK14016 727 cyanophycin synthetase; Provisional 97.95
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 97.95
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 97.95
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 97.92
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 97.91
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 97.9
PRK07206416 hypothetical protein; Provisional 97.89
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 97.88
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 97.87
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 97.87
PRK14572347 D-alanyl-alanine synthetase A; Provisional 97.86
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 97.85
PRK10446300 ribosomal protein S6 modification protein; Provisi 97.85
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 97.84
PRK02186 887 argininosuccinate lyase; Provisional 97.81
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 97.79
TIGR02717447 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP 97.79
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 97.76
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 97.74
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 97.7
PRK14570364 D-alanyl-alanine synthetase A; Provisional 97.7
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 97.62
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 97.54
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 97.53
PRK14571299 D-alanyl-alanine synthetase A; Provisional 97.5
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 97.46
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 97.45
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 97.27
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 97.17
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 97.07
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 96.87
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 96.55
PRK06849389 hypothetical protein; Provisional 96.18
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 95.4
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 95.15
PLN02941328 inositol-tetrakisphosphate 1-kinase 94.83
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 94.75
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 93.82
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 93.07
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 93.06
PRK12458338 glutathione synthetase; Provisional 90.97
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 90.69
COG3919415 Predicted ATP-grasp enzyme [General function predi 90.68
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 84.93
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-92  Score=694.63  Aligned_cols=334  Identities=83%  Similarity=1.273  Sum_probs=310.0

Q ss_pred             CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEe-ecCCHHhHHhhccc---cCCCcEEEEeccccCcccCcCeEEEeC
Q 019240            1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVT-ESTDFSELTNKEPW---LSSSRLVVKPDMLFGKRGKSGLVALNL   76 (344)
Q Consensus         1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~-~~~~~~ea~~aa~~---lg~~pvVvKaqv~~g~Rgk~GgV~l~~   76 (344)
                      ||+++|||||||+||++||++++|||+|  .+.++ +++  +|+.+++++   |++.++|||||+++|||||+|||+++.
T Consensus         1 ~~~~~l~EyqaK~ll~~~~~~~~gipvP--~~~v~~~~~--ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~   76 (423)
T PLN02235          1 MARKKIREYDSKRLLKEHLKRLAGIDLP--IRSAQVTES--TDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL   76 (423)
T ss_pred             CCcccccHHHHHHHHHHhhcccCCCCCC--CCeeccCCH--HHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence            9999999999999999999999999999  88777 554  477666655   876578999999999999999999999


Q ss_pred             CHHHHHHHHHHHhcccchhcCCCcceeeEEEEeecCCCceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcC
Q 019240           77 DLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEK  156 (344)
Q Consensus        77 s~eea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~  156 (344)
                      |++|+++++++|++++++|+++.|++++|||||++++.+|||+|++.||..+.+++|.+||||||+.|+++.++++||..
T Consensus        77 s~~Ea~~~a~~~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~S~~GGvdIEe~pe~i~k~~Id~~~  156 (423)
T PLN02235         77 DLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSISFSECGGIEIEENWDKVKTIFLPTEA  156 (423)
T ss_pred             CHHHHHHHHHHHhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEEEECCCCCcccCChhHeEEEEcCCCC
Confidence            99999999999999999877777799999999999999999999999999878999999999999999999999999999


Q ss_pred             CCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCceEEEeeeeeeccchhhhcccccccccCC
Q 019240          157 HMTLDACAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP  236 (344)
Q Consensus       157 ~l~~~~a~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v~~g~~~alDaki~iDd~A~fR~~~~~~~~~~~  236 (344)
                      +++++++++++.+++....+++.+++.+||++|.++|++++|||||++.||+++|+|||+.+||||.|||++.|..++||
T Consensus       157 gl~~~~~~~~~~~l~~~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~  236 (423)
T PLN02235        157 PLTSEICAPLIATLPLEIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPYPLDMRGELDDTAAFKNFKKWGNIEFP  236 (423)
T ss_pred             CCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCeEEEecceEeeCCCEEEEEeEEcccCCCcccCHhHhhhhccc
Confidence            99999999999999888889999999999999999999999999999988899999999999999999999879899999


Q ss_pred             CCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCCCcceeeecCCCCCHHHHHHH
Q 019240          237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY  316 (344)
Q Consensus       237 ~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg~pANFlD~GG~a~~~~v~~a  316 (344)
                      .||+|+.+|+|.++.++|+++...+++++|+||||||||||||||+|+|||+|+++|.+|+||||||+||+||.++|+++
T Consensus       237 ~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a  316 (423)
T PLN02235        237 LPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQY  316 (423)
T ss_pred             ccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHH
Confidence            99999999999988888877766665555999999999999999999999999994433999999999999999999999


Q ss_pred             HHHHh----cccCccEE-EEeecceee
Q 019240          317 ARVVI----DVRDFTNF-GLFFGTQAL  338 (344)
Q Consensus       317 ~~~il----~d~~v~~~-~~~~~~~~~  338 (344)
                      +++||    +||+|+++ ||||||++-
T Consensus       317 ~~iil~~~~~~~~vk~ilvnIfGGI~r  343 (423)
T PLN02235        317 ARVVIDCATANPDGRKRALLIGGGIAN  343 (423)
T ss_pred             HHHHHhhhhcCCCCcEEEEEEeccccc
Confidence            99999    89999975 999999873

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3mwe_A425 Truncated Human Atp-Citrate Lyase With Tartrate Bou 1e-68
3pff_A 829 Truncated Human Atp-Citrate Lyase With Adp And Tart 1e-68
3mwd_A425 Truncated Human Atp-Citrate Lyase With Citrate Boun 3e-67
1cqi_B385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 1e-07
1scu_B388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 1e-07
1jll_B388 Crystal Structure Analysis Of The E197betaa Mutant 5e-07
3ufx_B397 Thermus Aquaticus Succinyl-coa Synthetase In Comple 3e-05
1eud_B396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 6e-04
1euc_B396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 8e-04
2fp4_B395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 8e-04
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 198/326 (60%), Gaps = 3/326 (0%)
Query: 1   MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
           M+ K I E   K LL + +   + +  +   A+VT  TD++ L    PWL S  LVVKPD
Sbjct: 1   MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61  MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 118
            L  +RGK GLV +NL L  V  ++K RLG E  +G   G +  F++EPFVPH+Q  E+Y
Sbjct: 61  QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 177
           + I + R G  + F   GG+++ +   K + + +  ++ +   D    L+   P + +  
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 237
           +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP 
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
           PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEEEVLQYARVVIDV 323
           L NY EYSGAP+E++   YA+ ++ +
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSL 326
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 Back     alignment and structure
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397 Back     alignment and structure
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 1e-166
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-131
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 3e-15
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 3e-14
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
 Score =  482 bits (1241), Expect = e-166
 Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 3/325 (0%)

Query: 1   MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPD 60
           M+ K I E   K LL + +   + +  +   A+VT  TD++ L    PWL S  LVVKPD
Sbjct: 1   MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60

Query: 61  MLFGKRGKSGLVALNLDLAQVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPHNQ--EYY 118
            L  +RGK GLV +NL L  V  ++K RLG E  +G   G +  F++EPFVPH+Q  E+Y
Sbjct: 61  QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120

Query: 119 LSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKHMTL-DACAPLIATLPLEFRGK 177
           + I + R G  + F   GG+++ +   K + + +  ++ +   D    L+   P + +  
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180

Query: 178 IGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPL 237
           +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP 
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240

Query: 238 PFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
           PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300

Query: 298 LGNYAEYSGAPNEEEVLQYARVVID 322
           L NY EYSGAP+E++   YA+ ++ 
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILS 325
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
1wr2_A238 Hypothetical protein PH1789; structural genomics, 100.0
2csu_A457 457AA long hypothetical protein; structural genomi 99.22
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 98.86
3ouz_A446 Biotin carboxylase; structural genomics, center fo 98.79
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 98.76
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.74
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 98.72
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 98.72
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 98.7
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 98.69
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 98.68
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 98.67
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 98.67
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 98.66
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 98.66
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 98.6
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 98.6
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 98.59
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 98.58
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.56
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 98.54
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 98.5
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 98.5
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 98.5
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 98.5
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 98.5
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 98.47
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 98.42
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 98.4
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 98.4
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 98.38
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 98.37
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 98.37
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 98.37
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 98.37
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 98.36
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 98.36
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 98.35
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 98.34
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 98.34
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 98.34
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 98.33
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.28
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 98.27
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 98.25
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 98.23
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 98.23
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 98.18
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 98.1
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 98.06
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 98.05
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.03
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 98.03
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 98.0
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 97.96
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 97.95
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 97.95
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 97.79
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 97.61
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 97.15
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 96.58
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 96.26
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 96.24
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 95.67
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 95.36
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 95.07
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 94.59
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 94.16
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 91.99
3dmy_A 480 Protein FDRA; predicted actyl-COA synthetase, nysg 87.18
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
Probab=100.00  E-value=9.6e-88  Score=668.83  Aligned_cols=334  Identities=38%  Similarity=0.688  Sum_probs=300.2

Q ss_pred             CCCCCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecC-CHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHH
Q 019240            1 MARKKIREYDSKRLLKEHLKRLAGLDLQICSAQVTEST-DFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLA   79 (344)
Q Consensus         1 ~~~~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~-~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~e   79 (344)
                      ||++.++|||+|+||++|+++++.. +..+++.+++++ +++||.+++++||++|||||+|+++|||||+|||+++.|++
T Consensus         1 m~~k~i~Ey~~K~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~e   79 (425)
T 3mwd_A            1 MSAKAISEQTGKELLYKFICTTSAI-QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLD   79 (425)
T ss_dssp             -CEEEECHHHHHHHHHHHCCCSSCB-CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHH
T ss_pred             CCchhHhHHHHHHHHHHhccccCCc-cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHH
Confidence            9999999999999999994443221 222246555554 68899999999986899999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhcCCCcceeeEEEEeecCC--CceEEEEEEEcCCCceEEeeccCcccccccccceeEEEcCCcCC
Q 019240           80 QVAEFVKGRLGTEVEMGGCKGPITTFIVEPFVPH--NQEYYLSIVSDRLGCTISFSECGGIEIEENWDKVKTIFLPTEKH  157 (344)
Q Consensus        80 ea~~~a~~~l~~~~~~~g~~~~v~~vLVee~~~~--~~Elylgi~~Dr~~p~il~s~~GGv~iE~~~d~~~~~~l~~~~~  157 (344)
                      |+++++++|+++.+.++.|.+++++||||+|+++  ++|||+|+++||.+|+|++|++|||+||+++|+..++|+++..+
T Consensus        80 ev~~aa~~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s~~GGv~IE~vad~~~~~~i~~~~~  159 (425)
T 3mwd_A           80 GVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEK  159 (425)
T ss_dssp             HHHHHHTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEESSCSTTCCSHHHHSEEEEEETTCC
T ss_pred             HHHHHHHHHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEECCCCccHhHhhcccceEecCCccc
Confidence            9999999999998754456668999999999986  48999999999999999999999999999999877788888888


Q ss_pred             CCHHHH-HHHHcCCChHHHHHHHHHHHHHHHHhhccCcceeeeeeeeecCCceEEEeeeeeeccchhhhcccccccccCC
Q 019240          158 MTLDAC-APLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFP  236 (344)
Q Consensus       158 l~~~~a-~~ll~g~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v~~g~~~alDaki~iDd~A~fR~~~~~~~~~~~  236 (344)
                      ++..++ ++++.++++.++++++++|.+||++|.++|++++|||||++.+++++|+|||+++||||.|||++.|..++++
T Consensus       160 l~~~~~~~~ll~g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~gv~AlDAki~lDDnA~fR~~~~~~~~~~~  239 (425)
T 3mwd_A          160 LNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFP  239 (425)
T ss_dssp             CCHHHHHHTTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTEEEECCEEEEEEGGGHHHHHHHHCSCCCC
T ss_pred             cCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCceEEEeceeecccchhhhChhhhhhhhcc
Confidence            888887 6788888889999999999999999999999999999999933349999999999999999999889888998


Q ss_pred             CCCCCCCCccccccCccchhhhccCCcEEEccCCcEEEEeeCChhhHHHHHHHhhhccCC--CcceeeecCCCCCHHHHH
Q 019240          237 LPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYAS--ELGNYAEYSGAPNEEEVL  314 (344)
Q Consensus       237 ~~~~~~~~~~e~~~~~~de~~a~~~~l~yv~l~G~Ig~~vnGaGlamat~D~i~~~g~gg--~pANFlD~GG~a~~~~v~  314 (344)
                      .+|+++.+|+|.++.++|++++++++||||+||||||||||||||+|+|||+|++  +||  +||||||+||+||.++|+
T Consensus       240 ~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~--~Gg~~~pANflD~gG~a~~e~v~  317 (425)
T 3mwd_A          240 PPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICD--LGGVNELANYGEYSGAPSEQQTY  317 (425)
T ss_dssp             CCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHH--TTCGGGBCEEEEEESCCCHHHHH
T ss_pred             ccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHH--cCCCcCCcceEEecCCCCHHHHH
Confidence            8899999999998888888888899999999999999999999999999999999  789  799999999999999999


Q ss_pred             HH----HHHHhcccCccE-EEEeeccee
Q 019240          315 QY----ARVVIDVRDFTN-FGLFFGTQA  337 (344)
Q Consensus       315 ~a----~~~il~d~~v~~-~~~~~~~~~  337 (344)
                      ++    |++|++||+|++ |||||||++
T Consensus       318 ~~~~~~l~ii~~d~~vk~i~vnIfGGI~  345 (425)
T 3mwd_A          318 DYAKTILSLMTREKHPDGKILIIGGSIA  345 (425)
T ss_dssp             HHHHHHHHHTTSSCCTTCEEEEECBCBC
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEecCCcc
Confidence            86    999999999997 699999985
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 4e-15
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 4e-14
d2nu7b1150 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta 5e-04
d2nn6i1125 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {H 0.003
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 71.5 bits (174), Expect = 4e-15
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 21/233 (9%)

Query: 5   KIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFG 64
            + EY +K+L   +        L         +    E       + +   VVK  +  G
Sbjct: 2   NLHEYQAKQLFARY-------GLPAPVGYACTTPR--EAEEAASKIGAGPWVVKCQVHAG 52

Query: 65  KRGKSGLVALNLDLAQVAEFVKGRLGTEV---EMGGCKGPITTFIVEPFVPHNQEYYLSI 121
            RGK+G V +      +  F +  LG  +   +      P+   +VE      +E YL  
Sbjct: 53  GRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112

Query: 122 VSDRLGCTISF--SECGGIEIEE----NWDKVKTIFLPTEKHMTLDACAPLIATLPLEFR 175
           V DR    + F  S  GG+EIE+        +  + L             L   L LE +
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172

Query: 176 --GKIGDFIMGVFAVFQDLDFSFIEMNPFTLV-NGEPYPLDMRGELDDTAAFK 225
              +     MG+  +F + D + IE+NP  +   G+   LD +   D  A F+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150 Back     information, alignment and structure
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d2nu7b1150 Succinyl-CoA synthetase, beta-chain, C-terminal do 100.0
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.04
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 98.98
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 98.97
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 98.96
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 98.79
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 98.7
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 98.64
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 98.62
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.52
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.47
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 98.45
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 98.2
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 98.02
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 97.94
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 97.85
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 97.8
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 96.23
d2csua2161 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 81.7
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-50  Score=370.84  Aligned_cols=222  Identities=23%  Similarity=0.324  Sum_probs=196.8

Q ss_pred             CCCCHHHHHHHHHHhhhcCCCcccCCCceEEeecCCHHhHHhhccccCCCcEEEEeccccCcccCcCeEEEeCCHHHHHH
Q 019240            4 KKIREYDSKRLLKEHLKRLAGLDLQICSAQVTESTDFSELTNKEPWLSSSRLVVKPDMLFGKRGKSGLVALNLDLAQVAE   83 (344)
Q Consensus         4 ~~L~Eyqak~lL~~~~~~~~GI~vp~~~~~~~~~~~~~ea~~aa~~lg~~pvVvKaqv~~g~Rgk~GgV~l~~s~eea~~   83 (344)
                      |+|+|||||+||++|     |||||  ++.+++++  +||.+++++||++|||+|+|++++||||+|||+++.+++|+..
T Consensus         1 m~L~E~eaK~lL~~y-----GIpvp--~~~~a~s~--~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~   71 (238)
T d2nu7b2           1 MNLHEYQAKQLFARY-----GLPAP--VGYACTTP--REAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRA   71 (238)
T ss_dssp             CBCCHHHHHHHHHHT-----TCCCC--CEEEESSH--HHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHH
T ss_pred             CchhHHHHHHHHHHc-----CCCCC--CceEECCH--HHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHH
Confidence            799999999999999     99998  99998875  6999999999855999999999999999999999999999999


Q ss_pred             HHHHHhcccchh--cCCCc-ceeeEEEEeecCCCceEEEEEEEcCC-Cce-EEeeccCcccccccc----cceeEEEcCC
Q 019240           84 FVKGRLGTEVEM--GGCKG-PITTFIVEPFVPHNQEYYLSIVSDRL-GCT-ISFSECGGIEIEENW----DKVKTIFLPT  154 (344)
Q Consensus        84 ~a~~~l~~~~~~--~g~~~-~v~~vLVee~~~~~~Elylgi~~Dr~-~p~-il~s~~GGv~iE~~~----d~~~~~~l~~  154 (344)
                      ++++++++.+.+  +.+.+ .+++++||+|+++++|+|+|+++||. +|+ ++.|+.||+++|++.    ..+...++++
T Consensus        72 ~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~  151 (238)
T d2nu7b2          72 FAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDP  151 (238)
T ss_dssp             HHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECCT
T ss_pred             HHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccCc
Confidence            999999988765  33334 68999999999999999999999999 665 455678999999864    4455568899


Q ss_pred             cCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHHHHhhccCcceeeeeeeee-cCCceEEEeeeeeeccchhhhcccccc
Q 019240          155 EKHMTLDACAPLIAT--LPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTL-VNGEPYPLDMRGELDDTAAFKNFKKWA  231 (344)
Q Consensus       155 ~~~l~~~~a~~ll~g--~~~~~~~~l~~~l~~L~~lf~e~d~~~lEINPL~v-~~g~~~alDaki~iDd~A~fR~~~~~~  231 (344)
                      ..+++...+.+++.+  .+..+..++++++.++|++|.+.+++++|||||++ ++|+++|+|||+++||||.||||+ |.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~-~~  230 (238)
T d2nu7b2         152 LTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD-LR  230 (238)
T ss_dssp             TTCCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHH-HH
T ss_pred             ccccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChh-HH
Confidence            999999999888874  45688999999999999999999999999999999 888899999999999999999998 55


Q ss_pred             cccC
Q 019240          232 NIEF  235 (344)
Q Consensus       232 ~~~~  235 (344)
                      .+++
T Consensus       231 ~~~d  234 (238)
T d2nu7b2         231 EMRD  234 (238)
T ss_dssp             HTCC
T ss_pred             hhcC
Confidence            5543
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure