Citrus Sinensis ID: 019326

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
Protein Sequence
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS
Secondary Structure (PSIPRED)
cEEEEEEcccEEEEEEEEccccccccccEEEEEEcEEcccccccEEEEEEcccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEccccccccccEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEcccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEEEEcccccccccccEEEEEEccccEEEEEccccccccccccEEEEcccEEEEEEEcccccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccEEEEEEEcccccccccEEEcccEEEEEEccccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccccccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEcccccEEEEEccccEEEEEEcccccEEEEcccccccccccccccEcccccccccEEEEccccccEcHcccccc
Coil and Loop (DISEMBL)
MSLIAGSYEKFIwgyklkpsnhyssdqktltltqlfsypahlspittvavsgtaaasggtddtihlydlstssslgaihhhesssvtslafytpqnlsvprnlfstsadgfvsifdadpfVLLTSVKVHKkgvndlavhhsgklaltvgrdDCLAMVNLVRGRRSFYHKIGkeaslikfdgsgekfFMVTEEKVGIHQAEDAKLLCEldgkkrilcaapgengvlftggedrsitawdtnsgkVAYCIEDAHSARVKGIVVLTkndggstaenpylvasassdgvICVWDVRMaikekplplaeaktnsrltclagsstksfkrpqigdsapkgeekasmeds
Flexible Loop (DISEMBL)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVndlavhhsgklaltvgrdDCLAMVNLVRGRRSfyhkigkeaslikfdgsgEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKplplaeaktnsrltclagsstksfkrpqigdsapkgeekasmeds
Low Complexity Region (SEG)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIttvavsgtaaasggtddtIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS
Disordered region (IsUnstruct)
***IAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH****SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL*******************************************
Disordered Region (DISOPRED)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK********************
Disordered Region (DISEMBL)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAI*********SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGD**************
Disordered Region (DISPRO)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	343	2.2.26 [Sep-21-2011]
Q9NWT1	392	p21-activated protein kin	yes	no	0.865	0.757	0.348	3e-45
Q6TNS2	368	p21-activated protein kin	yes	no	0.886	0.826	0.313	3e-42
Q9DCE5	382	p21-activated protein kin	yes	no	0.871	0.782	0.324	9e-39
Q68FJ6	363	p21-activated protein kin	N/A	no	0.860	0.812	0.318	1e-38
Q5ZKU8	369	p21-activated protein kin	yes	no	0.854	0.794	0.325	2e-38
Q5EA99	392	p21-activated protein kin	yes	no	0.865	0.757	0.310	4e-38
O74453	341	Shk1 kinase-binding prote	yes	no	0.871	0.876	0.257	1e-14
P20484	468	Protein MAK11 OS=Saccharo	yes	no	0.865	0.634	0.263	3e-14
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.685	0.358	0.232	2e-07
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.615	0.320	0.215	4e-07

>sp|Q9NWT1|PK1IP_HUMAN p21-activated protein kinase-interacting protein 1 OS=Homo sapiens GN=PAK1IP1 PE=1 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 19/316 (6%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           M L+AG YE+ ++G+ + P      D +  TL   F++ AH + ++ VAV+     +G  
Sbjct: 1   MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK 60

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D+TIH+YD+      GA+ HH S ++T L FY        R+L S + DG + I+DA  +
Sbjct: 61  DETIHIYDMKKKIEHGALVHH-SGTITCLKFYGN------RHLISGAEDGLICIWDAKKW 113

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct: 114 ECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWS 173

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             GE++ ++ + K+ I+Q + A +   +  +KRI         VL   G++  I  +D +
Sbjct: 174 PRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCD 233

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP--YLVASASSDGVICVWDVRMAIKEK 298
           S  V  C   AH  RVK +          + E P  +++ SASSDG I +W ++   K  
Sbjct: 234 S-LVCLCEFKAHENRVKDMF---------SFEIPEHHVIVSASSDGFIKMWKLKQDKKVP 283

Query: 299 PLPLAEAKTNSRLTCL 314
           P  L E  TN+RLTCL
Sbjct: 284 PSLLCEINTNARLTCL 299

Negatively regulates the PAK1 kinase. PAK1 is a member of the PAK kinase family, which have been shown to play a positive role in the regulation of signaling pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.
Homo sapiens (taxid: 9606)

>sp|Q6TNS2|PK1IP_DANRE p21-activated protein kinase-interacting protein 1-like OS=Danio rerio GN=pak1ip1 PE=2 SV=1

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 25/329 (7%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           + L+AG YE+ ++GY++ P++      +  T+   F++ AH + +  V+ S    A+G  
Sbjct: 12  IELVAGCYEQIVFGYRVCPAD------EEWTIEPTFTHHAHTASLNAVSSSNQFIATGSK 65

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D+TI LYD+   +  GA+ HH+ + ++ L FY   +L       S   DG + ++    +
Sbjct: 66  DETIQLYDMCKKTEHGALLHHDGT-ISCLEFYGTSHL------LSGGQDGLICVWSTKKW 118

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             L +++ HK  V  L+VH SGKLAL+VG D  L   NL+ GR +F   I + A ++ + 
Sbjct: 119 ECLKTIRAHKGQVTSLSVHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKQNAEIVLWS 178

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             G+K+ +V  +KV I+  + A ++  +   KRI C    +N +L  GG+D S+  +D  
Sbjct: 179 PDGDKYAVVVNDKVDIYTLDSATIIGTIAFTKRISCLKFLKNSLLAVGGDDESVRIYDVT 238

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
           S K   C   AH  RVK I    K+D         ++ +AS+DG I +W + +   E P 
Sbjct: 239 SQKCV-CEFKAHENRVKAIESFMKDDF-------CVLVTASNDGFIKLWKLNLESIESPT 290

Query: 301 PLAEAKTNSRLTCLA----GSSTKSFKRP 325
            L +  T +RLTCL     G + ++ ++P
Sbjct: 291 LLGQLNTTARLTCLCVWMPGETKETAEQP 319

Negatively regulates the PAK1 kinase.

Danio rerio (taxid: 7955)

>sp|Q9DCE5|PK1IP_MOUSE p21-activated protein kinase-interacting protein 1 OS=Mus musculus GN=Pak1ip1 PE=2 SV=2

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 166/314 (52%), Gaps = 15/314 (4%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           M L+AGSYE+ ++G+ ++     S  Q+T T    F++ +H + ++ +A +     SG  
Sbjct: 1   MELVAGSYEQVLFGFTVQRGPAKSGHQETWTPVADFTHHSHTASLSVLASNSRYVVSGSK 60

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D+TIH+YD+      GA+ HH + +VT L F+  Q+L       S + DG + I+D   +
Sbjct: 61  DETIHIYDMKRKVEHGALVHH-AGTVTCLKFHGNQHL------ISGAEDGHICIWDVKRW 113

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             L + K H+  V  L++H SGKLAL+VG D  L   NL+ GR +F   I + A ++++ 
Sbjct: 114 KCLKTFKAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKENAHIVEWS 173

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
            SG K+ +V + KV +++   A +   +   KRI       + VL   G++  +  +D +
Sbjct: 174 PSGGKYIVVVQNKVDVYRLGTASVSGTITNGKRISSVTFLSDSVLAVAGDEEVVRIFDCD 233

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
           S +   C   AH  RVK +V     D        +++ +AS+DG I +W +    K  P 
Sbjct: 234 SLE-CLCEFRAHENRVKDMVSFEVPDH-------HVLVTASNDGFIKMWTLPQDKKVPPS 285

Query: 301 PLAEAKTNSRLTCL 314
            L EAKT +RLTCL
Sbjct: 286 LLCEAKTGARLTCL 299

Negatively regulates the PAK1 kinase. PAK1 is a member of the PAK kinase family, which have been shown to play a positive role in the regulation of signaling pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.

Mus musculus (taxid: 10090)

>sp|Q68FJ6|PK1IP_XENLA p21-activated protein kinase-interacting protein 1-like OS=Xenopus laevis GN=pak1ip1 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 168/317 (52%), Gaps = 22/317 (6%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           + L+ G YE+ ++GY++    H   +Q   +    F++ AH + ++ +AV+    A+G  
Sbjct: 5   IKLLVGCYEQVLFGYRV----HREGEQWLSSAD--FTHHAHTASVSVLAVNNRFVATGSR 58

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D+TI +YD+      GA+ HH + ++T L FY   +L       S + DG + +++   +
Sbjct: 59  DETIQIYDMKKKVEHGALLHH-NGTITCLEFYGNTHL------LSGAEDGLICVWNTKKW 111

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               + K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I K A ++ + 
Sbjct: 112 ECQQTFKAHKGQVLSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKKNAHIVHWS 171

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
            SGEK+ +V  + V ++Q E A ++  ++  KRI  A    + ++   G++  I  +DT 
Sbjct: 172 PSGEKYVVVIHDTVDVYQLETAAVVGTINNPKRISSAQFITDALIAVAGDEEVIRLYDTA 231

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA-IKEKP 299
           S K   C   AH  RVK + V+         +  ++V S+SSDG I +W + M  ++  P
Sbjct: 232 SQKCV-CEFKAHENRVKNLHVI-------ELQGTHVVVSSSSDGYIKMWRIDMEKVQTSP 283

Query: 300 LPLAEAKTNSRLTCLAG 316
             L E  T++RLTCL+ 
Sbjct: 284 SLLCEVSTSARLTCLSA 300

Negatively regulates the PAK1 kinase.

Xenopus laevis (taxid: 8355)

>sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting protein 1-like OS=Gallus gallus GN=PAK1IP1 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 23/316 (7%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           M L+AG YE+ ++G+  +P   +       T+T  F++ AH + ++ VAV+     +G  
Sbjct: 1   MELVAGCYEQILFGFAARPGEPW-------TVTPDFTHHAHTASLSAVAVNSKYVVTGSR 53

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D++I +YD+      GA+  H + ++T L FY   +L       S + DG + I++   +
Sbjct: 54  DESIQIYDMRKKVEHGALLQH-NGTITCLEFYGTAHL------LSGAEDGLICIWNTKRW 106

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   + + A +IK+ 
Sbjct: 107 ECLKSIKAHKGHVTSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNLKQNAHIIKWS 166

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             GEK+  V   KV I++ + A +   +  +KRI       + VL   G+D  I  +  +
Sbjct: 167 PDGEKYVTVITNKVDIYKLDTASITGTITIEKRISSIRFITDSVLAIAGDDEIIRFYSCD 226

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-AIKEKP 299
           S K   C   A   R+K I    +       E  +++ +ASSDG I VW++ +  I   P
Sbjct: 227 SQK-CLCEFKARENRIKDIYSFER-------EGQHVIVTASSDGYIKVWNLDLNKINNVP 278

Query: 300 LPLAEAKTNSRLTCLA 315
             L E  T +RLTCLA
Sbjct: 279 SLLCEVSTKARLTCLA 294

Negatively regulates the PAK1 kinase.

Gallus gallus (taxid: 9031)

>sp|Q5EA99|PK1IP_BOVIN p21-activated protein kinase-interacting protein 1 OS=Bos taurus GN=PAK1IP1 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 166/316 (52%), Gaps = 19/316 (6%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           M ++AG YE+ ++G+ + P       ++       F++ AH + ++ VAV+     +G  
Sbjct: 1   MEVVAGCYEQVLFGFAVHPEPVGDGHRERWAPVADFTHHAHTASLSAVAVNSRFVVTGSK 60

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D+TIH+YD+      GA+ HH + ++T L F+        R+L S + DG + ++DA  +
Sbjct: 61  DETIHIYDMKKKVDHGALMHH-NGTITCLKFHGN------RHLISGAEDGLICVWDARRW 113

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             L S++ HK  V  L++H SG+LAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct: 114 ECLKSIRAHKGHVTFLSIHPSGRLALSVGTDKTLRTWNLVEGRSAFIKNIKQSAHIVEWS 173

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             GEK+ +V   ++ ++Q + A +   +  ++R+         VL   G++  +  +D +
Sbjct: 174 PKGEKYVVVILNRIDVYQLDTASVSGTITNERRVSSVTFLSESVLTVAGDEEVVRFFDCD 233

Query: 241 SGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK 298
           S     C+ +  AH  RVK +          T E+  LV +ASSDG I +W ++   K  
Sbjct: 234 S---LTCLSEFKAHENRVKDMFSF------ETPEHHVLV-TASSDGFIKMWKLKQDKKVS 283

Query: 299 PLPLAEAKTNSRLTCL 314
           P  L E  TN+RLTCL
Sbjct: 284 PSLLCEINTNARLTCL 299

Negatively regulates the PAK1 kinase. The PAK kinase family have been shown to play a positive role in the regulation of signaling by pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.

Bos taurus (taxid: 9913)

>sp|O74453|SKB15_SCHPO Shk1 kinase-binding protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=skb15 PE=4 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 43/342 (12%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           +  + G+Y   I+G          +D +      L+ + AH   +T +AV G   AS  +
Sbjct: 2   LRFVVGTYTHLIYGV--------DADIERKKCKPLWLFEAHEGALTALAVDGIYLASTSS 53

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN-LFSTSADGFVSIFDADP 119
           D+TI ++D + +  +  +     S  T +A    +++   +N L +   +G +S++    
Sbjct: 54  DETIKIFDHTRNVQIADV-----SVPTDIANACIRDMCFTKNHLLACHDNGQISMWSKGS 108

Query: 120 FVLLTSVKVHK-KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIK 178
           ++L+ ++K    KG+  +AVH S KLALTVG D  L + +LVRG+      +      I 
Sbjct: 109 WLLVHTLKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDLVRGKGGKVLPLSTIPESIL 168

Query: 179 FDGSGEKFFMVTEEKVGIHQAE-DAKLLCELDGKKRI--LCAAPGENGVLFTGGEDRSIT 235
           F    E  F++   + GI   + D   L     K ++  LC    +   L  G ++ ++ 
Sbjct: 169 F--LNESSFVIMSRR-GIDAFKLDLTSLFSFSSKSQLNALCLYQSK---LIVGRDNGTVL 222

Query: 236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-A 294
             DT+ GK+ +    AH  RVK +  +          + YL+ +ASSDG +C+WD     
Sbjct: 223 VLDTSDGKILHEFT-AHKKRVKSVYPV----------DDYLI-TASSDGSVCIWDKDWNL 270

Query: 295 IKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQ-IGDSAPKGE 335
           + E  +P       +R+TC+      S   P+ + D A K +
Sbjct: 271 VIEHNIP-----EGNRITCMVAMLADSNSEPKNVEDEAAKRQ 307

Interacts with pak1/shk1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P20484|MAK11_YEAST Protein MAK11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAK11 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 56/353 (15%)

Query: 3   LIAGSYEKFIWGYKLKPSNHYSSDQ-KTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTD 61
           +I GSYE  I    L   N   +D  KT     +F + AH   I  +AVS     SG  D
Sbjct: 66  IIVGSYEHNILCLSLDIPNQKENDAAKTPHFMPIFHFQAHSLSIKCLAVSRRYLVSGSND 125

Query: 62  DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTP----QNLSVPRN------LFSTSADGF 111
           + I +YDL     LG +  H+  S+T+L F  P    ++ +V +       L S S D  
Sbjct: 126 EHIRIYDLQKRKELGTLLSHQ-GSITALQFSHPASSSEDAAVSKGSKNSKWLLSASEDHK 184

Query: 112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG 171
           + ++    +  + ++K H   VND+ +H + ++A++V  D  + + NL+  R +   K+ 
Sbjct: 185 IMVWRVKDWETVGTLKGHTARVNDVDIHPTNRIAISVSDDHSIRLWNLMTLRNAAVLKLR 244

Query: 172 K---EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVL-F 226
           K     + +++ G+   +F V   ++V I++   AK+  E+  +++ L     E  +L F
Sbjct: 245 KYNTNGTCVRWLGAKGDYFAVGLRDRVLIYETGSAKVFKEIVFQRKTLMHI--ETHILPF 302

Query: 227 TGGEDRSITAWDTN-----SGKVAYCIED--------------------AHSARVKGIVV 261
              E  S+   D N       ++   +E+                     H+ R+K    
Sbjct: 303 DNKEYLSVGISDGNVHFYPCEELFEKVEENEKQEDDDDKEDISPAFSLLGHTNRIKDFKF 362

Query: 262 LTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCL 314
            T N+ G+     YLV +  SDG I VWD  M+ KE+   +A      RL CL
Sbjct: 363 YT-NEFGT-----YLV-TIGSDGKIVVWD--MSTKEQ---VAVYDCGERLNCL 403

Essential for cell growth. Plays a role in assembly of 60S pre-ribosomal particles in the nucleolus. Also required for replication of the M1 double-stranded RNA of the L-A virus. This latter function may reflect an enhanced requirement for free 60S ribosomal particles for the translation of viral mRNAs which lack poly-A tails.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 15/250 (6%)

Query: 24  SSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHES 83
           S  + T  L ++ ++   +S +     SG   A+GG D  +HL+ ++  + + ++  H +
Sbjct: 5   SPTKTTWKLQEIVAHGCSVSSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGH-T 63

Query: 84  SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK 143
           + V S+ F   + L     + + S  G + I+D +   +L ++  HK  V+ L  H  G+
Sbjct: 64  TPVESVRFNNSEEL-----IVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGE 118

Query: 144 LALTVGRDDCLAMVNLVRGRRSFYHKIGKEA-SLIKFDGSGEKFFMVTEE-KVGIHQAED 201
              +   D  + + ++ R    F +K   +A   ++F   G+     +++  V +     
Sbjct: 119 FVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTA 178

Query: 202 AKLLCELD---GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG 258
            K++ EL    G   I+   P E  +L +G  DR++  WD    ++  C E   +  V+ 
Sbjct: 179 GKMMAELSEHKGPVNIIEFHPNEY-LLASGSADRTVRFWDLEKFQLVGCTE-GETIPVRA 236

Query: 259 IVVLTKNDGG 268
           I  L  NDGG
Sbjct: 237 I--LFSNDGG 244

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 32  LTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAF 91
           L ++ ++ +++S +     SG   A+GG D  ++L+ ++  + + ++  H +S V S+  
Sbjct: 13  LQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGH-TSPVESVRL 71

Query: 92  YTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD 151
            TP+ L     + + S  G + ++D +   +L ++  HK  +  L  H  G+   +  +D
Sbjct: 72  NTPEEL-----IVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126

Query: 152 DCLAMVNLVRGRRSFYHKIGKEA-SLIKFDGSGEKFFMVTEE-KVGIHQAEDAKLLCELD 209
             + + ++ R    F ++   +A   ++F   G+      ++  V +      K++ E  
Sbjct: 127 TNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFP 186

Query: 210 GKK---RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE 249
           G      ++   P E  +L +G  DR+I  WD    +V  CIE
Sbjct: 187 GHTGPVNVVEFHPNEY-LLASGSSDRTIRFWDLEKFQVVSCIE 228

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
255587740	342	pak inhibitor skb15, putative [Ricinus c	0.988	0.991	0.709	1e-138
15217832	345	WD40 domain-containing protein [Arabidop	0.967	0.962	0.675	1e-131
297837821	345	transducin family protein [Arabidopsis l	0.953	0.947	0.688	1e-131
23306444	345	Unknown protein [Arabidopsis thaliana]	0.967	0.962	0.672	1e-131
225440382	338	PREDICTED: p21-activated protein kinase-	0.985	1.0	0.688	1e-129
6227001	365	Contains 3 PF|00400 WD40, G-beta repeat	0.967	0.909	0.637	1e-127
224122198	332	predicted protein [Populus trichocarpa]	0.915	0.945	0.738	1e-126
449433668	340	PREDICTED: p21-activated protein kinase-	0.938	0.947	0.660	1e-123
357450557	338	p21-activated protein kinase-interacting	0.956	0.970	0.65	1e-115
356530541	319	PREDICTED: p21-activated protein kinase-	0.927	0.996	0.625	1e-114

>gi|255587740|ref|XP_002534379.1| pak inhibitor skb15, putative [Ricinus communis] gi|223525404|gb|EEF28003.1| pak inhibitor skb15, putative [Ricinus communis]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/344 (70%), Positives = 287/344 (83%), Gaps = 5/344 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MSLIAGSYEKFIWG+KLKP  H   DQ+TLTLT LFSYP+H+SPITT A SG  AASG  
Sbjct: 1   MSLIAGSYEKFIWGFKLKPLKH---DQQTLTLTPLFSYPSHISPITTAAASGPVAASGSA 57

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           DDTIH+YD+ +++SLG++H H S+S+T+L+FYTP +LS PRNL S +ADG V IFDADPF
Sbjct: 58  DDTIHVYDIPSAASLGSLHDH-SASITALSFYTPPSLSFPRNLISAAADGSVCIFDADPF 116

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
           V L +V  HKKGVNDL +H SGKLAL+VGRD+CLAM+NLVRGRRSF+ ++GKEASL+KFD
Sbjct: 117 VHLKTVSAHKKGVNDLTIHPSGKLALSVGRDECLAMLNLVRGRRSFFCRLGKEASLVKFD 176

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             G+KFFMVTE  +GIHQ+EDAKL+ EL+  KR+LCAAPGENGVLFTGGEDR++TAWDTN
Sbjct: 177 IDGDKFFMVTECTIGIHQSEDAKLVTELECSKRVLCAAPGENGVLFTGGEDRNVTAWDTN 236

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKN-DGGSTAENPYLVASASSDGVICVWDVRMAIKEKP 299
           SGK+AYCIE AHSARVKGIVVL +N  GG   ++PYL+ASASSDGVI VWDVRMA+KEKP
Sbjct: 237 SGKIAYCIEGAHSARVKGIVVLNRNDGGGGGGDDPYLLASASSDGVIRVWDVRMAVKEKP 296

Query: 300 LPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS 343
            PLAE  T SRLTCLAGSS KS KRP++G   PK E   +ME S
Sbjct: 297 NPLAETNTRSRLTCLAGSSLKSLKRPEMGKIVPKEEHDTAMEGS 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217832|ref|NP_176683.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|53828631|gb|AAU94425.1| At1g65030 [Arabidopsis thaliana] gi|332196196|gb|AEE34317.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/336 (67%), Positives = 277/336 (82%), Gaps = 4/336 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MS+IAGSYE+FIWG+KLKP+ H  ++ +TLTL+ LFSYP+H+SPITTVA SG AAASGG+
Sbjct: 1   MSIIAGSYERFIWGFKLKPTKH-DAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGS 59

Query: 61  DDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP 119
           DDTIHLYDL ++SSLG++  H+ ++S+T+L+FYTP +LS PRNL S +ADG V+IFD DP
Sbjct: 60  DDTIHLYDLPSASSLGSLLDHNHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDP 119

Query: 120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
           FVLL S + HKK VNDLA+H SGKLAL V RD+  AM+NLVRG+RSF  ++G EASL+KF
Sbjct: 120 FVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRLGHEASLVKF 179

Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCAAPGENGVLFTGGEDRSITAW 237
           D SGE+F+MV   KVG+HQ+EDAKLL EL+   +KRILCA PGE+G LFTGGEDR+ITAW
Sbjct: 180 DPSGERFYMVVSNKVGVHQSEDAKLLLELENPSRKRILCATPGESGTLFTGGEDRAITAW 239

Query: 238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE 297
           DTNSGK+AY IEDAH AR+KGIVVLT+ND   + E+PYL+ SASSDG+I VWDVRMA KE
Sbjct: 240 DTNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLIGSASSDGIIRVWDVRMAAKE 299

Query: 298 KPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK 333
              PLAE  T SRLTCLAGS+ KS +RPQIG   P+
Sbjct: 300 NTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQEPQ 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837821|ref|XP_002886792.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297332633|gb|EFH63051.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/331 (68%), Positives = 275/331 (83%), Gaps = 4/331 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MS+IAGSYE+FIWG++LKP+ H  +D +TLTL+ LFSYP+H+SPITTVA SG AAASGG+
Sbjct: 1   MSIIAGSYERFIWGFRLKPTKH-DADNQTLTLSPLFSYPSHISPITTVACSGPAAASGGS 59

Query: 61  DDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP 119
           DDTIHLYDL ++SSLG++  H+ ++S+T+L+FYTP +LS PRNL S +ADG V+IFD DP
Sbjct: 60  DDTIHLYDLPSASSLGSLLDHNHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDP 119

Query: 120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
           FVLL S + HKK VNDLA+H SGKLAL V RD+  AM+NLVRG+RSF  ++G EASL+KF
Sbjct: 120 FVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRLGLEASLVKF 179

Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCAAPGENGVLFTGGEDRSITAW 237
           D SGE+FFMV   KVG+HQ+EDAKLL EL+   +KRILCAAPGE+G LFTGGEDR+ITAW
Sbjct: 180 DPSGERFFMVVSNKVGVHQSEDAKLLLELENPSRKRILCAAPGESGTLFTGGEDRAITAW 239

Query: 238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE 297
           DTNSGK+AY IEDAH AR+KGIVVLT+ND   + E+PYL+ SASSDG I VWDVRMA KE
Sbjct: 240 DTNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLIGSASSDGGIRVWDVRMAAKE 299

Query: 298 KPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG 328
              PLAE  T SRLTCLAGS+ KS +RPQIG
Sbjct: 300 NTKPLAETNTKSRLTCLAGSALKSMRRPQIG 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23306444|gb|AAN17449.1| Unknown protein [Arabidopsis thaliana]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/336 (67%), Positives = 276/336 (82%), Gaps = 4/336 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MS+IAGSYE+FIWG+KLKP+ H  ++ +TLTL+ LFSYP+H+SPITTVA SG AAASGG+
Sbjct: 1   MSIIAGSYERFIWGFKLKPTKH-DAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGS 59

Query: 61  DDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP 119
           DDTIHLYDL ++SSLG++  H+ ++S+T+L+FYTP +LS PRNL S +ADG V+IFD DP
Sbjct: 60  DDTIHLYDLPSASSLGSLLDHNHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDP 119

Query: 120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
           FVLL S + HKK VNDLA+H SGKLAL V RD+  AM+NLVRG+RSF  ++G EASL+KF
Sbjct: 120 FVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRLGHEASLVKF 179

Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCAAPGENGVLFTGGEDRSITAW 237
           D SGE+F+MV   KVG+HQ+EDAKLL EL+   +KRILCA PGE+G LFTGGEDR+ITAW
Sbjct: 180 DPSGERFYMVVSNKVGVHQSEDAKLLLELENPSRKRILCATPGESGTLFTGGEDRAITAW 239

Query: 238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE 297
           DTNSGK+AY IEDAH AR+KGIVV T+ND   + E+PYL+ SASSDG+I VWDVRMA KE
Sbjct: 240 DTNSGKLAYSIEDAHPARIKGIVVFTRNDSDGSLEDPYLIGSASSDGIIRVWDVRMAAKE 299

Query: 298 KPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK 333
              PLAE  T SRLTCLAGS+ KS +RPQIG   P+
Sbjct: 300 NTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQEPQ 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440382|ref|XP_002267244.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Vitis vinifera] gi|297740361|emb|CBI30543.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/343 (68%), Positives = 284/343 (82%), Gaps = 5/343 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MS++AGSYEKFIWG+KLK         +TLTLT LFSYP+HLSPI +VAV+G  AASGGT
Sbjct: 1   MSIVAGSYEKFIWGFKLKSLKK----SQTLTLTPLFSYPSHLSPIKSVAVAGPVAASGGT 56

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           DD++ +YDLS+ S +G +  H S +VTSL+F++P +LS PRNL S S DG V I+DADPF
Sbjct: 57  DDSVKVYDLSSCSEIGTLTDH-SGAVTSLSFFSPSSLSFPRNLLSASDDGSVCIYDADPF 115

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
           V L ++  HKKGVNDL++H SGKLALTVGRD CLAM+NLVRGRRSFY ++GKEASL+KFD
Sbjct: 116 VHLKTIAAHKKGVNDLSIHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGKEASLVKFD 175

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
            SG+KF+MV EEKV +H+AEDAKL+ E++  KR+LCAAPG NG+LFTGGEDR+ITAWDT 
Sbjct: 176 LSGDKFYMVMEEKVCVHEAEDAKLVFEMENPKRVLCAAPGSNGLLFTGGEDRNITAWDTA 235

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
           SGKVAYCIEDAHSARVKGIVVL++ND G+  ++PY+VASASSDGVI VWD+RMA +EKP 
Sbjct: 236 SGKVAYCIEDAHSARVKGIVVLSRNDSGTADDDPYMVASASSDGVIRVWDIRMANREKPN 295

Query: 301 PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS 343
           PLAEA T SRLTCLAGSS KSFK PQ+  +APK E+ A ME S
Sbjct: 296 PLAEANTKSRLTCLAGSSLKSFKGPQVVSNAPKKEQDAVMEGS 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6227001|gb|AAF06037.1|AC009360_2 Contains 3 PF|00400 WD40, G-beta repeat domains [Arabidopsis thaliana]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/356 (63%), Positives = 277/356 (77%), Gaps = 24/356 (6%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MS+IAGSYE+FIWG+KLKP+ H  ++ +TLTL+ LFSYP+H+SPITTVA SG AAASGG+
Sbjct: 1   MSIIAGSYERFIWGFKLKPTKH-DAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGS 59

Query: 61  DDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP 119
           DDTIHLYDL ++SSLG++  H+ ++S+T+L+FYTP +LS PRNL S +ADG V+IFD DP
Sbjct: 60  DDTIHLYDLPSASSLGSLLDHNHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDP 119

Query: 120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
           FVLL S + HKK VNDLA+H SGKLAL V RD+  AM+NLVRG+RSF  ++G EASL+KF
Sbjct: 120 FVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRLGHEASLVKF 179

Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCAAPG----------------- 220
           D SGE+F+MV   KVG+HQ+EDAKLL EL+   +KRILCA PG                 
Sbjct: 180 DPSGERFYMVVSNKVGVHQSEDAKLLLELENPSRKRILCATPGEVVFLTLWNPQLRFHLG 239

Query: 221 ---ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV 277
              E+G LFTGGEDR+ITAWDTNSGK+AY IEDAH AR+KGIVVLT+ND   + E+PYL+
Sbjct: 240 TLKESGTLFTGGEDRAITAWDTNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLI 299

Query: 278 ASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK 333
            SASSDG+I VWDVRMA KE   PLAE  T SRLTCLAGS+ KS +RPQIG   P+
Sbjct: 300 GSASSDGIIRVWDVRMAAKENTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQEPQ 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122198|ref|XP_002318775.1| predicted protein [Populus trichocarpa] gi|222859448|gb|EEE96995.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/318 (73%), Positives = 270/318 (84%), Gaps = 4/318 (1%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MSLIAGSYEKFIWG+KLK   H  S Q  LTLT LFSY +HL+ IT+ A +G AAASG  
Sbjct: 1   MSLIAGSYEKFIWGFKLKTLKHEPSSQN-LTLTPLFSYQSHLAHITSAAAAGPAAASGSA 59

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           DDTIHLYDL ++SSLG++H H +SSVTS+ F+TP +LS PRNL S SADG V IFD DPF
Sbjct: 60  DDTIHLYDLPSASSLGSLHQH-TSSVTSVTFFTPPSLSFPRNLLSASADGSVCIFDTDPF 118

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
           V L +V VHKK VNDL+VH SGKLALTVGRD+CLAM+NLVRGRRSFY ++GKEASL+KFD
Sbjct: 119 VHLKTVLVHKKAVNDLSVHPSGKLALTVGRDECLAMLNLVRGRRSFYCRLGKEASLVKFD 178

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             GE+FFMVTEEKVG+H+AEDAKL+ E + +KR+L AAPGENG+LFTGGEDRSITAWD N
Sbjct: 179 LGGERFFMVTEEKVGVHEAEDAKLVTEFECQKRVLSAAPGENGLLFTGGEDRSITAWDVN 238

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
           SGKVAYCI+DAHSARVKGIVVL +ND  ST ++PYL+ASASSDGVI VWDVRM++KEKP 
Sbjct: 239 SGKVAYCIDDAHSARVKGIVVLMRND--STVDDPYLLASASSDGVIRVWDVRMSMKEKPN 296

Query: 301 PLAEAKTNSRLTCLAGSS 318
           PLAEA T SRLTCLAGSS
Sbjct: 297 PLAEANTKSRLTCLAGSS 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433668|ref|XP_004134619.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/330 (66%), Positives = 265/330 (80%), Gaps = 8/330 (2%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MSLIAGSYE FIWG+KL+PS     + ++LTLT  FSY +H+S I TVA +G  AASGG 
Sbjct: 1   MSLIAGSYENFIWGFKLRPS-----EPQSLTLTPFFSYHSHISAIKTVAAAGPVAASGGN 55

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           D TIHLYDLST+SSLG++H H S+ +TSLAFYTP NLS PRNL S +ADG V I+D DPF
Sbjct: 56  DQTIHLYDLSTTSSLGSLHDH-SAYITSLAFYTPPNLSFPRNLVSAAADGSVCIYDTDPF 114

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
           V L +V  H+K VNDL++H SGKLALTVG D+CLA++NLVRGRRSFY ++G EASL+ FD
Sbjct: 115 VHLKTVLPHRKAVNDLSIHPSGKLALTVGHDECLAIINLVRGRRSFYCRLGNEASLVDFD 174

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
             G+KFFMV +EKV +H+AEDA+LLCE + KKR+ C  P ENG+L TGG+DR +TAWD  
Sbjct: 175 VGGDKFFMVMKEKVSVHEAEDARLLCEFENKKRVSCITPCENGILLTGGDDRCLTAWDVK 234

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGS-TAENPYLVASASSDGVICVWDVRM-AIKEK 298
           SGKVAY IE+AH ARV+GIVVLTKN  G+ T ++P++VASAS+DGVI VWDVRM AIK+K
Sbjct: 235 SGKVAYTIEEAHPARVRGIVVLTKNSSGAFTDDDPHVVASASTDGVIRVWDVRMTAIKDK 294

Query: 299 PLPLAEAKTNSRLTCLAGSSTKSFKRPQIG 328
           P PLAEA T +RLTCLAGS+ KS +RPQ G
Sbjct: 295 PNPLAEANTKARLTCLAGSALKSLRRPQTG 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450557|ref|XP_003595555.1| p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|355484603|gb|AES65806.1| p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/340 (65%), Positives = 263/340 (77%), Gaps = 12/340 (3%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           +SL+AGSYE+FIWG+ L P+        T TLT +FSYP+HLS I TVAVS +  ASGG+
Sbjct: 7   ISLVAGSYERFIWGFNLNPN--------TQTLTPVFSYPSHLSLIKTVAVSNSVVASGGS 58

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           DDTIHLYDLSTSSSLG++  H SS+VT+L+FY+P NL  PRNL S  ADG ++IFDAD F
Sbjct: 59  DDTIHLYDLSTSSSLGSLTDH-SSTVTALSFYSPPNLPFPRNLVSADADGSLAIFDADGF 117

Query: 121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
           V L ++ VHKKGVNDLA+H SGK+ALTV RD C AMVNLVRGRRSF  ++ KEAS+++FD
Sbjct: 118 VHLKTLSVHKKGVNDLAIHPSGKIALTVSRDSCFAMVNLVRGRRSFCCRLDKEASIVRFD 177

Query: 181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
            SG+ FFM  +E V +HQAEDA+LL EL   KR+LCAAP +NG+L+TGGEDR+ITAWD  
Sbjct: 178 VSGDSFFMAVDEIVNVHQAEDARLLMELQCPKRVLCAAPAKNGLLYTGGEDRNITAWDLK 237

Query: 241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
           SGKVAYCIE+AH+ARVKGIVVL+  D  +  + PYLVASASSDG I  WDVRMA  EK  
Sbjct: 238 SGKVAYCIEEAHAARVKGIVVLS--DEATGDDEPYLVASASSDGTIRAWDVRMAATEKSE 295

Query: 301 PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASM 340
           PLAE KT SRLTCLAGSS KS K+PQ G    K E+K  M
Sbjct: 296 PLAECKTQSRLTCLAGSSLKS-KQPQAGKINAKVEDKNQM 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530541|ref|XP_003533839.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Glycine max]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/331 (62%), Positives = 258/331 (77%), Gaps = 13/331 (3%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
           MSL+AGSYEKFIWG+ L+         ++ TLT LFSYP+HLS I +VA+SG   ASGG 
Sbjct: 1   MSLVAGSYEKFIWGFTLR--------SQSQTLTPLFSYPSHLSSIKSVAISGPVVASGGE 52

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
           DDTI LYDL+ ++SLG++H H S++VT+L+FY P +L  PRNL S  A G VSIFDAD F
Sbjct: 53  DDTIQLYDLAAAASLGSLHTH-SATVTALSFYAPPHLPFPRNLVSADAAGNVSIFDADGF 111

Query: 121 VLLTSVKVHKKG-VNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
           V LT++ VH+   +NDLA+H SG+ ALTV RDDCLA+VNLVRGRR+   ++GKEASL+KF
Sbjct: 112 VHLTTISVHRNAAINDLALHPSGQRALTVARDDCLAVVNLVRGRRNCCLRLGKEASLVKF 171

Query: 180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDT 239
           D +G++FFMV +EKV +HQ EDA++L E +  K +LCA P +NG+L+TGGEDR+ITAWD 
Sbjct: 172 DATGDQFFMVVKEKVSVHQTEDARILFEFECPKPVLCATPAKNGLLYTGGEDRNITAWDI 231

Query: 240 NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP 299
            +GKVAYC+E+AH+ARVKGIV LT +DG +  +NPYLVASASSDG+I VWDVRMA +EK 
Sbjct: 232 KTGKVAYCLEEAHTARVKGIVALTDSDGATGDDNPYLVASASSDGIIRVWDVRMAAREK- 290

Query: 300 LPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS 330
            PL E  T SRLTCLAGSS K FKRPQ G S
Sbjct: 291 -PLTEHNTRSRLTCLAGSSLK-FKRPQDGKS 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	343
TAIR|locus:2014988	345	AT1G65030 "AT1G65030" [Arabido	0.994	0.988	0.621	1.8e-112
UNIPROTKB|Q9NWT1	392	PAK1IP1 "p21-activated protein	0.871	0.762	0.331	7.8e-39
ZFIN|ZDB-GENE-030131-8414	368	pak1ip1 "PAK1 interacting prot	0.854	0.796	0.305	1.7e-36
UNIPROTKB|E2RDQ1	394	PAK1IP1 "Uncharacterized prote	0.865	0.753	0.311	2.1e-36
RGD|1565353	382	Pak1ip1 "PAK1 interacting prot	0.871	0.782	0.318	3.5e-36
MGI|MGI:1915333	382	Pak1ip1 "PAK1 interacting prot	0.871	0.782	0.308	2.2e-34
UNIPROTKB|F1MRA9	392	PAK1IP1 "p21-activated protein	0.932	0.816	0.289	5.8e-34
UNIPROTKB|Q5EA99	392	PAK1IP1 "p21-activated protein	0.932	0.816	0.286	1.2e-33
UNIPROTKB|F1NWB8	367	PAK1IP1 "p21-activated protein	0.930	0.869	0.303	3.2e-33
UNIPROTKB|Q5ZKU8	369	PAK1IP1 "p21-activated protein	0.935	0.869	0.301	6.7e-33

TAIR|locus:2014988 AT1G65030 "AT1G65030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 215/346 (62%), Positives = 266/346 (76%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             MS+IAGSYE+FIWG+KLKP+ H  ++ +TLTL+ LFSYP+H+SPI               
Sbjct:     1 MSIIAGSYERFIWGFKLKPTKH-DAESQTLTLSPLFSYPSHISPITTVACSGPAAASGGS 59

Query:    61 XXXIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP 119
                IHLYDL ++SSLG++  H+ ++S+T+L+FYTP +LS PRNL S +ADG V+IFD DP
Sbjct:    60 DDTIHLYDLPSASSLGSLLDHNHAASITALSFYTPSSLSFPRNLISAAADGSVAIFDTDP 119

Query:   120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF 179
             FVLL S + HKK VNDLA+H SGKLAL V RD+  AM+NLVRG+RSF  ++G EASL+KF
Sbjct:   120 FVLLKSFRPHKKAVNDLAIHPSGKLALAVYRDEFFAMLNLVRGKRSFCCRLGHEASLVKF 179

Query:   180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCAAPGENGVLFTGGEDRSITAW 237
             D SGE+F+MV   KVG+HQ+EDAKLL EL+   +KRILCA PGE+G LFTGGEDR+ITAW
Sbjct:   180 DPSGERFYMVVSNKVGVHQSEDAKLLLELENPSRKRILCATPGESGTLFTGGEDRAITAW 239

Query:   238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE 297
             DTNSGK+AY IEDAH AR+KGIVVLT+ND   + E+PYL+ SASSDG+I VWDVRMA KE
Sbjct:   240 DTNSGKLAYSIEDAHPARIKGIVVLTRNDSDGSLEDPYLIGSASSDGIIRVWDVRMAAKE 299

Query:   298 KPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASMEDS 343
                PLAE  T SRLTCLAGS+ KS +RPQIG   P+  ++   EDS
Sbjct:   300 NTKPLAETNTKSRLTCLAGSALKSMRRPQIGKQEPQKVDEEH-EDS 344

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

UNIPROTKB|Q9NWT1 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 104/314 (33%), Positives = 159/314 (50%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M L+AG YE+ ++G+ + P      D +  TL   F++ AH + +               
Sbjct:     1 MELVAGCYEQVLFGFAVHPEPEACGDHEQWTLVADFTHHAHTASLSAVAVNSRFVVTGSK 60

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                IH+YD+      GA+ HH S ++T L FY   N    R+L S + DG + I+DA  +
Sbjct:    61 DETIHIYDMKKKIEHGALVHH-SGTITCLKFYG--N----RHLISGAEDGLICIWDAKKW 113

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct:   114 ECLKSIKAHKGQVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWS 173

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
               GE++ ++ + K+ I+Q + A +   +  +KRI         VL   G++  I  +D +
Sbjct:   174 PRGEQYVVIIQNKIDIYQLDTASISGTITNEKRISSVKFLSESVLAVAGDEEVIRFFDCD 233

Query:   241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
             S  V  C   AH  RVK +            E+ +++ SASSDG I +W ++   K  P 
Sbjct:   234 S-LVCLCEFKAHENRVKDMFSF------EIPEH-HVIVSASSDGFIKMWKLKQDKKVPPS 285

Query:   301 PLAEAKTNSRLTCL 314
              L E  TN+RLTCL
Sbjct:   286 LLCEINTNARLTCL 299

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-8414 pak1ip1 "PAK1 interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 96/314 (30%), Positives = 158/314 (50%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             + L+AG YE+ ++GY++ P+     D++  T+   F++ AH + +               
Sbjct:    12 IELVAGCYEQIVFGYRVCPA-----DEEW-TIEPTFTHHAHTASLNAVSSSNQFIATGSK 65

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                I LYD+   +  GA+ HH+ + ++ L FY   +L       S   DG + ++    +
Sbjct:    66 DETIQLYDMCKKTEHGALLHHDGT-ISCLEFYGTSHL------LSGGQDGLICVWSTKKW 118

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L +++ HK  V  L+VH SGKLAL+VG D  L   NL+ GR +F   I + A ++ + 
Sbjct:   119 ECLKTIRAHKGQVTSLSVHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKQNAEIVLWS 178

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
               G+K+ +V  +KV I+  + A ++  +   KRI C    +N +L  GG+D S+  +D  
Sbjct:   179 PDGDKYAVVVNDKVDIYTLDSATIIGTIAFTKRISCLKFLKNSLLAVGGDDESVRIYDVT 238

Query:   241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
             S K   C   AH  RVK I    K+D         ++ +AS+DG I +W + +   E P 
Sbjct:   239 SQKCV-CEFKAHENRVKAIESFMKDDF-------CVLVTASNDGFIKLWKLNLESIESPT 290

Query:   301 PLAEAKTNSRLTCL 314
              L +  T +RLTCL
Sbjct:   291 LLGQLNTTARLTCL 304

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2RDQ1 PAK1IP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 99/318 (31%), Positives = 160/318 (50%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQL--FSYPAHLSPIXXXXXXXXXXXXX 58
             M L+AG YE+ ++G+ ++       + +    T +  F++ AH + +             
Sbjct:     1 MELVAGCYEQVLFGFAIRREPDAGGEHREQKWTAVADFTHHAHTASLSAVAVNSRFVVTG 60

Query:    59 XXXXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD 118
                  IH+YD+      GA+ HH + ++T L FY   N    R+L S + DG + ++DA 
Sbjct:    61 SKDETIHIYDMKKKIDHGALVHH-NGTITCLKFYG--N----RHLISGAEDGLICVWDAK 113

Query:   119 PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIK 178
              +  L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A +++
Sbjct:   114 KWECLKSIKAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVE 173

Query:   179 FDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWD 238
             +   GE++ +V   K+ ++Q + A +   +  +KRI         VL   G++  +  +D
Sbjct:   174 WSPRGERYIVVILNKINVYQLDTASVSGTITNEKRISSVTFLSESVLAVAGDEEVVRFFD 233

Query:   239 TNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP--YLVASASSDGVICVWDVRMAIK 296
              +S     C   AH  RVK I          + E+P  +++ +ASSDG I +W ++   K
Sbjct:   234 CDS-LTCVCEFKAHENRVKDIF---------SFEDPEHHIIVTASSDGFIKMWKLKQDKK 283

Query:   297 EKPLPLAEAKTNSRLTCL 314
               P  L E KTN+RLTCL
Sbjct:   284 VPPSLLCEVKTNARLTCL 301

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1565353 Pak1ip1 "PAK1 interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 100/314 (31%), Positives = 156/314 (49%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M L+AGSYE+ ++G+ +      S  ++T T    F++ AH + +               
Sbjct:     1 MELVAGSYEQVLFGFTVHRGPAKSGHRETWTPVADFTHHAHTASLSAVAANNRYVVTGSK 60

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                IH+YD+      GA+ HH S +VT L FY        R+L S + DG + ++DA  +
Sbjct:    61 DETIHIYDMKKKVEHGALVHH-SGTVTCLKFYGS------RHLISGAEDGLICVWDAKKW 113

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L S+K H+  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct:   114 ECLKSIKAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQNAHIVEWS 173

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
              +GEK+ +V   KV ++  + A +   L   KRI       + VL   G++  +  +D +
Sbjct:   174 PNGEKYVVVVMNKVDVYHLDTASVSGTLTNGKRISAITFLSDSVLAVAGDEEVVRFFDCD 233

Query:   241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
             +  V  C   AH  RVK +V     D        +++ +AS+DG I +W +    K  P 
Sbjct:   234 T-LVCLCEFKAHENRVKDMVSFEIPDH-------HVLVTASNDGFIKMWTLTQDKKAPPS 285

Query:   301 PLAEAKTNSRLTCL 314
              L E  T +RLTCL
Sbjct:   286 LLCETNTGARLTCL 299

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1915333 Pak1ip1 "PAK1 interacting protein 1" [Mus musculus (taxid:10090)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 97/314 (30%), Positives = 157/314 (50%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M L+AGSYE+ ++G+ ++     S  Q+T T    F++ +H + +               
Sbjct:     1 MELVAGSYEQVLFGFTVQRGPAKSGHQETWTPVADFTHHSHTASLSVLASNSRYVVSGSK 60

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                IH+YD+      GA+ HH + +VT L F+  Q+L       S + DG + I+D   +
Sbjct:    61 DETIHIYDMKRKVEHGALVHH-AGTVTCLKFHGNQHL------ISGAEDGHICIWDVKRW 113

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L + K H+  V  L++H SGKLAL+VG D  L   NL+ GR +F   I + A ++++ 
Sbjct:   114 KCLKTFKAHRGHVTFLSIHPSGKLALSVGTDKTLRTWNLIEGRSAFIKNIKENAHIVEWS 173

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
              SG K+ +V + KV +++   A +   +   KRI       + VL   G++  +  +D +
Sbjct:   174 PSGGKYIVVVQNKVDVYRLGTASVSGTITNGKRISSVTFLSDSVLAVAGDEEVVRIFDCD 233

Query:   241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL 300
             S +   C   AH  RVK +V     D        +++ +AS+DG I +W +    K  P 
Sbjct:   234 SLE-CLCEFRAHENRVKDMVSFEVPDH-------HVLVTASNDGFIKMWTLPQDKKVPPS 285

Query:   301 PLAEAKTNSRLTCL 314
              L EAKT +RLTCL
Sbjct:   286 LLCEAKTGARLTCL 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009968 "negative regulation of signal transduction" evidence=IEA

UNIPROTKB|F1MRA9 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 100/345 (28%), Positives = 168/345 (48%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M ++AG YE+ ++G+ + P       ++       F++ AH + +               
Sbjct:     1 MEVVAGCYEQVLFGFAVHPEPVGDGHRERWAPVADFTHHAHTASLSAVAVNSRFVVTGSK 60

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                IH+YD+      GA+ HH + ++T L F+   N    R+L S + DG + ++DA  +
Sbjct:    61 DETIHIYDMKKKVDHGALMHH-NGTITCLKFHG--N----RHLISGAEDGLICVWDARRW 113

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L S++ HK  V  L++H SGKLAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct:   114 ECLKSIRAHKGHVTFLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNIKQSAHIVEWS 173

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
               GEK+ +V   ++ ++Q + A +   +  ++R+         VL   G++  +  +D +
Sbjct:   174 PKGEKYVVVILNRIDVYQLDTASVSGTITNERRVSSVTFLSESVLTVAGDEEVVRFFDCD 233

Query:   241 SGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK 298
             S     C+ +  AH  RVK +          T E+  LV +ASSDG I +W ++   K  
Sbjct:   234 S---LTCLSEFKAHENRVKDMFSF------ETPEHHVLV-TASSDGFIKMWKLKQDKKVS 283

Query:   299 PLPLAEAKTNSRLTCLA-----GSSTKSFKRPQIGDSAPKGEEKA 338
             P  L E  TN+RLTCL       + TK    P   + AP  +E++
Sbjct:   284 PSLLCEINTNARLTCLGVWLDRRTDTKE-SPPAAAEPAPVSKEQS 327

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5EA99 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 99/345 (28%), Positives = 168/345 (48%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M ++AG YE+ ++G+ + P       ++       F++ AH + +               
Sbjct:     1 MEVVAGCYEQVLFGFAVHPEPVGDGHRERWAPVADFTHHAHTASLSAVAVNSRFVVTGSK 60

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                IH+YD+      GA+ HH + ++T L F+   N    R+L S + DG + ++DA  +
Sbjct:    61 DETIHIYDMKKKVDHGALMHH-NGTITCLKFHG--N----RHLISGAEDGLICVWDARRW 113

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L S++ HK  V  L++H SG+LAL+VG D  L   NLV GR +F   I + A ++++ 
Sbjct:   114 ECLKSIRAHKGHVTFLSIHPSGRLALSVGTDKTLRTWNLVEGRSAFIKNIKQSAHIVEWS 173

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
               GEK+ +V   ++ ++Q + A +   +  ++R+         VL   G++  +  +D +
Sbjct:   174 PKGEKYVVVILNRIDVYQLDTASVSGTITNERRVSSVTFLSESVLTVAGDEEVVRFFDCD 233

Query:   241 SGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK 298
             S     C+ +  AH  RVK +          T E+  LV +ASSDG I +W ++   K  
Sbjct:   234 S---LTCLSEFKAHENRVKDMFSF------ETPEHHVLV-TASSDGFIKMWKLKQDKKVS 283

Query:   299 PLPLAEAKTNSRLTCLA-----GSSTKSFKRPQIGDSAPKGEEKA 338
             P  L E  TN+RLTCL       + TK    P   + AP  +E++
Sbjct:   284 PSLLCEINTNARLTCLGVWLDRRTDTKE-SPPAAAEPAPVSKEQS 327

GO:0005730 "nucleolus" evidence=IEA

GO:0009968 "negative regulation of signal transduction" evidence=IEA

UNIPROTKB|F1NWB8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 104/343 (30%), Positives = 161/343 (46%)

Query:     3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXXXX 62
             L+AG YE+ ++G+  +P   +       T+T  F++ AH + +                 
Sbjct:     1 LVAGCYEQILFGFAARPGEPW-------TVTPDFTHHAHTASLSAVAVNSKYVVTGSRDE 53

Query:    63 XIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL 122
              I +YD+      GA+  H + ++T L FY   +L       S + DG + I++   +  
Sbjct:    54 SIQIYDMRKKVEHGALLQH-NGTITCLEFYGTAHL------LSGAEDGLICIWNTKRWEC 106

Query:   123 LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGS 182
             L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   + + A +IK+   
Sbjct:   107 LKSIKAHKGHVTSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNLKQNAHIIKWSPD 166

Query:   183 GEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSG 242
             GEK+  V   KV I++ + A +   +  +KRI       + VL   G+D  I  +  +S 
Sbjct:   167 GEKYVTVITNKVDIYKLDTASITGTITIEKRISSIRFITDSVLAIAGDDEIIRFYSCDSQ 226

Query:   243 KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-AIKEKPLP 301
             K   C   AH  R+K I    +       E  +++ +ASSDG I VW++ +  I   P  
Sbjct:   227 K-CLCEFKAHENRIKDIYSFER-------EGQHVIVTASSDGYIKVWNLDLNKINNVPSL 278

Query:   302 LAEAKTNSRLTCLA-GSSTKSFKRPQIGDSAPKGEEKASMEDS 343
             L E  T +RLTCLA      S  +   G +A   E   S + S
Sbjct:   279 LCEVSTKARLTCLAVWLDQASEMKENCGKAATSTEANESEKPS 321

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q5ZKU8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 104/345 (30%), Positives = 161/345 (46%)

Query:     1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIXXXXXXXXXXXXXXX 60
             M L+AG YE+ ++G+  +P   +       T+T  F++ AH + +               
Sbjct:     1 MELVAGCYEQILFGFAARPGEPW-------TVTPDFTHHAHTASLSAVAVNSKYVVTGSR 53

Query:    61 XXXIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF 120
                I +YD+      GA+  H + ++T L FY   +L       S + DG + I++   +
Sbjct:    54 DESIQIYDMRKKVEHGALLQH-NGTITCLEFYGTAHL------LSGAEDGLICIWNTKRW 106

Query:   121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD 180
               L S+K HK  V  L++H SGKLAL+VG D  L   NLV GR +F   + + A +IK+ 
Sbjct:   107 ECLKSIKAHKGHVTSLSIHPSGKLALSVGTDKTLRTWNLVEGRSAFIKNLKQNAHIIKWS 166

Query:   181 GSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN 240
               GEK+  V   KV I++ + A +   +  +KRI       + VL   G+D  I  +  +
Sbjct:   167 PDGEKYVTVITNKVDIYKLDTASITGTITIEKRISSIRFITDSVLAIAGDDEIIRFYSCD 226

Query:   241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-AIKEKP 299
             S K   C   A   R+K I    +       E  +++ +ASSDG I VW++ +  I   P
Sbjct:   227 SQK-CLCEFKARENRIKDIYSFER-------EGQHVIVTASSDGYIKVWNLDLNKINNVP 278

Query:   300 LPLAEAKTNSRLTCLA-GSSTKSFKRPQIGDSAPKGEEKASMEDS 343
               L E  T +RLTCLA      S  +   G +A   E   S + S
Sbjct:   279 SLLCEVSTKARLTCLAVWLDQASEMKENCGKAATSTEANESEKPS 323

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6TNS2	PK1IP_DANRE	No assigned EC number	0.3130	0.8862	0.8260	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G65030	transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase (345 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G45620	transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (481 aa)							•		0.887
	AT1G04140	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (793 aa)							•		0.879
	DDB1B	DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding; One of two clos [...] (1088 aa)					•		•		0.859
	DDB1A	DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding; Structurally similar to [...] (1088 aa)					•		•		0.834
	MSI3	MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); protein binding; Encodes a WD-40 repeat protein similar [...] (424 aa)				•			•		0.719
	AT3G13230	RNA binding; RNA binding; FUNCTIONS IN- RNA binding; LOCATED IN- cellular_component unknown; EX [...] (215 aa)				•					0.619
	AT1G23280	MAK16 protein-related; MAK16 protein-related; FUNCTIONS IN- molecular_function unknown; INVOLVE [...] (303 aa)				•			•		0.619
	AT1G31660	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (444 aa)				•					0.612
	AT5G49430	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (1677 aa)							•		0.599
	AT2G47410	nucleotide binding; nucleotide binding; FUNCTIONS IN- nucleotide binding; LOCATED IN- CUL4 RING [...] (1520 aa)							•		0.599

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	343
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.9 bits (239), Expect = 9e-23
 Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 26/268 (9%)

Query: 31  TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTS 88
           T   L +   H  P+  VA S  GT  ASG +D TI L+DL T   +  +  H S  V+S
Sbjct: 40  TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-VSS 98

Query: 89  LAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV 148
           +AF     +     L S+S D  + ++D +    LT+++ H   VN +A    G    + 
Sbjct: 99  VAFSPDGRI-----LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 149 GRDDCLAMVNLVRGR--RSFY-HKIGKEASLIKFDGSGEKFFMVTEEK-VGIHQAEDAKL 204
            +D  + + +L  G+   +   H    E + + F   GEK    + +  + +      K 
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 205 LCELDGK-KRILCAAPGENGVLFTGG-EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL 262
           L  L G    +   A   +G L   G ED +I  WD  +G+    +   H+  V  +   
Sbjct: 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAW- 269

Query: 263 TKNDGGSTAENPYLVASASSDGVICVWD 290
              DG         +AS S+DG I +WD
Sbjct: 270 -SPDGK-------RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 64/291 (21%), Positives = 109/291 (37%), Gaps = 32/291 (10%)

Query: 41  HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLS 98
           H   +T VA S  G   A+G  D TI ++DL T   L  +  H +  V  +A        
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGTY- 65

Query: 99  VPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN 158
               L S S+D  + ++D +    + ++  H   V+ +A    G++  +  RD  + + +
Sbjct: 66  ----LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 159 LVRGRRSF-YHKIGKEASLIKFDGSGEKFFMVT----EEKVGIHQAEDAKLLCELDG-KK 212
           +  G+            + + F   G     V     +  + +      K +  L G   
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGT---FVASSSQDGTIKLWDLRTGKCVATLTGHTG 178

Query: 213 RILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA 271
            +   A   +G  L +   D +I  WD ++GK    +   H   V  +            
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSP-------- 229

Query: 272 ENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
            + YL+AS S DG I VWD+R     + L        + +T LA S     
Sbjct: 230 -DGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKR 275

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 9   EKFIWGYKLKPSNHY---SSDQKTL------TLTQLFSYPAHLSPITTVAVSGTA--AAS 57
             ++      P       SS  KT+      T   L +   H   + +VA S      AS
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 58  GGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA 117
              D TI L+DL T   +  +  H    V S+AF +P        L S+S+DG + ++D 
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHT-GEVNSVAF-SPDG----EKLLSSSSDGTIKLWDL 206

Query: 118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD 151
                L +++ H+ GVN +A    G L  +   D
Sbjct: 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 4e-14
 Identities = 75/326 (23%), Positives = 120/326 (36%), Gaps = 24/326 (7%)

Query: 7   SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTI 64
                     L  +    S      L+ L     H   IT++A S  G    SG +D TI
Sbjct: 31  LSLGSSESGILLLALLSDSLVSLPDLSSLLLRG-HEDSITSIAFSPDGELLLSGSSDGTI 89

Query: 65  HLYDLSTSSS-LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD-ADPFVL 122
            L+DL      + ++     SSV+ LA  +P   S+   L S+S DG V ++D + P  L
Sbjct: 90  KLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI--LLASSSLDGTVKLWDLSTPGKL 147

Query: 123 LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR--SFYHKIGKEASLIKFD 180
           + +++ H + V  LA    GKL  +    D    +  +R  +  S         S + F 
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207

Query: 181 GSGEKFFMVTEEKVGIH---QAEDAKLLCELDGKKRILCAAPGENG-VLFTGGEDRSITA 236
             G            I     +    L   L G    + ++   +G +L +G  D +I  
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRL 267

Query: 237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK 296
           WD  S          HS+ V  +             +  L+AS SSDG + +WD+     
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFS---------PDGKLLASGSSDGTVRLWDLET--G 316

Query: 297 EKPLPLAEAKTNSRLTCLAGSSTKSF 322
           +    L        ++ L+ S   S 
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSL 342

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 7e-11
 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 28/273 (10%)

Query: 31  TLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSL-GAIHHHESSSV 86
           T   L +   H  P++++A S   G   ASG +D TI L+DLST   L   +  H  S V
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 87  TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVKVHKKGVNDLAVHHSGKLA 145
           +S +            L S S+DG + ++D      LL ++  H   V  +A    GKL 
Sbjct: 247 SSFSPD-------GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 146 LTVGRDDCLAMVNLVRGRRSFYHKI---GKEASLIKFDGSGEKFF--MVTEEKVGIHQAE 200
            +   D  + + +L  G+      +       S + F   G         +  + +    
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 201 DAKLLCELDGKKRILCAAPGENGVLF-TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI 259
             K L  L+G   +L  +   +G +  +G  D ++  WD ++G +     D H++RV  +
Sbjct: 360 TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR-NLDGHTSRVTSL 418

Query: 260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
                            +AS SSD  I +WD++
Sbjct: 419 DFSPDGK---------SLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 67/298 (22%), Positives = 109/298 (36%), Gaps = 24/298 (8%)

Query: 2   SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTD 61
            L++GS +  I  + L          + L  + +         +++   +    AS   D
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA-----LSSPDGNSILLASSSLD 133

Query: 62  DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV 121
            T+ L+DLST   L       S SVTSLAF +P    +      +S DG + ++D     
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGKLL---ASGSSLDGTIKLWDLRTGK 189

Query: 122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV-NLVRGRRSFYHKIGKEASLIKFD 180
            L+++  H   V+ LA    G L +  G  D    + +L  G+       G   S++   
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 181 GSGEKFFMVTEEKVGIH---QAEDAKLLCELDG-KKRILCAA-PGENGVLFTGGEDRSIT 235
                          I        + LL  L G    +L  A   +  +L +G  D ++ 
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309

Query: 236 AWDTNSGKVAY-CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
            WD  +GK+        H   V  +                LV+  S DG I +WD+R
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS--------LLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR--RSFY-HKIGKEASLIK 178
           L  ++K H  GV  +A    GKL  T   D  + + +L  G   R+   H        + 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRD--VA 58

Query: 179 FDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDG-KKRILCAAP-GENGVLFTGGEDRSIT 235
               G      + +K + +   E  + +  L G    +   A   +  +L +   D++I 
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
            WD  +GK    +   H+  V  +                 VAS+S DG I +WD+R
Sbjct: 119 VWDVETGKCLTTLRG-HTDWVNSVAFSPDGT---------FVASSSQDGTIKLWDLR 165

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 43  SPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN 102
           S +++ +  G+  ASG +D TI L+DL +SSSL       SSSV S+AF         + 
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF-----SPDGKL 298

Query: 103 LFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNL 159
           L S S+DG V ++D +    +   ++K H+  V+ L+    G  L      D  + + +L
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Query: 160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG-KKRILCA 217
             G+     +       + F   G       T+  V +       LL  LDG   R+   
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Query: 218 APGENGV-LFTGGEDRSITAWDTNS 241
               +G  L +G  D +I  WD  +
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	343
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PTZ00421	493	coronin; Provisional	99.98
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0649	325	consensus WD40 repeat protein [General function pr	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.65
PRK03629	429	tolB translocation protein TolB; Provisional	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.51
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
KOG1334	559	consensus WD40 repeat protein [General function pr	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.45
PRK00178	430	tolB translocation protein TolB; Provisional	99.44
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.43
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.42
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.4
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.4
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.36
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.31
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.24
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.23
KOG2315	566	consensus Predicted translation initiation factor	99.22
KOG2695	425	consensus WD40 repeat protein [General function pr	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.18
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.17
KOG2314	698	consensus Translation initiation factor 3, subunit	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.14
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.13
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.09
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.05
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.05
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.98
KOG2314	698	consensus Translation initiation factor 3, subunit	98.98
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.97
PRK02888	635	nitrous-oxide reductase; Validated	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.92
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.92
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.9
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.88
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.85
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.79
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.77
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.65
KOG3621	726	consensus WD40 repeat-containing protein [General	98.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.6
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.55
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.5
KOG3621	726	consensus WD40 repeat-containing protein [General	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.37
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.34
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.34
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.33
PF14727	418	PHTB1_N: PTHB1 N-terminus	98.29
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.27
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.23
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
COG3391	381	Uncharacterized conserved protein [Function unknow	98.01
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.99
KOG2444	238	consensus WD40 repeat protein [General function pr	97.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.89
KOG2395	644	consensus Protein involved in vacuole import and d	97.89
PRK13616	591	lipoprotein LpqB; Provisional	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
PHA02713	557	hypothetical protein; Provisional	97.84
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.83
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.8
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.78
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.76
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.72
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.71
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.67
COG3391	381	Uncharacterized conserved protein [Function unknow	97.63
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.63
KOG2395	644	consensus Protein involved in vacuole import and d	97.57
PHA02713	557	hypothetical protein; Provisional	97.54
COG3292	671	Predicted periplasmic ligand-binding sensor domain	97.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.47
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.45
KOG2444	238	consensus WD40 repeat protein [General function pr	97.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.36
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.34
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.3
PRK13616	591	lipoprotein LpqB; Provisional	97.3
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.24
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.23
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	97.15
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.09
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.05
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.93
PHA03098	534	kelch-like protein; Provisional	96.89
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.85
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.8
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	96.78
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.73
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.72
PHA02790	480	Kelch-like protein; Provisional	96.71
COG5167	776	VID27 Protein involved in vacuole import and degra	96.65
PHA03098	534	kelch-like protein; Provisional	96.54
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.53
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.23
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.09
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.05
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.91
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.81
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.81
PRK13684	334	Ycf48-like protein; Provisional	95.73
PHA02790	480	Kelch-like protein; Provisional	95.71
COG5276	370	Uncharacterized conserved protein [Function unknow	95.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.34
COG5276	370	Uncharacterized conserved protein [Function unknow	95.3
COG5167	776	VID27 Protein involved in vacuole import and degra	95.24
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.12
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.99
KOG2247	615	consensus WD40 repeat-containing protein [General	94.94
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.74
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.59
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.27
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.26
PRK13684	334	Ycf48-like protein; Provisional	94.24
PRK10115	686	protease 2; Provisional	94.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.0
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.82
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.6
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.46
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.33
KOG2247	615	consensus WD40 repeat-containing protein [General	93.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.18
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.01
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.92
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	92.84
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.84
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.71
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	92.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.48
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.75
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.65
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.52
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.05
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.95
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.89
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.89
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.83
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.58
PRK10115	686	protease 2; Provisional	90.55
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.18
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.11
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.94
COG4590	733	ABC-type uncharacterized transport system, permeas	89.89
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	89.33
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	89.29
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	89.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.08
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.62
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.8
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.76
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.59
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	87.3
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.3
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	87.27
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	87.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.88
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.87
PLN02153	341	epithiospecifier protein	86.68
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	86.48
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	86.47
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.02
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.81
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	84.59
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.91
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.37

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-50  Score=311.43  Aligned_cols=305  Identities=22%  Similarity=0.263  Sum_probs=263.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee-eEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL-GAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~   78 (343)
                      +|++|+.|.++|+||+.+            ..+.++.++|...|.|++|+  |..||+|+.||+|++||.++++++ ..+
T Consensus       129 ~l~tGsGD~TvR~WD~~T------------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  129 RLVTGSGDTTVRLWDLDT------------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             eEEecCCCceEEeeccCC------------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence            689999999999999998            57788999999999999999  899999999999999999998765 567


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .+| ...|++|+|.|-.-....++|++++.||.|+|||+..++++..+.+|..+|+|+.|--+| ++++++.|++|++|+
T Consensus       197 ~gH-~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~  274 (480)
T KOG0271|consen  197 RGH-KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWR  274 (480)
T ss_pred             cCc-ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEE
Confidence            888 999999999986533444799999999999999999999999999999999999998654 899999999999999


Q ss_pred             ccCCceeEEEE-cCCcceEEEEe-----------CCC-------------------------CEEEEE-eCCcEEEEEcc
Q 019326          159 LVRGRRSFYHK-IGKEASLIKFD-----------GSG-------------------------EKFFMV-TEEKVGIHQAE  200 (343)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~-----------~~~-------------------------~~~~~~-~~~~i~~~d~~  200 (343)
                      ...|....... +.+.|+.++++           |.+                         +.++++ .|.++.+|+..
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            99887655443 44666666654           323                         358888 89999999976


Q ss_pred             cce-eEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          201 DAK-LLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       201 ~~~-~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      ..+ ++..+. |..-|+.+.|+| +.++++++.|..|++||.++|+.+.+++ +|-.+|..++|+.+..         +|
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsR---------Ll  424 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSR---------LL  424 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCcc---------EE
Confidence            544 554444 888999999995 6799999999999999999999999999 9999999999999987         99


Q ss_pred             EEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          278 ASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       278 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                      ++||.|.++++|++++.+.....|    .+...|.+++|+|||...+.+..|+..+.
T Consensus       425 VS~SkDsTLKvw~V~tkKl~~DLp----Gh~DEVf~vDwspDG~rV~sggkdkv~~l  477 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKLKQDLP----GHADEVFAVDWSPDGQRVASGGKDKVLRL  477 (480)
T ss_pred             EEcCCCceEEEEEeeeeeecccCC----CCCceEEEEEecCCCceeecCCCceEEEe
Confidence            999999999999999875333222    35667999999999999999998876654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-47  Score=291.47  Aligned_cols=318  Identities=41%  Similarity=0.629  Sum_probs=289.1

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      |+|++|++...|.-+++...+..-.+....++.+++.+..|.++|+++|.++.++|+|+.|-+|+|||+.+...+..+..
T Consensus         2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec
Confidence            79999999999999999875433334566778899999999999999999999999999999999999999999999998


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | .+.|+++.|.++...   ..|++|+.||.|.+|+...++++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-
T Consensus        82 H-agsitaL~F~~~~S~---shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   82 H-AGSITALKFYPPLSK---SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             c-ccceEEEEecCCcch---hheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence            9 999999999988721   389999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECC
Q 019326          161 RGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~  240 (343)
                      +|+......+......+.|+|.|.+|++...+.|-+|.+.+......+..+..+.|+.|.+++.|++|.+|+.|.+||..
T Consensus       158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             cCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccC
Confidence            99999999999999999999999999999999999999999999998888889999999899999999999999999999


Q ss_pred             CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCC
Q 019326          241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  320 (343)
                      ...++..+. +|..+|.++.+..+..       +.+|+|+|.||.|+|||++...+..+.++.....+.+++|+...-..
T Consensus       238 s~~~~~~~~-AH~~RVK~i~~~~~~~-------~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~~~~  309 (362)
T KOG0294|consen  238 SDTPLTEFL-AHENRVKDIASYTNPE-------HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVKLEK  309 (362)
T ss_pred             CCccceeee-cchhheeeeEEEecCC-------ceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeehhhh
Confidence            999999999 9999999999765533       34999999999999999999988899999999999999999987666


Q ss_pred             ceeccccCCC
Q 019326          321 SFKRPQIGDS  330 (343)
Q Consensus       321 ~~~~~~~~~~  330 (343)
                      .-......++
T Consensus       310 ~~k~~~~~~~  319 (362)
T KOG0294|consen  310 SPKAKVESDQ  319 (362)
T ss_pred             cccccccccc
Confidence            5555444343

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.9e-48  Score=304.15  Aligned_cols=262  Identities=20%  Similarity=0.259  Sum_probs=247.1

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      +.|++|+.+|.+++|+...            ...+.+|.||...|.++.|+    +..+|||+.||++++|++.+..++.
T Consensus       188 ~~laT~swsG~~kvW~~~~------------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  188 KHLATGSWSGLVKVWSVPQ------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ  255 (459)
T ss_pred             CeEEEeecCCceeEeecCC------------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence            3589999999999999987            67888999999999999998    3489999999999999999999999


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      .+.+| ...|..++|+|+|     ++|++++.|.+-++||+.++..+...++|...|.+++|+|||..+++|+.|..-++
T Consensus       256 ~l~gH-~~RVs~VafHPsG-----~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  256 DLEGH-LARVSRVAFHPSG-----KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             hhhcc-hhhheeeeecCCC-----ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            99999 8999999999999     89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC--CCeEEEEeCC
Q 019326          157 VNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE--NGVLFTGGED  231 (343)
Q Consensus       157 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~~~~~d  231 (343)
                      ||+++++++.... +-.+|..+.|+|+|..++++ .|++++|||++..+.+..++ |..-|+.+.|++  +.+|++++.|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            9999999877655 55889999999999999999 99999999999999988888 888899999984  6799999999


Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ++++||..+++.+++.+. +|.+.|.++.+++++.         +++|++.|.++++|.
T Consensus       410 ~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~---------~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQ---------AIATSSFDRTIKLWR  458 (459)
T ss_pred             cceeeecCCCcccchhhc-CCccceEEEEeccCCc---------eEEEeccCceeeecc
Confidence            999999999999999999 9999999999999988         999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-46  Score=293.66  Aligned_cols=279  Identities=22%  Similarity=0.240  Sum_probs=252.9

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      |-..||..+.|+  ++.|+||+.+|.+++|+..+...+..|.+| ...|.++.|+|..+   ...+++|+.||++++|++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~---~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDS---DLNLATASADGTVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCC---ccceeeeccCCceeeecc
Confidence            567899999999  899999999999999999999999999999 99999999999831   268999999999999999


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE-EEcCCcceEEEEeCCCCEEEEE-eCCcEE
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY-HKIGKEASLIKFDGSGEKFFMV-TEEKVG  195 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~  195 (343)
                      .+-.++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+.. ..+...+.+++|.|+|..++++ .|..-+
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR  328 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence            99899999999999999999999999999999999999999999886554 4566889999999999999999 899999


Q ss_pred             EEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          196 IHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      |||+++++++..+. |..+|..+.|++ |..+++|+.|++++|||++....+..++ +|..-|+.+.|.|..        
T Consensus       329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~--------  399 (459)
T KOG0272|consen  329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQE--------  399 (459)
T ss_pred             eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccC--------
Confidence            99999999999998 889999999996 4589999999999999999999999999 999999999999832        


Q ss_pred             CeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          274 PYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      |++|+|+|.|++++||..++..+.+..    ..+.++|.++++++|+.+++...-|...+.+
T Consensus       400 g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             CeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEEeccCCceEEEeccCceeeec
Confidence            239999999999999999988533322    3556789999999999999999999887764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-46  Score=287.98  Aligned_cols=285  Identities=21%  Similarity=0.248  Sum_probs=247.9

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      .+-..+.||.++|.|++|+  +..|++|+.|.++|+||+.+..+..+.++| ...|.|++|+|++     +.|++|+.||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDg-----k~iASG~~dg  179 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDG-----KKIASGSKDG  179 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCc-----chhhccccCC
Confidence            4456788999999999999  899999999999999999999999999999 9999999999999     8999999999


Q ss_pred             eEEEEECCCccee-eeeeeccccEEEEEEec-----CCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCC
Q 019326          111 FVSIFDADPFVLL-TSVKVHKKGVNDLAVHH-----SGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSG  183 (343)
Q Consensus       111 ~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~  183 (343)
                      +|++||.++++++ ..+.+|...|++++|.|     ..++|++++.||.++|||+..+.++.... +..+|+|+.|--+|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence            9999999887754 67899999999999976     46899999999999999999888776554 55889999997544


Q ss_pred             CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec------------CC-------------------------Ce
Q 019326          184 EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG------------EN-------------------------GV  224 (343)
Q Consensus       184 ~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~------------~~-------------------------~~  224 (343)
                       +++++ .|++|++|+...+++.+.++ |...|+.++.+            .+                         ..
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence             56666 99999999999999998888 66667777664            02                         24


Q ss_pred             EEEEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc
Q 019326          225 LFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA  303 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  303 (343)
                      +++|++|.++.+|+.... +++..+. +|...|+.+.|+|++.         ++|++|.|..|++||-++++     .+.
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk-----~la  403 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGK-----FLA  403 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcc-----hhh
Confidence            999999999999998654 4777787 9999999999999988         99999999999999999985     223


Q ss_pred             ccc-cccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          304 EAK-TNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       304 ~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      .+. +-+.|..++|+.|.+++++++.|..++.++...
T Consensus       404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            332 556799999999999999999999998877654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-44  Score=266.64  Aligned_cols=289  Identities=18%  Similarity=0.194  Sum_probs=250.4

Q ss_pred             eEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC-----CeeeeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           32 LTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST-----SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      +....++++|++.|+.++..   .+.+++++.|..+.+|++..     |..++.+.+| ...|..+..++++     ++.
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH-sH~v~dv~~s~dg-----~~a   78 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH-SHFVSDVVLSSDG-----NFA   78 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc-ceEecceEEccCC-----ceE
Confidence            44566788999999999987   68999999999999998864     5678899999 9999999999999     899


Q ss_pred             EEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEeC
Q 019326          104 FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFDG  181 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~  181 (343)
                      ++++.|+++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|++|++|++...........  ...|+++.|+|
T Consensus        79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999987766555544  57899999999


Q ss_pred             C--CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccE
Q 019326          182 S--GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARV  256 (343)
Q Consensus       182 ~--~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v  256 (343)
                      +  ..+++.+ .|+.+++||+++.+....+. |.+.++.++++ ++.++++|+.||.+.+||++.++.++.+.  |...|
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v  236 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIV  236 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeE
Confidence            8  6677777 89999999999999988877 88899999999 56799999999999999999999999887  99999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccc-----ccceeEEEcCCCCceeccccCCCC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKT-----NSRLTCLAGSSTKSFKRPQIGDSA  331 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~~~~~~~~~~  331 (343)
                      .+++|+|+.          +.+.+..+..|+|||+.+........+.....     ...-.+++||++|..+..+..++.
T Consensus       237 ~sl~fspnr----------ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  237 NSLCFSPNR----------YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             eeEEecCCc----------eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence            999999997          55555566779999999885443333222222     234577899999999999999999


Q ss_pred             CCCcccc
Q 019326          332 PKGEEKA  338 (343)
Q Consensus       332 ~~~~~~~  338 (343)
                      ++.++..
T Consensus       307 irv~qv~  313 (315)
T KOG0279|consen  307 IRVWQVA  313 (315)
T ss_pred             EEEEEee
Confidence            8877654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-42  Score=259.65  Aligned_cols=260  Identities=20%  Similarity=0.267  Sum_probs=239.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC------e
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS------S   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~------~   73 (343)
                      +|++++.||.+.|||.-+            ..+.+.++-...+|..++|+  ++++|+|+-|+...||++.+.      +
T Consensus        69 ~ivSaSqDGklIvWDs~T------------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~  136 (343)
T KOG0286|consen   69 RIVSASQDGKLIVWDSFT------------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR  136 (343)
T ss_pred             eEEeeccCCeEEEEEccc------------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence            689999999999999877            45566667778999999999  999999999999999999865      4


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCCC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDD  152 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~  152 (343)
                      ..+++.+| .+.+.|+.|.+++      .|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|+-|+
T Consensus       137 v~r~l~gH-tgylScC~f~dD~------~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~  209 (343)
T KOG0286|consen  137 VSRELAGH-TGYLSCCRFLDDN------HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK  209 (343)
T ss_pred             eeeeecCc-cceeEEEEEcCCC------ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc
Confidence            55678899 9999999999976      899999999999999999999999999999999999999 899999999999


Q ss_pred             eEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC---cceEEeeec-CCCeEE
Q 019326          153 CLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK---KRILCAAPG-ENGVLF  226 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~-~~~~l~  226 (343)
                      ..++||++.+.+...+. +...|+.++|.|+|..|+++ .|+.+++||++..+.+..+.+.   .+|++++|+ .+++|+
T Consensus       210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             ceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence            99999999998877655 45889999999999999999 9999999999999999988854   679999999 688999


Q ss_pred             EEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +|..|..+.+||.-.++.+..+. +|...|+++..+|++.         .++|||.|.+++||.
T Consensus       290 agy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~---------av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGM---------AVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCc---------EEEecchhHheeecC
Confidence            99999999999999999999999 9999999999999998         999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-42  Score=258.50  Aligned_cols=268  Identities=19%  Similarity=0.202  Sum_probs=234.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      |+.++.|..+.+|++..       .......+++.++||...|..++.+  |++.++++.|+++++||+.+++..+.|.+
T Consensus        31 l~sasrDk~ii~W~L~~-------dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G  103 (315)
T KOG0279|consen   31 LVSASRDKTIIVWKLTS-------DDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG  103 (315)
T ss_pred             EEEcccceEEEEEEecc-------CccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe
Confidence            67899999999999987       3333456788999999999999998  99999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec--cccEEEEEEecC--CCEEEEEeCCCeEEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH--KKGVNDLAVHHS--GKLALTVGRDDCLAM  156 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~--~~~l~~~~~d~~i~~  156 (343)
                      | ...|.+++|+++.     +.+++|+.|.+|++||.... +..++..+  .+.|.++.|+|+  ..+|++++.|+++++
T Consensus       104 H-~~dVlsva~s~dn-----~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv  176 (315)
T KOG0279|consen  104 H-TKDVLSVAFSTDN-----RQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV  176 (315)
T ss_pred             c-CCceEEEEecCCC-----ceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence            9 9999999999999     89999999999999999764 44444433  779999999998  689999999999999


Q ss_pred             EEccCCceeEE-EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcE
Q 019326          157 VNLVRGRRSFY-HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSI  234 (343)
Q Consensus       157 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i  234 (343)
                      ||+++.+.... ..+.+.++.++++|||...+.+ .++.+.+||++.++.+..+.+...|.+++|+|+++.++...+..|
T Consensus       177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sI  256 (315)
T KOG0279|consen  177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSI  256 (315)
T ss_pred             EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCce
Confidence            99998775543 3455779999999999999999 999999999999999999999999999999999988888888889


Q ss_pred             EEEECCCCceeEEeccc--------ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          235 TAWDTNSGKVAYCIEDA--------HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +|||+.++..+.++...        ......+++|++++.         .|++|-.|+.|++|.+..
T Consensus       257 kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~---------tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  257 KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ---------TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc---------EEEeeecCCcEEEEEeec
Confidence            99999999887766521        123456778887777         999999999999998863

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.7e-41  Score=246.34  Aligned_cols=266  Identities=16%  Similarity=0.247  Sum_probs=230.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~   77 (343)
                      -|+++++|.+||+|...+            ..+.++++-..+.|+.|...  +..||+++. ..||+||+.+++  ++..
T Consensus        12 iLvsA~YDhTIRfWqa~t------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t   78 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALT------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT   78 (311)
T ss_pred             EEEeccCcceeeeeehhc------------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeE
Confidence            489999999999999988            57788888677889999998  677777775 569999999875  5888


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      |.+| ...|+++.|..++     +.+++|++||+++|||++...+.+.++ |..+|+++..+|+...|+++..+|.|++|
T Consensus        79 ~e~h-~kNVtaVgF~~dg-----rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvW  151 (311)
T KOG0315|consen   79 FEGH-TKNVTAVGFQCDG-----RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVW  151 (311)
T ss_pred             Eecc-CCceEEEEEeecC-----eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEE
Confidence            9999 9999999999999     899999999999999999976666666 78999999999999999999999999999


Q ss_pred             EccCCceeEEE--EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccce------eEEEec-CCcceEEeeecC-CCeEE
Q 019326          158 NLVRGRRSFYH--KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK------LLCELD-GKKRILCAAPGE-NGVLF  226 (343)
Q Consensus       158 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~------~~~~~~-~~~~i~~~~~~~-~~~l~  226 (343)
                      |+.+..+....  +....+..+...|+|..++.+ ..|.+++|++.+..      ++.+++ |...+..+.+++ +++|+
T Consensus       152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence            99987654433  334678899999999999999 99999999997754      333444 778888888885 67999


Q ss_pred             EEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          227 TGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                      +++.|.+++||+..+. +....+. +|...++..+|+.++.         ||+||+.|+.+++|++..++..
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~---------YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGE---------YLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEee-cCCceEEeeeeccCcc---------EEEecCCCCceeecccccCcee
Confidence            9999999999999987 5556667 9999999999999988         9999999999999999988633

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=245.82  Aligned_cols=287  Identities=15%  Similarity=0.135  Sum_probs=252.3

Q ss_pred             ceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           29 TLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        29 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      ...++..+.++||.+.|.++.|+  .+++++++.||.+.|||.-+...++.+.-. ...|..++|+|.+     ++++.|
T Consensus        42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg-----~~VAcG  115 (343)
T KOG0286|consen   42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSG-----NFVACG  115 (343)
T ss_pred             eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-ceeEEEEEECCCC-----CeEEec
Confidence            34566678999999999999999  889999999999999999999888888888 8999999999999     899999


Q ss_pred             eCCCeEEEEECCCc------ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEE
Q 019326          107 SADGFVSIFDADPF------VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKF  179 (343)
Q Consensus       107 ~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~  179 (343)
                      +.|+...||++.+.      +..+.+.+|.+.+.++.|.+| ..|++++.|.++.+||+++++.+..+. +...|.++.+
T Consensus       116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence            99999999999754      355678899999999999985 579999999999999999999877654 5588999999


Q ss_pred             eC-CCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc-cccc
Q 019326          180 DG-SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED-AHSA  254 (343)
Q Consensus       180 ~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~h~~  254 (343)
                      +| +++.++++ .|...++||++.+...+.|. |...|+++.|.| +.-+++|++|++.++||++..+.+..+.. .-..
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            99 89999999 99999999999999999998 889999999995 56899999999999999999998888871 1235


Q ss_pred             cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          255 RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                      +|++++|+..++         +|++|..|.++.+||.-.++...    .-..+..+|.|+..+|||.-+..++-|..++.
T Consensus       275 gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg----~L~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  275 GITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVG----VLAGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             CceeEEEccccc---------EEEeeecCCceeEeeccccceEE----EeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence            899999999988         99999999999999998764222    12356778999999999999999988877664


Q ss_pred             c
Q 019326          335 E  335 (343)
Q Consensus       335 ~  335 (343)
                      +
T Consensus       342 W  342 (343)
T KOG0286|consen  342 W  342 (343)
T ss_pred             c
Confidence            3

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.6e-41  Score=258.45  Aligned_cols=291  Identities=18%  Similarity=0.215  Sum_probs=256.3

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      +.+....+.+|.++|.|+++.  +.+|++|+.|++|+|||+.++++..++.+| -..|..+++++..     .++++++.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh-i~~vr~vavS~rH-----pYlFs~ge  213 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH-IETVRGVAVSKRH-----PYLFSAGE  213 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-hheeeeeeecccC-----ceEEEecC
Confidence            455667788999999999999  789999999999999999999999999999 9999999999988     89999999


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEE
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  187 (343)
                      |+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+.... +..+|..+.+.|-+..++
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            9999999999999999999999999999999999999999999999999999998877666 678999999999999999


Q ss_pred             EE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ++ .|++|++||++.++....+. |...+.+++.++..++++.+....|+-|++..|..+..+. +|..-|+++....++
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nls-gh~~iintl~~nsD~  372 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLS-GHNAIINTLSVNSDG  372 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccc-cccceeeeeeeccCc
Confidence            99 99999999999999988887 7788999999976544444444569999999999999988 999999999999887


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCC----cccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL----PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                                ++++|+..|.|.+||.+++-+.+..    ..........|.+.+|...+.-++.+..|+.++.+++.
T Consensus       373 ----------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  373 ----------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             ----------eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence                      8999999999999999998543322    11223344568999999999999999999987765543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9e-42  Score=267.87  Aligned_cols=266  Identities=18%  Similarity=0.229  Sum_probs=241.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      +|++|+..|...+|+...            +.-...++.|..+|.++.|+  +.++++|+.+|.|++|+.. ...+..++
T Consensus       110 RLltgs~SGEFtLWNg~~------------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~  176 (464)
T KOG0284|consen  110 RLLTGSQSGEFTLWNGTS------------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQ  176 (464)
T ss_pred             eeEeecccccEEEecCce------------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhh
Confidence            799999999999999765            44445567899999999999  8999999999999999976 45566777


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .|+...|++++|+|+.     ..|++++.||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.
T Consensus       177 ahh~eaIRdlafSpnD-----skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPND-----SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             HhhhhhhheeccCCCC-----ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence            7757999999999988     79999999999999999988888999999999999999999999999999999999999


Q ss_pred             cCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC--CCeEEEEeCCCcE
Q 019326          160 VRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE--NGVLFTGGEDRSI  234 (343)
Q Consensus       160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~~~~~dg~i  234 (343)
                      +++.++... .+...|..+.|++++++|+++ .|..+++||+++.+.+..++ |...++++.|++  .++|.+|+.||.|
T Consensus       252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence            999987654 556889999999999999999 99999999999888888888 899999999994  6799999999999


Q ss_pred             EEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          235 TAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ..|.+...+++..+..+|...|++++|+|-+.         +|++|+.|.++++|.-..+
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh---------il~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH---------ILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccce---------eEeecCCCcceeeeccCCC
Confidence            99999988888888889999999999999987         9999999999999976543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-39  Score=251.99  Aligned_cols=265  Identities=18%  Similarity=0.229  Sum_probs=240.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++|+.|++|+|||+.+            .+...++.||...|..++++  -.+|++++.|+.|+.||++..+.++.+.+
T Consensus       166 f~tgs~DrtikIwDlat------------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  166 FATGSADRTIKIWDLAT------------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             EEecCCCceeEEEEccc------------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcc
Confidence            78999999999999998            56778889999999999999  78999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | -+.|.|++.+|..     ..|++|+.|.++++||+++...+..+.+|..+|.++.+.|....+++|+.|++|++||++
T Consensus       234 H-lS~V~~L~lhPTl-----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  234 H-LSGVYCLDLHPTL-----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             c-cceeEEEeccccc-----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence            9 9999999999998     899999999999999999999999999999999999999988899999999999999999


Q ss_pred             CCceeEEEE-cCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          161 RGRRSFYHK-IGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                      .++...... +...+.+++.+|....|++++...++-|++..+..+..+. |...+++++...++++++|+++|.+..||
T Consensus       308 agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwd  387 (460)
T KOG0285|consen  308 AGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD  387 (460)
T ss_pred             cCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence            998766554 4578999999999999999999999999999999888877 77889999998889999999999999999


Q ss_pred             CCCCceeEEecc-------cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          239 TNSGKVAYCIED-------AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       239 ~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .+++...+....       .....|.+.+|...+.         .|++|..|.+|++|.-+..
T Consensus       388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~---------rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS---------RLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             cCcCcccccccccccCCccccccceeEEeecccCc---------eEEeccCCcceEEEecccc
Confidence            999876655420       1345788888888887         9999999999999987754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-40  Score=254.18  Aligned_cols=284  Identities=20%  Similarity=0.277  Sum_probs=253.3

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ..+.+.+|..+|+.+-|.  -..+++++.|++|++||..++++...+++| ...+..++|+..+     +++++++.|-.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~G-----k~l~tcSsDl~  173 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASG-----KYLATCSSDLS  173 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCc-----cEEEecCCccc
Confidence            345566899999999999  456778888999999999999999999999 8889999999998     89999999999


Q ss_pred             EEEEECCC-cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE
Q 019326          112 VSIFDADP-FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       112 i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  189 (343)
                      +++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++.++..+.. ...+..+..+.||..++++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence            99999976 678888999999999999999999999999999999999999998887654 4678999999999999999


Q ss_pred             -eCCcEEEEEcccceeEEEec-CCcceEEeeec----------------CCCeEEEEeCCCcEEEEECCCCceeEEeccc
Q 019326          190 -TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG----------------ENGVLFTGGEDRSITAWDTNSGKVAYCIEDA  251 (343)
Q Consensus       190 -~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~----------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  251 (343)
                       .+..+++|-+.+.++...+. |+.++.|++|.                .+.++++++.|++|++||+.++.++.++. +
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-g  332 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-G  332 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-c
Confidence             99999999999997777666 67777777763                12489999999999999999999999999 9


Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCC
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSA  331 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~  331 (343)
                      |...|.+++|+|.|+         ||+|+.+|+++++||+++..+.+..+    .+...++++++..+..+++.|.-|..
T Consensus       333 hdnwVr~~af~p~Gk---------yi~ScaDDktlrvwdl~~~~cmk~~~----ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGK---------YILSCADDKTLRVWDLKNLQCMKTLE----AHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             ccceeeeeEEcCCCe---------EEEEEecCCcEEEEEeccceeeeccC----CCcceeEEEecCCCCceEEeccccce
Confidence            999999999999988         99999999999999999987665554    33456999999999999999999999


Q ss_pred             CCCccc
Q 019326          332 PKGEEK  337 (343)
Q Consensus       332 ~~~~~~  337 (343)
                      .+.++.
T Consensus       400 ~KvwEc  405 (406)
T KOG0295|consen  400 VKVWEC  405 (406)
T ss_pred             eeeeec
Confidence            887764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.8e-39  Score=235.53  Aligned_cols=268  Identities=14%  Similarity=0.154  Sum_probs=232.8

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeeeeecc
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSVKVHK  130 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~  130 (343)
                      -+|++++.|.+||+|...+|.+.++++.. .+.|+.|...|++     +.|++++.- .|++||++++.  ++.++.+|.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk-----~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDK-----KDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCc-----chhhhccCC-eeEEEEccCCCCCceeEEeccC
Confidence            47999999999999999999999999977 8999999999998     677777654 79999997654  689999999


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~  209 (343)
                      ..|+++.|..+|+.+++|++||+++|||++...+.+.+.+..+|+++..+|+...|+++ .+|.|++||+.+..+...+-
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence            99999999999999999999999999999998888888899999999999999999999 99999999999887766665


Q ss_pred             --CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          210 --GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       210 --~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                        ...++.++... ++.+++++...|..++|++-+.      +++..++ +|...+..+.++|+..         +|+++
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k---------~lat~  233 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVK---------YLATC  233 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCc---------EEEee
Confidence              44678888887 6789999999999999998654      3566777 9999999999999988         99999


Q ss_pred             cCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccCc
Q 019326          281 SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       281 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      |.|.+++||+.++.-  +...... .+..-+...+||.|+.|++.+..|..++.++.+.-
T Consensus       234 ssdktv~iwn~~~~~--kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~  290 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDFF--KLELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG  290 (311)
T ss_pred             cCCceEEEEecCCce--eeEEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence            999999999999761  1111111 22245889999999999999999999998887653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-38  Score=265.41  Aligned_cols=307  Identities=18%  Similarity=0.201  Sum_probs=264.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC-CeEEEEEcCCCeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD-DTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~~~~~~~~~~   79 (343)
                      ||+|=..|...+|++..            +..++.+.-...+|..++|+  |+++|.|+.. |++.||+.++...+-..+
T Consensus       280 lvvgFssG~f~LyelP~------------f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ  347 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPD------------FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ  347 (893)
T ss_pred             EEEEecCCeeEEEecCC------------ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence            67888889999999987            67788887778899999999  9999998765 899999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| ...+++++++|++     +++++|+.||.|+|||...+-|..++..|+..|+.+.|+..++.+++.+.||+|+.||+
T Consensus       348 gH-~~~i~~l~YSpDg-----q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  348 GH-SDRITSLAYSPDG-----QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             cc-ccceeeEEECCCC-----cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            99 9999999999999     89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEEcCCc--ceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCc
Q 019326          160 VRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRS  233 (343)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~  233 (343)
                      ...+..+.+..+.+  ..+++..|.|..++++  ..-.|.+|++++|+.+..+. |.+||.+++|+ .+..|++++.|.+
T Consensus       422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence            99888777766654  5678889999999988  45579999999999999998 89999999998 4679999999999


Q ss_pred             EEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCC------------
Q 019326          234 ITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL------------  300 (343)
Q Consensus       234 i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------  300 (343)
                      |++||+-.. ..+.++.  +...+.+++|.|++.         .|+.+..||.|.+||++.......+            
T Consensus       502 VRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~---------elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~  570 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGK---------ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE  570 (893)
T ss_pred             EEEEEeeccCceeeeEe--eccceeEEEEcCCCC---------eEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence            999998644 3556666  888999999999998         9999999999999999876322110            


Q ss_pred             ----cccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          301 ----PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       301 ----~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                          ..........++.+++|.||.+++++...+.+...+.+
T Consensus       571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence                01111223468999999999999999988866554443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-39  Score=251.58  Aligned_cols=261  Identities=16%  Similarity=0.226  Sum_probs=237.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC-CeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST-SSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~   79 (343)
                      +++++.|++|++||..+            .+....++||.+.|..++|+  |.++++++.|-.+++||.++ .++++.+.
T Consensus       123 v~~as~d~tikv~D~~t------------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~  190 (406)
T KOG0295|consen  123 VVSASEDATIKVFDTET------------GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI  190 (406)
T ss_pred             EEEecCCceEEEEEccc------------hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc
Confidence            56777899999999988            44578889999999999999  99999999999999999987 57788888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| ...|.++.|.|.+     .++++++.|.+|+.|++.++.++.++.+|...|..++.+.||..+++++.|.++++|-+
T Consensus       191 gh-~h~vS~V~f~P~g-----d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  191 GH-EHGVSSVFFLPLG-----DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV  264 (406)
T ss_pred             Cc-ccceeeEEEEecC-----CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence            89 8999999999999     89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEE-EEcCCcceEEEEeCC---------------CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC
Q 019326          160 VRGRRSFY-HKIGKEASLIKFDGS---------------GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~  221 (343)
                      .++++... ..+..++.+++|.|.               ++++..+ .|+.|++||+.++.++.++. |...|..++|++
T Consensus       265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p  344 (406)
T KOG0295|consen  265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP  344 (406)
T ss_pred             ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence            99865443 345677888888652               2466666 89999999999999999988 888999999995


Q ss_pred             -CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          222 -NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       222 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                       |+||+++.+|+++++||+++++++..++ +|..-|+++.|+.+..         +++||+-|.++++|.-
T Consensus       345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p---------~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  345 GGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAP---------YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCc---------eEEeccccceeeeeec
Confidence             6799999999999999999999999999 9999999999999988         9999999999999974

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=246.66  Aligned_cols=302  Identities=17%  Similarity=0.154  Sum_probs=258.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++|+.|..-++|++.+            ......+.+|+..|+++.|+  |.+||||+.+|.|+||...++.....+..
T Consensus        79 ~aTGGgDD~AflW~~~~------------ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~  146 (399)
T KOG0296|consen   79 VATGGGDDLAFLWDIST------------GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ  146 (399)
T ss_pred             EEecCCCceEEEEEccC------------CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence            68999999999999988            23566778999999999999  99999999999999999999999888875


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      . -..|.=+.|+|..     ..|++|+.||.+.+|.+......+.+.+|..++++=.|.|+|+.++++..||+|++||+.
T Consensus       147 e-~~dieWl~WHp~a-----~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k  220 (399)
T KOG0296|consen  147 E-VEDIEWLKWHPRA-----HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK  220 (399)
T ss_pred             c-cCceEEEEecccc-----cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence            5 6788889999988     799999999999999999888889999999999999999999999999999999999999


Q ss_pred             CCceeEEEEc--CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC---------CcceEEeeec----CCCe
Q 019326          161 RGRRSFYHKI--GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG---------KKRILCAAPG----ENGV  224 (343)
Q Consensus       161 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~---------~~~i~~~~~~----~~~~  224 (343)
                      ++++......  .....++.++..+..++.+ .++.+.+.+..+++.+.....         ...+.|+.+.    .=.+
T Consensus       221 tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  221 TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL  300 (399)
T ss_pred             CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence            9998776653  3456778888888888888 888888888888887766552         2334444443    2358


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccc
Q 019326          225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAE  304 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  304 (343)
                      .++|+.||+|.|||+...+......  |..+|..+.|.+ ..         +|++++.||.|+.||.+++....    .-
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~---------~l~t~c~~g~v~~wDaRtG~l~~----~y  364 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TD---------YLLTACANGKVRQWDARTGQLKF----TY  364 (399)
T ss_pred             hhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cc---------hheeeccCceEEeeeccccceEE----EE
Confidence            8899999999999999887766666  999999999999 44         89999999999999999985221    12


Q ss_pred             cccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          305 AKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       305 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      ..+...|.+++.+|++++++..+.|+..++++.+
T Consensus       365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            2455679999999999999999999999888765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.5e-38  Score=253.04  Aligned_cols=302  Identities=22%  Similarity=0.284  Sum_probs=248.3

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      ||+++|+.|+.|-+|+-.+            ++-..+++.|..-|.|+.|+  |+++++++.||+|.+||-.+++.+..+
T Consensus       161 fRi~T~sdDn~v~ffeGPP------------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l  228 (603)
T KOG0318|consen  161 FRIATGSDDNTVAFFEGPP------------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL  228 (603)
T ss_pred             eEEEeccCCCeEEEeeCCC------------eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe
Confidence            6899999999999998544            55556778899999999999  999999999999999999999999999


Q ss_pred             c---cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce---------------------------------
Q 019326           79 H---HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL---------------------------------  122 (343)
Q Consensus        79 ~---~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------  122 (343)
                      .   +| .+.|.+|+|+|++     +.+++++.|.+++|||+.+.++                                 
T Consensus       229 ~~~~aH-kGsIfalsWsPDs-----~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  229 EDSDAH-KGSIFALSWSPDS-----TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cCCCCc-cccEEEEEECCCC-----ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            7   78 9999999999999     8999999999999999864433                                 


Q ss_pred             ----------eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE-------------------------
Q 019326          123 ----------LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY-------------------------  167 (343)
Q Consensus       123 ----------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------------------------  167 (343)
                                +..+.+|...|+++..+|++++|++|+.||.|.-|+..++..-..                         
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~  382 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGW  382 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEec
Confidence                      344557889999999999999999999999999999865431100                         


Q ss_pred             ------E-------------Ec--------------------------------------CCcceEEEEeCCCCEEEEE-
Q 019326          168 ------H-------------KI--------------------------------------GKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       168 ------~-------------~~--------------------------------------~~~~~~~~~~~~~~~~~~~-  189 (343)
                            .             ++                                      .-...+++++|++..++++ 
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG  462 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG  462 (603)
T ss_pred             CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence                  0             00                                      0112567889999999999 


Q ss_pred             eCCcEEEEEcccceeE---EEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          190 TEEKVGIHQAEDAKLL---CELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~---~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      .|+.+.+|.+......   ..+.|..+++++++++ +.+|++|...+.+.+||..+.+.......-|...|.+++|+|++
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            9999999999875533   4456999999999995 67999999999999999998887544443599999999999998


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      .         ++||||.|-.|.||+++.+.+-  +.+...+..+ |+.++|-.+..++..+ .|-..+
T Consensus       543 ~---------~vATGSlDt~Viiysv~kP~~~--i~iknAH~~g-Vn~v~wlde~tvvSsG-~Da~iK  597 (603)
T KOG0318|consen  543 K---------LVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGG-VNSVAWLDESTVVSSG-QDANIK  597 (603)
T ss_pred             e---------EEEeccccceEEEEEccChhhh--eEeccccccC-ceeEEEecCceEEecc-CcceeE
Confidence            8         9999999999999999987533  4444555555 9999998777665444 343333

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.4e-38  Score=252.90  Aligned_cols=308  Identities=16%  Similarity=0.217  Sum_probs=258.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecC----CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA----HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      |++|+.|-..++|++......  -.....++....+.+    ....|++|+|+  |+.||+|+.||.+++|+.. |.++.
T Consensus       194 lasg~~~s~ari~~l~e~~~~--~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~  270 (524)
T KOG0273|consen  194 LASGSGDSTARIWNLLENSNI--GSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLIS  270 (524)
T ss_pred             hhccCCccceeeeeehhhccc--cchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhh
Confidence            678888889999998640000  001111111111112    23579999999  9999999999999999976 77888


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      .+..| .++|.+|.|+..+     .+|++++.|+++.+||..+++..+.+..|..+-.++.|-.+ ..+++.+.|+.|++
T Consensus       271 tl~~H-kgPI~slKWnk~G-----~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V  343 (524)
T KOG0273|consen  271 TLGQH-KGPIFSLKWNKKG-----TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHV  343 (524)
T ss_pred             hhhcc-CCceEEEEEcCCC-----CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEE
Confidence            99999 9999999999999     89999999999999999999999999999988788888765 47899999999999


Q ss_pred             EEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC----------CC
Q 019326          157 VNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE----------NG  223 (343)
Q Consensus       157 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~----------~~  223 (343)
                      +.+....++..+ .+..+|.++.|+|.+.+|+++ .|+++++|..........+. |...|..+.|++          +.
T Consensus       344 ~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~  423 (524)
T KOG0273|consen  344 CKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL  423 (524)
T ss_pred             EEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCc
Confidence            999877766544 466899999999999999999 99999999998888888777 788888888872          23


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA  303 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  303 (343)
                      .+++++.|++|++||+..+.++..+. .|..+|.+++|+|++.         ++|+|+.||.|.+|+.++++     .+.
T Consensus       424 ~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~---------ylAsGs~dg~V~iws~~~~~-----l~~  488 (524)
T KOG0273|consen  424 MLASASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGR---------YLASGSLDGCVHIWSTKTGK-----LVK  488 (524)
T ss_pred             eEEEeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCc---------EEEecCCCCeeEeccccchh-----eeE
Confidence            78999999999999999999999998 8999999999999998         99999999999999999875     444


Q ss_pred             ccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          304 EAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       304 ~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      .+...+.|..++|+.++.++.....|+.+...
T Consensus       489 s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvl  520 (524)
T KOG0273|consen  489 SYQGTGGIFELCWNAAGDKLGACASDGSVCVL  520 (524)
T ss_pred             eecCCCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence            56666679999999999999998888876543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.8e-40  Score=253.72  Aligned_cols=256  Identities=18%  Similarity=0.264  Sum_probs=224.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .+++|..|++|+|||...            ......+.||++.|.|+.|....+++|+.|.+|++||+++++++..+-.|
T Consensus       209 kiVSGlrDnTikiWD~n~------------~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihH  276 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNS------------LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH  276 (499)
T ss_pred             hhhcccccCceEEecccc------------HHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhh
Confidence            478999999999999987            67778888999999999999999999999999999999999999999988


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc---eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV---LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                       ...|..+.|+.       .++++++.|.++.+||+....   +.+.+.+|...|+.+.|+.  +++++++.|.+|++|+
T Consensus       277 -ceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  277 -CEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWS  346 (499)
T ss_pred             -cceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEe
Confidence             99999999984       389999999999999996543   5567789999999999974  5999999999999999


Q ss_pred             ccCCceeEEEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEE
Q 019326          159 LVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSIT  235 (343)
Q Consensus       159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~  235 (343)
                      +.+++.+..... ...+.|+.+  .+++++++ +|.+|++||+..|.+++.++ |+.-|.|+.| +++.+++|+.||+|+
T Consensus       347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-d~krIVSGaYDGkik  423 (499)
T KOG0281|consen  347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIK  423 (499)
T ss_pred             ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-cCceeeeccccceEE
Confidence            999987766543 345555554  67888888 99999999999999999998 6777999999 778899999999999


Q ss_pred             EEECCCCce---------eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          236 AWDTNSGKV---------AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       236 i~d~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +||+..+..         +..+. .|++.|..+.|...           .+++++.|.+|.|||..++
T Consensus       424 vWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD~f-----------qIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  424 VWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFDEF-----------QIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             EEecccccCCcccccchHHHhhh-hccceeEEEeecce-----------EEEeccCCCeEEEEEcCCC
Confidence            999987643         23444 68999999999765           8999999999999999876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.7e-38  Score=265.19  Aligned_cols=248  Identities=18%  Similarity=0.259  Sum_probs=224.2

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-------------------------------eeeeEe
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-------------------------------SSLGAI   78 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-------------------------------~~~~~~   78 (343)
                      -.+..++......++|..|+  +.+||.|..|..|++|.+...                               .....+
T Consensus       368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L  447 (707)
T KOG0263|consen  368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL  447 (707)
T ss_pred             cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe
Confidence            34555555556789999999  778999999999999998721                               122346


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .+| .++|..+.|+|+.     ++|++++.|+++++|.+.+..++-.+++|..+|+.+.|+|.|-++++++.|++.++|.
T Consensus       448 ~GH-~GPVyg~sFsPd~-----rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  448 YGH-SGPVYGCSFSPDR-----RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             ecC-CCceeeeeecccc-----cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            788 9999999999999     8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcE
Q 019326          159 LVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSI  234 (343)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i  234 (343)
                      .....+.+.+. +-..+.|+.|+|+..+++++ .|.++++||..+|..++.+. |..+|.+++++ .+.+|++|+.||.|
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            98877766554 44889999999999999999 99999999999999999998 88999999999 57899999999999


Q ss_pred             EEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          235 TAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      .+||+.+++++..+. +|.+.|.+|.|+.++.         .||+|+.|.+|++||+....
T Consensus       602 ~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~---------vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLK-GHTGTIYSLSFSRDGN---------VLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EEEEcCCCcchhhhh-cccCceeEEEEecCCC---------EEEecCCCCeEEEEEchhhc
Confidence            999999999999999 9999999999999988         99999999999999997653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-37  Score=247.43  Aligned_cols=260  Identities=20%  Similarity=0.292  Sum_probs=234.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .||+|+.||.+++|+...             ..+.++..|++||.+|.|+  |++|++++.|+++.+||..++.....+.
T Consensus       249 ~LatG~~~G~~riw~~~G-------------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDG-------------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             eEEEeecCcEEEEEecCc-------------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            589999999999999875             4566777899999999999  9999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ..+-..+.|-.+.      .+++.+.|+.|+|+.+....++.++.+|.++|.++.|+|.+.+|++++.|+++++|..
T Consensus       316 ~~-s~~~lDVdW~~~~------~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  316 FH-SAPALDVDWQSND------EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             ec-cCCccceEEecCc------eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            88 7776889998776      8999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCCceeE-EEEcCCcceEEEEeCCC---------CEEEEE-eCCcEEEEEcccceeEEEe-cCCcceEEeeec-CCCeEE
Q 019326          160 VRGRRSF-YHKIGKEASLIKFDGSG---------EKFFMV-TEEKVGIHQAEDAKLLCEL-DGKKRILCAAPG-ENGVLF  226 (343)
Q Consensus       160 ~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~i~~~d~~~~~~~~~~-~~~~~i~~~~~~-~~~~l~  226 (343)
                      ....... ...+...|..+.|+|.+         ..++.+ .|+.+++||+..+.++..+ +|..+|.+++|+ ++.+++
T Consensus       389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence            7665443 44556788889998854         355666 9999999999999999999 599999999999 568999


Q ss_pred             EEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +|+.||.|.+|+.++++.++++.  -...|..++|+..++         .|..+-.|+.+++-|++
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~---------kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGD---------KLGACASDGSVCVLDLR  523 (524)
T ss_pred             ecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCC---------EEEEEecCCCceEEEec
Confidence            99999999999999999999998  566799999999987         89999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-37  Score=227.99  Aligned_cols=284  Identities=14%  Similarity=0.141  Sum_probs=234.1

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      +.+....+..|+++|..+.|+  |++.++++.|.+|++|+...+.+++++.+| ...|..++.+.++     ..|++|+.
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dn-----skf~s~Gg   79 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDN-----SKFASCGG   79 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeeccccccc-----cccccCCC
Confidence            345667778999999999999  999999999999999999999999999999 9999999999888     79999999


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc---CCcceEEEEeCCCCE
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI---GKEASLIKFDGSGEK  185 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~  185 (343)
                      |..+.+||+.+++.++.+++|.+.|+.+.|+.+...+++|+.|.++++||.++......+.+   ...+.++.+  .+..
T Consensus        80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~he  157 (307)
T KOG0316|consen   80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHE  157 (307)
T ss_pred             CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccE
Confidence            99999999999999999999999999999999999999999999999999998764443333   245555555  4567


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEE--EE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI--VV  261 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~--~~  261 (343)
                      ++++ .||+++.||++.++..... ...+|+|++|+ +++..++++.|+++++.|-.+|+.+..+. +|...-..+  ++
T Consensus       158 IvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l  235 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCL  235 (307)
T ss_pred             EEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeee
Confidence            7777 9999999999998876543 45789999999 57899999999999999999999999999 998765544  34


Q ss_pred             EecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          262 LTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      +....         .+++||+||.|++||+.........+   ....-.+..+++.|...-+..+.+.+...+..
T Consensus       236 ~qsdt---------hV~sgSEDG~Vy~wdLvd~~~~sk~~---~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  236 NQSDT---------HVFSGSEDGKVYFWDLVDETQISKLS---VVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             cccce---------eEEeccCCceEEEEEeccceeeeeec---cCCceeEEeeecccCccceeEecCCceeceee
Confidence            44444         99999999999999999864222111   12222378899999876555555555544433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-38  Score=255.80  Aligned_cols=263  Identities=16%  Similarity=0.212  Sum_probs=232.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.|+.|+||++..           ...+++++.+|..+|..++|+  |..|++++.|+.|++||+++|+++..+.
T Consensus       229 LlLS~gmD~~vklW~vy~-----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~  297 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYD-----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH  297 (503)
T ss_pred             EEEecCCCceEEEEEEec-----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe
Confidence            378999999999999976           257889999999999999999  9999999999999999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      ..  ..++|+.|+|++    ++.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++++++++.+.|+++++|+.
T Consensus       298 ~~--~~~~cvkf~pd~----~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~  371 (503)
T KOG0282|consen  298 LD--KVPTCVKFHPDN----QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN  371 (503)
T ss_pred             cC--CCceeeecCCCC----CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence            65  789999999998    479999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEEc--CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeE---EEec---CCcceEEeeec-CCCeEEEEe
Q 019326          160 VRGRRSFYHKI--GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL---CELD---GKKRILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       160 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~---~~~~---~~~~i~~~~~~-~~~~l~~~~  229 (343)
                      +....+.....  .....++..+|+++++++- .++.+.+|.+...-..   +.+.   -.+.-..+.|+ ++++|++|+
T Consensus       372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence            98876654443  3667889999999999998 8999999986542221   1222   23556677788 578999999


Q ss_pred             CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          230 EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       230 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      .||.+.+||.++-+.+..+. +|..++..+.|+|...+        .+||++.||.|++|+
T Consensus       452 sdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~S--------kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  452 SDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPS--------KVATCGWDGLIKIWD  503 (503)
T ss_pred             CCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcc--------eeEecccCceeEecC
Confidence            99999999999999999999 99999999999998774        799999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-36  Score=280.82  Aligned_cols=283  Identities=14%  Similarity=0.187  Sum_probs=234.6

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC----e----eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS----S----SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      +..|.+.|.+++|+  +++|++|+.|+.|++|+..+.    .    ....+..  ...+.+++|++..    +.+|++++
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~----~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYI----KSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCC----CCEEEEEe
Confidence            45699999999999  889999999999999997542    1    1223333  4689999999864    26899999


Q ss_pred             CCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEe-CCCCE
Q 019326          108 ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD-GSGEK  185 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~  185 (343)
                      .||+|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++++.|+.|++||++++..+........+.++.|+ +++..
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~  632 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRS  632 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCE
Confidence            999999999999999999999999999999997 6889999999999999999999887777777788899995 56889


Q ss_pred             EEEE-eCCcEEEEEcccce-eEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC------ceeEEecccccccE
Q 019326          186 FFMV-TEEKVGIHQAEDAK-LLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG------KVAYCIEDAHSARV  256 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~h~~~v  256 (343)
                      ++++ .|+.|++||+++.+ ....+. |...|.++.|.++.++++++.|+.|++||++.+      .++..+. +|...+
T Consensus       633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i  711 (793)
T PLN00181        633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVK  711 (793)
T ss_pred             EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCe
Confidence            9999 89999999998765 344444 788999999988889999999999999999743      5677888 999999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccC------CCcc---cccccccceeEEEcCCCCceecccc
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK------PLPL---AEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~---~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      ..+++++++.         +|++|+.|+.|++|+........      ..+.   ........|.+++|++++.+++++.
T Consensus       712 ~~v~~s~~~~---------~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        712 NFVGLSVSDG---------YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             eEEEEcCCCC---------EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            9999999887         99999999999999986542110      0001   0122345699999999999999999


Q ss_pred             CCCCCCCcc
Q 019326          328 GDSAPKGEE  336 (343)
Q Consensus       328 ~~~~~~~~~  336 (343)
                      .++.++.++
T Consensus       783 ~dG~I~i~~  791 (793)
T PLN00181        783 STGNIKILE  791 (793)
T ss_pred             CCCcEEEEe
Confidence            999887655

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-38  Score=249.78  Aligned_cols=275  Identities=16%  Similarity=0.241  Sum_probs=241.9

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      -+.+|..+.|.  |+.|++|+..|.+.+|+..+-.....++.| ..+|+++.|++++     .++++|+.+|.|++|+..
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaH-Ds~Vr~m~ws~~g-----~wmiSgD~gG~iKyWqpn  168 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAH-DSPVRTMKWSHNG-----TWMISGDKGGMIKYWQPN  168 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhh-cccceeEEEccCC-----CEEEEcCCCceEEecccc
Confidence            35689999999  899999999999999998766666667888 9999999999999     899999999999999986


Q ss_pred             Ccceeeeeeecc-ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE-EEcCCcceEEEEeCCCCEEEEE-eCCcEE
Q 019326          119 PFVLLTSVKVHK-KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY-HKIGKEASLIKFDGSGEKFFMV-TEEKVG  195 (343)
Q Consensus       119 ~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~  195 (343)
                      . ..+..+..|. ..|++++|+|+...+++++.||+|+|||....+.... ..++-.+.++.|+|....++++ .|+.|+
T Consensus       169 m-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVK  247 (464)
T KOG0284|consen  169 M-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK  247 (464)
T ss_pred             h-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeE
Confidence            5 4555666555 8999999999999999999999999999987765443 4455779999999999999999 888999


Q ss_pred             EEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          196 IHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      +||.+++.++.++. |...|..+.|. ++++|++++.|..+++||+++.+.+.+++ +|...|+++.|+|-..+      
T Consensus       248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~------  320 (464)
T KOG0284|consen  248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNES------  320 (464)
T ss_pred             eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeecccccccc------
Confidence            99999999999887 88899999998 56899999999999999999999999999 99999999999998764      


Q ss_pred             CeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          274 PYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                        +|.+|+.||.|..|.+...   .+.......+...|.+|+++|-|.+++.++.|...+-
T Consensus       321 --lftsgg~Dgsvvh~~v~~~---~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  321 --LFTSGGSDGSVVHWVVGLE---EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             --ceeeccCCCceEEEecccc---ccccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence              8999999999999999833   4445555667778999999999999999999986553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-36  Score=246.57  Aligned_cols=280  Identities=22%  Similarity=0.286  Sum_probs=243.2

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      ..+++|.++|++++|+  +++|++++.||.|++|++.+++....+..| ...+..+.|+|++     +++++++.+|.|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-----~~l~~~~~~~~i~   76 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADG-----TYLASGSSDKTIR   76 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCC-----CEEEEEcCCCeEE
Confidence            4566899999999999  689999999999999999998888888888 8889999999998     7999999999999


Q ss_pred             EEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEEe-C
Q 019326          114 IFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMVT-E  191 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~  191 (343)
                      +||+.+++.+..+..|...+.++.|+++++++++++.++.+.+||+++++...... +...+.++.++|++.+++++. +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence            99999888888899999999999999998888888889999999999877666555 456799999999999998884 9


Q ss_pred             CcEEEEEcccceeEEEec-CCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCC
Q 019326          192 EKVGIHQAEDAKLLCELD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGS  269 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  269 (343)
                      +.+.+||+++++....+. +...+.++.++++ +.+++++.++.|++||+++++.+..+. .|...+.++.+++++.   
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~---  232 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGY---  232 (289)
T ss_pred             CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCc---
Confidence            999999999888887776 5668999999854 488888889999999999999998887 7999999999999865   


Q ss_pred             CCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          270 TAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       270 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                            ++++++.||.|++||+.++.......    .+...|.++++++++.+++.+..++..+.+
T Consensus       233 ------~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         233 ------LLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             ------EEEEEcCCCcEEEEEcCCceeEEEcc----ccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence                  88888889999999998754322222    334579999999999999999988876544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.5e-37  Score=263.64  Aligned_cols=265  Identities=26%  Similarity=0.415  Sum_probs=231.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEc-CCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDL-STSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~   78 (343)
                      .|++++.++.+++|+...       .+.   .....+.+|...|.+++|+  +.++++++.|++|++||+ ..+..++.+
T Consensus       173 ~l~~~~~~~~i~~~~~~~-------~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l  242 (456)
T KOG0266|consen  173 ALAAASSDGLIRIWKLEG-------IKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL  242 (456)
T ss_pred             eEEEccCCCcEEEeeccc-------ccc---hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence            378899999999999965       111   2455557999999999999  889999999999999999 556899999


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .+| ...|++++|+|.+     +++++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||
T Consensus       243 ~gH-~~~v~~~~f~p~g-----~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  243 KGH-STYVTSVAFSPDG-----NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             cCC-CCceEEEEecCCC-----CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            999 9999999999999     8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCce--eEEEEcC--C-cceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEe---eec-CCCeEEE
Q 019326          159 LVRGRR--SFYHKIG--K-EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCA---APG-ENGVLFT  227 (343)
Q Consensus       159 ~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~---~~~-~~~~l~~  227 (343)
                      +.++..  .......  . .+..+.|+|++.+++++ .|+.+++||+..+.....+. |...+.|+   ..+ .+.++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s  396 (456)
T KOG0266|consen  317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS  396 (456)
T ss_pred             CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence            999983  2332222  2 57999999999999999 88899999999998888877 44433332   223 5789999


Q ss_pred             EeCCCcEEEEECCCCceeEEecccc-cccEEEEEEEecCCCCCCCCCCeEEEEEc--CCCcEEEEecc
Q 019326          228 GGEDRSITAWDTNSGKVAYCIEDAH-SARVKGIVVLTKNDGGSTAENPYLVASAS--SDGVICVWDVR  292 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~  292 (343)
                      |+.|+.|++||+.++..+..+. +| ...+..+.+++...         ++++++  .|+.+++|..+
T Consensus       397 g~~d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~---------~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  397 GSEDGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTEN---------LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCceEEEEeCCccchhhhhc-CCCCCceeccccCCCcC---------eeeecCcCCCceEEEecCC
Confidence            9999999999999999999999 99 89999999999987         899888  78999999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-35  Score=249.44  Aligned_cols=319  Identities=14%  Similarity=0.171  Sum_probs=263.6

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCC----------------Ccc-----e-eeEEeEEecCCCCCeEEEEec--CceEE
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSD----------------QKT-----L-TLTQLFSYPAHLSPITTVAVS--GTAAA   56 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~----------------~~~-----~-~~~~~~~~~~h~~~v~~l~~~--~~~l~   56 (343)
                      +.|++.+.||.+.+|.....++.+.+                ++.     . ......-+......|++.+|+  .+.|+
T Consensus       202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv  281 (893)
T KOG0291|consen  202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV  281 (893)
T ss_pred             ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence            46889999999999998743222111                111     1 111122233334789999999  67899


Q ss_pred             EeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-CeEEEEECCCcceeeeeeeccccEEE
Q 019326           57 SGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-GFVSIFDADPFVLLTSVKVHKKGVND  135 (343)
Q Consensus        57 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~  135 (343)
                      +|-..|...+|.+....+++.+.-. ..+|..++|+..|     ..|+.|+.. |.+.||+......+...++|...+++
T Consensus       282 vgFssG~f~LyelP~f~lih~LSis-~~~I~t~~~N~tG-----DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~  355 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPDFNLIHSLSIS-DQKILTVSFNSTG-----DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS  355 (893)
T ss_pred             EEecCCeeEEEecCCceEEEEeecc-cceeeEEEecccC-----CEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence            9999999999999999999999877 7899999999998     788887764 89999999988888888999999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcc
Q 019326          136 LAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKR  213 (343)
Q Consensus       136 i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~  213 (343)
                      ++++|||+++++|+.||.|++||...+-+...+. +...++.+.|+..++.++++ -||+++.||+...+..+++..+.+
T Consensus       356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence            9999999999999999999999999998877665 45789999999999999999 999999999999999999986665


Q ss_pred             e--EEeeecC-CCeEEEEeCCC-cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          214 I--LCAAPGE-NGVLFTGGEDR-SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       214 i--~~~~~~~-~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      +  .|++..+ +.++.+|+.|. .|++|++++|+.+-.+. +|.++|.+++|+|.+.         .|+|+|.|.+||+|
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~---------~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGS---------LLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccC---------eEEeccccceEEEE
Confidence            4  5666654 56777777665 49999999999999999 9999999999999998         99999999999999


Q ss_pred             eccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          290 DVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      |+-...    ...........+..++|+|+|+-++...-|+++--++..+
T Consensus       506 ~if~s~----~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  506 DIFSSS----GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             EeeccC----ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            997642    1233455666799999999999999999998766555443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.2e-37  Score=256.54  Aligned_cols=304  Identities=19%  Similarity=0.240  Sum_probs=263.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecC---ceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSG---TAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      ++++.+.|..+.+||.++            .+....+-|..+.|..|+|-|   ++|++++..+.+|+|++.+..+. .+
T Consensus       295 ~~l~vtaeQnl~l~d~~~------------l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii  361 (775)
T KOG0319|consen  295 QLLLVTAEQNLFLYDEDE------------LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-II  361 (775)
T ss_pred             ceEEEEccceEEEEEccc------------cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EE
Confidence            577888999999998876            677778889999999999985   89999999999999999887766 78


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCe
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDC  153 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~  153 (343)
                      .+| +..|.++.....+     .+|++|+.|.++++|.++.+    .++....+|...|.+++++..+ ..|++++.|.+
T Consensus       362 ~GH-~e~vlSL~~~~~g-----~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t  435 (775)
T KOG0319|consen  362 PGH-TEAVLSLDVWSSG-----DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT  435 (775)
T ss_pred             eCc-hhheeeeeecccC-----cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence            889 9999999955555     59999999999999987433    3566778999999999997765 78999999999


Q ss_pred             EEEEEccCCcee----------EEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC
Q 019326          154 LAMVNLVRGRRS----------FYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       154 i~~wd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~  221 (343)
                      +++|++...+..          ....+...|++++++|+...++++ .|.+.++|+++.......+. |...+.|+.|++
T Consensus       436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~  515 (775)
T KOG0319|consen  436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK  515 (775)
T ss_pred             EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence            999999873211          112356889999999999999999 99999999999999999998 888999999995


Q ss_pred             -CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCC
Q 019326          222 -NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL  300 (343)
Q Consensus       222 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  300 (343)
                       +..++++|.|++|+||.+.+..+++++. +|...|....|..++.         .|+|++.||.|++|++++..+....
T Consensus       516 ~dq~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~---------qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  516 NDQLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGK---------QLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             ccceeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCc---------EEEeccCCCcEEEEeccchhhhhhh
Confidence             5799999999999999999999999999 9999999999999988         9999999999999999998655433


Q ss_pred             cccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          301 PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       301 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      .    .+..+|.+++.++...+.+.+.+|+.+..+++.
T Consensus       586 D----~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  586 D----AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             h----hccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            2    456789999999999999999999977655543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.5e-37  Score=259.21  Aligned_cols=234  Identities=18%  Similarity=0.202  Sum_probs=207.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCC-------------------CcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSD-------------------QKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD   61 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~-------------------~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d   61 (343)
                      ||.|..|..|++|.+.+.+..+.+                   ..........++.||.+||..+.|+  .++|++++.|
T Consensus       393 lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED  472 (707)
T KOG0263|consen  393 LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSED  472 (707)
T ss_pred             hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCC
Confidence            678889999999999853211100                   0001112234578999999999999  7899999999


Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS  141 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  141 (343)
                      +++|+|.+.+..++-.+++| ..+|+.+.|+|.|     -+|++++.|++.++|..+..++.+.+.+|.+.|.|+.|+|+
T Consensus       473 ~svRLWsl~t~s~~V~y~GH-~~PVwdV~F~P~G-----yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN  546 (707)
T KOG0263|consen  473 SSVRLWSLDTWSCLVIYKGH-LAPVWDVQFAPRG-----YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN  546 (707)
T ss_pred             cceeeeecccceeEEEecCC-CcceeeEEecCCc-----eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc
Confidence            99999999999999999999 9999999999999     79999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEee
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAA  218 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~  218 (343)
                      ..++++|+.|.++++||+.+|..++.+. +..+|.+++|+|+|++++++ .++.|.+||+.+++.+..+. |.+.|.++.
T Consensus       547 s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  547 SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence            9999999999999999999999887765 45889999999999999999 99999999999999988877 888999999


Q ss_pred             ec-CCCeEEEEeCCCcEEEEECCCC
Q 019326          219 PG-ENGVLFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       219 ~~-~~~~l~~~~~dg~i~i~d~~~~  242 (343)
                      |+ +++.|++|+.|.+|++||+...
T Consensus       627 FS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  627 FSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EecCCCEEEecCCCCeEEEEEchhh
Confidence            99 7889999999999999998643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-35  Score=221.00  Aligned_cols=284  Identities=18%  Similarity=0.213  Sum_probs=231.7

Q ss_pred             eEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC---CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEE
Q 019326           32 LTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST---SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFS  105 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s  105 (343)
                      +..++.+++|.+.+..++|+   |..||+|+.|..||+|+...   -.+...+...|+..|.+++|+|.+     ++|++
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-----~~La~   78 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-----RYLAS   78 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-----cEEEE
Confidence            45567788999999999999   34899999999999999985   345555544339999999999999     89999


Q ss_pred             eeCCCeEEEEECC--CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee----EEEEcCCcceEEEE
Q 019326          106 TSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS----FYHKIGKEASLIKF  179 (343)
Q Consensus       106 ~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~  179 (343)
                      |+.|.++.||.-.  ..+++.++.+|...|.+++|+++|++|++++.|+.|-+|.+..+...    ....+.+.|..+.|
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            9999999999874  46789999999999999999999999999999999999999865432    23456688999999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEcc---cceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccc
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAE---DAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS  253 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~---~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~  253 (343)
                      +|...+|+++ .|++|++|+-.   .-.+.+++. |...|.+++|++ +..|++++.|++++||-..     ..+...|+
T Consensus       159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~s  233 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHS  233 (312)
T ss_pred             cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcc
Confidence            9999999999 99999999876   335677777 667999999995 6799999999999999865     33444588


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc---cccccccceeEEEcCCC-CceeccccCC
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL---AEAKTNSRLTCLAGSST-KSFKRPQIGD  329 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~-~~~~~~~~~~  329 (343)
                      .++..+.|. ++          .|+|++.|+.|++|.-..........+   ....+...|+++.|.|. ..+++++..|
T Consensus       234 r~~Y~v~W~-~~----------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  234 RALYDVPWD-NG----------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             cceEeeeec-cc----------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence            999999998 43          899999999999998775321111111   11233447999999995 6788888888


Q ss_pred             CCCCCcc
Q 019326          330 SAPKGEE  336 (343)
Q Consensus       330 ~~~~~~~  336 (343)
                      +.++..+
T Consensus       303 G~v~~W~  309 (312)
T KOG0645|consen  303 GIVNFWE  309 (312)
T ss_pred             ceEEEEE
Confidence            8776554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.9e-38  Score=243.88  Aligned_cols=271  Identities=20%  Similarity=0.320  Sum_probs=228.4

Q ss_pred             CCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           41 HLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        41 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ....|.|+.++.+.+++|..|.+|+|||..+..+...+.+| ++.|.|+.|..       +.+++|+.|.+|++||.+++
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd~-------rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYDE-------RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeeccc-------eEEEecCCCceEEEEeccCC
Confidence            45789999999999999999999999999999999999999 99999999964       58999999999999999999


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE----EEEcCCcceEEEEeCCCCEEEEE-eCCcEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF----YHKIGKEASLIKFDGSGEKFFMV-TEEKVG  195 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~  195 (343)
                      +++.++-.|...|..+.|+..  ++++++.|.++.+||+.....+.    ...+...++.+.|+  .++++++ +|.+|+
T Consensus       268 e~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik  343 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK  343 (499)
T ss_pred             chhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence            999999999999999999854  99999999999999997665221    22334567777775  4599999 999999


Q ss_pred             EEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCC
Q 019326          196 IHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  274 (343)
                      +|++.+++.++.+. |...|.|+.+ .++++++|+.|.+|++||+..|.++..++ +|..-|.++.|...          
T Consensus       344 vW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd~k----------  411 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNK----------  411 (499)
T ss_pred             EEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeecCc----------
Confidence            99999999999998 7788888888 78999999999999999999999999999 99999999999765          


Q ss_pred             eEEEEEcCCCcEEEEeccCccccC----CCc-ccccccccceeEEE--------cCCCCceeccccCCCCCCCcc
Q 019326          275 YLVASASSDGVICVWDVRMAIKEK----PLP-LAEAKTNSRLTCLA--------GSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       275 ~~l~s~~~dg~i~vwd~~~~~~~~----~~~-~~~~~~~~~i~~~~--------~s~~~~~~~~~~~~~~~~~~~  336 (343)
                       .+++|+.||+|+|||+.++....    ... .....+.++|..+.        .+-+...++|..-++.+-..+
T Consensus       412 -rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~~  485 (499)
T KOG0281|consen  412 -RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAAE  485 (499)
T ss_pred             -eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCccccc
Confidence             79999999999999999874221    111 12224445665554        466788888888877655433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.2e-36  Score=227.97  Aligned_cols=262  Identities=17%  Similarity=0.252  Sum_probs=227.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|..|.+|++..           ..+-...+++|.++|..+.|.  ++.+++++.|.+|+.||.++|+.++.++
T Consensus        61 ~~aSgG~Dr~I~LWnv~g-----------dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   61 CFASGGSDRAIVLWNVYG-----------DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             eEeecCCcceEEEEeccc-----------cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            489999999999999764           144556677999999999998  8999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ..-|+++.-+.-+    +.++.+++.|+++++||+++...++++. .+-+++++.|..++..+++|+-|+.|++||+
T Consensus       130 ~h-~~~vNs~~p~rrg----~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  130 GH-TSFVNSLDPSRRG----PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDL  203 (338)
T ss_pred             cc-cceeeecCccccC----CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeecc
Confidence            99 9999999866555    4788899999999999999988888775 4668999999999999999999999999999


Q ss_pred             cCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc----eeEEEec---CC--cceEEeeecC-CCeEEE
Q 019326          160 VRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA----KLLCELD---GK--KRILCAAPGE-NGVLFT  227 (343)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~----~~~~~~~---~~--~~i~~~~~~~-~~~l~~  227 (343)
                      +.+....... +...|..+..+++|.++.+- .|..+++||++..    +++..+.   |.  .....++|++ +..+.+
T Consensus       204 r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~a  283 (338)
T KOG0265|consen  204 RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITA  283 (338)
T ss_pred             ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccc
Confidence            9988776655 45889999999999999998 9999999999853    3355554   33  3345566664 578889


Q ss_pred             EeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          228 GGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      |+.|..+++||......+..++ +|.+.|++++|+|..+         +|.+++.|.+|++=.
T Consensus       284 gs~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~---------iils~~sdk~i~lge  336 (338)
T KOG0265|consen  284 GSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHPTEP---------IILSCSSDKTIYLGE  336 (338)
T ss_pred             ccccceEEEeecccccEEEEcC-CcceeEEEeeecCCCc---------EEEEeccCceeEeec
Confidence            9999999999999999999999 9999999999999998         999999999998743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.7e-36  Score=234.37  Aligned_cols=260  Identities=18%  Similarity=0.251  Sum_probs=227.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-----CceEEEeeCCCeEEEEEcCCCee---
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-----GTAAASGGTDDTIHLYDLSTSSS---   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~~~dg~i~iwd~~~~~~---   74 (343)
                      |++|++||.+++||...             +..+.+.||.++|.+++|.     ...|++++.|.++++|..+.++.   
T Consensus       118 IltgsYDg~~riWd~~G-------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~  184 (423)
T KOG0313|consen  118 ILTGSYDGTSRIWDLKG-------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK  184 (423)
T ss_pred             EEEeecCCeeEEEecCC-------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh
Confidence            78999999999999875             5667778999999999986     34599999999999999887743   


Q ss_pred             -eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-------------------------Ccceeeeeee
Q 019326           75 -LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-------------------------PFVLLTSVKV  128 (343)
Q Consensus        75 -~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------------------~~~~~~~~~~  128 (343)
                       +..-.+| ...|-+++..+++     ..+++|+.|.+|.+|+..                         ++.++.++.+
T Consensus       185 ~~~~~~GH-k~~V~sVsv~~sg-----tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  185 ALKVCRGH-KRSVDSVSVDSSG-----TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             HHhHhccc-ccceeEEEecCCC-----CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence             2333588 9999999999999     899999999999999931                         1245677889


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccce---e
Q 019326          129 HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK---L  204 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~---~  204 (343)
                      |..+|.++.|++ ...+++++.|.+|+.||+.++........+....++..+|...+++++ .|..+++||.+++.   .
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            999999999998 668999999999999999999999999999999999999999999999 99999999999764   2


Q ss_pred             EEEec-CCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCc-eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          205 LCELD-GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       205 ~~~~~-~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ..++. |..-|.++.|++  ...|++|+.|+++++||+++.+ ++..+. +|...|.++.|....          .+++|
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~~~~----------~IvSG  406 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWNEGG----------LIVSG  406 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEeccCCc----------eEEec
Confidence            23333 888999999995  4589999999999999999887 999999 999999999998776          89999


Q ss_pred             cCCCcEEEEeccC
Q 019326          281 SSDGVICVWDVRM  293 (343)
Q Consensus       281 ~~dg~i~vwd~~~  293 (343)
                      |.|.+|+|+.-..
T Consensus       407 GaD~~l~i~~~~~  419 (423)
T KOG0313|consen  407 GADNKLRIFKGSP  419 (423)
T ss_pred             cCcceEEEecccc
Confidence            9999999997653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-35  Score=220.65  Aligned_cols=265  Identities=18%  Similarity=0.261  Sum_probs=218.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC--eeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS--SSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~   77 (343)
                      -|++++.|+.|++|++..       +..+.++.+.. .+|+..|.+++|+  |++|++|+.|.++.||.-..+  +++..
T Consensus        29 ilAscg~Dk~vriw~~~~-------~~s~~ck~vld-~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~  100 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSS-------GDSWTCKTVLD-DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT  100 (312)
T ss_pred             EEEeecCCceEEEEecCC-------CCcEEEEEecc-ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee
Confidence            489999999999999985       23344443333 3799999999997  999999999999999987654  67889


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC---CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD---PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      +.+| ...|.|++|++++     ++|++++.|..|-||.+.   ..++...++.|...|..+.|+|...+|++++.|++|
T Consensus       101 lEGH-EnEVK~Vaws~sG-----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI  174 (312)
T KOG0645|consen  101 LEGH-ENEVKCVAWSASG-----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI  174 (312)
T ss_pred             eecc-ccceeEEEEcCCC-----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence            9999 9999999999999     899999999999999985   456888999999999999999999999999999999


Q ss_pred             EEEEcc-CCc--eeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEe
Q 019326          155 AMVNLV-RGR--RSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGG  229 (343)
Q Consensus       155 ~~wd~~-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~  229 (343)
                      ++|+-. ...  +...+. +...+.+++|++.|..++++ .|+.++||.....   ....|..++..+.|. +..+++++
T Consensus       175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~g  250 (312)
T KOG0645|consen  175 KVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGG  250 (312)
T ss_pred             EEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-ccceEecc
Confidence            999877 332  233332 33578999999999999999 9999999986521   112266788889996 78999999


Q ss_pred             CCCcEEEEECCCC------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          230 EDRSITAWDTNSG------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       230 ~dg~i~i~d~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      .|+.|++|.....      +.+......|...|++++|.|...+        +|++++.||.|++|.+.
T Consensus       251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~--------~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN--------RLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC--------ceeecCCCceEEEEEec
Confidence            9999999976542      2333344589999999999995332        89999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.2e-35  Score=240.09  Aligned_cols=261  Identities=28%  Similarity=0.396  Sum_probs=230.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.||.|++|++..            ......+..|...+..+.|.  ++.+++++.||.|++|++.+++.+..+.
T Consensus        23 ~l~~~~~~g~i~i~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~   90 (289)
T cd00200          23 LLATGSGDGTIKVWDLET------------GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT   90 (289)
T ss_pred             EEEEeecCcEEEEEEeeC------------CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence            478888899999999986            22455667899999999998  6699999999999999999988888888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...+.++.|++++     +++++++.++.|.+||+.+++....+..|...+.+++|+|++.++++++.++.|++||+
T Consensus        91 ~~-~~~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~  164 (289)
T cd00200          91 GH-TSYVSSVAFSPDG-----RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL  164 (289)
T ss_pred             cc-CCcEEEEEEcCCC-----CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence            88 7899999999987     68888888999999999988888889889999999999999888888888999999999


Q ss_pred             cCCceeEEEEcC-CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe-cCCcceEEeeecC-CCeEEEEeCCCcEE
Q 019326          160 VRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL-DGKKRILCAAPGE-NGVLFTGGEDRSIT  235 (343)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~-~~~~~i~~~~~~~-~~~l~~~~~dg~i~  235 (343)
                      ++++........ ..+.++.|+|+++.++++ .++.+.+||++.++....+ .+...+.++.+++ +.++++++.+|.|+
T Consensus       165 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  244 (289)
T cd00200         165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR  244 (289)
T ss_pred             cccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence            987766655543 579999999999888888 8999999999999988888 5778999999986 45666777799999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +||+.+++....+. .|...|.+++|++++.         +|++++.||.|++|+
T Consensus       245 i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~iw~  289 (289)
T cd00200         245 VWDLRTGECVQTLS-GHTNSVTSLAWSPDGK---------RLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCceeEEEcc-ccCCcEEEEEECCCCC---------EEEEecCCCeEEecC
Confidence            99999999999998 8999999999999876         999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-36  Score=240.05  Aligned_cols=269  Identities=20%  Similarity=0.241  Sum_probs=233.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .||+++.|.+..+|++..       ..  .++..+++.+|..+|..+.|+  .++|++++.|..+.+||+.+|.+...+.
T Consensus       238 yLAsaSkD~Taiiw~v~~-------d~--~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~  308 (519)
T KOG0293|consen  238 YLASASKDSTAIIWIVVY-------DV--HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP  308 (519)
T ss_pred             eEeeccCCceEEEEEEec-------Cc--ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence            489999999999999976       22  267788999999999999999  7899999999999999999999888775


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc-ccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK-KGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ..+...+.+++|.|++     ..+++|+.|+++..||++. .....+++-. ..|.+++..+||+++++.+.|..|++++
T Consensus       309 ~~~~~S~~sc~W~pDg-----~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~  382 (519)
T KOG0293|consen  309 SGLGFSVSSCAWCPDG-----FRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN  382 (519)
T ss_pred             cCcCCCcceeEEccCC-----ceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence            4336889999999999     7999999999999999976 3455555433 4699999999999999999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC---cceEEeeec--CCCeEEEEeCCC
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK---KRILCAAPG--ENGVLFTGGEDR  232 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~--~~~~l~~~~~dg  232 (343)
                      .++...........++..++++.+++++++. .+..+.+||++..+.++++.+.   .-+..-+|.  +..++++|++|+
T Consensus       383 ~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~  462 (519)
T KOG0293|consen  383 REARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS  462 (519)
T ss_pred             hhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence            9887777677788999999999999999999 9999999999988888777632   234444554  457999999999


Q ss_pred             cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          233 SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .|+||+..+++++..+. +|...|++++|+|..+        .++|++|.||+||||.....
T Consensus       463 kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p--------~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  463 KVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADP--------EMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eEEEEEccCCceeEeec-CCcceeeEEecCCCCH--------HHhhccCCCCeEEEecCCcc
Confidence            99999999999999999 9999999999998865        48999999999999988753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-36  Score=228.01  Aligned_cols=284  Identities=16%  Similarity=0.195  Sum_probs=241.5

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC-CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST-SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      ..++..+.+|.+.|+.+.|+  |..||+|+.|..|.+|++.. .+-...+++| .++|..+.|.+++     +.+++++.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH-sgAVM~l~~~~d~-----s~i~S~gt  110 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGH-SGAVMELHGMRDG-----SHILSCGT  110 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccc-cceeEeeeeccCC-----CEEEEecC
Confidence            45667778999999999999  89999999999999999653 4556778899 9999999999999     89999999


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      |.+|+.||.++++.++.+++|...|++++-..-| .++.+++.|+++++||+++...+..+..+.++.++.|...+..+.
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence            9999999999999999999999999999855445 567788889999999999998888888889999999999999999


Q ss_pred             EE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC----ceeEEecccccc----cE
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG----KVAYCIEDAHSA----RV  256 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~h~~----~v  256 (343)
                      ++ -|+.|++||++.......+. |..+|+.+..+ .+.++.+-+.|.++++||++..    .++..+. +|..    ..
T Consensus       191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~~hnfeknl  269 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHNFEKNL  269 (338)
T ss_pred             eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee-cchhhhhhhc
Confidence            99 99999999999999999988 88999999998 5779999999999999999754    2355555 4432    33


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      ...+|+|++.         .+.+|+.|..+++||.......    +.-..+.+.|++++|+|...++.....|+.+..-
T Consensus       270 L~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~l----yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  270 LKCSWSPNGT---------KITAGSADRFVYVWDTTSRRIL----YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             ceeeccCCCC---------ccccccccceEEEeecccccEE----EEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            4556777666         9999999999999999874322    2222445569999999999999999998876543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-37  Score=228.34  Aligned_cols=266  Identities=19%  Similarity=0.234  Sum_probs=237.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.|+.=.+-+-++            ..-+.+|.||++.|.+...+  ....|+++.|-+-++||.-+|..+..|.
T Consensus        31 flisa~kd~~pmlr~g~t------------gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~   98 (334)
T KOG0278|consen   31 FLISASKDGKPMLRNGDT------------GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE   98 (334)
T ss_pred             EEEEeccCCCchhccCCC------------CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence            466666666655544433            44577889999999999998  4567889999999999999999999887


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                       | ..-|.+++|+.+.     ++|++|+.+..++|||++.. .+...+.+|.+.|..+.|....+.+++.+.|++|++||
T Consensus        99 -h-khivk~~af~~ds-----~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   99 -H-KHIVKAVAFSQDS-----NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD  171 (334)
T ss_pred             -h-hheeeeEEecccc-----hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence             4 5889999999998     89999999999999999654 46778899999999999999999999999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCC-CeEEEEeCCCcEEEE
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN-GVLFTGGEDRSITAW  237 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~  237 (343)
                      .+++..+.....+.++.++.++++|+++.++..+.|..||..+..+++.++.+..|.+...+|. +.+++|+.|..++.|
T Consensus       172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kf  251 (334)
T KOG0278|consen  172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKF  251 (334)
T ss_pred             eccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999864 688999999999999


Q ss_pred             ECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       238 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      |..+++.+..+..+|.++|.++.|+|++.         ..++||.||+|++|....++
T Consensus       252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE---------~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGE---------LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eccCCceeeecccCCCCceEEEEECCCCc---------eeeccCCCceEEEEEecCCC
Confidence            99999999887449999999999999998         99999999999999987653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-36  Score=252.23  Aligned_cols=264  Identities=20%  Similarity=0.250  Sum_probs=229.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEE-ec-CceEEEeeCCCeEEEEEcCCC----eee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVA-VS-GTAAASGGTDDTIHLYDLSTS----SSL   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~-~~~l~s~~~dg~i~iwd~~~~----~~~   75 (343)
                      .|++++..+.+|+|+..+.            . .+.+.||+..|.++. |+ |.+|+||+.|.++++|.++++    .++
T Consensus       338 ~laVATNs~~lr~y~~~~~------------~-c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~  404 (775)
T KOG0319|consen  338 HLAVATNSPELRLYTLPTS------------Y-CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV  404 (775)
T ss_pred             eEEEEeCCCceEEEecCCC------------c-eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh
Confidence            4789999999999987761            1 226789999999999 55 779999999999999988544    345


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-----ee----eeeeeccccEEEEEEecCCCEEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-----LL----TSVKVHKKGVNDLAVHHSGKLAL  146 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~----~~~~~~~~~v~~i~~~~~~~~l~  146 (343)
                      ....+| ...|.+++++..+    ..+|++++.|+++++|++...+     .+    .....|...|++++.+|+.+.++
T Consensus       405 a~~~gH-~~svgava~~~~~----asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA  479 (775)
T KOG0319|consen  405 AQANGH-TNSVGAVAGSKLG----ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA  479 (775)
T ss_pred             hhhccc-ccccceeeecccC----ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence            566788 9999999998776    5899999999999999996521     11    12346999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CC
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-EN  222 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~  222 (343)
                      ||+.|++.++|+++..+..... .+...+.++.|+|..+.++++ .|.+|+||.+.++.+++++. |...|..+.|- ++
T Consensus       480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence            9999999999999977765544 455789999999999999999 99999999999999999999 88999999887 67


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       223 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ..|++++.||-|++|++++++++.++. +|...|+++..++...         +++||+.||.|.+|.=.+
T Consensus       560 ~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~---------~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLD---------MFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccc---------eeEecCCCeEEEEeecCc
Confidence            899999999999999999999999999 9999999999999987         999999999999995444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-36  Score=247.59  Aligned_cols=276  Identities=15%  Similarity=0.239  Sum_probs=242.1

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      .++..|...|.++.++  ...++++-..|.|.|||.++...++.+.-. .-+|.+..|.+..     +.+++|+.|..|+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~-~~PvRa~kfiaRk-----nWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-EVPVRAAKFIARK-----NWIVTGSDDMQIR   80 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-ccchhhheeeecc-----ceEEEecCCceEE
Confidence            3445689999999999  678999999999999999999999999988 8999999999888     8999999999999


Q ss_pred             EEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eeE-EEEcCCcceEEEEeCCC-CEEEEE-
Q 019326          114 IFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-RSF-YHKIGKEASLIKFDGSG-EKFFMV-  189 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~~~~-  189 (343)
                      +|+..+++.+..|..|.+.|.+++.+|...++++++.|-+|++||.+.+= +.. ...+.+-|..++|.|.. +.++++ 
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            99999999999999999999999999999999999999999999997653 222 23355779999999954 567777 


Q ss_pred             eCCcEEEEEcccceeEEEec-CCcceEEeeecCCC---eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          190 TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENG---VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      -|++|++|.+....+..++. |...|+|+++-++.   +|++|++|..|++||.++..+++++. +|..-|+.+.|+|.-
T Consensus       161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~l  239 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPEL  239 (794)
T ss_pred             ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCC
Confidence            89999999999999888888 88999999998544   99999999999999999999999999 999999999999998


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCC
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSA  331 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~  331 (343)
                      +         +++|||+||++|||+-.+-+.+....    ...+++.|++..+....++.|...+.
T Consensus       240 p---------iiisgsEDGTvriWhs~Ty~lE~tLn----~gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  240 P---------IIISGSEDGTVRIWNSKTYKLEKTLN----YGLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             c---------EEEEecCCccEEEecCcceehhhhhh----cCCceEEEEeecCCCCeEEEeccCCc
Confidence            8         99999999999999998865433222    22457999998887777777777664

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.8e-34  Score=233.80  Aligned_cols=300  Identities=18%  Similarity=0.230  Sum_probs=252.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC--CCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT--DDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~--dg~i~iwd~~~~~~~~~   77 (343)
                      -+++|...|.|||||....          +.....+++.-.++|..++|+  +.++++.++  +...+++-.++|..+.+
T Consensus        73 yiASGD~sG~vRIWdtt~~----------~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe  142 (603)
T KOG0318|consen   73 YIASGDVSGKVRIWDTTQK----------EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE  142 (603)
T ss_pred             EEeecCCcCcEEEEeccCc----------ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccce
Confidence            3688889999999998751          234445555667899999999  666666554  33445555567888999


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      +.+| ...|+++.|-|..    |-++++|+.|++|.+|+-...+...+++.|..-|.++.|+|||..+++++.||++.+|
T Consensus       143 i~Gh-Sr~ins~~~KpsR----PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy  217 (603)
T KOG0318|consen  143 ITGH-SRRINSVDFKPSR----PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY  217 (603)
T ss_pred             eecc-ceeEeeeeccCCC----ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence            9999 9999999999987    5799999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCceeEEEE----cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcc----eEEeeecCCCeEEEE
Q 019326          158 NLVRGRRSFYHK----IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKR----ILCAAPGENGVLFTG  228 (343)
Q Consensus       158 d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~----i~~~~~~~~~~l~~~  228 (343)
                      |-.+++.+..+.    +.+.|..++|+||+..++++ .|..+++||+.+.++++++.....    ...+.| .+..|++-
T Consensus       218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW-qkd~lItV  296 (603)
T KOG0318|consen  218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW-QKDHLITV  296 (603)
T ss_pred             cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE-eCCeEEEE
Confidence            999999888776    56789999999999999999 999999999999999999984433    233344 47789999


Q ss_pred             eCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccc
Q 019326          229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTN  308 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  308 (343)
                      +.+|.|.+++...+.++..+. +|...|+++..++++.         +|++|+.||.|.-|+..++...   ++....+.
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~---------~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~  363 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGK---------TIYSGSYDGHINSWDSGSGTSD---RLAGKGHT  363 (603)
T ss_pred             EcCcEEEEecccCCChhheec-ccccceeEEEEcCCCC---------EEEeeccCceEEEEecCCcccc---cccccccc
Confidence            999999999999999999999 9999999999999987         9999999999999999988533   23233455


Q ss_pred             cceeEEEcCCCCceeccccCCC
Q 019326          309 SRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       309 ~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ..|.+++.+..+.+...+..|.
T Consensus       364 nqI~~~~~~~~~~~~t~g~Dd~  385 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGWDDT  385 (603)
T ss_pred             ceEEEEeecCCCcEEEEecCCe
Confidence            5699999888777666665544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.9e-35  Score=245.94  Aligned_cols=308  Identities=18%  Similarity=0.263  Sum_probs=256.9

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCC
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSS   85 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~   85 (343)
                      -.++.+..|.++.....+   +.........+.||...|.+++++ .+.++..+..+.+++|+.++.++++++..   ..
T Consensus       341 l~nNtv~~ysl~~s~~~~---p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~y  414 (888)
T KOG0306|consen  341 LANNTVEWYSLENSGKTS---PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---GY  414 (888)
T ss_pred             eecCceEEEEeccCCCCC---ccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---cc
Confidence            567788888887622111   111122334567999999999999 55555555568899999999999999974   48


Q ss_pred             eEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC----
Q 019326           86 VTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR----  161 (343)
Q Consensus        86 v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~----  161 (343)
                      +.+..|.|.+     +++++|...|.+.+||+.....+.+++.|.+.|++++.+||+..+++|+.|.+|++||..-    
T Consensus       415 ~l~~~Fvpgd-----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~  489 (888)
T KOG0306|consen  415 ILASKFVPGD-----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV  489 (888)
T ss_pred             EEEEEecCCC-----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence            8999999998     8999999999999999999999999999999999999999999999999999999999742    


Q ss_pred             -Cc--------eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEe
Q 019326          162 -GR--------RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       162 -~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~  229 (343)
                       +.        ......+...+.++.++|++++++++ -|+++++|-+.+.+..-.+- |.-||.|+..+ +++++++|+
T Consensus       490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS  569 (888)
T KOG0306|consen  490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS  569 (888)
T ss_pred             CcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence             11        12345667899999999999999999 99999999999988766654 88999999999 568999999


Q ss_pred             CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccccc
Q 019326          230 EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNS  309 (343)
Q Consensus       230 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  309 (343)
                      .|..|++|-+.-|.+-+.+- +|...|.++.|.|...         ++.|+|.|+.|+-||-..-...+..   . .+..
T Consensus       570 ADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~---------~FFt~gKD~kvKqWDg~kFe~iq~L---~-~H~~  635 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTH---------LFFTCGKDGKVKQWDGEKFEEIQKL---D-GHHS  635 (888)
T ss_pred             CCCceEEeccccchhhhhhh-cccCceeEEEEcccce---------eEEEecCcceEEeechhhhhhheee---c-cchh
Confidence            99999999999999999999 9999999999999876         9999999999999998865432222   2 3445


Q ss_pred             ceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          310 RLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       310 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      .|.|++.+|+|.|+++++.|..++.++..+
T Consensus       636 ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  636 EVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            699999999999999999988776665543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.9e-35  Score=251.13  Aligned_cols=286  Identities=22%  Similarity=0.273  Sum_probs=238.2

Q ss_pred             eEEecCC-CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           35 LFSYPAH-LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        35 ~~~~~~h-~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ...+.+| ...|+++.|+  |+.+++++.|+.+++|+..+.+  ....+.+| ...|.+++|+|++     +++++++.|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h-~~~v~~~~fs~d~-----~~l~s~s~D  224 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGH-TRGVSDVAFSPDG-----SYLLSGSDD  224 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccc-ccceeeeEECCCC-----cEEEEecCC
Confidence            4444444 7889999999  8899999999999999998877  77777888 9999999999999     899999999


Q ss_pred             CeEEEEEC-CCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEE
Q 019326          110 GFVSIFDA-DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFF  187 (343)
Q Consensus       110 g~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (343)
                      ++|++||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||++++++...... ...+..++|++++.+++
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence            99999999 66689999999999999999999999999999999999999999888776654 57899999999999999


Q ss_pred             EE-eCCcEEEEEcccce--eEEEec-CCc--ceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEE
Q 019326          188 MV-TEEKVGIHQAEDAK--LLCELD-GKK--RILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~--~~~~~~-~~~--~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      ++ .|+.+++||+.++.  +...+. +..  ++.++.|+ ++.+++++..|+.+++||+..+..+..+. +|...+.++ 
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~-  382 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCI-  382 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeE-
Confidence            99 89999999999999  445555 222  68999998 56899999999999999999999999998 787754332 


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc--CCCCCCCcc
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI--GDSAPKGEE  336 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~--~~~~~~~~~  336 (343)
                      +++..     .+++.++++|+.|+.|++||+.++....   ....+....+..+++++...+++...  .|+.++.++
T Consensus       383 ~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~---~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  383 FSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQ---RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ecccc-----cCCCCeEEEEeCCceEEEEeCCccchhh---hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            11111     2344499999999999999999854222   22223256789999999999998888  566555443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4e-35  Score=217.93  Aligned_cols=276  Identities=18%  Similarity=0.239  Sum_probs=248.4

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ..+++|.+.|.+++|+  |..|++|+.|+++.+|+++..+....  ..+| .+.|-.++|+|..    +.+|++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh-~~svdql~w~~~~----~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGH-TDSVDQLCWDPKH----PDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCC-CcchhhheeCCCC----CcceEEecCCce
Confidence            5667899999999999  99999999999999999998765544  3567 7899999999988    589999999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-e
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  190 (343)
                      |++||++.+++...+....+.+ .+.|+|+|.+++.++.|..|...|.++.+..........+..++|+.++..|+.. +
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecC
Confidence            9999999999999988655555 4899999999999999999999999999988888888899999999888877777 7


Q ss_pred             CCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          191 EEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      .|.|.|.....-+++..++ |+....|+.|+ .+++|++|+.|-.+.+||+...-+++.+. .+.-+|..+.|+.+++  
T Consensus       168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~--  244 (313)
T KOG1407|consen  168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGR--  244 (313)
T ss_pred             CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcc--
Confidence            7999999999999999988 88889999998 47899999999999999999998999998 8999999999999988  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                             +||+||+|..|-|=+++++.     .+.++++.++...++|+|...+++-...|...
T Consensus       245 -------~lASaSEDh~IDIA~vetGd-----~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  245 -------MLASASEDHFIDIAEVETGD-----RVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             -------eeeccCccceEEeEecccCC-----eEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence                   99999999999999999986     66788888999999999999999887776644

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=244.43  Aligned_cols=306  Identities=19%  Similarity=0.247  Sum_probs=250.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .||+|..||.|++|+...            .....++.||..+|+++.|+  |..|++|+.|+.|.+||+-...-...+.
T Consensus        79 ~lAVGYaDGsVqif~~~s------------~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~  146 (888)
T KOG0306|consen   79 LLAVGYADGSVQIFSLES------------EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLR  146 (888)
T ss_pred             eEEEEecCceEEeeccCC------------CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEee
Confidence            479999999999999986            35677889999999999999  9999999999999999999888888999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| +..|+..-|....     +++++.+.|+.|++||+++..+..+.-.|.+.++.+++++  +.+++++.|+.+++|++
T Consensus       147 GH-kd~iT~~~F~~~~-----~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L  218 (888)
T KOG0306|consen  147 GH-KDSITQALFLNGD-----SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL  218 (888)
T ss_pred             cc-hHHHhHHhccCCC-----eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence            99 9999999999866     7999999999999999999999999999999999999998  68999999999999998


Q ss_pred             cC------------------------CceeE-----------EEE-----------------------------------
Q 019326          160 VR------------------------GRRSF-----------YHK-----------------------------------  169 (343)
Q Consensus       160 ~~------------------------~~~~~-----------~~~-----------------------------------  169 (343)
                      ..                        ++.+.           ...                                   
T Consensus       219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e  298 (888)
T KOG0306|consen  219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE  298 (888)
T ss_pred             ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence            10                        00000           000                                   


Q ss_pred             -------------------------------------------------------------------------cCCcceE
Q 019326          170 -------------------------------------------------------------------------IGKEASL  176 (343)
Q Consensus       170 -------------------------------------------------------------------------~~~~~~~  176 (343)
                                                                                               +...|..
T Consensus       299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs  378 (888)
T KOG0306|consen  299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS  378 (888)
T ss_pred             cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence                                                                                     0012244


Q ss_pred             EEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccccc
Q 019326          177 IKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR  255 (343)
Q Consensus       177 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~  255 (343)
                      ++++.+...++++..+.+++|+..+.++++++... .+.+..|.| ++++++|...|.+.+||+.+...+.+++ +|.+.
T Consensus       379 l~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdga  456 (888)
T KOG0306|consen  379 LCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGA  456 (888)
T ss_pred             EEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccc
Confidence            56666666666667888999999989998888766 566666665 5688899999999999999888888888 99999


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc-----cC---CCcccccccccceeEEEcCCCCceecccc
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK-----EK---PLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~---~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      |++++.+|++.         .+++||.|.+|++||..-...     .+   ............|.|+++|||++|++.+.
T Consensus       457 IWsi~~~pD~~---------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  457 IWSISLSPDNK---------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             eeeeeecCCCC---------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            99999999998         899999999999999864321     11   11112334567799999999999999999


Q ss_pred             CCCCCCCcccc
Q 019326          328 GDSAPKGEEKA  338 (343)
Q Consensus       328 ~~~~~~~~~~~  338 (343)
                      -+...+.+-..
T Consensus       528 LdnTVkVyflD  538 (888)
T KOG0306|consen  528 LDNTVKVYFLD  538 (888)
T ss_pred             ccCeEEEEEec
Confidence            99887765443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-35  Score=213.56  Aligned_cols=258  Identities=17%  Similarity=0.222  Sum_probs=221.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .++++.|.+|++|+...            ...++++.+|...|..++.+  +..|++|+.|..+.+||+.+|+.++.+.+
T Consensus        32 ~ltcGsdrtvrLWNp~r------------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   32 CLTCGSDRTVRLWNPLR------------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             EEEcCCCceEEeecccc------------cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            46788999999999876            57889999999999999887  78999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC--cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP--FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      | .+.|+.++|+...     ..+++|+.|.++++||.+.  .++++.+......|.++...  +..+++|+.||+++.||
T Consensus       100 H-~aqVNtV~fNees-----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtyd  171 (307)
T KOG0316|consen  100 H-LAQVNTVRFNEES-----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYD  171 (307)
T ss_pred             c-cceeeEEEecCcc-----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEE
Confidence            9 9999999999988     7999999999999999854  57889998888999999887  45899999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcc--eEEeeec-CCCeEEEEeCCCc
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKR--ILCAAPG-ENGVLFTGGEDRS  233 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~--i~~~~~~-~~~~l~~~~~dg~  233 (343)
                      ++.|+. ..-.+.++|++++|+++++..+++ -++.+++.|-.+++++..++ |...  -...++. ....+++|++||.
T Consensus       172 iR~G~l-~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~  250 (307)
T KOG0316|consen  172 IRKGTL-SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK  250 (307)
T ss_pred             eeccee-ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence            999874 344567899999999999998888 99999999999999998887 3222  2233343 4679999999999


Q ss_pred             EEEEECCCCceeEEeccccccc-EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          234 ITAWDTNSGKVAYCIEDAHSAR-VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      |++||+.....+..+. .|... |.++.++|...         -++++. ++.+..|--+
T Consensus       251 Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~---------~f~~A~-~~~~~~~~~~  299 (307)
T KOG0316|consen  251 VYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMD---------DFITAT-GHGDLFWYQE  299 (307)
T ss_pred             EEEEEeccceeeeeec-cCCceeEEeeecccCcc---------ceeEec-CCceeceeeh
Confidence            9999999999999998 77766 89999999887         555554 3456666543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=243.51  Aligned_cols=261  Identities=20%  Similarity=0.278  Sum_probs=228.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEE-ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFS-YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .+++|+.+++|++|+...            ...+.. +.||.+.|.++++.  ++.+++|+.|.++++||..++++...+
T Consensus       220 ~~~~~s~~~tl~~~~~~~------------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l  287 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNN------------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL  287 (537)
T ss_pred             eEEecCCCceeEEeeccc------------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence            477999999999999987            344444 88999999999999  999999999999999999999999999


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .+| ...|.++...+.       .+++|+.|.+|++|++.+++++..+.+|.++|.++..+  +.++++|+.|++|++||
T Consensus       288 ~gh-~stv~~~~~~~~-------~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  288 QGH-TSSVRCLTIDPF-------LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             cCC-CceEEEEEccCc-------eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            999 999999988753       68889999999999999999999999999999999998  67999999999999999


Q ss_pred             ccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc-eeEEEecCCcc-eEEeeecCCCeEEEEeCCCcE
Q 019326          159 LVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA-KLLCELDGKKR-ILCAAPGENGVLFTGGEDRSI  234 (343)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~-~~~~~~~~~~~-i~~~~~~~~~~l~~~~~dg~i  234 (343)
                      +.+++++.... +...|.++.+.+. ..++.+ .|+.|++||+++. +++..+.++.. +..+.+ .+++|++++.|+.|
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~-~~~~Lvs~~aD~~I  435 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL-RDNFLVSSSADGTI  435 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc-ccceeEeccccccE
Confidence            99999887655 4577888877766 777777 8999999999999 89888885544 444444 78899999999999


Q ss_pred             EEEECCCCceeEEeccc-ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccC
Q 019326          235 TAWDTNSGKVAYCIEDA-HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  298 (343)
                      ++||..+++++..+. + |...|..+++.  ..         .+++++.||++++||++++....
T Consensus       436 k~WD~~~~~~~~~~~-~~~~~~v~~l~~~--~~---------~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  436 KLWDAEEGECLRTLE-GRHVGGVSALALG--KE---------EILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             EEeecccCceeeeec-cCCcccEEEeecC--cc---------eEEEEecCCeeEEEecccCchhh
Confidence            999999999999999 5 67888888876  22         79999999999999999986443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-34  Score=237.03  Aligned_cols=256  Identities=14%  Similarity=0.209  Sum_probs=226.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      ++++-++|.|.||+.++            ...+..+.-..-||.+..|-  .+++++|+.|..||||+..+++.+..|..
T Consensus        28 ~la~LynG~V~IWnyet------------qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA   95 (794)
T KOG0276|consen   28 ILAALYNGDVQIWNYET------------QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA   95 (794)
T ss_pred             EEEeeecCeeEEEeccc------------ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec
Confidence            57788999999999998            56667777788999999998  78999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-CcceeeeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVN  158 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd  158 (343)
                      | ...|.+++.+|..     .++++++.|-+|++||.+ .+.+.+++.+|...|.+++|+|. .+.+++++-|++|++|.
T Consensus        96 H-~DyIR~iavHPt~-----P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs  169 (794)
T KOG0276|consen   96 H-SDYIRSIAVHPTL-----PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS  169 (794)
T ss_pred             c-ccceeeeeecCCC-----CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence            9 9999999999998     899999999999999995 46789999999999999999995 58999999999999999


Q ss_pred             ccCCceeEEEE-cCCcceEEEEeCCC--CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCC-CeEEEEeCCC
Q 019326          159 LVRGRRSFYHK-IGKEASLIKFDGSG--EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGEN-GVLFTGGEDR  232 (343)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg  232 (343)
                      +.+..+.+... +...|+++.+-+.|  .+++++ .|..+++||.++..+++++. |...|..++|++. ..+++|++||
T Consensus       170 lgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDG  249 (794)
T KOG0276|consen  170 LGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDG  249 (794)
T ss_pred             cCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCc
Confidence            98887766554 45789999998755  688888 89999999999999999998 8889999999976 6999999999


Q ss_pred             cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          233 SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      +++||+..+-+...++. -...++++++..+.+.         .++.|...|.|
T Consensus       250 TvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~---------~i~vG~Deg~i  293 (794)
T KOG0276|consen  250 TVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDG---------KIAVGFDEGSV  293 (794)
T ss_pred             cEEEecCcceehhhhhh-cCCceEEEEeecCCCC---------eEEEeccCCcE
Confidence            99999999888877777 6678899998877765         56666555544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.3e-33  Score=255.55  Aligned_cols=268  Identities=14%  Similarity=0.156  Sum_probs=214.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|++|+.|+.|+||+.......   ... ...+...+. +...|.+++|+   +.+|++++.||.|++||+.+++.+..+
T Consensus       497 ~latgg~D~~I~iwd~~~~~~~---~~~-~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~  571 (793)
T PLN00181        497 FFATAGVNKKIKIFECESIIKD---GRD-IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM  571 (793)
T ss_pred             EEEEEeCCCEEEEEECCccccc---ccc-cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3789999999999997641100   000 011223333 35689999997   689999999999999999999999999


Q ss_pred             ccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEe-cCCCEEEEEeCCCeEEE
Q 019326           79 HHHESSSVTSLAFYT-PQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVH-HSGKLALTVGRDDCLAM  156 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~d~~i~~  156 (343)
                      .+| ...|++++|+| ++     .+|++|+.||+|++||+++++.+..+..+ ..|.++.|+ +++.+|++|+.||.|++
T Consensus       572 ~~H-~~~V~~l~~~p~~~-----~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        572 KEH-EKRVWSIDYSSADP-----TLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             cCC-CCCEEEEEEcCCCC-----CEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            999 89999999997 45     79999999999999999998888888754 678999995 46899999999999999


Q ss_pred             EEccCCce-e-EEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc------eeEEEec-CCcceEEeeec-CCCeE
Q 019326          157 VNLVRGRR-S-FYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA------KLLCELD-GKKRILCAAPG-ENGVL  225 (343)
Q Consensus       157 wd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~------~~~~~~~-~~~~i~~~~~~-~~~~l  225 (343)
                      ||+++.+. . ....+...+..+.|. ++..++++ .|+.|++||++..      ..+..+. |...+.++.++ ++.+|
T Consensus       645 wD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~l  723 (793)
T PLN00181        645 YDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYI  723 (793)
T ss_pred             EECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEE
Confidence            99987653 2 233455788999997 66777777 8999999999743      4566665 67778889888 46799


Q ss_pred             EEEeCCCcEEEEECCCCceeEEec------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIE------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      ++|+.|+.|++|+.....++..+.            ..|...|.+++|++++.         +|++|+.||.|+||++
T Consensus       724 asgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~---------~lva~~~dG~I~i~~~  792 (793)
T PLN00181        724 ATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS---------TLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC---------eEEEecCCCcEEEEec
Confidence            999999999999987665443221            13556799999999887         9999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.8e-34  Score=221.78  Aligned_cols=279  Identities=19%  Similarity=0.270  Sum_probs=229.1

Q ss_pred             CCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           40 AHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        40 ~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      .|.+.|.++...+..+++|++||.+++||.. |+....+.+| .++|.+++|.-...  ....|++++.|.++++|..+.
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Gh-t~~ik~v~~v~~n~--~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGH-TGPIKSVAWVIKNS--SSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecC-CcceeeeEEEecCC--ccceEEEecCCceEEEEEecC
Confidence            4889999988889999999999999999976 8899999999 99999888875541  124699999999999999876


Q ss_pred             cce----eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--------------------------eeEEEE
Q 019326          120 FVL----LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR--------------------------RSFYHK  169 (343)
Q Consensus       120 ~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~--------------------------~~~~~~  169 (343)
                      ++.    +...++|...|-+++..+++..+++|+.|.+|.+|+..+..                          .+....
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            543    34445999999999999999999999999999999932110                          112233


Q ss_pred             cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCc---e
Q 019326          170 IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGK---V  244 (343)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---~  244 (343)
                      +..+|..+.|++. ..++++ .|.+|+.||+.++.....+..+..++|+..++ .++|++|+.|..|++||.+++.   .
T Consensus       259 Ht~~Vs~V~w~d~-~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  259 HTEPVSSVVWSDA-TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             cccceeeEEEcCC-CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            4578899999994 445555 99999999999999999999999999999985 5799999999999999998764   4


Q ss_pred             eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccc-ccccceeEEEcCCCCcee
Q 019326          245 AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA-KTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       245 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~  323 (343)
                      ..++. +|...|.++.|+|...        ++|++++.|+++++||+++..    .|+..+ .+..+|.++.|. .+.++
T Consensus       338 ~~s~~-gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k----~plydI~~h~DKvl~vdW~-~~~~I  403 (423)
T KOG0313|consen  338 SQSLI-GHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTK----APLYDIAGHNDKVLSVDWN-EGGLI  403 (423)
T ss_pred             EEeee-cchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCC----CcceeeccCCceEEEEecc-CCceE
Confidence            45676 9999999999999876        489999999999999999853    133332 446789999995 45678


Q ss_pred             ccccCCCCCCCccc
Q 019326          324 RPQIGDSAPKGEEK  337 (343)
Q Consensus       324 ~~~~~~~~~~~~~~  337 (343)
                      +.|..|.+++..+-
T Consensus       404 vSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  404 VSGGADNKLRIFKG  417 (423)
T ss_pred             EeccCcceEEEecc
Confidence            88999988776543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-34  Score=244.71  Aligned_cols=244  Identities=15%  Similarity=0.193  Sum_probs=208.7

Q ss_pred             EeEEec-CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC---------------------------------------
Q 019326           34 QLFSYP-AHLSPITTVAVS--GTAAASGGTDDTIHLYDLST---------------------------------------   71 (343)
Q Consensus        34 ~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~---------------------------------------   71 (343)
                      ..+.+. +|.+.|.++.|+  |.+||+||.|+.|+||.+..                                       
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            345556 899999999999  99999999999999998753                                       


Q ss_pred             ---------------------CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           72 ---------------------SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        72 ---------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                                           .++++.|.+| .+.|..|.|+.++      +|++++.|.+|++|++...+++..|. |.
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn~------fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn  409 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGH-TADILDLSWSKNN------FLLSSSMDKTVRLWHPGRKECLKVFS-HN  409 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhcc-chhheecccccCC------eeEeccccccEEeecCCCcceeeEEe-cC
Confidence                                 1234566788 9999999999887      99999999999999999999999998 99


Q ss_pred             ccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe
Q 019326          131 KGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       131 ~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~  208 (343)
                      ..|+|++|+| |.++|++|+-|+.|+||++...+.+.......-|++++|.|+|+..+++ .+|.+++|+....+.....
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            9999999999 5699999999999999999999988888889999999999999999999 9999999999988776655


Q ss_pred             c---C------CcceEEeeecCC--CeEEEEeCCCcEEEEECCCCceeEEecccccc-cEEEEEEEecCCCCCCCCCCeE
Q 019326          209 D---G------KKRILCAAPGEN--GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSA-RVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       209 ~---~------~~~i~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                      .   +      ...|+.+.+.++  ..+++.+.|..|+|||.++..++..++..+.. .-....|+.++.         +
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk---------~  560 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK---------H  560 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC---------E
Confidence            3   1      237999999854  35788889999999999988888888833322 224455666666         9


Q ss_pred             EEEEcCCCcEEEEeccCc
Q 019326          277 VASASSDGVICVWDVRMA  294 (343)
Q Consensus       277 l~s~~~dg~i~vwd~~~~  294 (343)
                      |+++++|..|++|++...
T Consensus       561 IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEEeecCceEEEEeCCCC
Confidence            999999999999998543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-35  Score=225.77  Aligned_cols=268  Identities=20%  Similarity=0.265  Sum_probs=231.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|.+|+..+++.    .+.++++....+--+..+|.|+.|+  ..+||+|+.||.|++|.+.+|.+++.|.
T Consensus       227 yLvsgSvDGFiEVWny~~GKl----rKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  227 YLVSGSVDGFIEVWNYTTGKL----RKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             eEeeccccceeeeehhccchh----hhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            479999999999999987432    2345556666667789999999999  7899999999999999999999999998


Q ss_pred             -cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 -HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 -~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                       .| ...|+|+.|+.++     ..+++++.|.++++--++.++++..+++|...|+...|.++|.++++++.||+|++|+
T Consensus       303 rAH-tkGvt~l~FSrD~-----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~  376 (508)
T KOG0275|consen  303 RAH-TKGVTCLSFSRDN-----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH  376 (508)
T ss_pred             hhh-ccCeeEEEEccCc-----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence             56 9999999999998     7999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEEEcC---CcceEEEEeC-CCCEEEEE-eCCcEEEEEcccceeEEEec----CCcceEEeeec-CCCeEEEE
Q 019326          159 LVRGRRSFYHKIG---KEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDAKLLCELD----GKKRILCAAPG-ENGVLFTG  228 (343)
Q Consensus       159 ~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~-~~~~l~~~  228 (343)
                      ..+.+++..+...   .++..+-.-| +...++++ ..+++.+.++. ++.++.+.    ..+...+.+.+ .+.++++.
T Consensus       377 ~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYci  455 (508)
T KOG0275|consen  377 GKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCI  455 (508)
T ss_pred             CcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence            9999987766543   4566666666 45577777 78888888865 56777776    23445555555 57899999


Q ss_pred             eCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ++|+.++.|...+|+...++. -|...|.+++-+|..+         .|++-++||.+++|.
T Consensus       456 gED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqN---------llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  456 GEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQN---------LLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCcEEEEEEeecCceeeeee-cccccccccccCcccc---------hhhhhcccchhhhcC
Confidence            999999999999999999999 9999999999999887         999999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=242.44  Aligned_cols=261  Identities=15%  Similarity=0.179  Sum_probs=227.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      ++++-..|.|++||.+-            ...+..|..|.+||..++|+  +.++++|+.|-.|++|+.++.+++.++.+
T Consensus        24 ILtslHsG~IQlWDYRM------------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G   91 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG   91 (1202)
T ss_pred             EEEeecCceeeeehhhh------------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence            57888899999999987            57788899999999999999  88999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | -..|..+.|++.-     .++++++.|-+|+||+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+.
T Consensus        92 H-lDYVRt~~FHhey-----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen   92 H-LDYVRTVFFHHEY-----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             c-cceeEEeeccCCC-----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            9 9999999999998     899999999999999999999999999999999999999999999999999999999985


Q ss_pred             CCcee---------------------------E---EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe-
Q 019326          161 RGRRS---------------------------F---YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL-  208 (343)
Q Consensus       161 ~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~-  208 (343)
                      .-+..                           .   ...+...|+-++|+|.-..++++ .|..|++|.+...+....- 
T Consensus       166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt  245 (1202)
T KOG0292|consen  166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT  245 (1202)
T ss_pred             chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence            32110                           0   01123557889999999999999 8999999998876644332 


Q ss_pred             --cCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc
Q 019326          209 --DGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       209 --~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                        .|..+|.++-|++ .+++++.++|++|++||+...+.++++. ...+.-+.++.+|..+          |.+++.|+-
T Consensus       246 crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr-rendRFW~laahP~lN----------LfAAgHDsG  314 (1202)
T KOG0292|consen  246 CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR-RENDRFWILAAHPELN----------LFAAGHDSG  314 (1202)
T ss_pred             hhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee-ccCCeEEEEEecCCcc----------eeeeecCCc
Confidence              2889999999985 5799999999999999999999999998 5567889999999885          555556776


Q ss_pred             EEEEecc
Q 019326          286 ICVWDVR  292 (343)
Q Consensus       286 i~vwd~~  292 (343)
                      +.||.++
T Consensus       315 m~VFkle  321 (1202)
T KOG0292|consen  315 MIVFKLE  321 (1202)
T ss_pred             eEEEEEc
Confidence            7777776

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.9e-35  Score=233.94  Aligned_cols=284  Identities=16%  Similarity=0.165  Sum_probs=233.9

Q ss_pred             eeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC-CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           31 TLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST-SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      +.+.++++.||...|+++.|.   +.+|++++.|+.|+||++.. +++++++.+| ..+|.+++|++.+     ..++++
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g-----~~fLS~  276 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCG-----TSFLSA  276 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccC-----Ceeeee
Confidence            445678899999999999998   78999999999999999987 8999999999 9999999999999     899999


Q ss_pred             eCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCC
Q 019326          107 SADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGE  184 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~  184 (343)
                      +.|+.|++||+++|+++..+. ....+.++.|+|++ +.+++|+.|+.|+.||+++++.+...... +.+..+.|-+++.
T Consensus       277 sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             ecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence            999999999999999999987 45678999999998 89999999999999999999976655443 7899999999999


Q ss_pred             EEEEE-eCCcEEEEEcccceeEEEec--CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCc---eeEEecccccc--c
Q 019326          185 KFFMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGK---VAYCIEDAHSA--R  255 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~h~~--~  255 (343)
                      +++++ .++.+++|+.+..-.++...  ......|+..+ .++++++-+.|+.|.+|.+...-   ....+. +|..  .
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGy  434 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGY  434 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ceeccCc
Confidence            99999 89999999999887776554  33345566666 46799999999999999876432   233455 7753  4


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc-eeccccCCCCCCC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS-FKRPQIGDSAPKG  334 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~~~~~~~~~~~~~  334 (343)
                      -..+.|+|++.         +|++|+.||.+.+||.++.+.....+   .+ ...+..+.|.|... -++.+.-+|.++.
T Consensus       435 s~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lk---ah-~~~ci~v~wHP~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  435 SCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLK---AH-DQPCIGVDWHPVEPSKVATCGWDGLIKI  501 (503)
T ss_pred             eeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccc---cC-CcceEEEEecCCCcceeEecccCceeEe
Confidence            56678888887         99999999999999999875333222   22 46788999998743 4555556666654


Q ss_pred             c
Q 019326          335 E  335 (343)
Q Consensus       335 ~  335 (343)
                      +
T Consensus       502 w  502 (503)
T KOG0282|consen  502 W  502 (503)
T ss_pred             c
Confidence            3

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-33  Score=223.23  Aligned_cols=290  Identities=15%  Similarity=0.141  Sum_probs=235.6

Q ss_pred             ceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC---eeeeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           29 TLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        29 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      ..+.+..+.+..|.+.|.-+.|+  |.+||+++.|.+..+|.+...   +...++.+| ..+|..+.|+|+.     ++|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDd-----ryL  284 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDD-----RYL  284 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCC-----CeE
Confidence            44566677788999999999999  999999999999999988654   447788899 9999999999999     899


Q ss_pred             EEeeCCCeEEEEECCCcceeeeeee-ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeC
Q 019326          104 FSTSADGFVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDG  181 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~  181 (343)
                      ++++.|..+.+||..++.+...+.. +...+.+++|.|||..+++|+.|+++..||+.....-.-... ...+..+++.+
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence            9999999999999999998887763 457899999999999999999999999999976542221111 25688999999


Q ss_pred             CCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEE--
Q 019326          182 SGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVK--  257 (343)
Q Consensus       182 ~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~--  257 (343)
                      +|+++++. .|..+++|+.++......+..+.+|++++.+ +++++++.-.+..+++||+.....+..+. +|...-.  
T Consensus       365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiI  443 (519)
T KOG0293|consen  365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFII  443 (519)
T ss_pred             CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEE
Confidence            99999988 9999999999988777777788999999999 56788888899999999999888888888 8875433  


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCce-eccccCCCCCCCcc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF-KRPQIGDSAPKGEE  336 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-~~~~~~~~~~~~~~  336 (343)
                      .-+|-..+        ..++++||+|+.|+||+..+++.   ......+ ...|+|++|+|.... +++++.|++++.+.
T Consensus       444 rSCFgg~~--------~~fiaSGSED~kvyIWhr~sgkl---l~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  444 RSCFGGGN--------DKFIASGSEDSKVYIWHRISGKL---LAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             EeccCCCC--------cceEEecCCCceEEEEEccCCce---eEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            33343332        22999999999999999998752   2222233 356999999997664 56666777766554


Q ss_pred             c
Q 019326          337 K  337 (343)
Q Consensus       337 ~  337 (343)
                      .
T Consensus       512 ~  512 (519)
T KOG0293|consen  512 P  512 (519)
T ss_pred             C
Confidence            3

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-33  Score=223.36  Aligned_cols=281  Identities=20%  Similarity=0.203  Sum_probs=242.7

Q ss_pred             eEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe------------------ccCCCCCeEEEEEeCC
Q 019326           35 LFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI------------------HHHESSSVTSLAFYTP   94 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~v~~l~~~~~   94 (343)
                      ...+..|.-+|+|++++  +.+.++++.+|+|.-|++.+++....+                  ..| ...+.+++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h-~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH-VKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccc-cceeEEEEEcCC
Confidence            56667899999999999  779999999999999999888633100                  145 788999999999


Q ss_pred             CCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-EEEEcCCc
Q 019326           95 QNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-FYHKIGKE  173 (343)
Q Consensus        95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~  173 (343)
                      +     ++|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+++++|++.....+ ..+.++..
T Consensus       214 g-----kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  214 G-----KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             C-----cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            9     89999999999999999999999999999999999999998899999999999999999876543 34556677


Q ss_pred             ceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccc
Q 019326          174 ASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH  252 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h  252 (343)
                      |..+....-++.+.++ .|.++++|++.....+....+.+.+-|++|-++..+++|+.+|.|.+|++.+.+++.+...+|
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccc
Confidence            8888877777777777 899999999976666666668889999999999999999999999999999999998877566


Q ss_pred             c-----------ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc
Q 019326          253 S-----------ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       253 ~-----------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                      .           ..|++++..+..+         ++++|+.+|.|++|.+..+.. ...++......+.|++++|+++++
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sd---------L~asGS~~G~vrLW~i~~g~r-~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSD---------LLASGSWSGCVRLWKIEDGLR-AINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             cccCCccccccccceeeeEecccCc---------eEEecCCCCceEEEEecCCcc-ccceeeecccccEEEEEEEccCCC
Confidence            3           2789999999988         999999999999999998732 334566777888999999999999


Q ss_pred             eeccccCCCC
Q 019326          322 FKRPQIGDSA  331 (343)
Q Consensus       322 ~~~~~~~~~~  331 (343)
                      +++++.+++.
T Consensus       439 ~ivagiGkEh  448 (479)
T KOG0299|consen  439 RIVAGIGKEH  448 (479)
T ss_pred             EEEEeccccc
Confidence            9999988874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=212.90  Aligned_cols=281  Identities=16%  Similarity=0.160  Sum_probs=248.3

Q ss_pred             EEecCCCCCeEEEEec-----CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           36 FSYPAHLSPITTVAVS-----GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      .+..||..||..++|+     |-+|++++.||.-.+-+-++|.-+.+|.+| .+.|++.....+.     ...++++.|-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na-----~~aasaaadf   81 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNA-----TRAASAAADF   81 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchh-----hhhhhhcccc
Confidence            3456999999999998     678999999999999999999999999999 9999999998887     6888999999


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEE
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      +-++||.-++..+.++. |+..|..++|+.|.++|++|+.+..+++||++..+...  ...+...|..+.|....+.+++
T Consensus        82 takvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence            99999999999999988 99999999999999999999999999999998765332  3345678889999998898888


Q ss_pred             E-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCC
Q 019326          189 V-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       189 ~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      + .++.|++||.++++.++.+..+.+|+++..+.++.+++-...+.|.+||..+...++.+.  -...|.+..++|+.. 
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~-  237 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKE-  237 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc--CccccccccccCCCc-
Confidence            7 999999999999999999999999999999977777777788899999999999999887  667788888999886 


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                              .+++|++|..++.||..++.....   ....+.++|.|+.|+|+|.+-+.|++|+.++.+..
T Consensus       238 --------~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  238 --------FFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             --------eEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence                    999999999999999999853322   23456678999999999999999999998776543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-33  Score=222.65  Aligned_cols=258  Identities=17%  Similarity=0.189  Sum_probs=225.6

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      -.+.+|+..+            .....++...+..|.++.|.  |.+||+|+..|.|+++|..+...++.+..| +.+|.
T Consensus        48 ~rvqly~~~~------------~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~  114 (487)
T KOG0310|consen   48 VRVQLYSSVT------------RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVH  114 (487)
T ss_pred             cEEEEEecch------------hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-cCcee
Confidence            4678888776            23333344456789999998  999999999999999997776678889999 99999


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCC-cee
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRG-RRS  165 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~-~~~  165 (343)
                      .+.|+|.++    ..|++|+.|+.+++||+.+......+.+|++.|.+.+|+|.. .++++|+.||.|++||++.. ..+
T Consensus       115 ~~~f~~~d~----t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v  190 (487)
T KOG0310|consen  115 VTKFSPQDN----TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV  190 (487)
T ss_pred             EEEecccCC----eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence            999999984    789999999999999999988766899999999999999964 58999999999999999988 778


Q ss_pred             EEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccc-eeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC
Q 019326          166 FYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDA-KLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  242 (343)
                      ....++.+|..+.+-|.|..++++..+.+++||+.+| +.+..+. |...|+|+.+. ++..|++|+-|+.+++||+.+.
T Consensus       191 ~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  191 VELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             EEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            8899999999999999999999999999999999954 4444444 99999999997 5689999999999999999989


Q ss_pred             ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          243 KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       243 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +.+..+.  -.++|.+++++|+++         .++.|..||.+.+=+....+
T Consensus       271 Kvv~s~~--~~~pvLsiavs~dd~---------t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  271 KVVHSWK--YPGPVLSIAVSPDDQ---------TVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EEEEeee--cccceeeEEecCCCc---------eEEEecccceeeeehhhccc
Confidence            9998887  889999999999887         99999999998887655543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-32  Score=203.06  Aligned_cols=241  Identities=16%  Similarity=0.196  Sum_probs=209.3

Q ss_pred             EecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           37 SYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      .++||..+++.+.|+  |++|.+++.|....+|-..+|+.+.++.+| .+.|+|+....+.     +.+++|+.|.++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s-----~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDS-----KHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCc-----ceeeeccccceeEE
Confidence            356999999999999  999999999999999999999999999999 9999999999888     89999999999999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-----CCeEEEEEccC-------CceeE-EEEcCCcceEEEEeC
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-----DDCLAMVNLVR-------GRRSF-YHKIGKEASLIKFDG  181 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----d~~i~~wd~~~-------~~~~~-~~~~~~~~~~~~~~~  181 (343)
                      ||+++++++..++ ...+|..+.|+++|++++....     .+.|.++|++.       .++.. .......+..+-|.|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9999999999998 5779999999999988877665     46799999983       33233 333447788999999


Q ss_pred             CCCEEEEE-eCCcEEEEEcccceeEEEec--CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec--------
Q 019326          182 SGEKFFMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE--------  249 (343)
Q Consensus       182 ~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------  249 (343)
                      -++.++++ .+|.|..||+++++....-.  |...|+.++++ +..++++++.|.+-++||..+.+.++++.        
T Consensus       158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence            99999999 99999999999986655443  88899999999 45799999999999999998754443332        


Q ss_pred             ----------------------------------------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          250 ----------------------------------------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       250 ----------------------------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                                                                    .+|-++|++++|+|++.         ..+||++|
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk---------sYsSGGED  308 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK---------SYSSGGED  308 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc---------ccccCCCC
Confidence                                                          47889999999999988         89999999


Q ss_pred             CcEEEEeccC
Q 019326          284 GVICVWDVRM  293 (343)
Q Consensus       284 g~i~vwd~~~  293 (343)
                      |.||+.-.+.
T Consensus       309 G~VR~h~Fd~  318 (327)
T KOG0643|consen  309 GYVRLHHFDS  318 (327)
T ss_pred             ceEEEEEecc
Confidence            9999987764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=226.13  Aligned_cols=282  Identities=18%  Similarity=0.226  Sum_probs=241.6

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      ....+.+..|.+.|..+.|-  ...|++|+.|..|++|+....+  .+..+.+. .+.|+.+.|.+++     ..+++++
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs-~g~it~~d~d~~~-----~~~iAas  238 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGS-LGNITSIDFDSDN-----KHVIAAS  238 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhcc-CCCcceeeecCCC-----ceEEeec
Confidence            34556777899999999998  4899999999999999998766  66777777 8899999999998     7999999


Q ss_pred             CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          108 ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      .|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|+.||+....+....-....+..+..+  ...++
T Consensus       239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~  316 (459)
T KOG0288|consen  239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVI  316 (459)
T ss_pred             CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeee
Confidence            9999999999999999999999999999999887777999999999999999998887776666666666665  45566


Q ss_pred             EE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccc----cccEEEEEE
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH----SARVKGIVV  261 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h----~~~v~~~~~  261 (343)
                      ++ .|++|+.||.++.......+..+.|+++..+ ++..+++++.|.++.+.|+++.+....+. +.    ....+.+.|
T Consensus       317 SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVF  395 (459)
T ss_pred             ecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEE
Confidence            66 8999999999999999999988899999998 56788888999999999999988777765 22    234788999


Q ss_pred             EecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          262 LTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      +|++.         |+++||.||.|+||++.+++.++....  ...+..|++++|+|.|..+++...++...
T Consensus       396 Spd~~---------YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~sG~~Llsadk~~~v~  456 (459)
T KOG0288|consen  396 SPDGS---------YVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNPSGSGLLSADKQKAVT  456 (459)
T ss_pred             CCCCc---------eeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcCCCchhhcccCCcceE
Confidence            99988         999999999999999999976654432  23333699999999999999888766543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-31  Score=202.96  Aligned_cols=277  Identities=16%  Similarity=0.191  Sum_probs=226.8

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-  108 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-  108 (343)
                      +++...++.-.+.|+++.|+  |..|++++.|..+++||..+++.++.+..+ ...+..++|....     ..++.++. 
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~-----~~~i~sStk   77 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHS-----NTVIHSSTK   77 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCC-----ceEEEccCC
Confidence            34445555567899999999  999999999999999999999999999988 8899999998877     56776666 


Q ss_pred             -CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          109 -DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       109 -dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                       |.+|+..++.+.+.++.+.+|...|.+|+.+|-+..+++++.|++|++||++..++....... ....++|+|.|-++|
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFA  156 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEE
Confidence             889999999999999999999999999999999999999999999999999987776555543 345689999999999


Q ss_pred             EE-eCCcEEEEEcccc--eeEEEec----CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccE---
Q 019326          188 MV-TEEKVGIHQAEDA--KLLCELD----GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARV---  256 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~--~~~~~~~----~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v---  256 (343)
                      ++ ....|++||++..  .+...+.    .....+.+.|+ +|++++.++..+.+++.|.-+|..+.++. .+...-   
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~  235 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLP  235 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcc
Confidence            99 5559999999974  3455554    35778999999 57899999999999999999999888887 554322   


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      .+..|.|+++         ++++|+.||+|.+|+++++.+..   ........++.|+.|.|.-...+.+..
T Consensus       236 ~~a~ftPds~---------Fvl~gs~dg~i~vw~~~tg~~v~---~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  236 LSATFTPDSK---------FVLSGSDDGTIHVWNLETGKKVA---VLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             eeEEECCCCc---------EEEEecCCCcEEEEEcCCCcEee---EecCCCCCCccccccCCceeeeeecCc
Confidence            4566778777         99999999999999999885322   222224567888888886665555443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.2e-32  Score=211.47  Aligned_cols=263  Identities=12%  Similarity=0.173  Sum_probs=226.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .||+|.-+|.|+||+..+.            .....+...-..|.-|.|+  +..|+.|+.||.+-+|.+.++...+.+.
T Consensus       120 lLATGdmsG~v~v~~~stg------------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~  187 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTG------------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS  187 (399)
T ss_pred             EEEecCCCccEEEEEcccC------------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence            4899999999999999872            2222332345667788888  8899999999999999999988888999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec-cccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH-KKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      +| +.++++=.|.|+|     +.++++..||+|++||+.+++++..+... .....++.++..+..++.|..++.+++-+
T Consensus       188 Gh-~~~ct~G~f~pdG-----Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  188 GH-NSPCTCGEFIPDG-----KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             CC-CCCcccccccCCC-----ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            99 9999999999999     89999999999999999999998888743 33667888999999999999999999999


Q ss_pred             ccCCceeEEEEc---------CCcceEEE---EeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeE
Q 019326          159 LVRGRRSFYHKI---------GKEASLIK---FDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVL  225 (343)
Q Consensus       159 ~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l  225 (343)
                      ..+++.+.....         ...+.++.   ++..=.+++++ -||+|.|||+...++.....|+.+|+.+.|.+..+|
T Consensus       262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l  341 (399)
T KOG0296|consen  262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYL  341 (399)
T ss_pred             cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchh
Confidence            888887655441         23334444   44455667777 899999999999999999999999999999887899


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      ++++.+|.|+.||.++|+.+.++. +|...|.+++++|+.+         +++|+|.|++.+||++.
T Consensus       342 ~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~---------~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  342 LTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKR---------LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCc---------EEEEecCCCeEEEEecC
Confidence            999999999999999999999999 9999999999999888         99999999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8e-33  Score=237.17  Aligned_cols=271  Identities=16%  Similarity=0.213  Sum_probs=233.2

Q ss_pred             cCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           39 PAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      ......|..++|+  ..+++++-..|.|++||.+-+.++..|..| .++|..++|+|..     .++++|+.|-.|++|+
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH-dGpVRgv~FH~~q-----plFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH-DGPVRGVDFHPTQ-----PLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-CCccceeeecCCC-----CeEEecCCccEEEEEe
Confidence            3456788999999  678999999999999999999999999999 9999999999998     8999999999999999


Q ss_pred             CCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcE
Q 019326          117 ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKV  194 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i  194 (343)
                      .++.+++.++.+|-+.|..+.|++.-.++++++.|.+|+||+..+.+++.... +.+-|.|..|+|....++++ -|.+|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence            99999999999999999999999999999999999999999999999887665 55889999999999999999 89999


Q ss_pred             EEEEccccee----------------------------E-EEec-CCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCc
Q 019326          195 GIHQAEDAKL----------------------------L-CELD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       195 ~~~d~~~~~~----------------------------~-~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      ++||+..-+.                            + ..+. |...|+-++|++. .++++|++|+.|++|.+..-+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9999853110                            0 1112 6667888899864 699999999999999987544


Q ss_pred             --eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccc-ccccceeEEEcCCCC
Q 019326          244 --VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA-KTNSRLTCLAGSSTK  320 (343)
Q Consensus       244 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~  320 (343)
                        .+-+.. +|...|+++.|+|..+         +++|.|+|++|+|||+....     .+..+ ..+++..+++.+|..
T Consensus       240 aWEvDtcr-gH~nnVssvlfhp~q~---------lIlSnsEDksirVwDm~kRt-----~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  240 AWEVDTCR-GHYNNVSSVLFHPHQD---------LILSNSEDKSIRVWDMTKRT-----SVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             ceeehhhh-cccCCcceEEecCccc---------eeEecCCCccEEEEeccccc-----ceeeeeccCCeEEEEEecCCc
Confidence              233455 8999999999999887         99999999999999998754     22223 446789999999998


Q ss_pred             ceeccccCCC
Q 019326          321 SFKRPQIGDS  330 (343)
Q Consensus       321 ~~~~~~~~~~  330 (343)
                      .+.+++-..|
T Consensus       305 NLfAAgHDsG  314 (1202)
T KOG0292|consen  305 NLFAAGHDSG  314 (1202)
T ss_pred             ceeeeecCCc
Confidence            8888776655

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=8.9e-34  Score=223.38  Aligned_cols=261  Identities=13%  Similarity=0.200  Sum_probs=231.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|..|++|++...          +...+.++.|..++|+.+.|.  +..+++++.|+.+++|++...+...++.
T Consensus       189 tlatgg~Dr~Ik~W~v~~~----------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs  258 (459)
T KOG0288|consen  189 TLATGGSDRIIKLWNVLGE----------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS  258 (459)
T ss_pred             hhhhcchhhhhhhhhcccc----------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc
Confidence            4789999999999999862          145677788889999999999  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| ...|+++.|....     ..+++|+.|.+|++||+....+..++. ....+.+|..+  ...++++..|++|++||+
T Consensus       259 GH-tdkVt~ak~~~~~-----~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~  329 (459)
T KOG0288|consen  259 GH-TDKVTAAKFKLSH-----SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDI  329 (459)
T ss_pred             cc-ccceeeehhhccc-----cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEec
Confidence            99 9999999999877     459999999999999999888887765 34566777776  457899999999999999


Q ss_pred             cCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----CCcceEEeeecC-CCeEEEEeCCC
Q 019326          160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----GKKRILCAAPGE-NGVLFTGGEDR  232 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----~~~~i~~~~~~~-~~~l~~~~~dg  232 (343)
                      ++..+....+..+.+.++..++++..+.++ .|..+.++|+++......+.     .....+.+.|+| +.|+++|+.||
T Consensus       330 Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg  409 (459)
T KOG0288|consen  330 RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG  409 (459)
T ss_pred             cCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence            999999999999999999999999999999 99999999999999888776     234578888985 57999999999


Q ss_pred             cEEEEECCCCceeEEecccccc-cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          233 SITAWDTNSGKVAYCIEDAHSA-RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      .|+||++.++++...+...+.. .|+++.|+|.+.         .|++++.++.+.+|.
T Consensus       410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~---------~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS---------GLLSADKQKAVTLWT  459 (459)
T ss_pred             cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc---------hhhcccCCcceEecC
Confidence            9999999999999888855554 699999999988         899999999999993

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.6e-32  Score=204.85  Aligned_cols=266  Identities=15%  Similarity=0.179  Sum_probs=212.9

Q ss_pred             CCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC-CeeeeE-eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           40 AHLSPITTVAVS---GTAAASGGTDDTIHLYDLST-SSSLGA-IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        40 ~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ...+.|.+|+|+   ..++++++.||+||+|+++. |..+.. ...| .++|.+++|+.++     ..+++|+.|+.+++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~Wsddg-----skVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWSDDG-----SKVFSGGCDKQAKL   98 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-CCCeEEEEEccCC-----ceEEeeccCCceEE
Confidence            356789999999   57788999999999999987 344433 3456 8999999999999     79999999999999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCC--EEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGK--LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE  191 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  191 (343)
                      ||+.++ .+..+..|.++|..+.|-+...  .|++|+.|++|+.||.+...++....+++.+.++..-  ...++++ .+
T Consensus        99 wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~  175 (347)
T KOG0647|consen   99 WDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAE  175 (347)
T ss_pred             EEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecC
Confidence            999998 5667778999999999988664  8999999999999999999999999999988877653  3455666 89


Q ss_pred             CcEEEEEcccceeEE-Eec--CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC--ceeEEeccccc---------ccE
Q 019326          192 EKVGIHQAEDAKLLC-ELD--GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG--KVAYCIEDAHS---------ARV  256 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~-~~~--~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~h~---------~~v  256 (343)
                      +.|.+|+++++.... ...  ..-.+.|++.. +....+.|+-+|.+.+..+..+  +.-..++ .|.         -.|
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk-CHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK-CHRSTNSVNDDVYAV  254 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-EeccCCCCCCceEEe
Confidence            999999997764332 222  44567788766 5556699999999999988876  3344555 554         268


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ++|+|+|...         .|+|++.||++.+||-+...+.+..    ..+..+|+|-+|+.+|.+.+-+.+
T Consensus       255 Nsi~FhP~hg---------tlvTaGsDGtf~FWDkdar~kLk~s----~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  255 NSIAFHPVHG---------TLVTAGSDGTFSFWDKDARTKLKTS----ETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cceEeecccc---------eEEEecCCceEEEecchhhhhhhcc----CcCCCccceeEecCCCCEEEEEee
Confidence            8999999887         9999999999999998875433322    245567999999999998875544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.4e-32  Score=234.54  Aligned_cols=270  Identities=20%  Similarity=0.239  Sum_probs=231.2

Q ss_pred             CCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeE-eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           41 HLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGA-IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        41 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      |...+++..|..+++++++.|++|++||..++..+.. +.+| .+.|.++++...+     .++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-~g~V~~l~~~~~~-----~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-FGGVWGLAFPSGG-----DKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCC-CCCceeEEEecCC-----CEEEEEecCCcEEeEecCC
Confidence            6778899999999999999999999999999998888 9999 9999999999755     7999999999999999999


Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      +++...+.+|.+.|.++...+.  .+++|+.|.+|++|++.++..+.... +..+|.++..+  +.+++++ .|+.|++|
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW  356 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW  356 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence            9999999999999999887654  78889999999999999999998888 88899999987  7788888 89999999


Q ss_pred             EcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCe
Q 019326          198 QAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       198 d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      |+.++++++.+. |...|.++.+...+.+++|+.|+.|++||+++. +++..+. +|...+..+.+...           
T Consensus       357 ~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~~~~-----------  424 (537)
T KOG0274|consen  357 DPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLLRDN-----------  424 (537)
T ss_pred             EhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccccccc-----------
Confidence            999999999998 889999998854489999999999999999999 8999999 99999987766554           


Q ss_pred             EEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          276 LVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       276 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +|++++.|++|++||..++.........   +...|.+++..  ...++....++..+.++.
T Consensus       425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  425 FLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             eeEeccccccEEEeecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEec
Confidence            8999999999999999988644433321   23456666665  344445555555554443

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=6.2e-31  Score=227.55  Aligned_cols=249  Identities=14%  Similarity=0.161  Sum_probs=192.7

Q ss_pred             eeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--------eeeeeeec
Q 019326           58 GGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--------LLTSVKVH  129 (343)
Q Consensus        58 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~  129 (343)
                      |+.++.|++|+..+...+..+.+| ...|.+++|+|..    +.+|++|+.|++|++||+.+..        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH-~~~V~~lafsP~~----~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGH-TSSILDLQFNPCF----SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCC-CCCEEEEEEcCCC----CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            667899999999888888889999 9999999999973    1799999999999999997532        34567889


Q ss_pred             cccEEEEEEecCCCE-EEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE
Q 019326          130 KKGVNDLAVHHSGKL-ALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       130 ~~~v~~i~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  207 (343)
                      ...|.+++|+|++.. |++++.|++|++||+++++......+...+.+++|+|+|.+++++ .|+.+++||+++++.+..
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            999999999998865 578999999999999999877776677889999999999999988 799999999999998888


Q ss_pred             ec-CCcceEEe-----eec-CCCeEEEEeCCC----cEEEEECCC-CceeEEecccccccEEEEEEEecCCCCCCCCCCe
Q 019326          208 LD-GKKRILCA-----APG-ENGVLFTGGEDR----SITAWDTNS-GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       208 ~~-~~~~i~~~-----~~~-~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      +. |.+.+.+.     .++ +++++++++.|+    .|+|||+++ .+++..+.  +......+....+.      +++.
T Consensus       205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~--ld~~~~~L~p~~D~------~tg~  276 (568)
T PTZ00420        205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS--IDNASAPLIPHYDE------STGL  276 (568)
T ss_pred             EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE--ecCCccceEEeeeC------CCCC
Confidence            77 55443322     233 557888877664    799999995 55665554  33233333222211      1233


Q ss_pred             EEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCce
Q 019326          276 LVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF  322 (343)
Q Consensus       276 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  322 (343)
                      ++++|+.|++|++|++..+.   ...+..+....++.++++.|...+
T Consensus       277 l~lsGkGD~tIr~~e~~~~~---~~~l~~~~s~~p~~g~~f~Pkr~~  320 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGS---IRKVNEYKSCSPFRSFGFLPKQIC  320 (568)
T ss_pred             EEEEEECCCeEEEEEccCCc---EEeecccccCCCccceEEcccccc
Confidence            89999999999999998652   233445566677888888886553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4e-33  Score=216.41  Aligned_cols=263  Identities=13%  Similarity=0.167  Sum_probs=224.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHE   82 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~   82 (343)
                      +++|+.||.|++||+..            ..+..+++.|.+.|..|+++.+.+++++.|.+|+.|.++. .++.++.+. 
T Consensus        82 ~aSGs~DG~VkiWnlsq------------R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~-  147 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQ------------RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGK-  147 (433)
T ss_pred             hhccccCceEEEEehhh------------hhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecc-
Confidence            68999999999999987            5677888999999999999988899999999999999874 577777765 


Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~  161 (343)
                       ..+..+.-+..+     ..+++++.  .|.|||.....++..+..-...|.++.|+|.. ..|++++.|+.|.+||+++
T Consensus       148 -s~~~gIdh~~~~-----~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~  219 (433)
T KOG0268|consen  148 -SVYLGIDHHRKN-----SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ  219 (433)
T ss_pred             -cccccccccccc-----ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence             778888777666     68888887  49999998888999999888899999999975 6778888999999999999


Q ss_pred             CceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccce-eEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEE
Q 019326          162 GRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK-LLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAW  237 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~  237 (343)
                      +.++......-..+.++|+|.+-.|+++ .|..++.||++.-. ++..+. |.+.|.++.|++ |.-+++|+.|.+|+||
T Consensus       220 ~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf  299 (433)
T KOG0268|consen  220 ASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF  299 (433)
T ss_pred             CCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEe
Confidence            9999988888889999999988788888 99999999998754 444444 788999999995 7899999999999999


Q ss_pred             ECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       238 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      ..+.+..--.+..---..|.++.|+.+.+         ++++||.|+.|++|..+...+
T Consensus       300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk---------yi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSK---------YIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             ecCCCcchhhhhHhhhheeeEEEEecccc---------EEEecCCCcceeeeecchhhh
Confidence            99877643333212345789999999988         999999999999999887643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5e-32  Score=237.28  Aligned_cols=284  Identities=17%  Similarity=0.183  Sum_probs=232.5

Q ss_pred             eeEEec--cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC------
Q 019326            2 SLIAGS--YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST------   71 (343)
Q Consensus         2 ~l~~g~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~------   71 (343)
                      ++++|+  .|+.++||+.........+....-.+.+.+...|.+.|+|+.|+  |.+||+|+.|+.|.||....      
T Consensus        27 ~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~  106 (942)
T KOG0973|consen   27 KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTV  106 (942)
T ss_pred             eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccc
Confidence            678999  89999999987643221111111234556667899999999999  99999999999999999872      


Q ss_pred             ------------CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           72 ------------SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        72 ------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                                  .+....+.+| ...|..++|+|++     .+|++++.|++|.+||..+++.+..+++|.+.|..+.|.
T Consensus       107 fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~-----~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D  180 (942)
T KOG0973|consen  107 FGSTGGAKNVESWKVVSILRGH-DSDVLDVNWSPDD-----SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD  180 (942)
T ss_pred             ccccccccccceeeEEEEEecC-CCccceeccCCCc-----cEEEEecccceEEEEccccceeeeeeecccccccceEEC
Confidence                        1466778899 9999999999998     899999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------CCcceEEEEeCCCCEEEEE--e---CCcEEEEEcccceeEEE
Q 019326          140 HSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------GKEASLIKFDGSGEKFFMV--T---EEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       140 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~---~~~i~~~d~~~~~~~~~  207 (343)
                      |-|++|++-+.|++|++|++.+.........       ......+.|+|+|.+|++.  .   ...+.|.+-.+.+.-..
T Consensus       181 P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~  260 (942)
T KOG0973|consen  181 PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD  260 (942)
T ss_pred             CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee
Confidence            9999999999999999999776544333322       2345679999999999998  2   34577887777665555


Q ss_pred             ec-CCcceEEeeec------CCC------------eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          208 LD-GKKRILCAAPG------ENG------------VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       208 ~~-~~~~i~~~~~~------~~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      +- |..++.++.|+      +..            .+++|+.|++|.||.....+++.....-....|.++.|+|++-  
T Consensus       261 LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~--  338 (942)
T KOG0973|consen  261 LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF--  338 (942)
T ss_pred             eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC--
Confidence            44 88999999997      122            6789999999999999888888877656678999999999987  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccCCC
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEKPL  300 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  300 (343)
                             .|+.+|.||+|.+..++........
T Consensus       339 -------~LfacS~DGtV~~i~Fee~ElG~~l  363 (942)
T KOG0973|consen  339 -------SLFACSLDGTVALIHFEEKELGVAL  363 (942)
T ss_pred             -------eEEEEecCCeEEEEEcchHHhCccc
Confidence                   8999999999999999886544433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-33  Score=218.73  Aligned_cols=282  Identities=15%  Similarity=0.157  Sum_probs=237.9

Q ss_pred             eEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           35 LFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      +..+.||.+.|.|++=+   -..+++|+.||.|++||+.+..+...++.| .+.|..|++...       .+++++.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-~G~V~Gi~v~~~-------~~~tvgdDKt  130 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-EGLVRGICVTQT-------SFFTVGDDKT  130 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-cCceeeEEeccc-------ceEEecCCcc
Confidence            45678999999999998   356999999999999999999999999999 999999999873       5899999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEE-E
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFM-V  189 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~  189 (343)
                      |+.|-++. .++.++.+ ...+..|.-+..+..++++|.  .|.|||.+...++.....+ ..+.++.|+|....++. +
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC  206 (433)
T ss_pred             eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence            99999876 46666653 456777777777788999886  5999999888888777776 66899999997765544 4


Q ss_pred             -eCCcEEEEEcccceeEEEecCCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCc-eeEEecccccccEEEEEEEecCC
Q 019326          190 -TEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGK-VAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       190 -~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                       +|+.|.+||++.+.+++.+.....-+.++|+|+ -.+++|++|..++.||++..+ ++.... +|...|.++.|+|.|+
T Consensus       207 ~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  207 ASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             ccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcc
Confidence             899999999999999999988888899999974 377889999999999998765 555555 9999999999999998


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccCcc
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASME  341 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  341 (343)
                               -+++||.|.+|+||.++.+.   ...+.....-..|.|+.||-|.+|+++|+.++.++.+.....|
T Consensus       286 ---------EfvsgsyDksIRIf~~~~~~---SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  286 ---------EFVSGSYDKSIRIFPVNHGH---SRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ---------hhccccccceEEEeecCCCc---chhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence                     89999999999999999773   2222223334579999999999999999999999887765443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-31  Score=223.31  Aligned_cols=263  Identities=17%  Similarity=0.226  Sum_probs=225.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++.+....|++|+...       +.   ...+..+  +...|+++.|+  |.+|++|..+|.|.|||..+.+.+..+..
T Consensus       190 ~laValg~~vylW~~~s-------~~---v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~  257 (484)
T KOG0305|consen  190 VLAVALGQSVYLWSASS-------GS---VTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG  257 (484)
T ss_pred             eEEEEecceEEEEecCC-------Cc---eEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence            44555557899999877       22   3444443  38899999999  99999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeee-eeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTS-VKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +|...|.+++|..       ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++.++++|+.|+.+.|||.
T Consensus       258 ~h~~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  258 SHASRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             CcCceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            3399999999993       4799999999999999987765554 8899999999999999999999999999999999


Q ss_pred             cCCce-eEEEEcCCcceEEEEeCC-CCEEEEE---eCCcEEEEEcccceeEEEecCCcceEEeeecCC-C-eEEE-EeCC
Q 019326          160 VRGRR-SFYHKIGKEASLIKFDGS-GEKFFMV---TEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN-G-VLFT-GGED  231 (343)
Q Consensus       160 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~-~~~d  231 (343)
                      ....+ .....+...|..++|+|- ...||++   .|+.|++||..+++.+..+.....|.++.|++. + ++.+ |..+
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCC
Confidence            65554 445667789999999995 4566666   689999999999999999999999999999943 3 3333 4567


Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +.|.||+..+.+.+..+. +|...|..++++|++.         .+++|+.|.++++|++-..
T Consensus       411 n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~---------~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGE---------TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CcEEEEeccccceeeeec-CCcceeEEEEECCCCC---------EEEEecccCcEEeccccCC
Confidence            899999999999999999 9999999999999988         9999999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-30  Score=219.15  Aligned_cols=297  Identities=19%  Similarity=0.231  Sum_probs=245.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      +++.|+.+|.+.+|++++            .+.+++++++...|+++.-+  =+.+|.|..+|+|.+++++.++.+.+|+
T Consensus       174 KIvvGs~~G~lql~Nvrt------------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk  241 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRT------------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK  241 (910)
T ss_pred             eEEEeecCCcEEEEEecc------------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence            588999999999999998            57789999999999999988  5789999999999999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .. .+.|++++|..+|+    ..+++|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|+.+++|-
T Consensus       242 ~d-~g~VtslSFrtDG~----p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  242 QD-WGRVTSLSFRTDGN----PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV  316 (910)
T ss_pred             cc-ccceeEEEeccCCC----eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence            76 79999999999994    688899999999999998877766665 6777777777777777777777777776663


Q ss_pred             ccCCce-----------------eEEE-----------------------------------------------------
Q 019326          159 LVRGRR-----------------SFYH-----------------------------------------------------  168 (343)
Q Consensus       159 ~~~~~~-----------------~~~~-----------------------------------------------------  168 (343)
                      ..++.-                 +...                                                     
T Consensus       317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p  396 (910)
T KOG1539|consen  317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP  396 (910)
T ss_pred             eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence            321100                 0000                                                     


Q ss_pred             -------------------------------------------E------cCCcceEEEEeCCCCEEEEE-eCCcEEEEE
Q 019326          169 -------------------------------------------K------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQ  198 (343)
Q Consensus       169 -------------------------------------------~------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d  198 (343)
                                                                 .      ....+.+++.++.|++.+.+ +.|.|.+|+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence                                                       0      00123567888899999999 999999999


Q ss_pred             cccceeEEEe----cCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeE---------------------------
Q 019326          199 AEDAKLLCEL----DGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAY---------------------------  246 (343)
Q Consensus       199 ~~~~~~~~~~----~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------  246 (343)
                      +++|-....+    .|..+|+.++... ++.+++++.+|.+.+||..+...+.                           
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence            9999988888    4899999999973 5689999999999999998654322                           


Q ss_pred             --------------EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccccccee
Q 019326          247 --------------CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLT  312 (343)
Q Consensus       247 --------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~  312 (343)
                                    .+. +|+..|++++|+|++.         +|++++.|++|++||+.++.     .+-.+....+..
T Consensus       557 ~I~vvD~~t~kvvR~f~-gh~nritd~~FS~Dgr---------WlisasmD~tIr~wDlpt~~-----lID~~~vd~~~~  621 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFW-GHGNRITDMTFSPDGR---------WLISASMDSTIRTWDLPTGT-----LIDGLLVDSPCT  621 (910)
T ss_pred             eEEEEEchhhhhhHHhh-ccccceeeeEeCCCCc---------EEEEeecCCcEEEEeccCcc-----eeeeEecCCcce
Confidence                          233 8999999999999988         99999999999999999885     445667778899


Q ss_pred             EEEcCCCCceeccccCCC
Q 019326          313 CLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       313 ~~~~s~~~~~~~~~~~~~  330 (343)
                      ++.+||++.|++..-.++
T Consensus       622 sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  622 SLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             eeEECCCCCEEEEEEecC
Confidence            999999999998776664

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.4e-30  Score=221.89  Aligned_cols=224  Identities=15%  Similarity=0.241  Sum_probs=182.8

Q ss_pred             EecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           37 SYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      .+.+|.++|++++|+   +++|++|+.|++|++||+.++       +.+..+.+| ...|.+++|+|.+    .++|++|
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~----~~iLaSg  144 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSA----MNVLASA  144 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCC----CCEEEEE
Confidence            367999999999998   578999999999999999765       346678888 8999999999986    2589999


Q ss_pred             eCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC--cceEEEEeCCCC
Q 019326          107 SADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK--EASLIKFDGSGE  184 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~  184 (343)
                      +.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+.......  ....+.|.+++.
T Consensus       145 s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD  224 (493)
T ss_pred             eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC
Confidence            999999999999999999999999999999999999999999999999999999998766554332  345678888888


Q ss_pred             EEEEE-----eCCcEEEEEcccce-eEEEec--CCcceEEeeec-CCCeEEEEe-CCCcEEEEECCCCceeEEecccccc
Q 019326          185 KFFMV-----TEEKVGIHQAEDAK-LLCELD--GKKRILCAAPG-ENGVLFTGG-EDRSITAWDTNSGKVAYCIEDAHSA  254 (343)
Q Consensus       185 ~~~~~-----~~~~i~~~d~~~~~-~~~~~~--~~~~i~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~h~~  254 (343)
                      .++++     .++.|++||+++.. ......  ....+....++ +++++++++ .|+.|++||+.+++.+......+..
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~  304 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE  304 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence            77765     26899999998754 333333  23344455565 456777776 5999999999999988777645667


Q ss_pred             cEEEEEEEecC
Q 019326          255 RVKGIVVLTKN  265 (343)
Q Consensus       255 ~v~~~~~~~~~  265 (343)
                      ++.++++.|..
T Consensus       305 ~~~g~~~~pk~  315 (493)
T PTZ00421        305 PHKGLCMMPKW  315 (493)
T ss_pred             CCcceEecccc
Confidence            88899998864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-31  Score=198.14  Aligned_cols=259  Identities=17%  Similarity=0.209  Sum_probs=213.2

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC-CeeeeEeccCCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST-SSSLGAIHHHESS   84 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~   84 (343)
                      .|.+.|.++..       .+  .......+. -.+.+..++|+   .+.+++++.||++++||+.. ..++..++.| ..
T Consensus        37 ~G~L~ile~~~-------~~--gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH-~~  105 (311)
T KOG0277|consen   37 NGRLFILEVTD-------PK--GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEH-KR  105 (311)
T ss_pred             CceEEEEecCC-------CC--CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhh-hh
Confidence            67888888863       11  133444443 46789999999   78899999999999999653 3678889999 99


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEEccCCc
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      +|.++.|++...    ..+++++.|++|++|+....+.+.++.+|...|....|+|. .+.+++++.|+++++||++...
T Consensus       106 EV~Svdwn~~~r----~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g  181 (311)
T KOG0277|consen  106 EVYSVDWNTVRR----RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG  181 (311)
T ss_pred             heEEeccccccc----eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence            999999998873    67888899999999999999999999999999999999995 5899999999999999998654


Q ss_pred             -eeEEEEcCCcceEEEEeCCCC-EEEEE-eCCcEEEEEcccce-eEEEec-CCcceEEeeecC--CCeEEEEeCCCcEEE
Q 019326          164 -RSFYHKIGKEASLIKFDGSGE-KFFMV-TEEKVGIHQAEDAK-LLCELD-GKKRILCAAPGE--NGVLFTGGEDRSITA  236 (343)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~~~--~~~l~~~~~dg~i~i  236 (343)
                       ......+..++.++.|+.... .++++ .|+.|+.||+++-+ ++..+. |.-.|..+.+++  ..+|++++.|-+++|
T Consensus       182 k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  182 KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence             444444556899999988655 55566 89999999999855 445554 888999999996  469999999999999


Q ss_pred             EECCCCce-eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          237 WDTNSGKV-AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       237 ~d~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      ||...+.. +.+.. .|+.-+.++.|+.....        ++|+.+.|+.++||+.
T Consensus       262 w~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~--------~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  262 WDPERQDSAIETVD-HHTEFVCGLDWSLFDPG--------QVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccchhhhhhhh-ccceEEeccccccccCc--------eeeecccccceeeecc
Confidence            99986554 44455 89999999999987442        8999999999999985

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.9e-30  Score=224.60  Aligned_cols=243  Identities=12%  Similarity=0.133  Sum_probs=186.1

Q ss_pred             EeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe--------
Q 019326            5 AGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS--------   73 (343)
Q Consensus         5 ~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~--------   73 (343)
                      .|+.++.|++|+...            ..++..+.+|.++|.+++|+   +++|++|+.||.|++||+.++.        
T Consensus        49 gGG~~gvI~L~~~~r------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~  116 (568)
T PTZ00420         49 GGGLIGAIRLENQMR------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD  116 (568)
T ss_pred             CCCceeEEEeeecCC------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc
Confidence            356677788887654            24567788999999999998   5799999999999999997642        


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCe
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                      .+..+.+| ...|.+++|+|++.    ..|++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.
T Consensus       117 p~~~L~gH-~~~V~sVaf~P~g~----~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~  190 (568)
T PTZ00420        117 PQCILKGH-KKKISIIDWNPMNY----YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH  190 (568)
T ss_pred             ceEEeecC-CCcEEEEEECCCCC----eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE
Confidence            33467788 89999999999872    356799999999999999988777776 6678999999999999999999999


Q ss_pred             EEEEEccCCceeEEEEcC-CcceE-----EEEeCCCCEEEEE-eC----CcEEEEEccc-ceeEEEecCCcceEE---ee
Q 019326          154 LAMVNLVRGRRSFYHKIG-KEASL-----IKFDGSGEKFFMV-TE----EKVGIHQAED-AKLLCELDGKKRILC---AA  218 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~-~~----~~i~~~d~~~-~~~~~~~~~~~~i~~---~~  218 (343)
                      |++||+++++.+...... ..+..     ..|++++.+++++ .+    +.|++||+++ .+++..+.+......   ..
T Consensus       191 IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~  270 (568)
T PTZ00420        191 MHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY  270 (568)
T ss_pred             EEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence            999999999877655433 32222     3345888888886 44    3799999995 566666554333222   22


Q ss_pred             ec-CCCeEEEEeCCCcEEEEECCCCceeEEec-ccccccEEEEEEEecCC
Q 019326          219 PG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKND  266 (343)
Q Consensus       219 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~  266 (343)
                      .. .+.++++|+.|+.|++|++..+. +..+. ..+..++.+++|.|...
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            22 35688899999999999998764 33332 13667889999999753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-30  Score=193.60  Aligned_cols=253  Identities=15%  Similarity=0.221  Sum_probs=221.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      +|++|+.|+.+++|+++.       .   .+......++|.+.|-.++|+   ++.|++++.|.+|++||..++++...+
T Consensus        34 ~lasgs~dktv~v~n~e~-------~---r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i  103 (313)
T KOG1407|consen   34 KLASGSFDKTVSVWNLER-------D---RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI  103 (313)
T ss_pred             eeeecccCCceEEEEecc-------h---hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence            689999999999999986       2   244445667999999999998   789999999999999999999999988


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ...  ..=.-+.|+|++     +++++++.|..|...|.++.+.+...+ ....+.-++|+.++.+++.....|.|.|..
T Consensus       104 ~~~--~eni~i~wsp~g-----~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen  104 ETK--GENINITWSPDG-----EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILS  175 (313)
T ss_pred             ecc--CcceEEEEcCCC-----CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence            766  444458899999     899999999999999999887776665 455778899998888888888889999999


Q ss_pred             ccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcE
Q 019326          159 LVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSI  234 (343)
Q Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i  234 (343)
                      ....+++..+ .++....|+.|+|+|++|+++ .|..+.+||+...-+.+.+. +.-+|..+.|+ ++++|++|++|..|
T Consensus       176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI  255 (313)
T ss_pred             ccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence            8877766544 455777889999999999999 99999999999998888887 88999999999 78999999999999


Q ss_pred             EEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          235 TAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      -|=++++|..+.+++  +.++...++|+|...         +||-++.|
T Consensus       256 DIA~vetGd~~~eI~--~~~~t~tVAWHPk~~---------LLAyA~dd  293 (313)
T KOG1407|consen  256 DIAEVETGDRVWEIP--CEGPTFTVAWHPKRP---------LLAYACDD  293 (313)
T ss_pred             EeEecccCCeEEEee--ccCCceeEEecCCCc---------eeeEEecC
Confidence            999999999999998  999999999999987         88887765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-31  Score=195.75  Aligned_cols=236  Identities=18%  Similarity=0.187  Sum_probs=210.9

Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      .+++| ..+++.+.++.++     .+|++++.|.+..+|-..+++.+.++.+|.+.|++++.+.+.+++++|+.|.++++
T Consensus         5 ~l~GH-ERplTqiKyN~eG-----DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGH-ERPLTQIKYNREG-----DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccC-ccccceEEecCCC-----cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            45778 9999999999999     89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeC------CcEEEEEccc-------ceeEEEec-CCcceEEeeecC-
Q 019326          157 VNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTE------EKVGIHQAED-------AKLLCELD-GKKRILCAAPGE-  221 (343)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~-------~~~~~~~~-~~~~i~~~~~~~-  221 (343)
                      ||+++|+++...+.+.++..+.|++++++++.+.|      +.|.++|++.       .++...+. +...++.+.|.+ 
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            99999999999999999999999999999988843      4588999883       44455555 678899999984 


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCc
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP  301 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  301 (343)
                      +..+++|..||.|.+||.++++.+..-...|...|+.|.++++..         +++++|.|.+-++||+.+..     .
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~-----v  224 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLE-----V  224 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeecccee-----e
Confidence            789999999999999999998766555448999999999999998         99999999999999999864     4


Q ss_pred             ccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          302 LAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       302 ~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                      +..+....+|++.+++|...+++.+.+++.-
T Consensus       225 ~Kty~te~PvN~aaisP~~d~VilgGGqeA~  255 (327)
T KOG0643|consen  225 LKTYTTERPVNTAAISPLLDHVILGGGQEAM  255 (327)
T ss_pred             EEEeeecccccceecccccceEEecCCceee
Confidence            4567778899999999999999999888743

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-31  Score=212.13  Aligned_cols=270  Identities=15%  Similarity=0.141  Sum_probs=225.5

Q ss_pred             CCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           41 HLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        41 h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      ..++|++++|+   +.-+|+.+. -.+.+|+..+......+... ...+.++.|..+|     ++|++|+..|.|++||.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG-----~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDG-----RLLAAGDESGHVKVFDM   97 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhh-ccceeEEEeecCC-----eEEEccCCcCcEEEecc
Confidence            35789999999   344555443 46999999988877777777 7899999999999     89999999999999998


Q ss_pred             CCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCcee-EEEEcCCcceEEEEeCCCC-EEEEE-eCCc
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRS-FYHKIGKEASLIKFDGSGE-KFFMV-TEEK  193 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~  193 (343)
                      .+...++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.... ....+..-|.+.+++|... .++++ .||.
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence            8877889999999999999999965 67888888999999999988753 2334567899999999776 55566 8999


Q ss_pred             EEEEEcccc-eeEEEecCCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCC
Q 019326          194 VGIHQAEDA-KLLCELDGKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       194 i~~~d~~~~-~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                      |++||++.. ..+.++.|..+|..+.+-++ ..+++++ ...|++||+.+|..+......|...|+|+.+..++.     
T Consensus       178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-----  251 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-----  251 (487)
T ss_pred             EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-----
Confidence            999999987 78889999999999999865 6666665 567999999977655444425999999999999876     


Q ss_pred             CCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          272 ENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                          .|+|++-|+.+++||+.+-+     .+....-.++|.+++.+|++..++.|++++.+
T Consensus       252 ----rLlS~sLD~~VKVfd~t~~K-----vv~s~~~~~pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  252 ----RLLSGSLDRHVKVFDTTNYK-----VVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             ----eEeecccccceEEEEccceE-----EEEeeecccceeeEEecCCCceEEEeccccee
Confidence                99999999999999987654     44556667889999999999999999999844

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=205.22  Aligned_cols=277  Identities=16%  Similarity=0.206  Sum_probs=236.2

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec--------cCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH--------HHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +....+.|..|+  |++|++|+.||.|.+||..+|+....++        -+ ..+|.|+.|+.+.     ..+++|+.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMm-d~aVlci~FSRDs-----EMlAsGsqD  284 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMM-DDAVLCISFSRDS-----EMLASGSQD  284 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeec-ccceEEEeecccH-----HHhhccCcC
Confidence            456678899999  9999999999999999999997655443        34 6899999999998     899999999


Q ss_pred             CeEEEEECCCcceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEE
Q 019326          110 GFVSIFDADPFVLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFF  187 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (343)
                      |.|++|.+.++.+++.|. .|...|+++.|+.|+..+++++.|.++++.-+.+|+++..+.. ...++...|.++|.+++
T Consensus       285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII  364 (508)
T ss_pred             CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence            999999999999999997 8999999999999999999999999999999999998876654 46788999999999999


Q ss_pred             EE-eCCcEEEEEcccceeEEEec---CCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccc--cccEEEE
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAH--SARVKGI  259 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h--~~~v~~~  259 (343)
                      ++ .|+++++|+..+.+++.+++   ...+|+++..-+  ...++++...++|++.++. |+.++.+..+.  .+..-+.
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence            99 99999999999999998887   456677777654  4588899999999999987 88888887443  2344455


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      ..+|.+.         ++++.++|+.++-|.+.+++.+...++.+.    .+..++-+|...+++.=++|+..+.+.
T Consensus       444 ~lSpkGe---------wiYcigED~vlYCF~~~sG~LE~tl~VhEk----dvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  444 ILSPKGE---------WIYCIGEDGVLYCFSVLSGKLERTLPVHEK----DVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EecCCCc---------EEEEEccCcEEEEEEeecCceeeeeecccc----cccccccCcccchhhhhcccchhhhcC
Confidence            6788887         999999999999999999976666655433    366788889888998888888877654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-29  Score=191.10  Aligned_cols=261  Identities=16%  Similarity=0.205  Sum_probs=214.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC--CCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT--DDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~--dg~i~iwd~~~~~~~~~   77 (343)
                      .|++.+.|..|++||...            .+++.++..++-.|..++|.  .+.++.++.  |.+||..++.+.+.++.
T Consensus        28 ~litss~dDsl~LYd~~~------------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY   95 (311)
T KOG1446|consen   28 LLITSSEDDSLRLYDSLS------------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY   95 (311)
T ss_pred             EEEEecCCCeEEEEEcCC------------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence            477888999999999987            45666666777788888887  667776666  88999999999999999


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      |.+| ...|.+|+.+|-+     ..+++++.|++|++||++..++...+.....+  .++|.|+|-++|++...+.|++|
T Consensus        96 F~GH-~~~V~sL~~sP~~-----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   96 FPGH-KKRVNSLSVSPKD-----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             cCCC-CceEEEEEecCCC-----CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEE
Confidence            9999 9999999999999     89999999999999999987877777644444  47899999999999888899999


Q ss_pred             EccCCce--eEEEEc----CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC---cc-eEEeeec-CCCeE
Q 019326          158 NLVRGRR--SFYHKI----GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK---KR-ILCAAPG-ENGVL  225 (343)
Q Consensus       158 d~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~-i~~~~~~-~~~~l  225 (343)
                      |++.-..  ...+..    ..+...+.|+|+|++++.+ ..+.+.+.|.-+|..+..+...   .. ....+|. +++++
T Consensus       168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv  247 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV  247 (311)
T ss_pred             EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence            9987532  222222    3567789999999999999 8899999999999988888721   11 2355565 56899


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++|+.||+|.+|+++++..+..+...+..++.++.|+|...         +++|+  +..+.+|=...
T Consensus       248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~---------mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA---------MFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee---------eeeec--CceEEEEeccc
Confidence            99999999999999999999999944899999999999854         55555  56789997664

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2.7e-29  Score=216.39  Aligned_cols=252  Identities=14%  Similarity=0.155  Sum_probs=184.3

Q ss_pred             EecCceEEEeeCCCeEEEEEcCCCeee-------------eEeccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCCeEEE
Q 019326           49 AVSGTAAASGGTDDTIHLYDLSTSSSL-------------GAIHHHESSSVTSLAFYT-PQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        49 ~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +|++..+++++.+.....|+...+..+             ..+.+| .+.|.+++|+| ++     ++|++|+.|++|++
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH-~~~V~~v~fsP~d~-----~~LaSgS~DgtIkI  102 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQ-EGPIIDVAFNPFDP-----QKLFTASEDGTIMG  102 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCC-CCCEEEEEEcCCCC-----CEEEEEeCCCEEEE
Confidence            344455666666666666665433221             246678 89999999999 55     79999999999999


Q ss_pred             EECCCc-------ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCE
Q 019326          115 FDADPF-------VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEK  185 (343)
Q Consensus       115 wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~  185 (343)
                      ||+.+.       +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++...... +...+.+++|+|++..
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l  182 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL  182 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence            999654       3567788999999999999985 799999999999999999988766554 4577999999999999


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEec-CCcc-eEEeeec-CCCeEEEEe----CCCcEEEEECCCCc-eeEEecccccccE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELD-GKKR-ILCAAPG-ENGVLFTGG----EDRSITAWDTNSGK-VAYCIEDAHSARV  256 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~-i~~~~~~-~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~h~~~v  256 (343)
                      ++++ .|+.|++||+++++.+..+. |... ...+.|. +++.+++++    .|+.|++||+++.. ++......+...+
T Consensus       183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~  262 (493)
T PTZ00421        183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL  262 (493)
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence            9999 89999999999999888776 4433 3345555 445665543    47999999998765 3333331233445


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEc-CCCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASAS-SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      ....|++++.         +|++++ .|+.|++||+.++..   .....+....++..+++.|
T Consensus       263 ~~~~~d~d~~---------~L~lggkgDg~Iriwdl~~~~~---~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        263 FIPFFDEDTN---------LLYIGSKGEGNIRCFELMNERL---TFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             EEEEEcCCCC---------EEEEEEeCCCeEEEEEeeCCce---EEEeeccCCCCCcceEecc
Confidence            5556777766         888877 599999999997642   1122233333455555544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=4.9e-31  Score=201.08  Aligned_cols=276  Identities=17%  Similarity=0.234  Sum_probs=223.5

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCC-----CCCcc-eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYS-----SDQKT-LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS   72 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~-----~~~~~-~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~   72 (343)
                      +.+++|+.|-.|+|.|++......     .++.+ .....++++-.|..+|+++.|+  ...|++|+.|++|+++|....
T Consensus       125 ~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~  204 (430)
T KOG0640|consen  125 SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT  204 (430)
T ss_pred             cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccH
Confidence            458999999999999998322111     00111 1123567888999999999999  789999999999999999865


Q ss_pred             eee---eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee---eeccccEEEEEEecCCCEEE
Q 019326           73 SSL---GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV---KVHKKGVNDLAVHHSGKLAL  146 (343)
Q Consensus        73 ~~~---~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~  146 (343)
                      ...   +.|+.  ..+|.++.|+|.|     .+|+.|....++++||+.+.++...-   ..|.+.|+++.+++.+++.+
T Consensus       205 saKrA~K~~qd--~~~vrsiSfHPsG-----efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv  277 (430)
T KOG0640|consen  205 SAKRAFKVFQD--TEPVRSISFHPSG-----EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV  277 (430)
T ss_pred             HHHHHHHHhhc--cceeeeEeecCCC-----ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence            332   33333  4789999999999     89999999999999999998876554   35889999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeEEEEc---CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcc------eEE
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYHKI---GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKR------ILC  216 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~------i~~  216 (343)
                      +++.||.|++||--+++++..+..   +..|.+..|..+++++++. .|..+++|.+.+++.+..+.+.+.      -+.
T Consensus       278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq  357 (430)
T KOG0640|consen  278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ  357 (430)
T ss_pred             EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence            999999999999988888765543   3568889999999999999 999999999999999998874321      223


Q ss_pred             eeec-CCCeEEEEe-CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          217 AAPG-ENGVLFTGG-EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       217 ~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      ..|. ...+++.-. ..+.+.-||.++...+..+..+|.+.+..+.-+|.+.         -++++|.|-++|+|--+
T Consensus       358 AvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p---------~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  358 AVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP---------AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC---------ceeeecccceeeeeeec
Confidence            3344 345555544 4578999999999888888779999999999999988         89999999999999654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=7.6e-30  Score=202.59  Aligned_cols=275  Identities=17%  Similarity=0.183  Sum_probs=234.9

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ..++++...  .+.+++|+.|..+.++|..+++.+..+.+| ...|+.+.++++.     ..+++++.|..|++|.....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh-~kki~~v~~~~~~-----~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGH-TKKITSVKFHKDL-----DTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCc-ceEEEEEEeccch-----hheeecCCcceEEeeccccc
Confidence            456777766  389999999999999999999999999999 9999999999998     79999999999999999887


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEE-eCCcEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMV-TEEKVGI  196 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~~  196 (343)
                      ........|..+|+.+..+|.|.||++++.|++..+.|++++..+......   -...+.+|+|||..|.++ .|+.+++
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            788888899999999999999999999999999999999999987766654   347889999999999999 9999999


Q ss_pred             EEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCC
Q 019326          197 HQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       197 ~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  274 (343)
                      ||+.++..+..|+ |.++|..+.|+ +|-+|+++++|+.|++||++..+...++.......+.++.|...+.        
T Consensus       374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt--------  445 (506)
T KOG0289|consen  374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT--------  445 (506)
T ss_pred             EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC--------
Confidence            9999999998888 88999999999 5668999999999999999999888888744555799999999988        


Q ss_pred             eEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          275 YLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       275 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                       +|+.++.|=.|++++-.+..  .........+.+..+++.|....++++.++.+...+.
T Consensus       446 -~L~~~g~~l~Vy~~~k~~k~--W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  446 -YLGIAGSDLQVYICKKKTKS--WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             -eEEeecceeEEEEEeccccc--ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence             99999888666666543321  1111112233457889999999999998888776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=6.7e-30  Score=202.88  Aligned_cols=262  Identities=18%  Similarity=0.167  Sum_probs=226.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .+++|+.|..+.++|...            .+.+..++||...|+.+.|+  ...+++++.|..|+||............
T Consensus       233 ~ilTGG~d~~av~~d~~s------------~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~  300 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPS------------NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR  300 (506)
T ss_pred             cceecCCCCceEEEecch------------hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc
Confidence            467899999999999887            46677889999999999999  6789999999999999999888888888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec--cccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH--KKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      .| ..+|+.+..+|.+     .||++++.|++..+.|++++.++......  .-.+++.+|+|||..|.+|..|+.+++|
T Consensus       301 ~h-~~~V~~ls~h~tg-----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  301 PH-EEPVTGLSLHPTG-----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             cc-cccceeeeeccCC-----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence            99 9999999999999     89999999999999999999888776642  2368999999999999999999999999


Q ss_pred             EccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC--CcceEEeeec-CCCeEEEEeCCC
Q 019326          158 NLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG--KKRILCAAPG-ENGVLFTGGEDR  232 (343)
Q Consensus       158 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~--~~~i~~~~~~-~~~~l~~~~~dg  232 (343)
                      |+..+..+..+. +..+|..++|+.+|.+++++ .|+.|++||++..+..+++..  ..++.++.|. .+.+|++++.|=
T Consensus       375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence            999887554443 55889999999999999999 778899999999998888873  3469999998 467999988777


Q ss_pred             cEEEEECC--CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          233 SITAWDTN--SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       233 ~i~i~d~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      .|++++-.  +...+..+. .|.+..+++.|.....         +++++|.|..++++.+
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~aq---------~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHAQ---------YLASTSMDAILRLYAL  505 (506)
T ss_pred             EEEEEecccccceeeehhh-hcccccceeeecccce---------EEeeccchhheEEeec
Confidence            77777633  456777777 7888999999988877         9999999999988764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=3e-29  Score=191.02  Aligned_cols=265  Identities=17%  Similarity=0.178  Sum_probs=210.6

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      ....|.+|.|+  ++.|+++++||++++||.........++ | ..++.+++|.+..      .+++|+.||.|+.+|+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~-~~plL~c~F~d~~------~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-H-GAPLLDCAFADES------TIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-c-CCceeeeeccCCc------eEEEeccCceEEEEEec
Confidence            46789999999  7788888899999999999886666665 4 6999999999865      89999999999999998


Q ss_pred             CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          119 PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       119 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      +++. ..+..|..+|.+|.+.+....+++|+.|++|++||.+.............|.++.  -.++.|+++ .+..+.+|
T Consensus        84 ~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~--v~g~~LvVg~~~r~v~iy  160 (323)
T KOG1036|consen   84 TGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD--VSGNRLVVGTSDRKVLIY  160 (323)
T ss_pred             CCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe--ccCCEEEEeecCceEEEE
Confidence            8654 4455699999999999988899999999999999999866655666666555554  467788886 99999999


Q ss_pred             EcccceeEEEec---CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCC----ceeEEeccccc---------ccEEEEE
Q 019326          198 QAEDAKLLCELD---GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSG----KVAYCIEDAHS---------ARVKGIV  260 (343)
Q Consensus       198 d~~~~~~~~~~~---~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~h~---------~~v~~~~  260 (343)
                      |+++.....+..   ....+.|+++.+ +.-+++++-||.|.+=.+...    +.-..++ .|.         -+|++|+
T Consensus       161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~  239 (323)
T KOG1036|consen  161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIA  239 (323)
T ss_pred             EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeE
Confidence            999876655332   556788888775 456778889999988666544    2334444 453         4899999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      |+|-..         .|+||+.||.|.+||+.+.++..  .+..+  ...|..++|+.+|..++.+..-.
T Consensus       240 Fhp~~~---------tfaTgGsDG~V~~Wd~~~rKrl~--q~~~~--~~SI~slsfs~dG~~LAia~sy~  296 (323)
T KOG1036|consen  240 FHPIHG---------TFATGGSDGIVNIWDLFNRKRLK--QLAKY--ETSISSLSFSMDGSLLAIASSYQ  296 (323)
T ss_pred             eccccc---------eEEecCCCceEEEccCcchhhhh--hccCC--CCceEEEEeccCCCeEEEEechh
Confidence            999977         89999999999999999876433  22223  34599999999999998876544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-30  Score=214.97  Aligned_cols=269  Identities=15%  Similarity=0.241  Sum_probs=222.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeE-EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC--eeeeE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLT-QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS--SSLGA   77 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~   77 (343)
                      |++|+.||.|++|+...       .....-. ...+++.|.++|+.++..  ++.|++++.|-+|++|+...+  -+...
T Consensus        40 LfTgGRDg~i~~W~~~~-------d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st  112 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQ-------DSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST  112 (735)
T ss_pred             EEecCCCceEEEecccc-------ccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence            89999999999999876       2222112 467788899999999987  789999999999999999887  57778


Q ss_pred             eccCCCCCeEEEEE-eCCCCCCCCceEEEeeCCCeEEEEECCCc--ceeee--------ee-eccccEEEEEEecCCCEE
Q 019326           78 IHHHESSSVTSLAF-YTPQNLSVPRNLFSTSADGFVSIFDADPF--VLLTS--------VK-VHKKGVNDLAVHHSGKLA  145 (343)
Q Consensus        78 ~~~~~~~~v~~l~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--------~~-~~~~~v~~i~~~~~~~~l  145 (343)
                      +..| ...|.|+++ .++.     .++++|+.|+.|.+||+.++  +.+.+        +. ++...|.+++.++.|..+
T Consensus       113 ir~H-~DYVkcla~~ak~~-----~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  113 IRTH-KDYVKCLAYIAKNN-----ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             hhcc-cchheeeeecccCc-----eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence            8889 999999999 6665     79999999999999999876  22222        22 678899999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCC
Q 019326          146 LTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGEN  222 (343)
Q Consensus       146 ~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~  222 (343)
                      ++|+.++.+++||.++.+.+... .+...|..+..+++|..++++ +|+.|++||+...+++.++. |...+.++..++.
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS  266 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence            99999999999999998866544 556789999999999999999 99999999999999999987 8888999988754


Q ss_pred             -CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          223 -GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       223 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                       ..+++|+.||.|..=|+++......+- ....+|..+..+...+         -+.+++.|+.|+-|..+..
T Consensus       267 f~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~---------~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  267 FTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDN---------SVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             cceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccC---------CceeeeccccceecCCccc
Confidence             699999999999999999854333332 3566777777775554         4577778899999977643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-30  Score=191.47  Aligned_cols=222  Identities=18%  Similarity=0.207  Sum_probs=186.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      ++++++.||++++||+..           +-.|++.++.|...|.++.|+   +..+++++.|++|++|+...++.+.++
T Consensus        75 ~~~~a~GDGSLrl~d~~~-----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTM-----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             eEEEEecCceEEEeccCC-----------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence            578999999999999654           245888999999999999999   778888999999999999999999999


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMV  157 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~w  157 (343)
                      .+| ...|....|+|..    ++++++++.|+++++||++..-....+..|...+.++.|+. +.+.+++|+.|+.|+.|
T Consensus       144 ~gh-~~~Iy~a~~sp~~----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  144 NGH-NSCIYQAAFSPHI----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             cCC-ccEEEEEecCCCC----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            999 9999999999988    58999999999999999965433444888999999999987 45789999999999999


Q ss_pred             EccCCceeE-E-EEcCCcceEEEEeCCCC-EEEEE-eCCcEEEEEcccce-eEEEec-CCcceEEeeec--CCCeEEEEe
Q 019326          158 NLVRGRRSF-Y-HKIGKEASLIKFDGSGE-KFFMV-TEEKVGIHQAEDAK-LLCELD-GKKRILCAAPG--ENGVLFTGG  229 (343)
Q Consensus       158 d~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~~--~~~~l~~~~  229 (343)
                      |++.-+... . ..+.-.|..++|+|... .++++ .|-++++||...+. .+.+.. |..-+..+.|+  ...++++++
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence            999876432 2 22345688899999765 45555 89999999998543 444555 55667778888  578999999


Q ss_pred             CCCcEEEEEC
Q 019326          230 EDRSITAWDT  239 (343)
Q Consensus       230 ~dg~i~i~d~  239 (343)
                      .|+.++||+.
T Consensus       299 WDe~l~Vw~p  308 (311)
T KOG0277|consen  299 WDELLYVWNP  308 (311)
T ss_pred             cccceeeecc
Confidence            9999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=3.7e-29  Score=209.44  Aligned_cols=258  Identities=18%  Similarity=0.215  Sum_probs=218.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEec---CceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVS---GTAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      .+++++.||++++|+-..          ........+.+|.+.|.+ ++|.   +..+++|+.|.+|.+|...+..++..
T Consensus        27 ~i~s~sRd~t~~vw~~~~----------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~   96 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKG----------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT   96 (745)
T ss_pred             EEeecCCCCceeeeeccC----------cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence            378899999999999754          224455667788888887 7776   46799999999999999999999999


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      +.+| ...|.+++...++      .+++|+.|.++++|...  ++...+++|...|++++..|.+ .+++|+.|.+|++|
T Consensus        97 LkgH-~snVC~ls~~~~~------~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW  166 (745)
T KOG0301|consen   97 LKGH-KSNVCSLSIGEDG------TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW  166 (745)
T ss_pred             hhcc-ccceeeeecCCcC------ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence            9999 9999999988777      59999999999999764  5677799999999999999987 89999999999999


Q ss_pred             EccCCceeEEE-EcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeee-cCCCeEEEEeCCCcEE
Q 019326          158 NLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAP-GENGVLFTGGEDRSIT  235 (343)
Q Consensus       158 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~dg~i~  235 (343)
                      .-  ++.+..+ .+..-|..+++-+++.++-++.||.|+.|++..........|..-+.++.. .+++.++++++|++++
T Consensus       167 k~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  167 KG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             cC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence            86  3433333 356778999999988888777999999999955555566669999999994 4788999999999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +|+..  ++.+.+. .....|+++.+.++++          +++|++||.||||..+..
T Consensus       245 iW~~~--e~~q~I~-lPttsiWsa~~L~NgD----------Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  245 IWKKD--ECVQVIT-LPTTSIWSAKVLLNGD----------IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EeecC--ceEEEEe-cCccceEEEEEeeCCC----------EEEeccCceEEEEEeccc
Confidence            99976  7778887 4455999999999986          999999999999988743

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.9e-29  Score=208.29  Aligned_cols=269  Identities=19%  Similarity=0.183  Sum_probs=226.4

Q ss_pred             EEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee
Q 019326           48 VAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV  126 (343)
Q Consensus        48 l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  126 (343)
                      +.|+ .+.|++|. ...|.+|+..+++.......+ ...|+++.|++++     .+|++|..+|.|.|||..+.+.+..+
T Consensus       183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G-----~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDG-----SHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             hhcccCCeEEEEe-cceEEEEecCCCceEEeEecC-CCceEEEEECCCC-----CEEEEeecCCeEEEEehhhccccccc
Confidence            3455 56777766 457999999999877666666 7999999999999     89999999999999999999999999


Q ss_pred             ee-ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE--EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc
Q 019326          127 KV-HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY--HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA  202 (343)
Q Consensus       127 ~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~  202 (343)
                      .+ |...|.+++|.  +..+.+|+.++.|..+|++..+....  ..+...|..++|++++.+++.+ .|+.+.|||....
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence            98 99999999998  56899999999999999998875443  4466889999999999999999 9999999999777


Q ss_pred             eeEEEec-CCcceEEeeecC--CCeEEEEe--CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          203 KLLCELD-GKKRILCAAPGE--NGVLFTGG--EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       203 ~~~~~~~-~~~~i~~~~~~~--~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      .+...+. |...|.+++|+|  .++||+|+  .|++|++||..+++.+..+.  -...|..|.|++...+        ++
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kE--------i~  403 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKE--------LL  403 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCE--------EE
Confidence            7766665 999999999994  67899875  59999999999999999987  7789999999999862        33


Q ss_pred             EE-EcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          278 AS-ASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       278 ~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      .+ |-.++.|.||++.+.+...    ....+..+|..+++|||+..++.+.+|+.++.++.-.
T Consensus       404 sthG~s~n~i~lw~~ps~~~~~----~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  404 STHGYSENQITLWKYPSMKLVA----ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EecCCCCCcEEEEeccccceee----eecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            33 3456789999999853222    2235567899999999999999999999988766533

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=192.14  Aligned_cols=274  Identities=15%  Similarity=0.195  Sum_probs=228.4

Q ss_pred             eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           30 LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      ..+..+..+.||.+.|..++..  ...+.+++.|.+.+||.+++++++..+.+| .+.|+++.|++.+     .++++++
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsikfh~s~-----~L~lTaS  209 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIKFHNSG-----LLLLTAS  209 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEEecccc-----ceEEEcc
Confidence            3566778889999999999987  568999999999999999999999999999 9999999999998     7999999


Q ss_pred             CCCeEEEEECC------C----------------------------------cceeeeeeeccccEEEEEEecCCCEEEE
Q 019326          108 ADGFVSIFDAD------P----------------------------------FVLLTSVKVHKKGVNDLAVHHSGKLALT  147 (343)
Q Consensus       108 ~dg~i~iwd~~------~----------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~  147 (343)
                      .|++..||...      .                                  ..++..+.+|.+.|.+..|...|+.+++
T Consensus       210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT  289 (481)
T KOG0300|consen  210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT  289 (481)
T ss_pred             CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence            99999999620      0                                  0235567789999999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc-eeEEEec-CCcceEEeeecCCC
Q 019326          148 VGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA-KLLCELD-GKKRILCAAPGENG  223 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~-~~~~~~~-~~~~i~~~~~~~~~  223 (343)
                      ++.|.+..+||++++..+.... +......++-+|..++++++ .|.+.++||++.. ..+..|+ |...|++..|..+.
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC
Confidence            9999999999999999877654 45778889999999999999 8999999999843 3345555 88899999998888


Q ss_pred             eEEEEeCCCcEEEEECCCCc-eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc
Q 019326          224 VLFTGGEDRSITAWDTNSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  302 (343)
                      .+++|++|.+|++||+++.. ++.++.  ...+++.++++...+         .|+.--.+..|++||++..........
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~---------iIAiPhDNRqvRlfDlnG~RlaRlPrt  438 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHP---------IIAIPHDNRQVRLFDLNGNRLARLPRT  438 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCc---------eEEeccCCceEEEEecCCCccccCCcc
Confidence            99999999999999999864 677777  778999999998877         788888888999999987533222222


Q ss_pred             cccccccceeEEEcCCCC
Q 019326          303 AEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       303 ~~~~~~~~i~~~~~s~~~  320 (343)
                      ..-.+..-|.|.+|..+.
T Consensus       439 sRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  439 SRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             cccccceeeeeeeccccC
Confidence            223344568999997653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.7e-29  Score=204.79  Aligned_cols=270  Identities=16%  Similarity=0.157  Sum_probs=208.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee---
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG---   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~---   76 (343)
                      ||++|+.|..|++||+..+..     ....++.+.-  .....|++++|+  ++.|++.+.....+++|-+..+...   
T Consensus       181 R~~sGs~Dy~v~~wDf~gMda-----s~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K  253 (641)
T KOG0772|consen  181 RFVSGSLDYTVKFWDFQGMDA-----SMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSK  253 (641)
T ss_pred             eeeeccccceEEEEecccccc-----cchhhhccCc--ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeec
Confidence            799999999999999986321     1111222322  345589999999  8888888888899999976433222   


Q ss_pred             ---------EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-eeeeee-----eccccEEEEEEecC
Q 019326           77 ---------AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVK-----VHKKGVNDLAVHHS  141 (343)
Q Consensus        77 ---------~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-----~~~~~v~~i~~~~~  141 (343)
                               ..++| ...++|.+|+|...    ..+++++.||++++||+...+ ..+.++     +..-+++.++|+++
T Consensus       254 GDQYI~Dm~nTKGH-ia~lt~g~whP~~k----~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  254 GDQYIRDMYNTKGH-IAELTCGCWHPDNK----EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD  328 (641)
T ss_pred             cchhhhhhhccCCc-eeeeeccccccCcc----cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence                     22577 89999999999984    789999999999999996543 344443     22347899999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCcee--E--EEEcC--CcceEEEEeCCCCEEEEE-eCCcEEEEEccccee-EEEe---cC
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRS--F--YHKIG--KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL-LCEL---DG  210 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~--~--~~~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~---~~  210 (343)
                      ++.|++|+.||.|.+|+......-  .  ...+.  ..++++.|+++|++|++- .|+.+++||+++.+. +...   ..
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t  408 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT  408 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence            999999999999999998544321  1  12222  479999999999999999 999999999998653 3332   25


Q ss_pred             CcceEEeeecC-CCeEEEEeC------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          211 KKRILCAAPGE-NGVLFTGGE------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       211 ~~~i~~~~~~~-~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      ..+-+.++|++ ..++++|+.      .|.+.+||..+.+.++.+. -....|..+.|+|.-+         .|..|+.|
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~~aSvv~~~WhpkLN---------Qi~~gsgd  478 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-ISTASVVRCLWHPKLN---------QIFAGSGD  478 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CCCceEEEEeecchhh---------heeeecCC
Confidence            56678889985 467777763      5789999999999999998 6688899999999987         89999999


Q ss_pred             CcEEEE-eccC
Q 019326          284 GVICVW-DVRM  293 (343)
Q Consensus       284 g~i~vw-d~~~  293 (343)
                      |+++|+ |-..
T Consensus       479 G~~~vyYdp~~  489 (641)
T KOG0772|consen  479 GTAHVYYDPNE  489 (641)
T ss_pred             CceEEEECccc
Confidence            999986 5544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.3e-29  Score=190.55  Aligned_cols=281  Identities=17%  Similarity=0.263  Sum_probs=226.0

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC------------------eeeeEeccCCCCCeEEEEEeCCC
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS------------------SSLGAIHHHESSSVTSLAFYTPQ   95 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~~v~~l~~~~~~   95 (343)
                      ..+..|++++.+-+|+  |.++|+|+.|..|+|.|++..                  -.++++..| ..+|+++.|+|..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH-~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH-VDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc-cCcccceeecchh
Confidence            3445799999999999  999999999999999998721                  246677788 8999999999998


Q ss_pred             CCCCCceEEEeeCCCeEEEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE----E
Q 019326           96 NLSVPRNLFSTSADGFVSIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH----K  169 (343)
Q Consensus        96 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~  169 (343)
                           ..|++|+.|++|+++|+......+.++  ....+|.+|.|+|.|.+|++|..-.++++||+++-++....    .
T Consensus       185 -----~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q  259 (430)
T KOG0640|consen  185 -----TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ  259 (430)
T ss_pred             -----heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence                 799999999999999996543333322  24468999999999999999999999999999998865433    3


Q ss_pred             cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCce
Q 019326          170 IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  244 (343)
                      +...|.++.+++.++..+++ .||.|++||--+++++.++.   ....|.+..|. +++++++.+.|..+++|.+.++++
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            44678999999999999999 99999999999999999887   34678888888 678999999999999999999999


Q ss_pred             eEEeccccc-----ccEEEEEEEecCCCCCCCCCCeEEEEEcC-CCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          245 AYCIEDAHS-----ARVKGIVVLTKNDGGSTAENPYLVASASS-DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       245 ~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      +.++. +..     ..-+...|+...+         +++.-.+ .+.+.-||.++..+..   +....+++.+.++.-||
T Consensus       340 l~~Yt-GAg~tgrq~~rtqAvFNhtEd---------yVl~pDEas~slcsWdaRtadr~~---l~slgHn~a~R~i~HSP  406 (430)
T KOG0640|consen  340 LKEYT-GAGTTGRQKHRTQAVFNHTED---------YVLFPDEASNSLCSWDARTADRVA---LLSLGHNGAVRWIVHSP  406 (430)
T ss_pred             EEEEe-cCCcccchhhhhhhhhcCccc---------eEEccccccCceeeccccchhhhh---hcccCCCCCceEEEeCC
Confidence            99988 331     1112334555444         6655543 4789999999985443   34556778899999999


Q ss_pred             CCceeccccCCCCCCCc
Q 019326          319 TKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       319 ~~~~~~~~~~~~~~~~~  335 (343)
                      .+.-....+.|-..+-+
T Consensus       407 ~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  407 VEPAFMTCSDDFRARFW  423 (430)
T ss_pred             CCCceeeecccceeeee
Confidence            99887777777666544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=214.82  Aligned_cols=204  Identities=17%  Similarity=0.232  Sum_probs=170.1

Q ss_pred             eeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      .-+|+..+.||.+.|..|.|+ .++|++++.|.+||+|++...+++..|. | ..-|+|++|+|.+.    ++|++|+.|
T Consensus       358 ~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-H-ndfVTcVaFnPvDD----ryFiSGSLD  431 (712)
T KOG0283|consen  358 SEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-H-NDFVTCVAFNPVDD----RYFISGSLD  431 (712)
T ss_pred             cccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-c-CCeeEEEEecccCC----CcEeecccc
Confidence            345678899999999999999 9999999999999999999999999997 5 69999999999984    899999999


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc---------CCcceEEEEe
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI---------GKEASLIKFD  180 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---------~~~~~~~~~~  180 (343)
                      |.|+||++...+.+. +..-..-|++++|.|+|+..++|+.+|.+++|+....+.......         ...|+.+.+.
T Consensus       432 ~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  432 GKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             cceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence            999999998855444 333458899999999999999999999999999987765433322         2368999998


Q ss_pred             CCCC--EEEEEeCCcEEEEEcccceeEEEecCC---cceEEeeec-CCCeEEEEeCCCcEEEEECCC
Q 019326          181 GSGE--KFFMVTEEKVGIHQAEDAKLLCELDGK---KRILCAAPG-ENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       181 ~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      |...  .|++..|..|+|||.++..++..+++.   ..-....|+ ++++++++++|..|++|+...
T Consensus       511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            7554  666669999999999998888888722   222333444 889999999999999999743

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.7e-28  Score=187.03  Aligned_cols=248  Identities=19%  Similarity=0.266  Sum_probs=201.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .|++++.||.+++|++..            ......+ .|..|+.+++|. ...+++|+.||.|+.+|+.++... .+..
T Consensus        27 ~LLvssWDgslrlYdv~~------------~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~igt   92 (323)
T KOG1036|consen   27 DLLVSSWDGSLRLYDVPA------------NSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIGT   92 (323)
T ss_pred             cEEEEeccCcEEEEeccc------------hhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eecc
Confidence            488999999999999987            2222333 489999999999 789999999999999999987654 4556


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | ..+|.|+.+++..     ..+++|+.|++|++||.+.......+.. ...|.++...  ++.|++|+.+..+.+||++
T Consensus        93 h-~~~i~ci~~~~~~-----~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   93 H-DEGIRCIEYSYEV-----GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             C-CCceEEEEeeccC-----CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcc
Confidence            7 8999999999877     6899999999999999987666666653 3478877765  6699999999999999999


Q ss_pred             CCceeE---EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc----eeEEEec-C---------CcceEEeeecC-
Q 019326          161 RGRRSF---YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA----KLLCELD-G---------KKRILCAAPGE-  221 (343)
Q Consensus       161 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~----~~~~~~~-~---------~~~i~~~~~~~-  221 (343)
                      +.....   ...+.-++.++++-|++.-++++ -+|.+.+=.+...    +....++ |         -.+|++++|++ 
T Consensus       164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            877554   44556788999999988877777 8999988666554    2222222 2         25799999996 


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                      -+.|++|+.||.|.+||+.+.+.+..+. .-...|.+++|+.++.         .||.++.
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~---------~LAia~s  294 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGS---------LLAIASS  294 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCC---------eEEEEec
Confidence            4789999999999999999999999988 6678899999999988         8888864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=5.6e-27  Score=194.61  Aligned_cols=279  Identities=13%  Similarity=0.171  Sum_probs=207.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      +++++.|+.|++||+.+            .+....+..|. .+.+++|+  +..+ ++++.++.|++||..+++....+.
T Consensus         4 ~~s~~~d~~v~~~d~~t------------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~   70 (300)
T TIGR03866         4 YVSNEKDNTISVIDTAT------------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP   70 (300)
T ss_pred             EEEecCCCEEEEEECCC------------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence            67889999999999876            22344445444 36778998  5555 567789999999999998887776


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEE-EeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC-eEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLF-STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD-CLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~i~~w  157 (343)
                      .+  ..+..++|+|++     +.++ ++..++.|++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+|
T Consensus        71 ~~--~~~~~~~~~~~g-----~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        71 SG--PDPELFALHPNG-----KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             CC--CCccEEEECCCC-----CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            55  345678999998     5554 456689999999998877777653 34568899999999999888765 56778


Q ss_pred             EccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC------c--ceEEeeecC-CCeE-
Q 019326          158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK------K--RILCAAPGE-NGVL-  225 (343)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~------~--~i~~~~~~~-~~~l-  225 (343)
                      |.++++..........+..++|+|+++.++++  .++.+.+||+++++....+...      .  ....+.+++ ++++ 
T Consensus       143 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~  222 (300)
T TIGR03866       143 DTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF  222 (300)
T ss_pred             eCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence            99888766555556667889999999988655  5899999999998877765421      1  233566774 4554 


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE-cCCCcEEEEeccCccccCCCcccc
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA-SSDGVICVWDVRMAIKEKPLPLAE  304 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~  304 (343)
                      ++.+.++.+.+||.++++....+.  +...+.+++|+|++.         +|+++ +.+|.|++||++++....     .
T Consensus       223 ~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~---------~l~~~~~~~~~i~v~d~~~~~~~~-----~  286 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEK---------YLLTTNGVSNDVSVIDVAALKVIK-----S  286 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCC---------EEEEEcCCCCeEEEEECCCCcEEE-----E
Confidence            444557789999999888776665  456789999999887         78776 568999999999875332     2


Q ss_pred             cccccceeEEEcCC
Q 019326          305 AKTNSRLTCLAGSS  318 (343)
Q Consensus       305 ~~~~~~i~~~~~s~  318 (343)
                      +..+...+.++++|
T Consensus       287 ~~~~~~~~~~~~~~  300 (300)
T TIGR03866       287 IKVGRLPWGVVVRP  300 (300)
T ss_pred             EEcccccceeEeCC
Confidence            33344567777654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=8e-29  Score=197.89  Aligned_cols=238  Identities=18%  Similarity=0.230  Sum_probs=191.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe-----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS-----   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-----   73 (343)
                      -+++++..+.|+|||...-...+...  .++.+...+.||.+.=.+|+|+   ...|++++.|+.|++||+....     
T Consensus       139 iVAt~t~~~dv~Vfd~tk~~s~~~~~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~  216 (422)
T KOG0264|consen  139 IVATKTSSGDVYVFDYTKHPSKPKAS--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV  216 (422)
T ss_pred             EEEecCCCCCEEEEEeccCCCccccc--ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence            36778899999999997633221111  1567778889999988899999   6789999999999999997542     


Q ss_pred             --eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC--CcceeeeeeeccccEEEEEEecC-CCEEEEE
Q 019326           74 --SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHS-GKLALTV  148 (343)
Q Consensus        74 --~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~  148 (343)
                        ....+.+| ...|..++|++...    .+|++++.|+.+.|||++  +.++.....+|.+.|.|++|+|- +..||+|
T Consensus       217 ~~p~~~~~~h-~~~VeDV~~h~~h~----~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~  291 (422)
T KOG0264|consen  217 VDPKTIFSGH-EDVVEDVAWHPLHE----DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG  291 (422)
T ss_pred             ccceEEeecC-Ccceehhhccccch----hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence              34567888 99999999999873    789999999999999999  66777888899999999999994 5788999


Q ss_pred             eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeecC--CCeE
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE--NGVL  225 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~--~~~l  225 (343)
                      +.|++|++||+|+...                                       ++..+. |...|.++.|++  ...|
T Consensus       292 S~D~tV~LwDlRnL~~---------------------------------------~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  292 SADKTVALWDLRNLNK---------------------------------------PLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             cCCCcEEEeechhccc---------------------------------------CceeccCCCcceEEEEeCCCCCcee
Confidence            9999999999987652                                       222333 667778888874  4589


Q ss_pred             EEEeCCCcEEEEECCCC--------------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          226 FTGGEDRSITAWDTNSG--------------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      ++++.|+.+.+||+..-              +++..-- ||...|..+.|+|..+        ..|+|.+.|+.+.||+.
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~kV~DfsWnp~eP--------W~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAKVSDFSWNPNEP--------WTIASVAEDNILQIWQM  403 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEEec-CcccccccccCCCCCC--------eEEEEecCCceEEEeec
Confidence            99999999999998642              2233334 8999999999999876        37899999999999999


Q ss_pred             cCc
Q 019326          292 RMA  294 (343)
Q Consensus       292 ~~~  294 (343)
                      ...
T Consensus       404 s~~  406 (422)
T KOG0264|consen  404 AEN  406 (422)
T ss_pred             ccc
Confidence            743

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=190.85  Aligned_cols=266  Identities=13%  Similarity=0.222  Sum_probs=224.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC------C---
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS------T---   71 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~------~---   71 (343)
                      +.+++.|.+-+||.+++            ..++..+.||.+.|++++|+  +.++++++.|++-.||...      .   
T Consensus       163 ~gtASADhTA~iWs~Es------------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a  230 (481)
T KOG0300|consen  163 CGTASADHTARIWSLES------------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNA  230 (481)
T ss_pred             eeecccccceeEEeecc------------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence            46788999999999998            67888999999999999999  8899999999999999721      0   


Q ss_pred             ---------------------------C----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           72 ---------------------------S----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        72 ---------------------------~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                                                 +    -++..+.+| .+.|.+..|...+     +.+++++.|.+..+||++++
T Consensus       231 ~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg-----~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  231 PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG-----QQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc-----ceeeeeeccccceeeeeccC
Confidence                                       0    134566788 8999999999888     89999999999999999999


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce--eEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR--SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQ  198 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  198 (343)
                      +.+..+.+|....+.++-+|..+++++.+.|.+.++||.+..-.  .....+...+.+..|..+.+.+-...|.++++||
T Consensus       305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWD  384 (481)
T ss_pred             ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEee
Confidence            99999999999999999999999999999999999999985432  2234456789999998877655555999999999


Q ss_pred             cccce-eEEEecCCcceEEeeecCCC-eEEEEeCCCcEEEEECCCCceeEEec----ccccccEEEEEEEecCCCCCCCC
Q 019326          199 AEDAK-LLCELDGKKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIE----DAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       199 ~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                      +++.+ ++.++....+++.++.+.+. .++.--++..|++||+. |..+..++    .+|...|.+.+|..+..-.    
T Consensus       385 LrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~c----  459 (481)
T KOG0300|consen  385 LRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPAC----  459 (481)
T ss_pred             eccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccc----
Confidence            99864 67888889999999998654 77788888999999997 44444333    4899999999999876533    


Q ss_pred             CCeEEEEEcCCCcEEEEeccCc
Q 019326          273 NPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                         -|++++.|..+.-|++..+
T Consensus       460 ---nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  460 ---NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ---ccccccccceeeeeEeccc
Confidence               6899999999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=7.2e-29  Score=208.72  Aligned_cols=277  Identities=20%  Similarity=0.264  Sum_probs=222.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCC----------------CCCc----------ceeeEEeEEecCCCCCeEEEEec--Cce
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYS----------------SDQK----------TLTLTQLFSYPAHLSPITTVAVS--GTA   54 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~----------------~~~~----------~~~~~~~~~~~~h~~~v~~l~~~--~~~   54 (343)
                      +++.+.|++||+|++.......                .++.          .+... ....-+....+.+++.+  +++
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka-~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKA-LVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCccccc-chhhcCcccceEEEEECCCcce
Confidence            6889999999999997622110                0000          00000 11111234568999998  899


Q ss_pred             EEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-CcceeeeeeeccccE
Q 019326           55 AASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTSVKVHKKGV  133 (343)
Q Consensus        55 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v  133 (343)
                      ||+|..-|+++||++...+....+..| ...|.||.|+...  ...++|++++.|..|.|||+. ...+++++.+|...|
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~--~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPV--LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecc-cceeEEEeecCch--hhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            999999999999999999999999999 9999999998543  223789999999999999994 556889999999999


Q ss_pred             EEEEEecCC--CEEEEEeCCCeEEEEEccC---CceeEE---EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEccccee
Q 019326          134 NDLAVHHSG--KLALTVGRDDCLAMVNLVR---GRRSFY---HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL  204 (343)
Q Consensus       134 ~~i~~~~~~--~~l~~~~~d~~i~~wd~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~  204 (343)
                      +++.|.-+|  ..+++++.|+.|.+--.+.   +.....   ......+..++..|..++++++ .|..|+||++++++.
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence            999999887  7899999998876543332   111111   1112457789999999999999 999999999999999


Q ss_pred             EEEec----CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          205 LCELD----GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       205 ~~~~~----~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      .+.|+    +.+....+...+ +.|+++...|.++.++|..+++++.++. +|...|+++.|.++-.         .|++
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCk---------HlIS  700 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCK---------HLIS  700 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeeeecccch---------hhee
Confidence            99998    556677777764 6799999999999999999999999999 9999999999999987         9999


Q ss_pred             EcCCCcEEEEeccC
Q 019326          280 ASSDGVICVWDVRM  293 (343)
Q Consensus       280 ~~~dg~i~vwd~~~  293 (343)
                      .+.||.|.||.+..
T Consensus       701 vsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  701 VSGDGCIFVWKLPL  714 (1080)
T ss_pred             ecCCceEEEEECch
Confidence            99999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.2e-28  Score=214.64  Aligned_cols=285  Identities=18%  Similarity=0.176  Sum_probs=228.6

Q ss_pred             CCCCeEEEEec--CceEEEee--CCCeEEEEEcCC------------CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           41 HLSPITTVAVS--GTAAASGG--TDDTIHLYDLST------------SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      +...|.++..+  +..++||+  .||.++||+.+.            .+.+.....| .+.|+|+.|+|++     ++||
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h-~~sv~CVR~S~dG-----~~lA   85 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDH-DGSVNCVRFSPDG-----SYLA   85 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccc-cCceeEEEECCCC-----CeEe
Confidence            34568888888  88999999  899999998752            2345566778 9999999999999     8999


Q ss_pred             EeeCCCeEEEEECCC------------------cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE
Q 019326          105 STSADGFVSIFDADP------------------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF  166 (343)
Q Consensus       105 s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  166 (343)
                      +|+.|+.|.||....                  ++.+..+.+|...|..++|+|++.+|++++.|++|.+|+.++.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            999999999998762                  34678889999999999999999999999999999999999997665


Q ss_pred             EE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-------CCcceEEeeecC-CCeEEEEe----CCC
Q 019326          167 YH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-------GKKRILCAAPGE-NGVLFTGG----EDR  232 (343)
Q Consensus       167 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-------~~~~i~~~~~~~-~~~l~~~~----~dg  232 (343)
                      .. .+...|..+.|+|-|++|++- .|+.+++|++.+....+.+.       ....+..+.|+| |.+|++..    .-.
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            54 456789999999999999999 99999999988876666655       234578889995 56777653    234


Q ss_pred             cEEEEECCCCceeEEecccccccEEEEEEEecCCCC----CCCCCC----eEEEEEcCCCcEEEEeccCccccCCCcccc
Q 019326          233 SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG----STAENP----YLVASASSDGVICVWDVRMAIKEKPLPLAE  304 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----~~~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  304 (343)
                      ++.|.+..+.+.-..+- +|..++.+++|+|.--..    -.+..+    ..+|+||.|++|.||.....   +|..+..
T Consensus       246 ~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~---RPl~vi~  321 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP---RPLFVIH  321 (942)
T ss_pred             eeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC---Cchhhhh
Confidence            68899988888888888 999999999999852110    001112    16889999999999999654   3333333


Q ss_pred             cccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          305 AKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       305 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      --....|..|+|+|||..+.+.+-|+.+...
T Consensus       322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             hhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            3345679999999999999999999865543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=6.7e-29  Score=201.36  Aligned_cols=292  Identities=13%  Similarity=0.153  Sum_probs=223.4

Q ss_pred             eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           30 LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      .+......+++|...|.++++.  |..|++|+.|-.|++||+...    +..+.+...+...|.++.|++.+     ..|
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-----~~i  229 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-----DQI  229 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-----CeE
Confidence            3445566788999999999998  999999999999999999753    33445554446789999999999     688


Q ss_pred             EEeeCCCeEEEEECCCcceeee------------eeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCce-eEEEE
Q 019326          104 FSTSADGFVSIFDADPFVLLTS------------VKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRR-SFYHK  169 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~~~~------------~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~-~~~~~  169 (343)
                      ++.+.....+|+|.+..+.+..            -++|...+++.+|+|.. ..+++++.||++++||+...+. ...+.
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            8888888999999876554433            34788899999999975 6899999999999999986542 22222


Q ss_pred             c------CCcceEEEEeCCCCEEEEE-eCCcEEEEEccccee--EEEec--CCc--ceEEeeec-CCCeEEEEeCCCcEE
Q 019326          170 I------GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL--LCELD--GKK--RILCAAPG-ENGVLFTGGEDRSIT  235 (343)
Q Consensus       170 ~------~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~~--~~~--~i~~~~~~-~~~~l~~~~~dg~i~  235 (343)
                      .      .-.+..++|+++++.++++ .||.|.+|+..+...  ...+.  |..  .|+|+.|+ ++++|++-+.|++++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence            2      2457889999999999999 999999999865332  22222  544  89999999 789999999999999


Q ss_pred             EEECCCCc-eeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEEcC------CCcEEEEeccCccccCCCccccccc
Q 019326          236 AWDTNSGK-VAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASASS------DGVICVWDVRMAIKEKPLPLAEAKT  307 (343)
Q Consensus       236 i~d~~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~  307 (343)
                      +||+++.+ ++..... ...-+-+.++|+|+..         +|++|..      -|++.+||..+-.....+.+.    
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k---------li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----  456 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK---------LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----  456 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCce---------EEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence            99998764 4443331 1234557788988887         8888864      478999999886544433333    


Q ss_pred             ccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          308 NSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       308 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      ...|..+.|+|--.-+..+.+++..+..-++.
T Consensus       457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            44588889999888888899999877655443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-26  Score=169.83  Aligned_cols=277  Identities=16%  Similarity=0.131  Sum_probs=215.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCC---CcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee---
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSD---QKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS---   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~---   74 (343)
                      .++|+..++.+|-........+..   .+..+......-+-|.+.|.|.+|+  |+++++|+.|.+|++.-.+...+   
T Consensus        47 yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~  126 (350)
T KOG0641|consen   47 YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT  126 (350)
T ss_pred             EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc
Confidence            467888888888665432111100   0111122233445689999999999  99999999999999976543321   


Q ss_pred             --eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           75 --LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        75 --~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                        -.+|.-| .+.|..++|..+.. ..+..|++++. |..|++-|..+++..+.+.+|.+-|.++ ++-++-++++|+.|
T Consensus       127 g~dle~nmh-dgtirdl~fld~~~-s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqd  203 (350)
T KOG0641|consen  127 GHDLEFNMH-DGTIRDLAFLDDPE-SGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQD  203 (350)
T ss_pred             Ccceeeeec-CCceeeeEEecCCC-cCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCC
Confidence              2356667 89999999986542 22356776654 7789999999999999999999998876 34467899999999


Q ss_pred             CeEEEEEccCCceeEEEEcC--------CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC
Q 019326          152 DCLAMVNLVRGRRSFYHKIG--------KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~  221 (343)
                      .+|++||++-..++......        ..+..++..|.|++++++ .|....+||++.++.++.+. |...|.|+.|++
T Consensus       204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp  283 (350)
T KOG0641|consen  204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP  283 (350)
T ss_pred             ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence            99999999988877655431        457889999999999999 99999999999999998886 889999999997


Q ss_pred             C-CeEEEEeCCCcEEEEECCCC----ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          222 N-GVLFTGGEDRSITAWDTNSG----KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       222 ~-~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      + .++++|+.|..|++=|+.-.    -++...- .|...+..+.|+|..-         -+++.+.|.++.+|-++
T Consensus       284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh~~d~---------sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWHPQDF---------SFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEecccceEEEeecccchhhcCceEEEE-eccCceEEEEecCccc---------eeeeccCcceEEEeccC
Confidence            6 59999999999999998732    1233333 7999999999999886         79999999999999764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.5e-28  Score=185.79  Aligned_cols=221  Identities=18%  Similarity=0.193  Sum_probs=186.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      -+|+|+.|-+|+|||+..            ..++..+-.|.+.|+++.|.    .+.|++|+.||.|.+|+....+++..
T Consensus        55 ~~aSGssDetI~IYDm~k------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s  122 (362)
T KOG0294|consen   55 YVASGSSDETIHIYDMRK------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS  122 (362)
T ss_pred             eEeccCCCCcEEEEeccc------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence            378999999999999987            45566667899999999998    23799999999999999999999999


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      +++| .+.|+.++.+|.+     ++.++.+.|+.++.||+-+++.-..++. ...-..+.|+|.|.+++.++.+ .|-+|
T Consensus       123 lK~H-~~~Vt~lsiHPS~-----KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~  194 (362)
T KOG0294|consen  123 LKAH-KGQVTDLSIHPSG-----KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIY  194 (362)
T ss_pred             eccc-ccccceeEecCCC-----ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEE
Confidence            9999 8889999999999     7889999999999999988776555553 2233459999999999888876 58999


Q ss_pred             EccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeec---CCCeEEEEeCCCc
Q 019326          158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPG---ENGVLFTGGEDRS  233 (343)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~---~~~~l~~~~~dg~  233 (343)
                      .+.+.........+..+.++.|...+..++.+.+..|.+||..+..+...+. |..+|..+.+.   .+.+|++++.||.
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence            9988777666666777788888765555555599999999999888877776 89999999865   2469999999999


Q ss_pred             EEEEECCCC
Q 019326          234 ITAWDTNSG  242 (343)
Q Consensus       234 i~i~d~~~~  242 (343)
                      |++||++..
T Consensus       275 I~vWd~~~~  283 (362)
T KOG0294|consen  275 IKVWDIDME  283 (362)
T ss_pred             EEEEEcccc
Confidence            999999865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=4.5e-29  Score=201.90  Aligned_cols=264  Identities=16%  Similarity=0.252  Sum_probs=224.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee--eeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS--LGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~   78 (343)
                      +.+|+. |.|+|||+....      .......+-.+ .....|.++...  |+.|++|+.-.++.|||+.....  ..++
T Consensus       434 VyTgGk-gcVKVWdis~pg------~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael  505 (705)
T KOG0639|consen  434 VYTGGK-GCVKVWDISQPG------NKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL  505 (705)
T ss_pred             eEecCC-CeEEEeeccCCC------CCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc
Confidence            345554 889999997632      22222222222 245678887776  89999999999999999986543  3334


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ... .-...+|+.+|+.     +..+++..||.|.|||+.+...++.|++|.+.+.||..+++|..|.+|+-|++|+.||
T Consensus       506 tss-apaCyALa~spDa-----kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  506 TSS-APACYALAISPDA-----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD  579 (705)
T ss_pred             CCc-chhhhhhhcCCcc-----ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence            443 4567889999999     8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEE
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITA  236 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i  236 (343)
                      +++++.+....+..+|.++...|++.+++++ .++.+.+......+..+...|..-|.++.|. -++++++.+.|+.+..
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            9999999999999999999999999999999 8999999888777666666699999999998 5889999999999999


Q ss_pred             EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       237 ~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      |...-|..+...+  ....|.+..++.++.         +++|||.|....||.+
T Consensus       660 wrtPyGasiFqsk--E~SsVlsCDIS~ddk---------yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIFQSK--ESSSVLSCDISFDDK---------YIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCccccceeecc--ccCcceeeeeccCce---------EEEecCCCcceEEEEE
Confidence            9999999888877  778999999999887         9999999999888875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-29  Score=208.87  Aligned_cols=238  Identities=19%  Similarity=0.274  Sum_probs=205.4

Q ss_pred             CCCCeE---EEEec---CceEEEeeCCCeEEEEEcCCCe------eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           41 HLSPIT---TVAVS---GTAAASGGTDDTIHLYDLSTSS------SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        41 h~~~v~---~l~~~---~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      |...|.   .+..+   +++|+|||.||.|++|+.....      .+..++.| ...|+.+....++     +.|++++.
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~H-sDWVNDiiL~~~~-----~tlIS~Ss   93 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHH-SDWVNDIILCGNG-----KTLISASS   93 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhh-HhHHhhHHhhcCC-----CceEEecC
Confidence            444455   34444   6789999999999999986532      36677888 9999999999888     79999999


Q ss_pred             CCeEEEEECCCc--ceeeeeeeccccEEEEEE-ecCCCEEEEEeCCCeEEEEEccCCce--eE------EE----EcCCc
Q 019326          109 DGFVSIFDADPF--VLLTSVKVHKKGVNDLAV-HHSGKLALTVGRDDCLAMVNLVRGRR--SF------YH----KIGKE  173 (343)
Q Consensus       109 dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~d~~i~~wd~~~~~~--~~------~~----~~~~~  173 (343)
                      |-+|++|+....  -++.++..|...|.++++ .++...+++||.|+.|.+||+.++..  +.      ..    .....
T Consensus        94 DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   94 DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence            999999999765  588889999999999999 77888999999999999999997732  11      11    22356


Q ss_pred             ceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecc
Q 019326          174 ASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED  250 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  250 (343)
                      +.+++.++.+..++.+ .++.+++||.++.+.+..+. |...|.++..+ ++..+++++.||+|++||+...+++.++. 
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-  252 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-  252 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-
Confidence            8889999999888888 89999999999999888887 88999999988 57899999999999999999999999999 


Q ss_pred             cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          251 AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       251 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .|...|+++..++.-.         .+++|+.||.|..=|+++.
T Consensus       253 vH~e~VWaL~~~~sf~---------~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSFT---------HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccCceEEEeeCCCcc---------eEEecCCCCcEEecccCCc
Confidence            9999999999998777         9999999999999999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.3e-28  Score=183.36  Aligned_cols=245  Identities=19%  Similarity=0.267  Sum_probs=199.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      |++|+.||+||+|+++...       .  ..+ .....|.++|.+++|+  |..+++|+.|+.+++||+.++ .+..+..
T Consensus        43 ~~A~SWD~tVR~wevq~~g-------~--~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~  111 (347)
T KOG0647|consen   43 LAAGSWDGTVRIWEVQNSG-------Q--LVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAA  111 (347)
T ss_pred             EEecccCCceEEEEEecCC-------c--ccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceeeeee
Confidence            6799999999999998721       1  122 3344699999999999  999999999999999999999 5567778


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | .++|.++.|.+....   ..|++|+.|.+|+.||.+...++.++.. .+.+.++..-.  .+++++..++.|.+|+++
T Consensus       112 H-d~pvkt~~wv~~~~~---~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~--pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  112 H-DAPVKTCHWVPGMNY---QCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLY--PMAVVATAERHIAVYNLE  184 (347)
T ss_pred             c-ccceeEEEEecCCCc---ceeEecccccceeecccCCCCeeeeeec-cceeeehhccC--ceeEEEecCCcEEEEEcC
Confidence            8 999999999987721   4899999999999999999888888874 55677766543  488899999999999998


Q ss_pred             CCcee---EEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeE--EEec-CC---------cceEEeeecC-CC
Q 019326          161 RGRRS---FYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL--CELD-GK---------KRILCAAPGE-NG  223 (343)
Q Consensus       161 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~--~~~~-~~---------~~i~~~~~~~-~~  223 (343)
                      .+...   ....+.-.+.+++..++....+.+ -+|.+.+..+..+...  ..++ |.         ..|++++|++ -+
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence            76532   233456778899999888888888 8999999988775332  2222 22         3578899986 46


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      .|++++.||+..+||-.....+.+.+ .|..+|++..|+.++.
T Consensus       265 tlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGS  306 (347)
T ss_pred             eEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCC
Confidence            89999999999999999888888888 8999999999999887

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6e-28  Score=193.18  Aligned_cols=273  Identities=18%  Similarity=0.260  Sum_probs=219.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCC--CCC---cceeeEEeEEe-cCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYS--SDQ---KTLTLTQLFSY-PAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~--~~~---~~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~   73 (343)
                      +.++++.+++|.=|++.+....+  .+.   ......+...- ++|...|.+++.+  +.+|++|+.|..|.||+.++.+
T Consensus       156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e  235 (479)
T KOG0299|consen  156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE  235 (479)
T ss_pred             ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence            46788999999999998744221  000   00011111111 3899999999998  9999999999999999999999


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCe
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                      .+..+.+| .+.|.+++|....     ..+++++.|++|++|+++....+.++.+|.+.|.+|....-++.+-+|+.|++
T Consensus       236 hv~~~~gh-r~~V~~L~fr~gt-----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT  309 (479)
T KOG0299|consen  236 HVKVFKGH-RGAVSSLAFRKGT-----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRT  309 (479)
T ss_pred             hhhccccc-ccceeeeeeecCc-----cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccce
Confidence            99999999 9999999999777     78999999999999999999999999999999999999888888888889999


Q ss_pred             EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec--C-----------CcceEEeee
Q 019326          154 LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD--G-----------KKRILCAAP  219 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--~-----------~~~i~~~~~  219 (343)
                      +++|++....++........+.|++|-.+ ..|+++ .+|.|.+|++...+++....  |           +..|++++.
T Consensus       310 ~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~  388 (479)
T KOG0299|consen  310 VRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV  388 (479)
T ss_pred             eEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence            99999977777777777788999999765 455566 99999999999988887665  2           125778887


Q ss_pred             cC-CCeEEEEeCCCcEEEEECCCC----ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE-cCCCcEEEEecc
Q 019326          220 GE-NGVLFTGGEDRSITAWDTNSG----KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA-SSDGVICVWDVR  292 (343)
Q Consensus       220 ~~-~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~  292 (343)
                      .+ .+++++|+.+|.|++|-+..+    +++..+.  -.+.|++|+|++++.         .+++| +....+-=|-..
T Consensus       389 i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk---------~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  389 IPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGK---------RIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             cccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEccCCC---------EEEEecccccccceeeEe
Confidence            75 579999999999999998877    4566665  778999999999887         45544 555555455444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=193.67  Aligned_cols=275  Identities=17%  Similarity=0.179  Sum_probs=229.4

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe-eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS-SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +.-...+|++|||+  .+.||.+-.+|.|.+|++..+= +...+.++++..|.+|+|++.+      .|++.+.+|.|.-
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~------RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG------RLFSSGLSGSITE   94 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC------eEEeecCCceEEE
Confidence            33457889999999  7889999999999999998763 4456677778999999999766      8999999999999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEE-e
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~  190 (343)
                      ||+.+.++...+....+.|++++.+|.+..++.|+.||.+..++...++......+.   ..+.+++|+|++..++++ .
T Consensus        95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            999999999999988999999999999999999999998888888887766655443   668899999999999999 8


Q ss_pred             CCcEEEEEcccceeEEEec---------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEE
Q 019326          191 EEKVGIHQAEDAKLLCELD---------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVV  261 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~---------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  261 (343)
                      ||.|++||...+..+....         ...-|.++.+-..+.+++|...|+|.+||...+..++.+. .|...|.+|+.
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav  253 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV  253 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence            9999999999988776322         1223566666678899999999999999999999999999 99999999999


Q ss_pred             EecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          262 LTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      .++++         ++++++.|+.|.-+...+...+-........+...|.+++..++  .++.+..|.
T Consensus       254 ~~~~d---------~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~  311 (691)
T KOG2048|consen  254 ADNED---------RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDF  311 (691)
T ss_pred             cCCCC---------eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceee
Confidence            99887         99999999999999988765432222223344456889998877  666666665

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=189.98  Aligned_cols=282  Identities=13%  Similarity=0.180  Sum_probs=234.2

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCC--CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLST--SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      .+.|+++.|+  ...|++++.|+.+++|.++.  ...++.+.-. ..+|.+.+|.|+|.    ..+++++.-..++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f~p~G~----~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEFAPNGH----SVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeeecCCCc----eEEEecccceEEEEeec
Confidence            4789999999  67899999999999998863  3456666666 78999999999993    48999999999999999


Q ss_pred             CCccee--eeeeecc-ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCc
Q 019326          118 DPFVLL--TSVKVHK-KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       118 ~~~~~~--~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                      .+.+..  ....++. ..+.....+|++++|+..+..|.|.+....+++.+..+...+.+..++|+.+++.++++ .+|.
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCce
Confidence            876533  2233333 36777888999999999999999999999999999999999999999999999988888 9999


Q ss_pred             EEEEEcccceeEEEecCCcce--EEeeec-CCCeEEEEeCCCcEEEEECCC------CceeEEecccccccEEEEEEEec
Q 019326          194 VGIHQAEDAKLLCELDGKKRI--LCAAPG-ENGVLFTGGEDRSITAWDTNS------GKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~~~i--~~~~~~-~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      |.+||++...+++.+...+.+  ++++.+ ++.+|++|+..|.|.|||..+      .+++..+. .-...|++|.|+++
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQFNHD  446 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeeeeeCcc
Confidence            999999999999998855554  455555 678999999999999999653      46777777 67789999999999


Q ss_pred             CCCCCCCCCCeEEEEEc--CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          265 NDGGSTAENPYLVASAS--SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      .+         +||.+|  .+..+|+-.+.+.....-.|... ..-+.|+||+|||.+.|++.|..++++..++.+.
T Consensus       447 ~q---------iLAiaS~~~knalrLVHvPS~TVFsNfP~~n-~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  447 AQ---------ILAIASRVKKNALRLVHVPSCTVFSNFPTSN-TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             hh---------hhhhhhhccccceEEEeccceeeeccCCCCC-CcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence            87         777665  46789999998876555555442 2334699999999999999999999998877653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-27  Score=176.24  Aligned_cols=232  Identities=19%  Similarity=0.216  Sum_probs=180.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCCCee--e
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLSTSSS--L   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~--~   75 (343)
                      ||+++++|++|+||.++...         ..+++.++.||.+||..++|.    |++||+++.||.|.||.-.+++-  .
T Consensus        25 rlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~   95 (299)
T KOG1332|consen   25 RLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA   95 (299)
T ss_pred             eeeeecCCccEEEEEEcCCC---------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh
Confidence            79999999999999998731         247788999999999999997    89999999999999999988743  3


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc---ceeeeeeeccccEEEEEEecC---C-------
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF---VLLTSVKVHKKGVNDLAVHHS---G-------  142 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~-------  142 (343)
                      .....| ...|++++|.|.+.   +-.|+.++.||.|.|.+.+..   ........|.-.|++++|.|.   |       
T Consensus        96 ~e~~~h-~~SVNsV~waphey---gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   96 YEHAAH-SASVNSVAWAPHEY---GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             hhhhhh-cccceeeccccccc---ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence            455678 99999999999873   468999999999999988653   233445679999999999985   3       


Q ss_pred             ----CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEe
Q 019326          143 ----KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCA  217 (343)
Q Consensus       143 ----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~  217 (343)
                          +.|++|+.|+.|++|+...++-....                                      .+. |..-|+.+
T Consensus       172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--------------------------------------~l~~H~dwVRDV  213 (299)
T KOG1332|consen  172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLER--------------------------------------TLEGHKDWVRDV  213 (299)
T ss_pred             ccccceeeccCCccceeeeecCCcchhhhh--------------------------------------hhhhcchhhhhh
Confidence                56999999999999998775321111                                      111 44444455


Q ss_pred             eec-----CCCeEEEEeCCCcEEEEECCCCc--eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          218 APG-----ENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       218 ~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +|.     +...+++++.||++.||..+...  -..++.......+..+.|+..+.         +|+.++.|+.|.+|.
T Consensus       214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn---------~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN---------ILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc---------EEEEecCCcEEEEEE
Confidence            544     34589999999999999876321  11222214557899999999988         999999999999997


Q ss_pred             ccC
Q 019326          291 VRM  293 (343)
Q Consensus       291 ~~~  293 (343)
                      -+.
T Consensus       285 e~~  287 (299)
T KOG1332|consen  285 ENV  287 (299)
T ss_pred             eCC
Confidence            664

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=192.01  Aligned_cols=238  Identities=18%  Similarity=0.253  Sum_probs=200.9

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      -.++|.|++-+  |.+|+.|+..|.|++|.+.+|+.+..+..| -..|+|+.|+.++     .+|++|+.||.|.+|.+.
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-YQ~ITcL~fs~dg-----s~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-YQSITCLKFSDDG-----SHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-ccceeEEEEeCCC-----cEEEecCCCccEEEEEEE
Confidence            46789999987  888888889999999999999999999999 8999999999999     899999999999999862


Q ss_pred             ---------CcceeeeeeeccccEEEEEEecCC--CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          119 ---------PFVLLTSVKVHKKGVNDLAVHHSG--KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       119 ---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                               +-++...+..|.-+|+++...+.+  .++++++.|.++++||+..+..+.....+..+.+++++|.+..++
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVY  233 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEE
Confidence                     346788899999999999988764  689999999999999999999999999999999999999999999


Q ss_pred             EE-eCCcEEEEEcccce----------------eEEEec-CCc--ceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          188 MV-TEEKVGIHQAEDAK----------------LLCELD-GKK--RILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~----------------~~~~~~-~~~--~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      ++ .+|.|.+.++....                .+..+. |..  +|+|++.+ ++.+|++|+.||.+.|||+.+.++++
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR  313 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence            99 99999988775432                112222 444  89999998 88999999999999999999999999


Q ss_pred             EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++. ...++|+.+.+.|-...        .+..-.....+..|++..
T Consensus       314 tl~-~~kgpVtnL~i~~~~~~--------~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  314 TLQ-TSKGPVTNLQINPLERG--------IILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             HHh-hhccccceeEeeccccc--------eecccccCccCCchHhhc
Confidence            887 57789999999766441        233333344555666554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=4.7e-28  Score=196.05  Aligned_cols=281  Identities=17%  Similarity=0.206  Sum_probs=232.6

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC---eeeeEeccC-CCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS---SSLGAIHHH-ESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      ++.++ .|..-|.+++++  ...++||+. |.|+|||+...   ..+..+... ....|.++...|++     +.|++|+
T Consensus       412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-----rtLivGG  484 (705)
T KOG0639|consen  412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----RTLIVGG  484 (705)
T ss_pred             hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----ceEEecc
Confidence            34444 588888888888  678999886 67999999753   233333322 15789999999999     8999999


Q ss_pred             CCCeEEEEECCCcce--eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCC
Q 019326          108 ADGFVSIFDADPFVL--LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGE  184 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~  184 (343)
                      +-.++.|||+....+  ..++.........++.+||.+..+++..||.|.|||+.+...+..+. +...+.|+.++++|.
T Consensus       485 eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence            999999999965433  33343334467889999999999999999999999999888776554 557899999999999


Q ss_pred             EEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          185 KFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      .+.++ -|+.++.||++.++.+.+......|.++..++ +.+++.|-.++.+.+......+. ..+. -|..-|.++.|.
T Consensus       565 klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlh-lheScVLSlKFa  642 (705)
T KOG0639|consen  565 KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLH-LHESCVLSLKFA  642 (705)
T ss_pred             eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-eeec-ccccEEEEEEec
Confidence            99999 89999999999999999988889999999884 67999999999999998775543 4454 699999999999


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +.+.         ++++.+.|..+..|....+.     .+.+....+.|.|.++|.|.+|++.|+++++.-+++.
T Consensus       643 ~cGk---------wfvStGkDnlLnawrtPyGa-----siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  643 YCGK---------WFVSTGKDNLLNAWRTPYGA-----SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCc---------eeeecCchhhhhhccCcccc-----ceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9988         99999999999999998875     4555666778999999999999999999988766554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=2.4e-27  Score=198.63  Aligned_cols=276  Identities=16%  Similarity=0.195  Sum_probs=220.4

Q ss_pred             eEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeee--EeccCCCCCeEE-EEEeCCCCCCCCceEEEee
Q 019326           32 LTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLG--AIHHHESSSVTS-LAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~-l~~~~~~~~~~~~~l~s~~  107 (343)
                      ++..+.+.||...|..+++. +..+++++.||++++|+-...+.+.  .+.+| .+-|.. +++.+..    .-.+++|+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~-~g~i~~~i~y~e~~----~~~l~~g~   78 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGP-KGFIANSICYAESD----KGRLVVGG   78 (745)
T ss_pred             ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccC-cceeeccceecccc----CcceEeec
Confidence            45567788999999999988 7789999999999999987655443  45666 566666 7777533    14699999


Q ss_pred             CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          108 ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      .|.+|.+|...+..+...+++|+..|.+++...++. +++|+.|.++++|....-... ...+...|..+..-|++ .++
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~v  155 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYV  155 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecCCC-cEE
Confidence            999999999999999999999999999999888876 999999999999987543322 45566788899999988 555


Q ss_pred             EE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ++ .|..|++|.-  ++.++++. |...|..+++-++..+++++.||.|++|++ +|+.+.++. +|...|.++....++
T Consensus       156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~  231 (745)
T KOG0301|consen  156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSD  231 (745)
T ss_pred             eccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCC
Confidence            55 9999999976  77778877 888999999999989999999999999999 689999999 999999999966666


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      .         .++|+++|++++||+....  .+.+.+    ....|.+..+-+++... .+..|+.++.+
T Consensus       232 ~---------~Ivs~gEDrtlriW~~~e~--~q~I~l----PttsiWsa~~L~NgDIv-vg~SDG~VrVf  285 (745)
T KOG0301|consen  232 G---------LIVSTGEDRTLRIWKKDEC--VQVITL----PTTSIWSAKVLLNGDIV-VGGSDGRVRVF  285 (745)
T ss_pred             C---------eEEEecCCceEEEeecCce--EEEEec----CccceEEEEEeeCCCEE-EeccCceEEEE
Confidence            5         9999999999999999832  222211    12247777666655543 45556655443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1.6e-25  Score=181.45  Aligned_cols=297  Identities=17%  Similarity=0.167  Sum_probs=239.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      |++.+..+.+..|+.+.       +...+.+-++.-+ .+..|.|++|. +.-++||..+|.|.||+..+.+..+....|
T Consensus       215 liit~Gk~H~~Fw~~~~-------~~l~k~~~~fek~-ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH  286 (626)
T KOG2106|consen  215 LIITCGKGHLYFWTLRG-------GSLVKRQGIFEKR-EKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAH  286 (626)
T ss_pred             EEEEeCCceEEEEEccC-------CceEEEeeccccc-cceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeec
Confidence            56666779999998876       3333333333322 23779999999 788999999999999999988888877788


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee--eeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV--KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                       .+.|.+|+...++      .|++|+.|..|..|| ...+.++..  ....++|..++=...+  |+.|...+.|..=.+
T Consensus       287 -~ggv~~L~~lr~G------tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  287 -DGGVFSLCMLRDG------TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTL  356 (626)
T ss_pred             -CCceEEEEEecCc------cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeee
Confidence             9999999999998      788899999999999 433444433  3345678877654433  888888888888888


Q ss_pred             cCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                      +.+-.+..+.+......++.+|+.++++++ .|+.+++|+  ..++........+..|+.|++.+.++.|+..|...+.|
T Consensus       357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLD  434 (626)
T ss_pred             cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEe
Confidence            888888888888899999999999999999 999999999  67777777788899999999877999999999999999


Q ss_pred             CCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          239 TNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      .++...+..-. . ..+++.++|+|++.         +||.|+.|+.|+||.+......  ..........+|+.++||+
T Consensus       435 ~e~~~lv~~~~-d-~~~ls~v~ysp~G~---------~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  435 TETQDLVTIHT-D-NEQLSVVRYSPDGA---------FLAVGSHDNHIYIYRVSANGRK--YSRVGKCSGSPITHLDWSS  501 (626)
T ss_pred             cccceeEEEEe-c-CCceEEEEEcCCCC---------EEEEecCCCeEEEEEECCCCcE--EEEeeeecCceeEEeeecC
Confidence            99865555544 4 89999999999998         9999999999999999875321  1222233348899999999


Q ss_pred             CCceeccccCCCCC
Q 019326          319 TKSFKRPQIGDSAP  332 (343)
Q Consensus       319 ~~~~~~~~~~~~~~  332 (343)
                      |++|+...+.|-.+
T Consensus       502 Ds~~~~~~S~d~ei  515 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEI  515 (626)
T ss_pred             CCceEEeccCceEE
Confidence            99999988877543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.9e-28  Score=206.48  Aligned_cols=231  Identities=19%  Similarity=0.194  Sum_probs=189.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      |++++..|.|.+||+...         ...+.+..|..|...|+++.|+   .++|++|+.||.|++||++..+....+.
T Consensus       103 IAT~s~nG~i~vWdlnk~---------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~  173 (839)
T KOG0269|consen  103 IATCSTNGVISVWDLNKS---------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR  173 (839)
T ss_pred             heeecCCCcEEEEecCcc---------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence            789999999999999762         2245566788999999999999   8999999999999999999999888998


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      +. ...|..+.|+|..    +..|+++...|.+++||++. .++...+..|.++|.++.|+|++.+|++||.|++|+|||
T Consensus       174 ~n-SESiRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  174 SN-SESIRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cc-chhhhceeeccCC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            88 8999999999987    48999999999999999965 457788899999999999999999999999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCC--CeEEEEeC--CCcE
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN--GVLFTGGE--DRSI  234 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~--dg~i  234 (343)
                      ..+++.-                                      ...++....++.++.|-|.  ..|++++.  |-.|
T Consensus       249 ~t~~~~~--------------------------------------~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV  290 (839)
T KOG0269|consen  249 MTDSRAK--------------------------------------PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSV  290 (839)
T ss_pred             ccCCCcc--------------------------------------ceeEEeecceeeeeeeccCccchhhhhhccccceE
Confidence            9765532                                      2222233344555555432  36666653  7789


Q ss_pred             EEEECCCCce-eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          235 TAWDTNSGKV-AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       235 ~i~d~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +|||++..-. ..++. .|...++.++|.....        ..+.+++.||+|..-.+++.
T Consensus       291 ~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~~d~--------~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  291 HVWDVRRPYIPYATFL-EHTDSVTGIAWDSGDR--------INLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             EEEeeccccccceeee-ccCccccceeccCCCc--------eeeEeecCccHHHHhhhhcc
Confidence            9999987654 45555 8999999999987433        28999999999988777765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=186.07  Aligned_cols=275  Identities=15%  Similarity=0.202  Sum_probs=208.4

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCC-CCCeEEEE-ecCceEEEeeC-CCeEEEEEcCCCeeeeEeccCCCCCe
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAH-LSPITTVA-VSGTAAASGGT-DDTIHLYDLSTSSSLGAIHHHESSSV   86 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~-~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v   86 (343)
                      ..+.+||++++            ....++++. ...-.++. ..+.+++++.. -..|.+|.+..........-- .++|
T Consensus        18 ~~~~~~dl~TG------------t~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~-Pg~v   84 (476)
T KOG0646|consen   18 INCIVWDLRTG------------TSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL-PGPV   84 (476)
T ss_pred             cceeEEecCCC------------ceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhccc-ccce
Confidence            45899999982            334444443 11112222 22566666654 457899998866555422223 5889


Q ss_pred             EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC----
Q 019326           87 TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG----  162 (343)
Q Consensus        87 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~----  162 (343)
                      .+++-+|.+     .+|+.|+..|.|++|.+.+|.++..+..|-..|+++.|+.|+.+|++|+.||.|.+|.+..-    
T Consensus        85 ~al~s~n~G-----~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   85 HALASSNLG-----YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             eeeecCCCc-----eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            999999999     67888889999999999999999999999999999999999999999999999999987432    


Q ss_pred             ---c--eeEEE-EcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCC
Q 019326          163 ---R--RSFYH-KIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDR  232 (343)
Q Consensus       163 ---~--~~~~~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg  232 (343)
                         .  +...+ .+.-+|..+...+.  ..+++++ .|..+++||+..+.++.++..+..+.+++.++ +..+++|+.+|
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence               1  11111 22345666665554  4577777 99999999999999999999999999999986 57999999999


Q ss_pred             cEEEEECCCC----------------ceeEEecccccc--cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          233 SITAWDTNSG----------------KVAYCIEDAHSA--RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       233 ~i~i~d~~~~----------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .|.+.++.+.                ..+..+. +|..  .|++++++-++.         +|++|+.||.++|||+.+.
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~Dgt---------lLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGT---------LLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCcc---------EEEeeCCCCCEEEEecchH
Confidence            9999887532                2344555 8887  999999999988         9999999999999999986


Q ss_pred             cccCCCcccccccccceeEEEc
Q 019326          295 IKEKPLPLAEAKTNSRLTCLAG  316 (343)
Q Consensus       295 ~~~~~~~~~~~~~~~~i~~~~~  316 (343)
                      +..+...    ...++|+.+.+
T Consensus       310 Q~iRtl~----~~kgpVtnL~i  327 (476)
T KOG0646|consen  310 QCIRTLQ----TSKGPVTNLQI  327 (476)
T ss_pred             HHHHHHh----hhccccceeEe
Confidence            5333221    14456666666

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=4.5e-27  Score=195.35  Aligned_cols=275  Identities=19%  Similarity=0.230  Sum_probs=205.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE--
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA--   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~--   77 (343)
                      .|+.+..||.|.++|.....      ...+...+.....|...|..+.|.  ...|++++.|.++++||+++.++...  
T Consensus        66 iLavadE~G~i~l~dt~~~~------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~  139 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIV------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRL  139 (720)
T ss_pred             eEEEecCCCceeeecchhhh------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeeccee
Confidence            37889999999999987521      011223345566899999999999  56799999999999999999988877  


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc---------------------------eeeeeeecc
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV---------------------------LLTSVKVHK  130 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~  130 (343)
                      +.+| ...|.+++|.+.+    +..|++|+.||.|.|||++-..                           .+...+.+.
T Consensus       140 ~~GH-~~SvkS~cf~~~n----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  140 NLGH-TGSVKSECFMPTN----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             eccc-ccccchhhhccCC----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            8899 9999999999998    5899999999999999984211                           111222344


Q ss_pred             ccEEE---EEEecCCCEEEEEeC-CCeEEEEEccCCceeEEEEc------------CCcceEEEEeCCCCEEEEE-eCCc
Q 019326          131 KGVND---LAVHHSGKLALTVGR-DDCLAMVNLVRGRRSFYHKI------------GKEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       131 ~~v~~---i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                      ..|.+   +.+..|...|++++. |+.|++||+++........-            ...+.++..+..|.++++. .|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            44444   455567778998888 99999999998764432221            1235567777778887777 9999


Q ss_pred             EEEEEccccee--EEEecCC----cceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCC
Q 019326          194 VGIHQAEDAKL--LCELDGK----KRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       194 i~~~d~~~~~~--~~~~~~~----~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      |+.|++..-..  +..+.+.    ..+.++..-++.++++|+.|...++|.+.+.+.--.+..+|...|++++|.|....
T Consensus       295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT  374 (720)
T ss_pred             EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence            99999986443  2333221    12222222267899999999999999998876544444499999999999998654


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                              -+++++.|-++++|++..+.
T Consensus       375 --------~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  375 --------PVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             --------CceeeccCcceEEEeccCch
Confidence                    47888999999999997763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=176.70  Aligned_cols=262  Identities=18%  Similarity=0.211  Sum_probs=195.8

Q ss_pred             cCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           39 PAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      ..|.+.|..+..+  |.+|||++.|++|+|+...++   +++.++.+| .++|..++|....   .+.+|++++.||.|.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh-~GPVwqv~wahPk---~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH-SGPVWKVAWAHPK---FGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC-CCCeeEEeecccc---cCcEeeEeecCceEE
Confidence            3688888887766  999999999999999999865   567889999 9999999998622   138999999999999


Q ss_pred             EEECCCcc--eeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCC-c---eeEEEEcCCcceEEEEeCCCCE
Q 019326          114 IFDADPFV--LLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRG-R---RSFYHKIGKEASLIKFDGSGEK  185 (343)
Q Consensus       114 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~  185 (343)
                      ||.-.+++  ....+..|...|++++|.|.  |-.|++++.||.|.+.+.+.. .   ......+...+++++|.|... 
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~-  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA-  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC-
Confidence            99987764  45566789999999999986  478999999999999998765 1   112233445567777776411 


Q ss_pred             EEEEeCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCc--eeEEecccccccEEEEEEE
Q 019326          186 FFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       186 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~  262 (343)
                                               +++...-... +-..|++|+.|..|+||+..+++  ...++. +|.+.|+.++|.
T Consensus       163 -------------------------~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwa  216 (299)
T KOG1332|consen  163 -------------------------PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWA  216 (299)
T ss_pred             -------------------------CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhc
Confidence                                     0000000000 12579999999999999998763  334467 999999999999


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      |....     ...+|+++|.||++.||..+.........+. ......+..+.||..|.+++.+.++++...+.+
T Consensus       217 P~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  217 PSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cccCC-----CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            97531     1228999999999999988743222211221 124567999999999999999999997765544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-24  Score=158.48  Aligned_cols=285  Identities=15%  Similarity=0.142  Sum_probs=212.5

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC------CC--------eeeeEeccCCCCCeEEEEEeCC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS------TS--------SSLGAIHHHESSSVTSLAFYTP   94 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~------~~--------~~~~~~~~~~~~~v~~l~~~~~   94 (343)
                      .+..+..+. ....|.+++|+  |.+.++|+...+++|-...      .+        ..+..-..||.+.|.|.+|+|.
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            344454443 57789999999  8899999999998886432      11        1112223455999999999999


Q ss_pred             CCCCCCceEEEeeCCCeEEEEECCCcc-----eeeeeeeccccEEEEEEecC----CCEEEEEeC-CCeEEEEEccCCce
Q 019326           95 QNLSVPRNLFSTSADGFVSIFDADPFV-----LLTSVKVHKKGVNDLAVHHS----GKLALTVGR-DDCLAMVNLVRGRR  164 (343)
Q Consensus        95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~-d~~i~~wd~~~~~~  164 (343)
                      +     +++++|+.|.+|++.......     .-.++.-|.+.|..++|..+    +..|++++. |-.|++-|..+++.
T Consensus       101 g-----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen  101 G-----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             c-----CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence            9     899999999999998764322     22456779999999999754    456776654 66677778777775


Q ss_pred             eEEEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---C-----CcceEEeeecC-CCeEEEEeCCCc
Q 019326          165 SFYHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---G-----KKRILCAAPGE-NGVLFTGGEDRS  233 (343)
Q Consensus       165 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~-----~~~i~~~~~~~-~~~l~~~~~dg~  233 (343)
                      ...... .+.+.. -++-++-.++.+ .|.+|+.||++-..++..+.   |     ...|.+++..+ +++|++|-.|..
T Consensus       176 ~~a~sghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  176 FHALSGHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             ceeecCCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            544332 233322 234467778888 89999999999998888876   2     25688888874 678999999999


Q ss_pred             EEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeE
Q 019326          234 ITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTC  313 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~  313 (343)
                      ..+||++-+++++.+. .|...|.++.|+|...         ++++++.|..|++=|+......+...+....+..++..
T Consensus       255 c~lydirg~r~iq~f~-phsadir~vrfsp~a~---------yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~  324 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAH---------YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ  324 (350)
T ss_pred             eEEEEeeCCceeeeeC-CCccceeEEEeCCCce---------EEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence            9999999999999999 9999999999999887         99999999999999998653222222233456666777


Q ss_pred             EEcCCCCceeccccCCCCC
Q 019326          314 LAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       314 ~~~s~~~~~~~~~~~~~~~  332 (343)
                      +.|.|..--.++.+.|...
T Consensus       325 ~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  325 CRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             EEecCccceeeeccCcceE
Confidence            8888876666666666544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=4e-25  Score=189.07  Aligned_cols=317  Identities=17%  Similarity=0.176  Sum_probs=233.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|+++..++.+.+|+......      +. ......++...+.|+++.-.   =+.++.|+.+|.+++|++++++.+.++
T Consensus       126 ~lia~d~~~~l~vw~~s~~~~------e~-~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f  198 (910)
T KOG1539|consen  126 HLIAVDISNILFVWKTSSIQE------EL-YLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF  198 (910)
T ss_pred             eEEEEEccCcEEEEEeccccc------cc-cccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEe
Confidence            367888899999999876210      10 12122223333338887665   577899999999999999999999999


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCCeEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDDCLAMV  157 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~~w  157 (343)
                      +.+ ...|+++.-+|--     ..++.|..+|+|.+++++.++.+.+++...++|++++|..||+ .+++++..|.+.+|
T Consensus       199 ~~~-~s~IT~ieqsPaL-----DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  199 QEF-FSRITAIEQSPAL-----DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW  272 (910)
T ss_pred             ccc-ccceeEeccCCcc-----eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence            999 8999999999988     7999999999999999999999999995569999999999985 56666777999999


Q ss_pred             EccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-eCCcEEEE-------------------------------------
Q 019326          158 NLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TEEKVGIH-------------------------------------  197 (343)
Q Consensus       158 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~-------------------------------------  197 (343)
                      |++..+......  +.+.+....|.|....++++ .|+.+++|                                     
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            998766543322  22334444444444444443 33333322                                     


Q ss_pred             ---------------------------------------------------------------------------Ecccc
Q 019326          198 ---------------------------------------------------------------------------QAEDA  202 (343)
Q Consensus       198 ---------------------------------------------------------------------------d~~~~  202 (343)
                                                                                                 +.++.
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence                                                                                       22221


Q ss_pred             ee-EEEecCC------cceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEe--cccccccEEEEEEEecCCCCCCCC
Q 019326          203 KL-LCELDGK------KRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCI--EDAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       203 ~~-~~~~~~~------~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                      .. ...+.+.      ..+++++.+ -|++.+.|...|.|.+|++++|-...++  ..+|..+|++++....++      
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~------  506 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR------  506 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc------
Confidence            11 1112222      346677776 5888999999999999999999888887  238999999999988887      


Q ss_pred             CCeEEEEEcCCCcEEEEeccCcccc------CCC------------------------------ccccc-ccccceeEEE
Q 019326          273 NPYLVASASSDGVICVWDVRMAIKE------KPL------------------------------PLAEA-KTNSRLTCLA  315 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------------------------------~~~~~-~~~~~i~~~~  315 (343)
                         .+++++.||.+++||.+.....      ...                              -+..+ .+..+|+.++
T Consensus       507 ---~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~  583 (910)
T KOG1539|consen  507 ---LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT  583 (910)
T ss_pred             ---eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence               9999999999999999876200      000                              01111 2567899999


Q ss_pred             cCCCCceeccccCCCCCCCccccCc
Q 019326          316 GSSTKSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       316 ~s~~~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      |||||++++....|..++.++.+.+
T Consensus       584 FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  584 FSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eCCCCcEEEEeecCCcEEEEeccCc
Confidence            9999999999999999998887653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.6e-25  Score=184.61  Aligned_cols=265  Identities=12%  Similarity=0.094  Sum_probs=198.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      +..+++++.|+.|++||+.+++.+..+..+  ..+.+++|+|++     +.+ ++++.++.|++||..+++....+..+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~--~~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG--QRPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECC--CCCCceEECCCC-----CEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence            357889999999999999999988888766  446789999998     555 667789999999999988877776544


Q ss_pred             ccEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC-CcEEEEEcccceeEEE
Q 019326          131 KGVNDLAVHHSGKLALTV-GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE-EKVGIHQAEDAKLLCE  207 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~d~~~~~~~~~  207 (343)
                      . +..++|+|+++.++++ +.++.+++||+++.+.+........+..++++|++..++++ .+ ..+.+||..+++....
T Consensus        74 ~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~  152 (300)
T TIGR03866        74 D-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN  152 (300)
T ss_pred             C-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence            3 5678999999877655 56899999999988777666666667889999999999988 44 3567789988877766


Q ss_pred             ecCCcceEEeeec-CCCeEE-EEeCCCcEEEEECCCCceeEEeccccc-------ccEEEEEEEecCCCCCCCCCCeEE-
Q 019326          208 LDGKKRILCAAPG-ENGVLF-TGGEDRSITAWDTNSGKVAYCIEDAHS-------ARVKGIVVLTKNDGGSTAENPYLV-  277 (343)
Q Consensus       208 ~~~~~~i~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~~~l-  277 (343)
                      +.......++.|+ ++..++ ++..++.|++||+.+++.+..+. .+.       .....+++++++.         ++ 
T Consensus       153 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~---------~~~  222 (300)
T TIGR03866       153 VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIKLTKDGK---------TAF  222 (300)
T ss_pred             EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceEECCCCC---------EEE
Confidence            5544556778887 455664 44568999999999998777664 221       1234677888776         64 


Q ss_pred             EEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc-CCCCCCCccccC
Q 019326          278 ASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI-GDSAPKGEEKAS  339 (343)
Q Consensus       278 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~-~~~~~~~~~~~~  339 (343)
                      ++.+.++.|.+||+++++...     .......+.+++|+|++.+++.+. .++.+..++...
T Consensus       223 ~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEVLD-----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEE-----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            444567789999998764221     223345689999999999887754 466666655543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=2e-25  Score=180.94  Aligned_cols=302  Identities=14%  Similarity=0.117  Sum_probs=226.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCC--------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTS--------   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~--------   72 (343)
                      ++++|.++|.|.||+...            .+.......|.+.|.+++.- ...|++|+.|..|..||-.-.        
T Consensus       259 dviTgDS~G~i~Iw~~~~------------~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  259 DVITGDSGGNILIWSKGT------------NRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             CEEeecCCceEEEEeCCC------------ceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCc
Confidence            478999999999999865            22223333899999999998 667888999999999984300        


Q ss_pred             --------------------------------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           73 --------------------------------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        73 --------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                                                      ......++| ......++.+|..     +++++++.|+.+++|+  ..
T Consensus       327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~-----~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSK-----NQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCCh-----hheeeccCcceEEEcc--CC
Confidence                                            011122456 6788899999988     7999999999999999  44


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEc
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQA  199 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~  199 (343)
                      +++.+.. -..++.++.|+|.| .++.|...|...+.|.++...+.......++++++|+|+|..++++ .|+.|++|.+
T Consensus       399 k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  399 KLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             ceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence            5555554 46788999999999 9999999999999999997777777778999999999999999999 9999999988


Q ss_pred             ccce-eEEEec--CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec-----------------ccccccEEE
Q 019326          200 EDAK-LLCELD--GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE-----------------DAHSARVKG  258 (343)
Q Consensus       200 ~~~~-~~~~~~--~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------~~h~~~v~~  258 (343)
                      .... ......  +..+|+.+.|+ +++++.+-+.|-.|..|....-+.....+                 ..|...|..
T Consensus       477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a  556 (626)
T KOG2106|consen  477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINA  556 (626)
T ss_pred             CCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHH
Confidence            7543 333332  44899999999 67899999999999999543322111111                 234455555


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          259 IVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      ++-+...+         ++++|...|+|++|...-.....+.... ..+...|.+++|..+..+++....|..+.++
T Consensus       557 ~~rs~~~~---------~lA~gdd~g~v~lf~yPc~s~rA~~he~-~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW  623 (626)
T KOG2106|consen  557 VARSHCEK---------LLASGDDFGKVHLFSYPCSSPRAPSHEY-GGHSSHVTNVAFLCKDSHLISTGKDTSIMQW  623 (626)
T ss_pred             hhhhhhhh---------hhhccccCceEEEEccccCCCcccceee-ccccceeEEEEEeeCCceEEecCCCceEEEE
Confidence            55555555         9999999999999998755322222222 2345569999999887777766666655544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.5e-25  Score=184.70  Aligned_cols=259  Identities=17%  Similarity=0.160  Sum_probs=206.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecC-CCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA-HLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      +||++=.+|.|.+|++...           .-+...+.+ ....|.+++|. +..|.+.+.+|.|.-||+.+++....+.
T Consensus        39 ~lAvsRt~g~IEiwN~~~~-----------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d  107 (691)
T KOG2048|consen   39 QLAVSRTDGNIEIWNLSNN-----------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID  107 (691)
T ss_pred             ceeeeccCCcEEEEccCCC-----------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec
Confidence            4788889999999999861           222333344 45789999999 9999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee--eeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT--SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      .. .+.|++++.+|.+     ..++.|+.||.+..++...++...  .+...++.|.+++|+|++..+++|+.||.|++|
T Consensus       108 ~~-gg~IWsiai~p~~-----~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  108 SN-GGAIWSIAINPEN-----TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             CC-CcceeEEEeCCcc-----ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            88 8999999999998     799999999988888877765443  333456899999999999999999999999999


Q ss_pred             EccCCceeEEEEc-----CC----cceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeE
Q 019326          158 NLVRGRRSFYHKI-----GK----EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVL  225 (343)
Q Consensus       158 d~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l  225 (343)
                      |..++..+.....     ..    -+.++.+- ....++++ +.|.|.+||...+.+++.+. |...|.+++..+ ++++
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v  260 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV  260 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence            9999987763332     22    13445555 44566777 99999999999999999888 889999999985 4899


Q ss_pred             EEEeCCCcEEEEECCCCce---eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          226 FTGGEDRSITAWDTNSGKV---AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      ++++.|+.|..|...+...   .......|...|.+++..++           .+++|+.|..+.+=
T Consensus       261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----------~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----------ALISGGRDFTLAIC  316 (691)
T ss_pred             EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----------eEEecceeeEEEEc
Confidence            9999999999998876643   22222378888888888776           45555555544443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=9.2e-26  Score=171.27  Aligned_cols=274  Identities=13%  Similarity=0.124  Sum_probs=211.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEE---eEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQ---LFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      +++|++||.|-+||++.......++-..+..+   ...-.+|+-.|..+.|.   ..++.+++.|.++++||..+.+...
T Consensus        59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~  138 (397)
T KOG4283|consen   59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV  138 (397)
T ss_pred             EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence            68999999999999987443222222222222   22335788899999997   6789999999999999999998888


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCCeEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDDCLA  155 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~  155 (343)
                      .|.-.  +.|.+-+++|-..  .-.++++|..+-.|++.|+..+..-+++.+|.+.|.++.|+|... .|++|+.||.|+
T Consensus       139 ~F~me--~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  139 DFKME--GKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             EeecC--ceeehhhcChhhh--cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            88755  7888888887541  114788888899999999999999999999999999999999765 578899999999


Q ss_pred             EEEccCCc-eeE---------------EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE-ec---CCc--
Q 019326          156 MVNLVRGR-RSF---------------YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE-LD---GKK--  212 (343)
Q Consensus       156 ~wd~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-~~---~~~--  212 (343)
                      +||++.-. +..               ...+.+.+..++|..++.+++++ .|..+++|+..+|+.... +.   ++.  
T Consensus       215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~  294 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT  294 (397)
T ss_pred             EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence            99998641 111               11233567889999999999999 999999999988764321 11   111  


Q ss_pred             --ceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          213 --RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       213 --~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                        .+. +..-+...++---.++.+.++++-++..+..+. .|...|.+.++.|+-+         ...++..|+.|..|-
T Consensus       295 ~~~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-~h~k~i~c~~~~~~fq---------~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  295 SFAVH-IQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-THLKRINCAAYRPDFE---------QCFTGDMNGNIYMWS  363 (397)
T ss_pred             cceEE-EeecccceEEEEecCCeEEEEEccCceEEEeee-cccceeeEEeecCchh---------hhhccccCCcccccc
Confidence              111 111133344444456899999999999999999 9999999999988876         899999999999998


Q ss_pred             c
Q 019326          291 V  291 (343)
Q Consensus       291 ~  291 (343)
                      .
T Consensus       364 p  364 (397)
T KOG4283|consen  364 P  364 (397)
T ss_pred             c
Confidence            8

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.6e-25  Score=168.89  Aligned_cols=240  Identities=17%  Similarity=0.228  Sum_probs=187.8

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      +|.+-|+++.|+  |+.+|+|+.|++|+|||....    .+....+.| .+.|..+.|.+..   .++.+++++.|+++.
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah-~~Si~rV~WAhPE---fGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH-DGSIWRVVWAHPE---FGQVVATCSYDRTVS   86 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec-CCcEEEEEecCcc---ccceEEEEecCCcee
Confidence            799999999999  999999999999999996543    556677889 9999999998654   358999999999999


Q ss_pred             EEECC---------CcceeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceeEEEE-------------
Q 019326          114 IFDAD---------PFVLLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRRSFYHK-------------  169 (343)
Q Consensus       114 iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------------  169 (343)
                      ||.-.         ......++......|+++.|.|.  |-.|++++.||.++||+.-..-.+....             
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            99752         22345566667789999999995  6789999999999999876543222221             


Q ss_pred             -cCCcceEEEEeCC---CCEEEEEeCC------cEEEEEcccce-e---EEEec-CCcceEEeeecCC-----CeEEEEe
Q 019326          170 -IGKEASLIKFDGS---GEKFFMVTEE------KVGIHQAEDAK-L---LCELD-GKKRILCAAPGEN-----GVLFTGG  229 (343)
Q Consensus       170 -~~~~~~~~~~~~~---~~~~~~~~~~------~i~~~d~~~~~-~---~~~~~-~~~~i~~~~~~~~-----~~l~~~~  229 (343)
                       ...+..|+.|+|.   .+.|+++.+.      .+.||...... .   +.++. +..+|+.++|.|+     .+|++++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence             2345678888874   4578888555      78888765432 2   22333 8899999999842     3889999


Q ss_pred             CCCcEEEEECCCC--------------------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          230 EDRSITAWDTNSG--------------------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       230 ~dg~i~i~d~~~~--------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      .|| |+||.++..                    +.+..+. .|...|..+.|+-.+.         .|++.|.||.||+|
T Consensus       247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmtGt---------iLsStGdDG~VRLW  315 (361)
T KOG2445|consen  247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMTGT---------ILSSTGDDGCVRLW  315 (361)
T ss_pred             cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeeeee---------EEeecCCCceeeeh
Confidence            999 999998731                    1334455 8999999999999988         99999999999999


Q ss_pred             eccCc
Q 019326          290 DVRMA  294 (343)
Q Consensus       290 d~~~~  294 (343)
                      ...-.
T Consensus       316 kany~  320 (361)
T KOG2445|consen  316 KANYN  320 (361)
T ss_pred             hhhhh
Confidence            87654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=5.6e-26  Score=187.65  Aligned_cols=297  Identities=19%  Similarity=0.225  Sum_probs=230.9

Q ss_pred             CCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCC
Q 019326           23 YSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVP  100 (343)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~  100 (343)
                      .+.+.++++..+...++||++.|.||...  |.+|++|+.||+|+||.+.++++++.+...  +.|.|++|+|...    
T Consensus       381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~----  454 (733)
T KOG0650|consen  381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSD----  454 (733)
T ss_pred             ChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCC----
Confidence            34556778888889999999999999988  999999999999999999999999999866  7999999999984    


Q ss_pred             ceEEEeeCCCeEEEEECCCc-------------------------------------ceeeeeeeccccEEEEEEecCCC
Q 019326          101 RNLFSTSADGFVSIFDADPF-------------------------------------VLLTSVKVHKKGVNDLAVHHSGK  143 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~  143 (343)
                      ..++++.....+.+-+..-|                                     .-+...-.|...|..+.|+..|.
T Consensus       455 ~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD  534 (733)
T KOG0650|consen  455 LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD  534 (733)
T ss_pred             ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence            23444444444555443110                                     00122234778999999999999


Q ss_pred             EEEEEeCC---CeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEee
Q 019326          144 LALTVGRD---DCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAA  218 (343)
Q Consensus       144 ~l~~~~~d---~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~  218 (343)
                      ||++...+   ..|.|+++...+....+ ...+.+.++.|+|...+++++....|++||+..+..++++. ....|..++
T Consensus       535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence            99998764   56889998776644333 45688999999999999999999999999999988887776 566788899


Q ss_pred             ecC-CCeEEEEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc--Cc
Q 019326          219 PGE-NGVLFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR--MA  294 (343)
Q Consensus       219 ~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~  294 (343)
                      .++ |..|+.|+.|+.+..||+.-. ++.+++. .|...+++++|++.-+         ++++|+.||++.|+--.  +.
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va~H~ryP---------Lfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVAFHKRYP---------LFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhhhccccc---------eeeeecCCCcEEEEeeeeehh
Confidence            984 678999999999999999755 5667777 9999999999999988         99999999999998432  22


Q ss_pred             c--ccCCCccccccc-----ccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          295 I--KEKPLPLAEAKT-----NSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       295 ~--~~~~~~~~~~~~-----~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      -  .....|+.....     ...|....|+|...++.++.+++.++.+
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            1  111122222221     1236777799999999999999877653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=189.71  Aligned_cols=307  Identities=16%  Similarity=0.175  Sum_probs=230.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-------------CceEEEeeCCCeEEEEE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-------------GTAAASGGTDDTIHLYD   68 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------------~~~l~s~~~dg~i~iwd   68 (343)
                      .|.+...|..|+|||++....         ......+--|...|..+.--             ...|.|++.|++||+|+
T Consensus       338 klscVYndhSlYvWDvrD~~k---------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  338 KLSCVYNDHSLYVWDVRDVNK---------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             eEEEEEcCceEEEEecccccc---------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            366777899999999987321         22223333577777766431             35699999999999999


Q ss_pred             cCCCeeee-------------------------------------EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           69 LSTSSSLG-------------------------------------AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        69 ~~~~~~~~-------------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ++.+..-.                                     ..... ...+.+++.+|++     ++|++|..-|.
T Consensus       409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~-r~G~R~~~vSp~g-----qhLAsGDr~Gn  482 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS-RFGFRALAVSPDG-----QHLASGDRGGN  482 (1080)
T ss_pred             cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc-ccceEEEEECCCc-----ceecccCccCc
Confidence            97521000                                     00112 3579999999999     89999999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecC---CCEEEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCC--C
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHS---GKLALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSG--E  184 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~--~  184 (343)
                      ++||++...+....+..|...|.|+.|+..   .++|++++.|..|.+||....-.+.  ...+...|+.+.|.-+|  .
T Consensus       483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence            999999998999999999999999999863   4789999999999999997654322  23446789999998877  5


Q ss_pred             EEEEE-eCCcEEEEEccc---ceeEEEec---CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc--cccc
Q 019326          185 KFFMV-TEEKVGIHQAED---AKLLCELD---GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED--AHSA  254 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~---~~~~~~~~---~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~  254 (343)
                      .++++ .|..|..--.+.   +.......   ....+..++..+ .+++++++.|..|+|||+.+++..+.|+.  +|.+
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence            66666 555554433332   22222211   345677888764 47999999999999999999999999984  3455


Q ss_pred             cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          255 RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                      ..-.+...|.+.         ||++.+.|.++.++|.-+++....    .+.+..-|+.+.|++|.+.++...+|+=+..
T Consensus       643 ~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~----m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  643 DLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQ----MTGHSEAVTGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             ceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhh----hcCcchheeeeeecccchhheeecCCceEEE
Confidence            677777778776         999999999999999999864332    3466778999999999999999999985554


Q ss_pred             cc
Q 019326          335 EE  336 (343)
Q Consensus       335 ~~  336 (343)
                      +.
T Consensus       710 W~  711 (1080)
T KOG1408|consen  710 WK  711 (1080)
T ss_pred             EE
Confidence            43

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.9e-27  Score=197.57  Aligned_cols=262  Identities=20%  Similarity=0.303  Sum_probs=195.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC---CCeEEEEec---CceEEEeeCCCeEEEEEcCC---C
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL---SPITTVAVS---GTAAASGGTDDTIHLYDLST---S   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~---~   72 (343)
                      +|++++. ..++||.+.+..        +.......+++..   -.+..+.|.   .++|||++..|.|.+||+..   .
T Consensus        53 qiv~AGr-s~lklyai~~~~--------~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn  123 (839)
T KOG0269|consen   53 QIVVAGR-SLLKLYAINPND--------FSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN  123 (839)
T ss_pred             eeEEecc-cceeeEeeCccc--------CCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc
Confidence            4455554 367788776521        1122222222221   224456676   78999999999999999987   6


Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC-CCEEEEEeCC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS-GKLALTVGRD  151 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d  151 (343)
                      +.+..|..| ...++++.|++..    +.+|++|+.||+|++||++..+...++.+....|.++.|+|. +..++++...
T Consensus       124 k~l~~f~EH-~Rs~~~ldfh~te----p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  124 KLLTVFNEH-ERSANKLDFHSTE----PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             hhhhHhhhh-ccceeeeeeccCC----ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            777788999 9999999999988    689999999999999999999999999988889999999995 5889999999


Q ss_pred             CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEe-cCCcceEEeeecC-CCeEEEEe
Q 019326          152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCEL-DGKKRILCAAPGE-NGVLFTGG  229 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~i~~~~~~~-~~~l~~~~  229 (343)
                      |.+++||++....                                       +..++ .|.++|.|+.|+| +.+||+|+
T Consensus       199 G~lqlWDlRqp~r---------------------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGG  239 (839)
T KOG0269|consen  199 GYLQLWDLRQPDR---------------------------------------CEKKLTAHNGPVLCLNWHPNREWLATGG  239 (839)
T ss_pred             ceEEEeeccCchh---------------------------------------HHHHhhcccCceEEEeecCCCceeeecC
Confidence            9999999986542                                       22222 3888899999986 46999999


Q ss_pred             CCCcEEEEECCCCc--eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc--CCCcEEEEeccCccccCCCccccc
Q 019326          230 EDRSITAWDTNSGK--VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS--SDGVICVWDVRMAIKEKPLPLAEA  305 (343)
Q Consensus       230 ~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~  305 (343)
                      .|++|+|||+.+.+  ++.++.  ...+|..++|-|...        ++|++++  .|-.|+|||++.+-    +|...+
T Consensus       240 RDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPY----IP~~t~  305 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARS--------YHLATCSMVVDTSVHVWDVRRPY----IPYATF  305 (839)
T ss_pred             CCccEEEEeccCCCccceeEEe--ecceeeeeeeccCcc--------chhhhhhccccceEEEEeecccc----ccceee
Confidence            99999999998665  344444  668999999999876        3788776  47789999999752    343333


Q ss_pred             -ccccceeEEEcCCCCceeccccCCC
Q 019326          306 -KTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       306 -~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                       .+...++.++|........+..+++
T Consensus       306 ~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  306 LEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             eccCccccceeccCCCceeeEeecCc
Confidence             3344577788876444444444433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.8e-25  Score=190.51  Aligned_cols=243  Identities=12%  Similarity=0.110  Sum_probs=203.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .|++++.||.|++|+......           ....+.-+...|.+++..+++|++|+.+++|.+|...+++.-..+...
T Consensus        27 fi~tcgsdg~ir~~~~~sd~e-----------~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf   95 (933)
T KOG1274|consen   27 FICTCGSDGDIRKWKTNSDEE-----------EPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARF   95 (933)
T ss_pred             EEEEecCCCceEEeecCCccc-----------CCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeee
Confidence            478999999999999876311           111222278899999999889999999999999999998877666666


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                       .-++.+++|+.++     ++++.|+.|-.|++-+..+......+++|.++|.++.|+|++++|++.+-||.|++||+.+
T Consensus        96 -tlp~r~~~v~g~g-----~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   96 -TLPIRDLAVSGSG-----KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             -eccceEEEEecCC-----cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence             7899999999999     8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEEEc---------CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeecC-CCeEEE
Q 019326          162 GRRSFYHKI---------GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGE-NGVLFT  227 (343)
Q Consensus       162 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~-~~~l~~  227 (343)
                      +........         ...+..++|+|++..+++. .++.|++|+..+......+.   +...+.++.|++ |.|||+
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            875443321         2345669999996666655 99999999999999888887   445599999995 789999


Q ss_pred             EeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          228 GGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ++.+|.|.|||..+-+.    . .....|.+++|.|+.+
T Consensus       250 s~~~g~I~vWnv~t~~~----~-~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  250 STLDGQILVWNVDTHER----H-EFKRAVCCEAWKPNAN  283 (933)
T ss_pred             eccCCcEEEEecccchh----c-cccceeEEEecCCCCC
Confidence            99999999999997222    2 3457899999998876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.5e-27  Score=200.77  Aligned_cols=230  Identities=18%  Similarity=0.295  Sum_probs=205.7

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      +..|...|.|+..-  +..+++|+.|..+-+|.+.....+..+.+| ..+|.++.|++..     .+|++|+.+|+|++|
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~h-espIeSl~f~~~E-----~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGH-ESPIESLTFDTSE-----RLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeecc-CCcceeeecCcch-----hhhcccccCCceeee
Confidence            34688888888865  789999999999999999888888889999 9999999999998     799999999999999


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCc
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                      |++..+.++++.+|...+.++.|+|-+.+.+.++.|..+++||++...+..... +...+.++.|+|+|++++.+ .|..
T Consensus        98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen   98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence            999999999999999999999999999999999999999999999666665555 44667889999999999999 7799


Q ss_pred             EEEEEcccceeEEEec-CCcceEEeeecCCC-eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCC
Q 019326          194 VGIHQAEDAKLLCELD-GKKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                      +++||...++....|. |...+.++.+++.+ +++.|+.|+++++||+++.+.+.... .....|.+++|++++.     
T Consensus       178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~-----  251 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGK-----  251 (825)
T ss_pred             eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCce-----
Confidence            9999999999999999 89999999998654 67789999999999999999888888 6688999999999986     


Q ss_pred             CCCeEEEEEcCC
Q 019326          272 ENPYLVASASSD  283 (343)
Q Consensus       272 ~~~~~l~s~~~d  283 (343)
                          .+++|..+
T Consensus       252 ----~~~~G~q~  259 (825)
T KOG0267|consen  252 ----IVLSGEQI  259 (825)
T ss_pred             ----eeecCchh
Confidence                66666544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9e-26  Score=180.06  Aligned_cols=229  Identities=22%  Similarity=0.286  Sum_probs=183.9

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeee---------------------eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSL---------------------GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      |+++|.|+.|..|.|||+.-...+                     ..-.+| +..|.+|+|+..-.    +.|++|+.|.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gH-Tdavl~Ls~n~~~~----nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGH-TDAVLALSWNRNFR----NVLASGSADK  266 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccc-hHHHHHHHhccccc----eeEEecCCCc
Confidence            789999999999999998622100                     011246 88889999987763    7999999999


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEEccC-CceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVNLVR-GRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      +|++||+.++++..++..|.+.|.++.|+|. ...|++|+.|+++.+.|.|. ..........+.+..++|.|.....+.
T Consensus       267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence            9999999999999999999999999999996 47999999999999999994 334467778899999999997765444


Q ss_pred             E--eCCcEEEEEcccc-eeEEEec-CCcceEEeeec--CCCeEEEEeCCCcEEEEECCCCceeEEeccccc---ccEEEE
Q 019326          189 V--TEEKVGIHQAEDA-KLLCELD-GKKRILCAAPG--ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS---ARVKGI  259 (343)
Q Consensus       189 ~--~~~~i~~~d~~~~-~~~~~~~-~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~---~~v~~~  259 (343)
                      +  .||.++-+|+|+. +++.+++ |..+|.+++++  ..+++++++.|+.|++|++....+-...  .|.   +...|.
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~--~~~~~~~rl~c~  424 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK--EHSFKLGRLHCF  424 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc--cccccccceeec
Confidence            4  8999999999975 8888887 99999999998  3579999999999999998754432221  122   234555


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++.|+-.        .+++.|+..+.++|||+.+..
T Consensus       425 ~~~~~~a--------~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  425 ALDPDVA--------FTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccCCCcc--------eEEEecCccceEEEeecccCh
Confidence            5555544        278899999999999998763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-25  Score=180.34  Aligned_cols=286  Identities=11%  Similarity=0.118  Sum_probs=218.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEe--eCCCeEEEEEcCCC--ee--e
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASG--GTDDTIHLYDLSTS--SS--L   75 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~--~~dg~i~iwd~~~~--~~--~   75 (343)
                      |.+++....+++||....+          ......-......+.++.|+ .+.|+++  +.|..+++|.-...  +.  +
T Consensus         5 l~~aS~gd~~kl~D~s~~~----------~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~   74 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLE----------TKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV   74 (673)
T ss_pred             eeeeccCCceEEeeccccc----------CccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence            4455555689999997622          11111111123348999998 5545554  55778999975432  11  1


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      ....+   ..-.|++.....     .++++|+..+.|+|||++...+.+.+++|...|+++.++....+|++++..|.|.
T Consensus        75 ~k~~g---d~~~Cv~~~s~S-----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii  146 (673)
T KOG4378|consen   75 RKLTG---DNAFCVACASQS-----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII  146 (673)
T ss_pred             ecccc---chHHHHhhhhcc-----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence            11222   233444444444     6999999999999999998778888999999999999999999999999999999


Q ss_pred             EEEccCCceeEEEEcC--CcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec--CCcceEEeeecC--CCeEEE
Q 019326          156 MVNLVRGRRSFYHKIG--KEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGE--NGVLFT  227 (343)
Q Consensus       156 ~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~--~~~l~~  227 (343)
                      +..+.++.....+.++  ..+..+.++|..+.++..  .+|.+.+||+....+...+.  |..+...++|++  ..+|++
T Consensus       147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             EEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            9999999887777765  456689999998877666  88999999999988877665  888888888884  458999


Q ss_pred             EeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccc
Q 019326          228 GGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKT  307 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  307 (343)
                      .+.|..|.+||.+......++.  ...+.+.++|.+++.         +|+.|+..|.|..||++..+  .|..+...+ 
T Consensus       227 VG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~---------~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah-  292 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGT---------YLCAGNSKGELIAYDMRSTK--APVAVRSAH-  292 (673)
T ss_pred             ecccceEEEeecccccccceee--ecCCcceeeecCCce---------EEEeecCCceEEEEecccCC--CCceEeeec-
Confidence            9999999999999888777776  667899999999887         99999999999999999853  333443333 


Q ss_pred             ccceeEEEcCCCC
Q 019326          308 NSRLTCLAGSSTK  320 (343)
Q Consensus       308 ~~~i~~~~~s~~~  320 (343)
                      ...|+|++|-+..
T Consensus       293 ~~sVt~vafq~s~  305 (673)
T KOG4378|consen  293 DASVTRVAFQPSP  305 (673)
T ss_pred             ccceeEEEeeecc
Confidence            3449999997764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=186.31  Aligned_cols=259  Identities=19%  Similarity=0.248  Sum_probs=214.2

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      +|...-+.|+|.  |++|++++.||.|++|+.... +....+..+ ...|.+++...       .+|++|+.+++|.+|.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~-g~~v~~ia~~s-------~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS-GELVSSIACYS-------NHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc-CceeEEEeecc-------cceEEeeccceEEEee
Confidence            688889999998  899999999999999998776 444444435 67888887654       4799999999999999


Q ss_pred             CCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-EEEEcCCcceEEEEeCCCCEEEEE-eCCcE
Q 019326          117 ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-FYHKIGKEASLIKFDGSGEKFFMV-TEEKV  194 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  194 (343)
                      +..++.-..+....-++.+++|+.+|++++.|+.|-.|++.++...... ....+..++.++.++|+++++++. .+|.+
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV  162 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence            9988876666667789999999999999999999999999999876644 455677999999999999999999 99999


Q ss_pred             EEEEcccceeEEEecC---------CcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccc-cccEEEEEEEe
Q 019326          195 GIHQAEDAKLLCELDG---------KKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAH-SARVKGIVVLT  263 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~~---------~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~~  263 (343)
                      ++|++.++.+...+..         ...+..++|++ ++.++....|+.|.+|+...++....+...+ ...+..+.|+|
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP  242 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence            9999999988777651         34466788985 4788888899999999999999888887443 34499999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCcee
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~  323 (343)
                      .|.         |||+++.||.|.|||+++...        ......|.|++|.|+..-+
T Consensus       243 nG~---------YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  243 NGK---------YIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             CCc---------EEeeeccCCcEEEEecccchh--------ccccceeEEEecCCCCCee
Confidence            987         999999999999999997321        2233468888887765544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=167.08  Aligned_cols=239  Identities=19%  Similarity=0.222  Sum_probs=182.8

Q ss_pred             eEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe------------------------------------eee
Q 019326           35 LFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS------------------------------------SLG   76 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~------------------------------------~~~   76 (343)
                      +..+++|.+.|++++|+  |.+|+|++.|+.|++|+++.-.                                    .+.
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            34678999999999999  9999999999999999987310                                    000


Q ss_pred             Ee----------------------c-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccE
Q 019326           77 AI----------------------H-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGV  133 (343)
Q Consensus        77 ~~----------------------~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  133 (343)
                      .+                      . .| ...|..+-...+     ..+|++++.|..|.+|+++ |+.+..+......-
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA~~-----~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIAGN-----AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN  231 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhc-ccceEEEeecCC-----ceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence            00                      0 01 222333333333     3799999999999999999 78898888777777


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCc--------ee-EEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEccc--
Q 019326          134 NDLAVHHSGKLALTVGRDDCLAMVNLVRGR--------RS-FYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAED--  201 (343)
Q Consensus       134 ~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~--  201 (343)
                      ...+.+|+|+++++++..--|++|.+--++        .+ ....+...+..++|+++..+++++ .||.+++||..-  
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            888999999999999999999999874332        11 223345678999999999999999 999999999753  


Q ss_pred             -----ceeEEEec-----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCC
Q 019326          202 -----AKLLCELD-----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       202 -----~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                           .+.++...     ..+....+..+|+.-+++.+....+++|..++++...+++..|+..|.++.|++++.     
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-----  386 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-----  386 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-----
Confidence                 22333331     123344777887666666667788999999999999999889999999999999987     


Q ss_pred             CCCeEEEEEcCCCcEEEEe
Q 019326          272 ENPYLVASASSDGVICVWD  290 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vwd  290 (343)
                          +++|++ |..++++.
T Consensus       387 ----~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  387 ----YIATCG-DRYVRVIR  400 (420)
T ss_pred             ----EEeeec-ceeeeeec
Confidence                888886 67888876

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=3.2e-24  Score=180.08  Aligned_cols=323  Identities=14%  Similarity=0.144  Sum_probs=238.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCC----C-----CcceeeEEe----------EEecCCCCCeEEEEec--CceEEEeeC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSS----D-----QKTLTLTQL----------FSYPAHLSPITTVAVS--GTAAASGGT   60 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~----~-----~~~~~~~~~----------~~~~~h~~~v~~l~~~--~~~l~s~~~   60 (343)
                      -|++++.|..||||.+.......+    +     .+...+...          ..+.||.+.|.++.|+  +..|++++.
T Consensus       208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa  287 (764)
T KOG1063|consen  208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA  287 (764)
T ss_pred             EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence            489999999999999976442110    0     000111111          1234999999999999  668999999


Q ss_pred             CCeEEEEEcCCCe--ee-----eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---cceeeeeeecc
Q 019326           61 DDTIHLYDLSTSS--SL-----GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---FVLLTSVKVHK  130 (343)
Q Consensus        61 dg~i~iwd~~~~~--~~-----~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~  130 (343)
                      |.++.+|...+..  -+     ....+. ........|+|++     +.+++-+..|..++|....   ..+...+.+|.
T Consensus       288 DksmiiW~pd~~tGiWv~~vRlGe~gg~-a~GF~g~lw~~n~-----~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~  361 (764)
T KOG1063|consen  288 DKSMIIWKPDENTGIWVDVVRLGEVGGS-AGGFWGGLWSPNS-----NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV  361 (764)
T ss_pred             CcceEEEecCCccceEEEEEEeeccccc-ccceeeEEEcCCC-----CEEEEecccCcEEEEeccCccceeecccccccc
Confidence            9999999876542  22     222333 5668899999999     7999999999999998432   23455667899


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-----eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc--
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-----RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA--  202 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~--  202 (343)
                      +.|.+++|+|.|.+|++++.|.+-+++-.-..+     ..+.+.++....|+++-+..-.|+.+ .+..+++|+....  
T Consensus       362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             ccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence            999999999999999999999999998755222     12334456778899998876777777 7777888875321  


Q ss_pred             -----------------------------------------ee----EE------------------------------E
Q 019326          203 -----------------------------------------KL----LC------------------------------E  207 (343)
Q Consensus       203 -----------------------------------------~~----~~------------------------------~  207 (343)
                                                               ..    ..                              -
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                                                     00    00                              0


Q ss_pred             ecCCcceEEeeecC-CCeEEEEeCCC-----cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          208 LDGKKRILCAAPGE-NGVLFTGGEDR-----SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       208 ~~~~~~i~~~~~~~-~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      +.|...|.+++.++ ++++++++...     .|++|+..+....+.+. +|+-.|+.|+|+|++.         +|++.|
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~---------~LLsvs  591 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGR---------YLLSVS  591 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECCCCc---------EEEEee
Confidence            11456789999984 67888877543     49999999999999999 9999999999999998         999999


Q ss_pred             CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccCc
Q 019326          282 SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      .|.++.+|...........-.....+..-|...+|+|+.++.+.++.|+..+.++..+.
T Consensus       592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999997653322221112223334788999999999999999999887776554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=173.96  Aligned_cols=266  Identities=15%  Similarity=0.135  Sum_probs=218.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCeee--e
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSSL--G   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~--~   76 (343)
                      .|++++.||.+++|.+..        +.  ...++.+.-...||.+.+|.  |. .+++++....+..||+.+.+..  .
T Consensus       227 lllvaG~d~~lrifqvDG--------k~--N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~  296 (514)
T KOG2055|consen  227 LLLVAGLDGTLRIFQVDG--------KV--NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK  296 (514)
T ss_pred             eEEEecCCCcEEEEEecC--------cc--ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence            378999999999999985        22  22445555567899999998  66 8999999999999999987653  3


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      ...+++...+.....++++     ++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+|.|.+
T Consensus       297 ~~~g~e~~~~e~FeVShd~-----~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  297 PPYGVEEKSMERFEVSHDS-----NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             CCCCcccchhheeEecCCC-----CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            3445545678888999999     799999999999999999999999998 5788999999999999999999999999


Q ss_pred             EEccCCceeEEEEcCCcce--EEEEeCCCCEEEEE-eCCcEEEEEccc------ceeEEEec-CCcceEEeeecC-CCeE
Q 019326          157 VNLVRGRRSFYHKIGKEAS--LIKFDGSGEKFFMV-TEEKVGIHQAED------AKLLCELD-GKKRILCAAPGE-NGVL  225 (343)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~i~~~d~~~------~~~~~~~~-~~~~i~~~~~~~-~~~l  225 (343)
                      ||++...++..+...+.+.  .++.++++.+++++ ..|.|.|||..+      .+++..+. ....|+++.|++ ..+|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            9999998888887776654  47778999999999 889999999654      34444444 567799999984 5677


Q ss_pred             EEEeC--CCcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          226 FTGGE--DRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       226 ~~~~~--dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +.++.  +..+++-.+.+......++.  ..-+.|+||+|+|.+.         +||.|..+|++.+|.+.
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG---------~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG---------YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc---------eEEeecCCCceeeEeec
Confidence            76664  67799999888777766662  2335789999999887         99999999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.6e-25  Score=169.71  Aligned_cols=265  Identities=17%  Similarity=0.209  Sum_probs=199.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      ++|++.++|.|++||..+            ...+..+++|...++.++|.    +..+.+|+.||+|++||+++......
T Consensus        42 ~vav~lSngsv~lyd~~t------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~  109 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGT------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR  109 (376)
T ss_pred             eEEEEecCCeEEEEeccc------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh
Confidence            589999999999999887            45677788999999999997    67899999999999999998766554


Q ss_pred             e--ccCCCCCeEEEEEeCCCCCCCCceEEEeeC----CCeEEEEECCCcce-eeee-eeccccEEEEEEecCC-CEEEEE
Q 019326           78 I--HHHESSSVTSLAFYTPQNLSVPRNLFSTSA----DGFVSIFDADPFVL-LTSV-KVHKKGVNDLAVHHSG-KLALTV  148 (343)
Q Consensus        78 ~--~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~-~~l~~~  148 (343)
                      +  ..+...+..+++..-++     +.+++|..    +-.|.+||++..+. +..+ ..|...|+++.|+|+. ++|++|
T Consensus       110 ~~~~~~~~~~f~~ld~nck~-----~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG  184 (376)
T KOG1188|consen  110 ISWTQQSGTPFICLDLNCKK-----NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG  184 (376)
T ss_pred             eeccCCCCCcceEeeccCcC-----CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence            4  34422467777776555     57777754    56899999987665 5554 5799999999999965 899999


Q ss_pred             eCCCeEEEEEccCCc----eeEEEEcCCcceEEEEeCCC--CEEEEEeCCcEEEEEcccceeEEEecCC-----------
Q 019326          149 GRDDCLAMVNLVRGR----RSFYHKIGKEASLIKFDGSG--EKFFMVTEEKVGIHQAEDAKLLCELDGK-----------  211 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------  211 (343)
                      +.||-|.++|++...    ....+.....|..+.|..++  +.+.........+|+++.+.....+..+           
T Consensus       185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~  264 (376)
T KOG1188|consen  185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED  264 (376)
T ss_pred             cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence            999999999997653    23455566789999999887  5444448999999999988765555422           


Q ss_pred             ---cceEEeeecCCCeEEEEeC-CCcEEEEECC------CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          212 ---KRILCAAPGENGVLFTGGE-DRSITAWDTN------SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       212 ---~~i~~~~~~~~~~l~~~~~-dg~i~i~d~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                         .-|.+....+...++.++. -|...++-+.      ..+.+..+..+|...|+++.|...+.         ++.||+
T Consensus       265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~---------~l~TGG  335 (376)
T KOG1188|consen  265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND---------VLYTGG  335 (376)
T ss_pred             hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc---------eeeccC
Confidence               1133333334445544444 5666555443      23456677756888899999987776         999999


Q ss_pred             CCCcEEEEecc
Q 019326          282 SDGVICVWDVR  292 (343)
Q Consensus       282 ~dg~i~vwd~~  292 (343)
                      +||.+.+|...
T Consensus       336 EDG~l~~Wk~~  346 (376)
T KOG1188|consen  336 EDGLLQAWKVE  346 (376)
T ss_pred             CCceEEEEecC
Confidence            99999999974

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=7.9e-25  Score=175.20  Aligned_cols=229  Identities=17%  Similarity=0.260  Sum_probs=176.5

Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----------ceeeeeeeccccEEEEEEecCC-CEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----------VLLTSVKVHKKGVNDLAVHHSG-KLALTV  148 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~  148 (343)
                      .| .+.|+.+.+.|..    +..+++.+..+.|+|||....          .+-..+.+|...-.+++|++.. ..|+++
T Consensus       122 ~h-~gEVnRaRymPQn----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NH-DGEVNRARYMPQN----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cC-CccchhhhhCCCC----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            35 7899999999987    578888899999999998432          2223788999878889999864 589999


Q ss_pred             eCCCeEEEEEccCCce--------eEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccc--ceeEEEec-CCcceE
Q 019326          149 GRDDCLAMVNLVRGRR--------SFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAED--AKLLCELD-GKKRIL  215 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~--~~~~~~~~-~~~~i~  215 (343)
                      +.|++|.+||+.....        .....+...+..++|++....++.+  .|+.+.|||+++  .++..... |..++.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            9999999999976543        2233445778889999976655444  899999999995  44444444 889999


Q ss_pred             Eeeec--CCCeEEEEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          216 CAAPG--ENGVLFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       216 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      |++|+  ++..||+|+.|++|.+||+|+. +++..+. +|...|..|.|+|....        .||+++.|+++.|||+.
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~et--------vLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNET--------VLASSGTDRRLNVWDLS  347 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCc--------eeEecccCCcEEEEecc
Confidence            99998  4679999999999999999986 4677888 99999999999998764        89999999999999997


Q ss_pred             CccccC---------CCc-ccccccccceeEEEcCCCCce
Q 019326          293 MAIKEK---------PLP-LAEAKTNSRLTCLAGSSTKSF  322 (343)
Q Consensus       293 ~~~~~~---------~~~-~~~~~~~~~i~~~~~s~~~~~  322 (343)
                      .-...+         +.. +....+...|.-++|.|+...
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            653222         111 122234456777777765544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=164.62  Aligned_cols=263  Identities=16%  Similarity=0.207  Sum_probs=204.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      -||+|+.||.|.|||+.+            +.....+.+|..+|++++|+  |..|+|++.|..|.+||+..|.++..+.
T Consensus        37 ~lAvGc~nG~vvI~D~~T------------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   37 YLAVGCANGRVVIYDFDT------------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             eeeeeccCCcEEEEEccc------------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            389999999999999988            45667778999999999999  9999999999999999999999999988


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee--c----cccEEEEEEecCCCEEEEEeCCCe
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV--H----KKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~----~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                      ..  ++|+...|+|...    +.+++.-.+..-.+-++...  .+.+-.  .    +....+..|++.|+++++|...|.
T Consensus       105 f~--spv~~~q~hp~k~----n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk  176 (405)
T KOG1273|consen  105 FD--SPVWGAQWHPRKR----NKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK  176 (405)
T ss_pred             cc--CccceeeeccccC----CeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence            65  8999999999873    55555555555566666542  222211  0    112223358889999999999999


Q ss_pred             EEEEEccCCceeEEEEcC--CcceEEEEeCCCCEEEEE-eCCcEEEEEcccc-------eeE--EEec---CCcceEEee
Q 019326          154 LAMVNLVRGRRSFYHKIG--KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA-------KLL--CELD---GKKRILCAA  218 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~-------~~~--~~~~---~~~~i~~~~  218 (343)
                      +.++|..+.+++..+...  ..+..+.++..|+.+++- .|..|+.|+++.-       ++.  ++++   ....-.+++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence            999999999887766654  578889999999999999 9999999998731       111  1111   344566788


Q ss_pred             ec-CCCeEEEEeC-CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          219 PG-ENGVLFTGGE-DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       219 ~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |+ ++.|+++++. ...++||....|..++.+....+.....+.|+|-..         .+++- ..|.+++|.....
T Consensus       257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp---------~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP---------IIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee---------eeeec-cCCceEEEEeecc
Confidence            87 5667766653 456999999999999999833347788999999986         66666 7899999998753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-23  Score=151.96  Aligned_cols=268  Identities=14%  Similarity=0.138  Sum_probs=202.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCee------ee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSS------LG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~------~~   76 (343)
                      |++|..+|.|.++.+..-.  +.+.++....++..+++|.++|+.++|...+|++|+. |.|+-|.......      +.
T Consensus        25 l~agn~~G~iav~sl~sl~--s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lw  101 (325)
T KOG0649|consen   25 LFAGNLFGDIAVLSLKSLD--SGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLW  101 (325)
T ss_pred             EEEecCCCeEEEEEehhhh--ccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhh
Confidence            7899999999999987522  1112222344566668999999999999989998885 9999997754321      11


Q ss_pred             Eec--cC----CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC
Q 019326           77 AIH--HH----ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus        77 ~~~--~~----~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  150 (343)
                      +.+  -+    +-..|+++...|..     +-++.++.|+.++-||+++++...++++|++.|.++.-......+++|+.
T Consensus       102 e~~~P~~~~~~evPeINam~ldP~e-----nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E  176 (325)
T KOG0649|consen  102 EVKIPMQVDAVEVPEINAMWLDPSE-----NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE  176 (325)
T ss_pred             hhcCccccCcccCCccceeEeccCC-----CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC
Confidence            111  11    13578999999887     56666779999999999999999999999999999998666678999999


Q ss_pred             CCeEEEEEccCCceeEEEEcCCc---------ceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC
Q 019326          151 DDCLAMVNLVRGRRSFYHKIGKE---------ASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE  221 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~  221 (343)
                      ||++++||.++++.+........         -...++.-+...++++....+.+|.++..++...++-+.++..+.| .
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F-~  255 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDF-V  255 (325)
T ss_pred             CccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeee-e
Confidence            99999999999998776654221         1225566678899999999999999999999999999999999999 5


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      ++.+++++..+.|.-|.+. |..-...+ ......++..++...-        ++|-.++....+.|+
T Consensus       256 ~d~vl~~G~g~~v~~~~l~-Gvl~a~ip-~~s~~c~s~s~~~~p~--------k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  256 DDCVLIGGEGNHVQSYTLN-GVLQANIP-VESTACYSASWQTSPI--------KFISIAGFSNKLHIL  313 (325)
T ss_pred             cceEEEeccccceeeeeec-cEEEEecc-CCccceeeecccCCce--------EEEEecccceeeeee
Confidence            6677788888899999876 55555555 3334445554443332        256666777777776

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=9.4e-25  Score=168.05  Aligned_cols=296  Identities=16%  Similarity=0.144  Sum_probs=210.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe--cCCCCCeEEEEec------CceEEEeeCCCeEEEEEcCCCee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY--PAHLSPITTVAVS------GTAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      +++....+.+.+|+....       -  ....++.+  ..|...-..++|.      ..++|.|+.-|.|+|.|+.++++
T Consensus        57 vfatvG~~rvtiy~c~~d-------~--~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~  127 (385)
T KOG1034|consen   57 VFATVGGNRVTIYECPGD-------G--GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC  127 (385)
T ss_pred             eEEEeCCcEEEEEEECCc-------c--ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh
Confidence            344444468889988752       1  12223333  2477778888886      35799999999999999999999


Q ss_pred             eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee---eeccccEEEEEEecCCCEEEEEeCC
Q 019326           75 LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV---KVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        75 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      ...+.+| ...|+.|.++|..    ++++++++.|.+|++|++++..++..+   .+|.+.|.++.|++++.++++++.|
T Consensus       128 ~~~~~gh-G~sINeik~~p~~----~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  128 SKNYRGH-GGSINEIKFHPDR----PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             ccceecc-CccchhhhcCCCC----CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence            9999999 9999999999998    689999999999999999999999887   4699999999999999999999999


Q ss_pred             CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCC
Q 019326          152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      .+|++|++...+.....+.     ...|+|++...-.- .....+.+..     ..-.|...|-|+.| -++++++=+-+
T Consensus       203 hslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfp-t~~~~fp~fs-----t~diHrnyVDCvrw-~gd~ilSksce  270 (385)
T KOG1034|consen  203 HSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFP-TPKTHFPDFS-----TTDIHRNYVDCVRW-FGDFILSKSCE  270 (385)
T ss_pred             ceEEEEecChhHHhhhhhh-----hcccCCCCccCcCC-cccccccccc-----ccccccchHHHHHH-HhhheeecccC
Confidence            9999999985432111110     12333332210000 0000011110     11127788888888 56899999999


Q ss_pred             CcEEEEECC-CCc-------------eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          232 RSITAWDTN-SGK-------------VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       232 g~i~i~d~~-~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                      +.|..|... -.+             .+.++. .....|+-+.|.-+.-       +++||.|...|.|.+||++.....
T Consensus       271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  271 NAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             ceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCc
Confidence            999999872 111             223333 3344566666554432       228999999999999999987544


Q ss_pred             CCCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          298 KPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       298 ~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                      ....+.....+..|...+||.|+++++....++.+
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV  377 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcE
Confidence            33444445556789999999999999988887754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=8e-24  Score=177.74  Aligned_cols=306  Identities=17%  Similarity=0.176  Sum_probs=233.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--C---ceEEEeeCCCeEEEEEcCCCe---
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--G---TAAASGGTDDTIHLYDLSTSS---   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~---~~l~s~~~dg~i~iwd~~~~~---   73 (343)
                      -|+.|+.+..|.++.-..          -++..+..+.||.+.|.+++|.  +   -+|++++.|..||||.+.-+.   
T Consensus       161 lla~Ggs~~~v~~~s~~~----------d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~  230 (764)
T KOG1063|consen  161 LLACGGSKFVVDLYSSSA----------DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED  230 (764)
T ss_pred             EEEecCcceEEEEeccCC----------cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc
Confidence            478888888888887553          2578889999999999999998  2   378999999999999875221   


Q ss_pred             ------------------ee----------eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee--
Q 019326           74 ------------------SL----------GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL--  123 (343)
Q Consensus        74 ------------------~~----------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--  123 (343)
                                        ..          ..+.+| ...|+++.|+|.+     ..|++++.|.++.+|...+..-+  
T Consensus       231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH-eDWV~sv~W~p~~-----~~LLSASaDksmiiW~pd~~tGiWv  304 (764)
T KOG1063|consen  231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH-EDWVYSVWWHPEG-----LDLLSASADKSMIIWKPDENTGIWV  304 (764)
T ss_pred             ccccccccccccCCceeeeeeeEEEEEehhhhhcCc-ccceEEEEEccch-----hhheecccCcceEEEecCCccceEE
Confidence                              11          112378 9999999999998     78999999999999988654211  


Q ss_pred             -----eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc----eeEEEEcCCcceEEEEeCCCCEEEEE-eCCc
Q 019326          124 -----TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR----RSFYHKIGKEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       124 -----~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                           ...-+....-....|+|+++.+++-+..|..++|......    ......+-..|..++|+|.|++++++ .|.+
T Consensus       305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccc
Confidence                 2222334568889999999999999999999999833321    12233344779999999999999999 8999


Q ss_pred             EEEEEcc-cceeEEEec----CCcceEEeeecC-CCeEEEEeCCCcEEEEECCC--------------------------
Q 019326          194 VGIHQAE-DAKLLCELD----GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNS--------------------------  241 (343)
Q Consensus       194 i~~~d~~-~~~~~~~~~----~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~--------------------------  241 (343)
                      -++|-.- .......+.    |...++|+++-+ +-.+++|.+...+|+|+...                          
T Consensus       385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V  464 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV  464 (764)
T ss_pred             eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence            9998655 222223332    778899999987 56788888889999998753                          


Q ss_pred             -----------------Cc---------------------------------eeEEecccccccEEEEEEEecCCCCCCC
Q 019326          242 -----------------GK---------------------------------VAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       242 -----------------~~---------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                                       |.                                 .+..+ -+|...|.+++.+|+++     
T Consensus       465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gn-----  538 (764)
T KOG1063|consen  465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGN-----  538 (764)
T ss_pred             ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCC-----
Confidence                             00                                 01122 38899999999999988     


Q ss_pred             CCCeEEEEEcCCC-----cEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          272 ENPYLVASASSDG-----VICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       272 ~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                          ++||++...     .|++|+..+....+..+    .+.-.|+.|+||||++|+.+.+.|.....++.
T Consensus       539 ----liASaCKS~~~ehAvI~lw~t~~W~~~~~L~----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  539 ----LIASACKSSLKEHAVIRLWNTANWLQVQELE----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ----EEeehhhhCCccceEEEEEeccchhhhheec----ccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence                999998653     59999999876444232    33446999999999999999999997776665

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.4e-24  Score=171.15  Aligned_cols=239  Identities=18%  Similarity=0.202  Sum_probs=180.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCC-C------CCCcce--eeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHY-S------SDQKTL--TLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDL   69 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~-~------~~~~~~--~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~   69 (343)
                      -+|+|+-|-.|.|||+.-.... |      ...+..  ..+.-..-.+|+..|.+|+|+   .+.||+|+.|.+|++||+
T Consensus       194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~  273 (463)
T KOG0270|consen  194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV  273 (463)
T ss_pred             eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence            3789999999999998653211 0      000000  111122234799999999998   789999999999999999


Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee-eeeeeccccEEEEEEecCC-CEEEE
Q 019326           70 STSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL-TSVKVHKKGVNDLAVHHSG-KLALT  147 (343)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~-~~l~~  147 (343)
                      .++++...+..| ...|.++.|+|..    +..|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.|.. ..+++
T Consensus       274 ~~g~p~~s~~~~-~k~Vq~l~wh~~~----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  274 DTGKPKSSITHH-GKKVQTLEWHPYE----PSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             CCCCcceehhhc-CCceeEEEecCCC----ceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence            999999999977 9999999999988    689999999999999999843322 2333 56789999999965 67788


Q ss_pred             EeCCCeEEEEEccCC-ceeEE-EEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC---cceEEeeec
Q 019326          148 VGRDDCLAMVNLVRG-RRSFY-HKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK---KRILCAAPG  220 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~  220 (343)
                      +..||+++-+|+|.. +++.. ..+..+|+++++++....+++.  .++.+++|++..........|.   +...|+++.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~  427 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD  427 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence            889999999999986 55554 4566899999999876655444  8999999998765543333322   235555555


Q ss_pred             C--CCeEEEEeCCCcEEEEECCCCceeE
Q 019326          221 E--NGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       221 ~--~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      +  ...++.|+..+.+++||+.+...+.
T Consensus       428 ~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  428 PDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CCcceEEEecCccceEEEeecccChhHH
Confidence            3  3588889999999999998776543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=161.20  Aligned_cols=235  Identities=17%  Similarity=0.217  Sum_probs=180.7

Q ss_pred             eEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce
Q 019326           45 ITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL  122 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  122 (343)
                      -.|+.|+  |.+||+|+.||.|.|||+.|...-+.+.+| ..+|++++|++++     +.|++++.|..|.+||+..+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dg-----r~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDG-----RKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCC-----CEeeeecCCceeEEEeccCCCc
Confidence            7899999  999999999999999999999988889999 9999999999999     8999999999999999999999


Q ss_pred             eeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE-----cCCcceEEEEeCCCCEEEEE-eCCcEE
Q 019326          123 LTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK-----IGKEASLIKFDGSGEKFFMV-TEEKVG  195 (343)
Q Consensus       123 ~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~i~  195 (343)
                      ++.++ ...+|+...|+|.. +..++.-.+..-.+.++..........     ......+..|.+.|++++++ ..|.+.
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll  178 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL  178 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence            99988 68899999999965 333333344445555555433221111     11223445689999999999 999999


Q ss_pred             EEEcccceeEEEecC--CcceEEeeec-CCCeEEEEeCCCcEEEEECCCC-------c--eeEEecc-cccccEEEEEEE
Q 019326          196 IHQAEDAKLLCELDG--KKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG-------K--VAYCIED-AHSARVKGIVVL  262 (343)
Q Consensus       196 ~~d~~~~~~~~~~~~--~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~--~~~~~~~-~h~~~v~~~~~~  262 (343)
                      +|+..+.+++..++-  ...|..+.++ .++.|+..+.|+.|+.|+++.-       +  +.+.+.+ -....=.+++|+
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            999999999988873  3678888887 6789999999999999998621       1  1111110 012334566777


Q ss_pred             ecCCCCCCCCCCeEEEEEcC-CCcEEEEeccCcc
Q 019326          263 TKNDGGSTAENPYLVASASS-DGVICVWDVRMAI  295 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~  295 (343)
                      .++.         ++++++. -..++||.-..+.
T Consensus       259 ~dge---------Yv~a~s~~aHaLYIWE~~~Gs  283 (405)
T KOG1273|consen  259 GDGE---------YVCAGSARAHALYIWEKSIGS  283 (405)
T ss_pred             CCcc---------EEEeccccceeEEEEecCCcc
Confidence            7766         7776663 4679999998874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=9e-23  Score=161.37  Aligned_cols=276  Identities=18%  Similarity=0.174  Sum_probs=208.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC--------C
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS--------T   71 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~--------~   71 (343)
                      +|++|+.|..|++|.++..++.   +...+..-...+..|...|+++.|+  |+.||+|+.+|.|.+|...        +
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~---~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~  104 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPG---GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT  104 (434)
T ss_pred             ceecccCccceeeeeeeecCCC---CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence            6899999999999999875443   2225667778888999999999999  8899999999999999876        2


Q ss_pred             --------CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC
Q 019326           72 --------SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK  143 (343)
Q Consensus        72 --------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  143 (343)
                              ......+.+| ...|..++|+|++     .++++++.|+++++||+..|+....+..|...|..++|.|-++
T Consensus       105 e~~~~ke~w~v~k~lr~h-~~diydL~Ws~d~-----~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  105 EADLNKEKWVVKKVLRGH-RDDIYDLAWSPDS-----NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             hhhhCccceEEEEEeccc-ccchhhhhccCCC-----ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                    1223455677 8999999999999     8999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEc------------------------CCcceEEEEeCCCCEEEEEe-----CCcE
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKI------------------------GKEASLIKFDGSGEKFFMVT-----EEKV  194 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~-----~~~i  194 (343)
                      ++++-+.|...+.+.+...+.......                        +.....++|+|+|..+++..     .+.+
T Consensus       179 yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~  258 (434)
T KOG1009|consen  179 YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGV  258 (434)
T ss_pred             hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCce
Confidence            999999998777777655443322210                        11234578899999988762     3333


Q ss_pred             -----EEEEccc-ceeEEEecC-CcceEEeee-----------------c-CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          195 -----GIHQAED-AKLLCELDG-KKRILCAAP-----------------G-ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       195 -----~~~d~~~-~~~~~~~~~-~~~i~~~~~-----------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                           ++|+-.. .++...++. ..+...+.+                 . +-+.+++-.....|++||.++..++....
T Consensus       259 ~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~  338 (434)
T KOG1009|consen  259 FRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD  338 (434)
T ss_pred             eeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe
Confidence                 3333221 122222221 111111111                 1 33444444456689999999999999998


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +-|-..|+.++|++++.         .|+..|.||...+-.++..+
T Consensus       339 nihy~~iTDiaws~dg~---------~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  339 NIHYSAITDIAWSDDGS---------VLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             eeeeeeecceeecCCCc---------EEEEeccCCceEEEEEcchh
Confidence            88999999999999988         99999999998887777654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.5e-23  Score=164.19  Aligned_cols=234  Identities=23%  Similarity=0.265  Sum_probs=177.0

Q ss_pred             EEeccCCeEEEEEeecCCC----CCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeee-
Q 019326            4 IAGSYEKFIWGYKLKPSNH----YSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSL-   75 (343)
Q Consensus         4 ~~g~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~-   75 (343)
                      ++=+..|.|+||++.....    +....+.....+++++.+|...=..|+|+   ...|++|..-+.|++|...++.-. 
T Consensus       169 aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v  248 (440)
T KOG0302|consen  169 ASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV  248 (440)
T ss_pred             eeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee
Confidence            4556789999999865221    11112335678899999999999999999   466899998999999999887532 


Q ss_pred             --eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc---ceeeeeeeccccEEEEEEecCCCEEEEEeC
Q 019326           76 --GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF---VLLTSVKVHKKGVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus        76 --~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  150 (343)
                        ..|.+| +..|-.|+|+|...    ..|++|+.||+|+|||++.+   .++.+ +.|.+.|+.|.|+..-.+|++|+.
T Consensus       249 d~~Pf~gH-~~SVEDLqWSptE~----~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  249 DQRPFTGH-TKSVEDLQWSPTED----GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cCcccccc-ccchhhhccCCccC----ceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCC
Confidence              345677 99999999999884    79999999999999999887   33433 789999999999998889999999


Q ss_pred             CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeecC--CCeEEE
Q 019326          151 DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE--NGVLFT  227 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~~  227 (343)
                      ||+++|||++.-+.                                     ++++..++ |..+|+++.|++  ...|++
T Consensus       323 dGt~~iwDLR~~~~-------------------------------------~~pVA~fk~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKS-------------------------------------GQPVATFKYHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             CceEEEEEhhhccC-------------------------------------CCcceeEEeccCCeeEEEeccccCceEEe
Confidence            99999999987542                                     24445555 778888888873  457888


Q ss_pred             EeCCCcEEEEECCCCce-----------e----EEecccc--cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          228 GGEDRSITAWDTNSGKV-----------A----YCIEDAH--SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~-----------~----~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      ++.|..|.+||+.-..-           +    ..+..-|  ...+..+.|++.-++        +|++.+.|| +.||
T Consensus       366 sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--------~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--------LLVSTAIDG-FNVF  435 (440)
T ss_pred             ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--------eEEEecccc-eeEE
Confidence            88888888888753110           0    0111134  346778888887654        899999998 4444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=9.4e-24  Score=165.39  Aligned_cols=204  Identities=18%  Similarity=0.295  Sum_probs=162.5

Q ss_pred             CCCCCeEEEEec----CceEEEeeCCCeEEEEEcCC----------------CeeeeEeccCCCCCeEEEEEeCCCCCCC
Q 019326           40 AHLSPITTVAVS----GTAAASGGTDDTIHLYDLST----------------SSSLGAIHHHESSSVTSLAFYTPQNLSV   99 (343)
Q Consensus        40 ~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~   99 (343)
                      +|.+.++-+.-.    ..+.++-+..|.|+||++..                .+++.++.+| ...=..|+|+|-..   
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~~~---  224 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPIKT---  224 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-Cccceeeecccccc---
Confidence            577777777665    34566677889999999852                3567788888 88899999999542   


Q ss_pred             CceEEEeeCCCeEEEEECCCcce---eeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEcCCcce
Q 019326          100 PRNLFSTSADGFVSIFDADPFVL---LTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEAS  175 (343)
Q Consensus       100 ~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  175 (343)
                       ..|++|..-+.|++|...++.-   ...+.+|+..|-.++|+|.. ..|++|+-||+|+|||+|.+...          
T Consensus       225 -g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~----------  293 (440)
T KOG0302|consen  225 -GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK----------  293 (440)
T ss_pred             -cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc----------
Confidence             4689999999999999877542   23456799999999999965 78999999999999999987421          


Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCC---CceeEEeccc
Q 019326          176 LIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNS---GKVAYCIEDA  251 (343)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~  251 (343)
                                                 ..+..-.|.+.|+.+.|+. ..+|++|+.||+++|||+++   ++++..+. .
T Consensus       294 ---------------------------~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~  345 (440)
T KOG0302|consen  294 ---------------------------AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-Y  345 (440)
T ss_pred             ---------------------------ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-e
Confidence                                       1111123666777788863 34899999999999999975   56888999 9


Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |..+|++|.|+|....        .|++++.|..|.+||+.-.
T Consensus       346 Hk~pItsieW~p~e~s--------~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  346 HKAPITSIEWHPHEDS--------VIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ccCCeeEEEeccccCc--------eEEeccCCCcEEEEEeecc
Confidence            9999999999998764        7899999999999999654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.3e-25  Score=187.78  Aligned_cols=211  Identities=18%  Similarity=0.227  Sum_probs=187.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++|+.|..+-+|.+..            ...+..+.+|..+|.|+.|+  ..+|++|+.+|+|++||++.++.++.+.+
T Consensus        43 ~~~Gg~~~k~~L~~i~k------------p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg  110 (825)
T KOG0267|consen   43 LVTGGEDEKVNLWAIGK------------PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG  110 (825)
T ss_pred             eccCCCceeeccccccC------------CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc
Confidence            56778888888888765            34555688999999999999  67889999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      | ...+..+.|+|-+     .++++|+.|+.+.+||.+..-+...+.+|...|..+.|+|+|++++.++.|.++++||+.
T Consensus       111 h-~~~~~sv~f~P~~-----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  111 H-LLNITSVDFHPYG-----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             c-ccCcceeeeccce-----EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            9 9999999999999     899999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCC-CeEEEEeCC
Q 019326          161 RGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGEN-GVLFTGGED  231 (343)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~d  231 (343)
                      .|+....+. +...+..+.|+|..-.++.+ .|..+++||+++.+.+.... ....|.+..|++. ..+++|...
T Consensus       185 agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  185 AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            999887776 66889999999999999999 99999999999998887776 5678999999854 455555443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=1.1e-23  Score=160.00  Aligned_cols=203  Identities=19%  Similarity=0.232  Sum_probs=169.7

Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc------------ee---eeeeeccccEEEEEEec-CC
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV------------LL---TSVKVHKKGVNDLAVHH-SG  142 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~---~~~~~~~~~v~~i~~~~-~~  142 (343)
                      ..| .+.|+++.+.+..    ++++++|+.||.|.+||++...            ++   ..-.+|+-.|.++.|-| |.
T Consensus        40 r~H-gGsvNsL~id~te----grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   40 RPH-GGSVNSLQIDLTE----GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             ccC-CCccceeeecccc----ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            456 8999999999887    4899999999999999996432            11   11125777899999998 45


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEec-CCcceEEe
Q 019326          143 KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCA  217 (343)
Q Consensus       143 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~  217 (343)
                      .++.+++.|.++++||..+.+....+..++.|..-+++|-..   +++++ .+-.|++.|+.+|.....+. |...|.++
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence            688899999999999999999999999999999999988543   56666 78899999999999999998 88999999


Q ss_pred             eecCC--CeEEEEeCCCcEEEEECCCC-ceeEEe-------------cccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          218 APGEN--GVLFTGGEDRSITAWDTNSG-KVAYCI-------------EDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       218 ~~~~~--~~l~~~~~dg~i~i~d~~~~-~~~~~~-------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      .|++.  -.|++|+.||.|++||++.. -++..+             ..+|.+.|++++|..++.         ++++.+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---------~l~~~g  265 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---------YLASCG  265 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---------hhhhcc
Confidence            99964  37899999999999999753 122221             137888999999999988         999999


Q ss_pred             CCCcEEEEeccCcc
Q 019326          282 SDGVICVWDVRMAI  295 (343)
Q Consensus       282 ~dg~i~vwd~~~~~  295 (343)
                      .|.++++|+..++.
T Consensus       266 td~r~r~wn~~~G~  279 (397)
T KOG4283|consen  266 TDDRIRVWNMESGR  279 (397)
T ss_pred             CccceEEeecccCc
Confidence            99999999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=5e-23  Score=165.12  Aligned_cols=267  Identities=17%  Similarity=0.235  Sum_probs=203.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeee--E
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLG--A   77 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~--~   77 (343)
                      +++|..-|+|-+||+...+        .....+..+..|..+|.+|.|+   ...+++.+.||+|++-|++++....  .
T Consensus       203 va~GdK~G~VG~Wn~~~~~--------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s  274 (498)
T KOG4328|consen  203 VAVGDKGGQVGLWNFGTQE--------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS  274 (498)
T ss_pred             EEEccCCCcEEEEecCCCC--------CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh
Confidence            6888899999999996421        1233455567899999999999   5789999999999999999774433  3


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce-eeeeeeccccEEEEEEecCC-CEEEEEeCCCeEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL-LTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLA  155 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~  155 (343)
                      +... ...+..+.|+...     ..++.+..=|...+||.++... ...+..|...|.+++++|.. .+|++++.|++.+
T Consensus       275 ~~~d-~~~fs~~d~~~e~-----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k  348 (498)
T KOG4328|consen  275 LDTD-NIWFSSLDFSAES-----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK  348 (498)
T ss_pred             cCcc-ceeeeeccccCCC-----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence            3334 5677888888877     6777777777999999987554 67778899999999999965 6899999999999


Q ss_pred             EEEccCCce-----eEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEc----ccceeEEEecCCcc------eEEeee
Q 019326          156 MVNLVRGRR-----SFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQA----EDAKLLCELDGKKR------ILCAAP  219 (343)
Q Consensus       156 ~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~----~~~~~~~~~~~~~~------i~~~~~  219 (343)
                      |||++.-..     +....+...|.+..|+|.+-.+++. .|+.|+|||.    ....+...+.|+..      .....|
T Consensus       349 IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W  428 (498)
T KOG4328|consen  349 IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW  428 (498)
T ss_pred             eeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee
Confidence            999986432     4455667889999999988777777 9999999998    44555666665432      234456


Q ss_pred             cC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEE-EEEecCCCCCCCCCCeEEEEE-cCCCcEEEEecc
Q 019326          220 GE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI-VVLTKNDGGSTAENPYLVASA-SSDGVICVWDVR  292 (343)
Q Consensus       220 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~  292 (343)
                      .+ .+++++|-.-..|-+||-..++.+.++.......|.++ .|+|.+.         .+++| +..|.|+||--+
T Consensus       429 ~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~---------~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  429 DPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRD---------TLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             CCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccc---------ceeccCCccceEEEEecC
Confidence            64 57889999999999999998887888763444455554 6777765         35554 566888888654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.9e-24  Score=173.91  Aligned_cols=248  Identities=18%  Similarity=0.224  Sum_probs=190.9

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC--------CeeeeEeccCCCCCeEEEEEeCCCCCCCC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST--------SSSLGAIHHHESSSVTSLAFYTPQNLSVP  100 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~  100 (343)
                      +..+.+++..|...|+.++|.  ...|++++.||.|++|+++.        -+++.+|.+| .++|.|+++.+++     
T Consensus       283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~-----  356 (577)
T KOG0642|consen  283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNG-----  356 (577)
T ss_pred             ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCc-----
Confidence            355566888999999999998  78899999999999999932        2578899999 9999999999999     


Q ss_pred             ceEEEeeCCCeEEEEECCC----------cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-
Q 019326          101 RNLFSTSADGFVSIFDADP----------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-  169 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-  169 (343)
                      ..+++|+.||+|+.|++..          ......+.+|.+.|+.+++++....|++++.||+++.|+...... ..+. 
T Consensus       357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~  435 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE  435 (577)
T ss_pred             eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC
Confidence            8999999999999996531          134567789999999999999999999999999999999877665 1111 


Q ss_pred             --cCCcceEEEEeCCCCE-EEEE-eCCcEEEEEcccceeEEEecC--------CcceEEeeecC-CCeEEEEeCCCcEEE
Q 019326          170 --IGKEASLIKFDGSGEK-FFMV-TEEKVGIHQAEDAKLLCELDG--------KKRILCAAPGE-NGVLFTGGEDRSITA  236 (343)
Q Consensus       170 --~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~d~~~~~~~~~~~~--------~~~i~~~~~~~-~~~l~~~~~dg~i~i  236 (343)
                        -.+....+.+-..... .++. .-+.-.+++......+..+..        ...+.-+..++ ..+.+++..|+.|++
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~  515 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF  515 (577)
T ss_pred             ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence              1233344444332211 1111 233333444444444444431        12345555554 568899999999999


Q ss_pred             EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       237 ~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +|..+++++.... +|...++++++.+++.         +|++++.|+.+++|.+....
T Consensus       516 ~dn~~~~~l~s~~-a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  516 FDNKTGKILHSMV-AHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ccccccccchhee-eccceecceeecCCCc---------eEEeecCCceeehhhccchh
Confidence            9999999999999 9999999999999998         99999999999999997653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.6e-24  Score=190.21  Aligned_cols=235  Identities=21%  Similarity=0.251  Sum_probs=189.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe-
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI-   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~-   78 (343)
                      |+.|+.||.|-+||....      .+......+.++..|.++|..+.|+   ++.||+|+.||.|.|||+.+.+.-..+ 
T Consensus        83 IaGG~edG~I~ly~p~~~------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~  156 (1049)
T KOG0307|consen   83 IAGGLEDGNIVLYDPASI------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG  156 (1049)
T ss_pred             eeccccCCceEEecchhh------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence            778889999999998762      1233345567778899999999999   789999999999999999975544333 


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc--cEEEEEEecCC-CEEEEEeCCC---
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK--GVNDLAVHHSG-KLALTVGRDD---  152 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~-~~l~~~~~d~---  152 (343)
                      .....+.|.+++|+..-.    ..|++++.+|.+.|||++..+.+..+..+.+  .+..++|+|+. ..+++++.|.   
T Consensus       157 ~~~~~~eI~~lsWNrkvq----hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P  232 (1049)
T KOG0307|consen  157 SQAPPSEIKCLSWNRKVS----HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP  232 (1049)
T ss_pred             CCCCcccceEeccchhhh----HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence            111268899999997763    6899999999999999998888887776654  57889999986 5666666653   


Q ss_pred             eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeec--CCCeEEEEe
Q 019326          153 CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPG--ENGVLFTGG  229 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~--~~~~l~~~~  229 (343)
                      .|.+||+|.-.                                       ..++.+. |...|.++.|+  +..++++++
T Consensus       233 viqlWDlR~as---------------------------------------sP~k~~~~H~~GilslsWc~~D~~lllSsg  273 (1049)
T KOG0307|consen  233 VIQLWDLRFAS---------------------------------------SPLKILEGHQRGILSLSWCPQDPRLLLSSG  273 (1049)
T ss_pred             eeEeecccccC---------------------------------------CchhhhcccccceeeeccCCCCchhhhccc
Confidence            46777766432                                       3344443 77889999998  457999999


Q ss_pred             CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          230 EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       230 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      .|+.|.+|+.++++.+..+. .....+..+.|+|....        .++.++.||.|.|+.+....
T Consensus       274 kD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~--------~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  274 KDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPS--------VMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcc--------hhhhheeccceeeeeeecCC
Confidence            99999999999999999999 78899999999998764        79999999999999998764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-22  Score=164.58  Aligned_cols=245  Identities=17%  Similarity=0.159  Sum_probs=195.8

Q ss_pred             EEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            4 IAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         4 ~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      +.-+.|..|++|.-..        +..+...+....+.  .-.|++..  ..++++|+..+.|+|||++...+.+.++.|
T Consensus        51 as~~gdk~~~~~~K~g--------~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh  120 (673)
T KOG4378|consen   51 ASMAGDKVMRIKEKDG--------KTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDH  120 (673)
T ss_pred             eecCCceeEEEecccC--------CCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCC
Confidence            3445677888887654        22222233333332  34455444  689999999999999999977777888889


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCC-EEEEEeCCCeEEEEEc
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGK-LALTVGRDDCLAMVNL  159 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~-~l~~~~~d~~i~~wd~  159 (343)
                       ...|+++.++...     .+|++++..|.|.|..+.++.....|....+ .|.-+.|+|..+ +|.+++.+|.|.+||+
T Consensus       121 -~stvt~v~YN~~D-----eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  121 -QSTVTYVDYNNTD-----EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             -cceeEEEEecCCc-----ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence             8999999999888     8999999999999999999887777774433 566899999764 5667889999999999


Q ss_pred             cCCceeEEE--EcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcE
Q 019326          160 VRGRRSFYH--KIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSI  234 (343)
Q Consensus       160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i  234 (343)
                      ....+....  .+..+...++|+|....+++.  .|..|.+||.+..+....+....+...++|.+ +.+|++|...|.|
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceE
Confidence            877665543  345677789999988776665  89999999999998888888889999999994 6789999999999


Q ss_pred             EEEECCCC-ceeEEecccccccEEEEEEEecC
Q 019326          235 TAWDTNSG-KVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       235 ~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ..||++.. .++..+. +|...|++++|-+..
T Consensus       275 i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  275 IAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEecccCCCCceEee-ecccceeEEEeeecc
Confidence            99999865 4667777 999999999998874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.91  E-value=4.3e-23  Score=154.44  Aligned_cols=243  Identities=17%  Similarity=0.196  Sum_probs=185.0

Q ss_pred             EEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           33 TQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      .+.+.+++|.+.|+++.|. .++|++|..-|.|++|++++.+....+..++...|+.+...|++      .+.+-+.|+.
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d------~l~tqgRd~~   78 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND------SLDTQGRDPL   78 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc------chhhcCCCce
Confidence            4667888999999999999 88899999999999999999999888885558899999999876      7899999999


Q ss_pred             EEEEECCCccee-------------------------eeee----------------------------eccccEEEEEE
Q 019326          112 VSIFDADPFVLL-------------------------TSVK----------------------------VHKKGVNDLAV  138 (343)
Q Consensus       112 i~iwd~~~~~~~-------------------------~~~~----------------------------~~~~~v~~i~~  138 (343)
                      +.+|++.....+                         +.+.                            +..+.+.+..+
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            999997531100                         0000                            01134455543


Q ss_pred             ecC-C--CEEEEEeCCCeEEEEEccCCceeEE-----------EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccce
Q 019326          139 HHS-G--KLALTVGRDDCLAMVNLVRGRRSFY-----------HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK  203 (343)
Q Consensus       139 ~~~-~--~~l~~~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~  203 (343)
                      ..+ +  -++++|.++|.+.+||+.++..+..           ..+..++..+.+.+....=+.+ .+..+..|++....
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            322 2  3567788899999999999744332           2345678888887765554555 67778888876532


Q ss_pred             eE----EEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          204 LL----CELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       204 ~~----~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      ..    ..+. .+..+..+.+- +++.+++++.|+.||+|+.++..++..+. .|...|++++|+|+.+         ++
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~---------lm  308 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCE---------LM  308 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCc---------hh
Confidence            11    1111 23335555555 67899999999999999999999999999 9999999999999976         99


Q ss_pred             EEEcCCCcEEEEec
Q 019326          278 ASASSDGVICVWDV  291 (343)
Q Consensus       278 ~s~~~dg~i~vwd~  291 (343)
                      |++|.|++|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=3.3e-22  Score=166.68  Aligned_cols=263  Identities=14%  Similarity=0.094  Sum_probs=183.7

Q ss_pred             CCCCCeEE--EEec-----CceEEEeeCCCeEEEEEcCCCee------eeEeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           40 AHLSPITT--VAVS-----GTAAASGGTDDTIHLYDLSTSSS------LGAIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        40 ~h~~~v~~--l~~~-----~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      .|.-++.-  ..|+     ...|+.+..||.|.++|......      +..+..| ...|..+.|.|..     ..|+++
T Consensus        45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wapge-----~~lVsa  118 (720)
T KOG0321|consen   45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAPGE-----SLLVSA  118 (720)
T ss_pred             cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccc-cceeEeeccCCCc-----eeEEEc
Confidence            34444444  4555     46899999999999999876432      3455678 8999999999955     799999


Q ss_pred             eCCCeEEEEECCCcceeee--eeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeE-----------------
Q 019326          107 SADGFVSIFDADPFVLLTS--VKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSF-----------------  166 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~-----------------  166 (343)
                      +.|.++++||+++.+++..  +.+|.+.|.+++|.|.. ..|++|+.||.|.|||++....-.                 
T Consensus       119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            9999999999999888877  88999999999999965 688999999999999997543000                 


Q ss_pred             -----E------EEcCCcceE---EEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec---------C---CcceEEee
Q 019326          167 -----Y------HKIGKEASL---IKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD---------G---KKRILCAA  218 (343)
Q Consensus       167 -----~------~~~~~~~~~---~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~---------~---~~~i~~~~  218 (343)
                           .      ......+..   +.+..|...|+++  .|+.|++||++.........         +   ...+.++.
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~  278 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI  278 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE
Confidence                 0      000112233   5556677888888  59999999999765443322         2   23466676


Q ss_pred             ec-CCCeEEEEeCCCcEEEEECCCCc--eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          219 PG-ENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       219 ~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      .. .|.+|++.+.|+.|++|++.+-.  ++..+. ++..  ..+..-.     .+++++.++++|+.|...++|.+.+..
T Consensus       279 lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~--~sf~vks-----~lSpd~~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  279 LDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLN--SSFYVKS-----ELSPDDCSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             ecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-Cccc--ceeeeee-----ecCCCCceEeccCCCcceeeeeecCcc
Confidence            65 46788777789999999998643  344443 3221  1111110     124555599999999999999999864


Q ss_pred             ccCCCcccccccccceeEEEcCCC
Q 019326          296 KEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       296 ~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      ..   +..-..+.-.|++++|.|.
T Consensus       351 ~~---~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  351 AP---PALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CC---hhhhhCcceEEEEEeeccc
Confidence            22   2222233345777777553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.9e-21  Score=166.01  Aligned_cols=304  Identities=19%  Similarity=0.258  Sum_probs=222.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---C--ceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---G--TAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~--~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      .+.+..+..|.||...+            ..++..+.+|..+++.+.+.   .  .++++++.||.|++||...+.++..
T Consensus        30 ~l~~~~~~~V~VyS~~T------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt   97 (792)
T KOG1963|consen   30 FLFLCTGNFVKVYSTAT------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT   97 (792)
T ss_pred             EEEEeeCCEEEEEecch------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence            34566678999999988            45566888999999999997   2  5788999999999999761100000


Q ss_pred             --------------------------------------------------------------------------------
Q 019326           78 --------------------------------------------------------------------------------   77 (343)
Q Consensus        78 --------------------------------------------------------------------------------   77 (343)
                                                                                                      
T Consensus        98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen   98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI  177 (792)
T ss_pred             EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence                                                                                            


Q ss_pred             ----------------------eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC----cceeeeeeeccc
Q 019326           78 ----------------------IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP----FVLLTSVKVHKK  131 (343)
Q Consensus        78 ----------------------~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~  131 (343)
                                            ...||.-.+++.+++|++     +++++|..||.|.+|.--.    ......+.-|..
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-----~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-----RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-----ceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence                                  011224457889999998     8999999999999997422    234566778999


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG  210 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~  210 (343)
                      .|.+++|+++|.+|++|+.++.+.+|.+.++++.....++.++..+.++|++...+.. .|+.|.+....+......+.+
T Consensus       253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg  332 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG  332 (792)
T ss_pred             ccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence            9999999999999999999999999999999988888999999999999999999888 999999998866655544442


Q ss_pred             Cc------------ceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEec----------------------------
Q 019326          211 KK------------RILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIE----------------------------  249 (343)
Q Consensus       211 ~~------------~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------  249 (343)
                      -.            -.+.+++++ .+.++-.+..|.|.+||+.+.+.+..+.                            
T Consensus       333 i~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~  412 (792)
T KOG1963|consen  333 IKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW  412 (792)
T ss_pred             ccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE
Confidence            21            233445544 4566667777788888776533222221                            


Q ss_pred             ---------------------------------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          250 ---------------------------------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       250 ---------------------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                                                             .+|...+...++.+....       ..+++++.||.++||-
T Consensus       413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-------~~~vta~~dg~~KiW~  485 (792)
T KOG1963|consen  413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-------VRCVTASVDGDFKIWV  485 (792)
T ss_pred             EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-------ceeEEeccCCeEEEEE
Confidence                                                   345555555555444332       2799999999999999


Q ss_pred             ccCccccCCC------cccccccccceeEEEcCCCCceeccccCCC
Q 019326          291 VRMAIKEKPL------PLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       291 ~~~~~~~~~~------~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      +...+...+.      ......+..++++++|+.||.+++.+.++-
T Consensus       486 ~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~  531 (792)
T KOG1963|consen  486 FTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT  531 (792)
T ss_pred             EecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE
Confidence            9544221111      111112567899999999999998887765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.8e-21  Score=147.12  Aligned_cols=226  Identities=18%  Similarity=0.194  Sum_probs=169.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCC------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLST------   71 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~------   71 (343)
                      |+++++.|+.|+|||...        ...+.......+.|.+.|..+.|.    |+.+|+++.|+++.||.-..      
T Consensus        27 RmAtCSsDq~vkI~d~~~--------~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~   98 (361)
T KOG2445|consen   27 RMATCSSDQTVKIWDSTS--------DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH   98 (361)
T ss_pred             eeeeccCCCcEEEEeccC--------CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence            789999999999999754        233456667778999999999997    89999999999999997631      


Q ss_pred             ---CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC------Ccceeeeee-------eccccEEE
Q 019326           72 ---SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD------PFVLLTSVK-------VHKKGVND  135 (343)
Q Consensus        72 ---~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~-------~~~~~v~~  135 (343)
                         ......+... ...|+.+.|.|...   +-.+++++.||+++||+..      ...+..+++       .+..+..|
T Consensus        99 ~~~Wv~~ttl~Ds-rssV~DV~FaP~hl---GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C  174 (361)
T KOG2445|consen   99 GRRWVRRTTLVDS-RSSVTDVKFAPKHL---GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC  174 (361)
T ss_pred             cceeEEEEEeecC-CcceeEEEecchhc---ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence               1233455556 78999999999752   3689999999999999863      333444444       35567889


Q ss_pred             EEEecCC---CEEEEEeCC-----CeEEEEEccCCce--eE---EEEcCCcceEEEEeCCC----CEEEEE-eCCcEEEE
Q 019326          136 LAVHHSG---KLALTVGRD-----DCLAMVNLVRGRR--SF---YHKIGKEASLIKFDGSG----EKFFMV-TEEKVGIH  197 (343)
Q Consensus       136 i~~~~~~---~~l~~~~~d-----~~i~~wd~~~~~~--~~---~~~~~~~~~~~~~~~~~----~~~~~~-~~~~i~~~  197 (343)
                      +.|+|..   .+|++|+.+     +.++||....+..  ..   ...+..+|..++|.|+-    ..++++ .|| |+||
T Consensus       175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~  253 (361)
T KOG2445|consen  175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF  253 (361)
T ss_pred             EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence            9999753   567777765     4788888765431  11   22456889999999953    356666 666 9999


Q ss_pred             Ecccc--------------------eeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECC
Q 019326          198 QAEDA--------------------KLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       198 d~~~~--------------------~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~  240 (343)
                      .+...                    +.+..+. |++++..+.|. .+..|.+.+.||+|++|...
T Consensus       254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            98731                    1222233 78899999998 67899999999999999764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.1e-21  Score=162.58  Aligned_cols=256  Identities=14%  Similarity=0.131  Sum_probs=195.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--C--ceEEEeeCCCeEEEEEcCCC------
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--G--TAAASGGTDDTIHLYDLSTS------   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~~~dg~i~iwd~~~~------   72 (343)
                      |++|+.||+|+||.+.+            ..++.++. -.+.|.|++|+  +  ..||++- ...+.+-+..-|      
T Consensus       415 lasGsdDGtvriWEi~T------------gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~  480 (733)
T KOG0650|consen  415 LASGSDDGTVRIWEIAT------------GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVG  480 (733)
T ss_pred             eeecCCCCcEEEEEeec------------ceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhc
Confidence            78999999999999998            45555543 35689999998  2  2344333 333444432211      


Q ss_pred             -------------------------------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECC
Q 019326           73 -------------------------------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDAD  118 (343)
Q Consensus        73 -------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~  118 (343)
                                                     +-++..-.| ...|..+.|+..|     .+|++...+   ..|.|.++.
T Consensus       481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkG-----DYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKG-----DYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCC-----ceEEEeccCCCcceEEEEecc
Confidence                                           011222345 6889999999999     899988774   478999998


Q ss_pred             CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEE
Q 019326          119 PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGI  196 (343)
Q Consensus       119 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~  196 (343)
                      ..+....|+-..+.|.++.|+|...+|++++. ..|++||+..+..+... .....+..++.+|.|..++++ .++.+..
T Consensus       555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W  633 (733)
T KOG0650|consen  555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW  633 (733)
T ss_pred             cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence            77766777667788999999999988888775 57999999876654433 334678899999999999999 9999999


Q ss_pred             EEcccc-eeEEEec-CCcceEEeeecCC-CeEEEEeCCCcEEEEECC------CC---ceeEEeccccccc----EEEEE
Q 019326          197 HQAEDA-KLLCELD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDTN------SG---KVAYCIEDAHSAR----VKGIV  260 (343)
Q Consensus       197 ~d~~~~-~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~------~~---~~~~~~~~~h~~~----v~~~~  260 (343)
                      ||+.-+ ++.+++. |...+++++++.. .++++|+.||++.||.-.      ..   -++..+. +|...    |....
T Consensus       634 fDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~  712 (733)
T KOG0650|consen  634 FDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTI  712 (733)
T ss_pred             EEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEeec
Confidence            999854 5666666 7788999999854 689999999999998532      11   2566777 88766    89999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      |+|...         +|++++.||+|++|
T Consensus       713 wHP~qp---------WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  713 WHPRQP---------WLFSAGADGTIRLF  732 (733)
T ss_pred             ccCCCc---------eEEecCCCceEEee
Confidence            999998         99999999999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=3.8e-21  Score=146.07  Aligned_cols=267  Identities=18%  Similarity=0.236  Sum_probs=191.7

Q ss_pred             eeEEecc----CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-------CceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSY----EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-------GTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~   70 (343)
                      +|+.|+.    .+.|.|..+...        ..+.....++ .|.-+++.+-|.       .++|||.+  ..+|+|.+.
T Consensus        61 rla~gS~~Ee~~Nkvqiv~ld~~--------s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~  129 (364)
T KOG0290|consen   61 RLAVGSFIEEYNNKVQIVQLDED--------SGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIG  129 (364)
T ss_pred             eEEEeeeccccCCeeEEEEEccC--------CCceeccCCC-CCCCCccceEecCCccccCcchhhccc--CeEEEEecc
Confidence            5677763    567777776531        1222222232 589999999997       34566655  469999987


Q ss_pred             CCee----eeEe----ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc---eeeeeeeccccEEEEEEe
Q 019326           71 TSSS----LGAI----HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV---LLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        71 ~~~~----~~~~----~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~  139 (343)
                      ..+.    ...+    ..+...++++..|+.-.    ++++.+.+-|-+..|||++++.   ...++-.|...|..|+|.
T Consensus       130 ~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d----p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~  205 (364)
T KOG0290|consen  130 DEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD----PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL  205 (364)
T ss_pred             CcCCceehhhhhccCcccccCCcccccccccCC----cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec
Confidence            4211    1111    12226789999998776    6899999999999999998763   366777899999999999


Q ss_pred             cCC-CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEee
Q 019326          140 HSG-KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAA  218 (343)
Q Consensus       140 ~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~  218 (343)
                      ..+ +.+++++.||.+++||++..+....                            +|.-..        ...+...++
T Consensus       206 ~~s~~~FASvgaDGSvRmFDLR~leHSTI----------------------------IYE~p~--------~~~pLlRLs  249 (364)
T KOG0290|consen  206 KGSRDVFASVGADGSVRMFDLRSLEHSTI----------------------------IYEDPS--------PSTPLLRLS  249 (364)
T ss_pred             cCccceEEEecCCCcEEEEEecccccceE----------------------------EecCCC--------CCCcceeec
Confidence            865 6899999999999999987653211                            111000        134566667


Q ss_pred             ec--CCCeEEEEeC-CCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          219 PG--ENGVLFTGGE-DRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       219 ~~--~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |+  +.+++++-.. ...|.|.|++.. .++.++. +|.+.|++++|.|....        .|+|++.|..+.+||+...
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~--------hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSS--------HICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCc--------eeeecCCcceEEEEecccc
Confidence            76  3467776554 456999999865 5778888 99999999999998764        8999999999999999876


Q ss_pred             cc-cCCCcccccccccceeEEEcCCC-CceeccccC
Q 019326          295 IK-EKPLPLAEAKTNSRLTCLAGSST-KSFKRPQIG  328 (343)
Q Consensus       295 ~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~~~~~~~  328 (343)
                      .. ...-|+..+...+.|+.+.|++. ...++...+
T Consensus       321 ~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  321 PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             cccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            54 34446666777888999999954 445544443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=4.1e-21  Score=151.61  Aligned_cols=201  Identities=19%  Similarity=0.294  Sum_probs=165.3

Q ss_pred             ecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           38 YPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        38 ~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      +.||+++|..++|+   .+.+|+|+.|.+|.||.+..+       +.+..+.+| ...|..++|+|..    .+.|++++
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~wHPtA----~NVLlsag  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQWHPTA----PNVLLSAG  151 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEeecccc----hhhHhhcc
Confidence            45899999999998   788999999999999998754       456778899 9999999999987    48999999


Q ss_pred             CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEeCCCCE
Q 019326          108 ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFDGSGEK  185 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~  185 (343)
                      .|.+|.+||+.+++.+.++. |...|.++.|+.+|.+|++.+.|..|++||.++++.+.....  +.....+.|-.++..
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI  230 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence            99999999999999988888 999999999999999999999999999999999998776522  244566778888886


Q ss_pred             EEEE----eCCcEEEEEcccce---eEEEecCCcceEEeeecCC-Ce-EEEEeCCCcEEEEECCCCce
Q 019326          186 FFMV----TEEKVGIHQAEDAK---LLCELDGKKRILCAAPGEN-GV-LFTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       186 ~~~~----~~~~i~~~d~~~~~---~~~~~~~~~~i~~~~~~~~-~~-l~~~~~dg~i~i~d~~~~~~  244 (343)
                      +.++    ++.++.+||..+-+   ....+.....|.-=.+.++ +. .++|-.|+.|+.|.+.+..+
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            6666    57889999877644   3445555555555555533 44 45667799999999886553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=2.3e-21  Score=161.94  Aligned_cols=119  Identities=16%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             CCcceEEeeec--CCCeEEEEeCCCcEEEEECCCC-------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          210 GKKRILCAAPG--ENGVLFTGGEDRSITAWDTNSG-------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       210 ~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ....|+.+.|.  +...|+++++||.|++|.+..+       ++...+. +|...|+++.|+|-..+        .|+++
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAad--------vLa~a  696 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAAD--------VLAVA  696 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhh--------Hhhhh
Confidence            34567888887  5679999999999999998653       3556677 99999999999998654        89999


Q ss_pred             cCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccCcc
Q 019326          281 SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASME  341 (343)
Q Consensus       281 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  341 (343)
                      +.|-+|++||+.+.+..    ..-..+.+.|..++|||+|+.++....|+++++.+..+.|
T Consensus       697 syd~Ti~lWDl~~~~~~----~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  697 SYDSTIELWDLANAKLY----SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hccceeeeeehhhhhhh----heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            99999999999987422    2223556679999999999999999999999888776655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=2.4e-20  Score=143.79  Aligned_cols=281  Identities=17%  Similarity=0.213  Sum_probs=199.8

Q ss_pred             eEEEEec--CceEEEeeCCCeEEEEEcCCC------------eeeeEeccCCCCCeEEEEEeCCCCC--CCCceEEEeeC
Q 019326           45 ITTVAVS--GTAAASGGTDDTIHLYDLSTS------------SSLGAIHHHESSSVTSLAFYTPQNL--SVPRNLFSTSA  108 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~l~s~~~  108 (343)
                      ...+.|+  |..|++-+.|..+++|++...            +....++-.+...|...+|-+.-++  ....++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4466788  889999999999999998531            1111222222466777787743322  12268999999


Q ss_pred             CCeEEEEECCCcceeeeeee--ccc---cEEEEEEecCCCEEEEEeCCCeEEEEEc-cCCceeE--------EEEcCCcc
Q 019326          109 DGFVSIFDADPFVLLTSVKV--HKK---GVNDLAVHHSGKLALTVGRDDCLAMVNL-VRGRRSF--------YHKIGKEA  174 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~--------~~~~~~~~  174 (343)
                      +.-|++||.-+++....+++  |..   ...+++|+|||..|++|. ...|+++|+ +.|+.-.        .+...+-+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999998888764  322   456899999999988764 578999999 6665221        11224567


Q ss_pred             eEEEEeCCCC-EEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeC-CCcEEEEECCCC-ceeEEe
Q 019326          175 SLIKFDGSGE-KFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGE-DRSITAWDTNSG-KVAYCI  248 (343)
Q Consensus       175 ~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~  248 (343)
                      .+++|+|... .++++ ....+-||.-..+.++..+. |.+.|+.++|. +++.|++|+. |-.|..||++.. .++..+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence            8899999766 66666 77888899888888888776 88999999999 6788888876 778999999864 567777


Q ss_pred             cccccc-cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc
Q 019326          249 EDAHSA-RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       249 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      . .|.. .-..|.|.-+..       +++|++|+.||.|++||++....  + +.........++.+++.|--.+++...
T Consensus       291 ~-rhv~~TNQRI~FDld~~-------~~~LasG~tdG~V~vwdlk~~gn--~-~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  291 E-RHVGDTNQRILFDLDPK-------GEILASGDTDGSVRVWDLKDLGN--E-VSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             h-hhccCccceEEEecCCC-------CceeeccCCCccEEEEecCCCCC--c-ccccccccccccceecCcccceeeecc
Confidence            7 6665 444555544333       33999999999999999998422  1 111223344577778877766666666


Q ss_pred             CCCCCCCccc
Q 019326          328 GDSAPKGEEK  337 (343)
Q Consensus       328 ~~~~~~~~~~  337 (343)
                      +....+.+++
T Consensus       360 Gqr~f~~~~d  369 (406)
T KOG2919|consen  360 GQRIFKYPKD  369 (406)
T ss_pred             CceeecCCCc
Confidence            6655544444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.4e-20  Score=151.26  Aligned_cols=248  Identities=16%  Similarity=0.165  Sum_probs=191.8

Q ss_pred             eEEeEEecCCCCCeEEEEec---C-ceEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           32 LTQLFSYPAHLSPITTVAVS---G-TAAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~---~-~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      ..+....+-|..+|++++|+   . +++|+|...|+|-+||+.+.    .-+..+..| ..+|.+|.|+|..    ...+
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n----~s~i  250 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPAN----TSQI  250 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCC----hhhe
Confidence            34455566789999999999   3 78999999999999999633    234566778 9999999999998    4799


Q ss_pred             EEeeCCCeEEEEECCCcce--eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-EE-EEcCCcceEEEE
Q 019326          104 FSTSADGFVSIFDADPFVL--LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-FY-HKIGKEASLIKF  179 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~-~~~~~~~~~~~~  179 (343)
                      ++.+.||+|++-|+++...  +..+........++.|+.+...++.+..=|...+||++++... .. .-+...|..+++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            9999999999999987543  3333334557788888888888888888889999999987652 22 223468999999


Q ss_pred             eCCCCE-EEEE-eCCcEEEEEcccce-----eEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEEC----CCCceeEE
Q 019326          180 DGSGEK-FFMV-TEEKVGIHQAEDAK-----LLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDT----NSGKVAYC  247 (343)
Q Consensus       180 ~~~~~~-~~~~-~~~~i~~~d~~~~~-----~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~----~~~~~~~~  247 (343)
                      +|...+ ++++ .|++.+|||++.-.     .+..+.|...|.+..|++ +..|++.+.|..|+|||.    ....+...
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            997665 5555 89999999998633     255667999999999994 456999999999999998    44455555


Q ss_pred             ecccccc------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          248 IEDAHSA------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       248 ~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +.  |..      .....+|.|+..         +++.|-.-..|-|+|-..++
T Consensus       411 I~--Hn~~t~RwlT~fKA~W~P~~~---------li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  411 IP--HNNRTGRWLTPFKAAWDPDYN---------LIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             ee--ccCcccccccchhheeCCCcc---------EEEEeccCcceeEEcCCCCE
Confidence            55  332      223445777665         99999999999999998764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.4e-20  Score=143.52  Aligned_cols=223  Identities=19%  Similarity=0.178  Sum_probs=172.2

Q ss_pred             EeccCCeEEEEEeecCCCCCCCCcceeeEEeE---EecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            5 AGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLF---SYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         5 ~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      +.-....+++|.+...+..   +-.+...+..   --+.|.-.|..+-..  +.++++++.|..|.+|+++ |+.+..+.
T Consensus       150 ~~~~g~~l~vyk~~K~~dG---~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id  225 (420)
T KOG2096|consen  150 SVKRGNKLCVYKLVKKTDG---SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID  225 (420)
T ss_pred             EEccCCEEEEEEeeecccC---CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec
Confidence            3345568999988763321   1122222222   223466666666555  7899999999999999999 99999988


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC---CCc-----ceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA---DPF-----VLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      .. ...-+..+.+|+|     +++++++..--|++|.+   +.|     ..+.++++|...|..++|+++...+++.+.|
T Consensus       226 tn-q~~n~~aavSP~G-----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  226 TN-QSSNYDAAVSPDG-----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             cc-cccccceeeCCCC-----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence            87 7778889999999     89999999999999987   222     3456788999999999999999999999999


Q ss_pred             CeEEEEEccCC----ce--------eEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec--CCcceEEe
Q 019326          152 DCLAMVNLVRG----RR--------SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD--GKKRILCA  217 (343)
Q Consensus       152 ~~i~~wd~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~i~~~  217 (343)
                      |++++||+.-.    +-        ............+.++|+++.|+.+....+.+|..++++....++  |...|.++
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~i  379 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSI  379 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeE
Confidence            99999997532    11        111122344567999999999999999999999999998888777  88999999


Q ss_pred             eecC-CCeEEEEeCCCcEEEEE
Q 019326          218 APGE-NGVLFTGGEDRSITAWD  238 (343)
Q Consensus       218 ~~~~-~~~l~~~~~dg~i~i~d  238 (343)
                      +|++ ++++++++ |..++++.
T Consensus       380 s~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  380 SYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EecCCCcEEeeec-ceeeeeec
Confidence            9994 66777665 67888875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=158.49  Aligned_cols=257  Identities=13%  Similarity=0.157  Sum_probs=194.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      |+.+. +..+.+||...            ...+.++++|++.|.|++|+  |..+|+|+.|..|.+|+.+-   ...++-
T Consensus        27 L~lAA-g~rlliyD~nd------------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkY   90 (1081)
T KOG1538|consen   27 LILAA-GSRLLVYDTSD------------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKY   90 (1081)
T ss_pred             EEEec-CCEEEEEeCCC------------cccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeee
Confidence            34433 45789999987            56778899999999999999  99999999999999998543   333333


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      .|...|.|+.|+|-.     ..|++++.. ..-+|..+.. .+...+ ....+.+.+|..||.+++.|-.+|+|.+-+-.
T Consensus        91 SH~D~IQCMsFNP~~-----h~LasCsLs-dFglWS~~qK-~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPIT-----HQLASCSLS-DFGLWSPEQK-SVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             ccCCeeeEeecCchH-----HHhhhcchh-hccccChhhh-hHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            238999999999998     678887764 4678887653 233322 34578899999999999999999999998765


Q ss_pred             CCceeEEEE---cCCcceEEEEeCCC-----CEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeC
Q 019326          161 RGRRSFYHK---IGKEASLIKFDGSG-----EKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGE  230 (343)
Q Consensus       161 ~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~  230 (343)
                      ..+......   ...++..++|+|..     ..+++. ...++..|.+.....-+.-...-...|+.+. ++.+++.|+.
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs  242 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGS  242 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccC
Confidence            444444444   34678999999853     345555 5666666666543333233334445566655 6889999999


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |+.+.+|.. .|-.+.++- .....|+.++..|+++         .++.|+.||+|--|++-..
T Consensus       243 dk~L~~fTR-~GvrLGTvg-~~D~WIWtV~~~PNsQ---------~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  243 DKQLSLFTR-DGVRLGTVG-EQDSWIWTVQAKPNSQ---------YVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             CCceEEEee-cCeEEeecc-ccceeEEEEEEccCCc---------eEEEEEccCeeehhhhHHh
Confidence            999999964 477788877 5788999999999988         9999999999999988543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.88  E-value=2.2e-22  Score=172.64  Aligned_cols=269  Identities=16%  Similarity=0.220  Sum_probs=203.6

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      -+..+.||..+|.|..|+  |.++++|+.|..++||..+++.++....+| .+.|+.++.+.+.     .++++++.|..
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n-----~~iaaaS~D~v  255 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNN-----TMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhh-----hhhhhcccCce
Confidence            345677999999999999  999999999999999999999999999999 9999999999887     78999999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE-----EEEcCCcceEEEEeCCCCEE
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF-----YHKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (343)
                      |++|.+..+.++..+++|++.|++|+|+|-.    +.+.||++++||.+-.....     .......+..+.+..++..+
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999999964    77889999999998211111     11122445566677777777


Q ss_pred             EEE-eCCcEEEEEcccceeEEEecCCcceEEeeec--CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          187 FMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG--ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      +++ .++.-..|....-..     +...+.-+..+  -+.+.+++-.+-.+.+|++.+|.....+. +|...+..|.++|
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHP  405 (1113)
T ss_pred             ccccCCcccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecC
Confidence            777 677666665432110     11111111111  12456666677889999999999888888 9999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      .+.        ....+++.||...|||+-.+...+   ..... ...+..-+||++|..++....-+
T Consensus       406 fn~--------ri~msag~dgst~iwdi~eg~pik---~y~~g-h~kl~d~kFSqdgts~~lsd~hg  460 (1113)
T KOG0644|consen  406 FNP--------RIAMSAGYDGSTIIWDIWEGIPIK---HYFIG-HGKLVDGKFSQDGTSIALSDDHG  460 (1113)
T ss_pred             CCc--------HhhhhccCCCceEeeecccCCcce---eeecc-cceeeccccCCCCceEecCCCCC
Confidence            876        256689999999999999875333   22222 34465666777766555444433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=1.5e-20  Score=142.77  Aligned_cols=254  Identities=17%  Similarity=0.194  Sum_probs=187.6

Q ss_pred             CCCeEEEEEcCCC--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-------CeEEEEECCC---------cc
Q 019326           60 TDDTIHLYDLSTS--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-------GFVSIFDADP---------FV  121 (343)
Q Consensus        60 ~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~---------~~  121 (343)
                      .|+.|.+.+++..  +.......|+.+.|..|+-+|..    ++.|+++..+       -.+.||.+..         .+
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d----~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE  113 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFD----QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE  113 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCC----CceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence            3677887776643  33333333448999999999988    3566666552       2478998843         23


Q ss_pred             eeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-EEEE------cCCcceEEEEeC--CCCEEEEEeC
Q 019326          122 LLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-FYHK------IGKEASLIKFDG--SGEKFFMVTE  191 (343)
Q Consensus       122 ~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~------~~~~~~~~~~~~--~~~~~~~~~~  191 (343)
                      ++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+..+ ....      +......-+|+|  +++.+++..+
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d  192 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD  192 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence            444444 3556899999999998888766 789999999887752 2222      224455677888  7889999999


Q ss_pred             CcEEEEEcccceeEEEec--CCcceEEeeecCC--CeEEEEeCCCcEEEEECCCC-ceeEEecccccccEEEEEEEecCC
Q 019326          192 EKVGIHQAEDAKLLCELD--GKKRILCAAPGEN--GVLFTGGEDRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~--~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +++..||+++.+....+.  |...+..+.|.++  .+|++|++||.|++||.+.. .++.++. +|...|+++.|+|..+
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hd  271 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHD  271 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccc
Confidence            999999999988888776  7788999999865  48999999999999999865 5788888 9999999999999876


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccCcc---------------------ccCCCc---ccc-cccccceeEEEcCCCCc
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRMAI---------------------KEKPLP---LAE-AKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------------------~~~~~~---~~~-~~~~~~i~~~~~s~~~~  321 (343)
                              ++++++|.|..|.+|...+-.                     +.++.+   +.. -.+...|.+++||+-..
T Consensus       272 --------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  272 --------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             --------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence                    389999999999999775431                     111111   111 13445799999998777


Q ss_pred             eecccc
Q 019326          322 FKRPQI  327 (343)
Q Consensus       322 ~~~~~~  327 (343)
                      ++.+..
T Consensus       344 WiFASL  349 (370)
T KOG1007|consen  344 WIFASL  349 (370)
T ss_pred             eeEEEe
Confidence            665443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.1e-20  Score=145.67  Aligned_cols=243  Identities=17%  Similarity=0.231  Sum_probs=182.3

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC------CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST------SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      ..+.+|.+.|+++.|+  +.+|++|+.|..+++|+++.      .+++.....||...|.||+|....     .++++|.
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-----~~~~SG~  124 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-----RFLYSGE  124 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-----eeEecCC
Confidence            3456899999999999  89999999999999999863      466666666657999999999887     8999999


Q ss_pred             CCCeEEEEECCCcceeeeeee--ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc----eeEEEEcCCcceEEEEeC
Q 019326          108 ADGFVSIFDADPFVLLTSVKV--HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR----RSFYHKIGKEASLIKFDG  181 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~  181 (343)
                      .+++|..-|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+..+    .......+.....+.|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            999999999999887777652  23489999999999999999999999999998755    222222234445555666


Q ss_pred             CCCEEEEE--eCCcEEEEEccc-------------------------------------------------ce-eEEEec
Q 019326          182 SGEKFFMV--TEEKVGIHQAED-------------------------------------------------AK-LLCELD  209 (343)
Q Consensus       182 ~~~~~~~~--~~~~i~~~d~~~-------------------------------------------------~~-~~~~~~  209 (343)
                      ....++..  ..+.+-+||.+.                                                 .+ .+.++.
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            54443333  445555555432                                                 11 122222


Q ss_pred             CC-------cceEEeeecCCCeEEEEeCCCcEEEEECCCC-----------------------ceeEEecccccccEEEE
Q 019326          210 GK-------KRILCAAPGENGVLFTGGEDRSITAWDTNSG-----------------------KVAYCIEDAHSARVKGI  259 (343)
Q Consensus       210 ~~-------~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------~~~~~~~~~h~~~v~~~  259 (343)
                      |.       ..+.+++|.++.-+++|+.+-.|++|.+...                       +.+..+. +|...++.+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-GHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-GHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe-cccccccce
Confidence            22       2355677767777999999999999987531                       1334566 999999999


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      .|++...         +|++.+-.+.+++|.-..
T Consensus       364 RF~~H~~---------~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  364 RFSQHNN---------LLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             eecCCcc---------eEeccchhhheecccccc
Confidence            9999987         899999999999996543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=5.7e-20  Score=141.74  Aligned_cols=272  Identities=15%  Similarity=0.152  Sum_probs=195.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcce--eeEEeEEecCCCCCeEEEEec---------CceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTL--TLTQLFSYPAHLSPITTVAVS---------GTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~---------~~~l~s~~~dg~i~iwd~~   70 (343)
                      .|++-+.|+.+.+|++...........+.  +..+...+. ....|...+|.         .+++++.+.+.-|++||.-
T Consensus        63 ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf  141 (406)
T KOG2919|consen   63 CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF  141 (406)
T ss_pred             eEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeeccccCceeeeecc
Confidence            36788899999999997533221101111  222222222 23456666663         4789999999999999999


Q ss_pred             CCeeeeEeccCC----CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC-CCcceeee--e-----eeccccEEEEEE
Q 019326           71 TSSSLGAIHHHE----SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA-DPFVLLTS--V-----KVHKKGVNDLAV  138 (343)
Q Consensus        71 ~~~~~~~~~~~~----~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~--~-----~~~~~~v~~i~~  138 (343)
                      +|+....+....    -..-.+|+|+|++     .+|++| ....|+++|+ ++++....  .     .+..+.+.+++|
T Consensus       142 tG~lraSy~~ydh~de~taAhsL~Fs~DG-----eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~  215 (406)
T KOG2919|consen  142 TGKLRASYRAYDHQDEYTAAHSLQFSPDG-----EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAF  215 (406)
T ss_pred             ccccccchhhhhhHHhhhhheeEEecCCC-----CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeec
Confidence            999888775421    2345689999999     677665 5679999999 55542211  1     123678999999


Q ss_pred             ecCC-CEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccce-eEEEec-CCc
Q 019326          139 HHSG-KLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK-LLCELD-GKK  212 (343)
Q Consensus       139 ~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~-~~~~~~-~~~  212 (343)
                      +|-. +.+++++....+-+|.-..+.++... .+.+.|+.++|.++|+.|+++  .+..|..||++..+ ++..+. |..
T Consensus       216 sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~  295 (406)
T KOG2919|consen  216 SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG  295 (406)
T ss_pred             cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence            9965 58999999888888887776665543 456889999999999999999  78999999998744 444444 222


Q ss_pred             -ceEEeeec---CCCeEEEEeCCCcEEEEECCC-CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          213 -RILCAAPG---ENGVLFTGGEDRSITAWDTNS-GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       213 -~i~~~~~~---~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                       .-..+.|.   .++.|++|+.||.|++||++. +..+..+. .|...++.++++|.-+         ++++++..   +
T Consensus       296 ~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mp---------ilatssGq---r  362 (406)
T KOG2919|consen  296 DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMP---------ILATSSGQ---R  362 (406)
T ss_pred             CccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCcccc---------eeeeccCc---e
Confidence             22234443   578999999999999999998 67677777 8999999999999987         88888765   4


Q ss_pred             EEeccC
Q 019326          288 VWDVRM  293 (343)
Q Consensus       288 vwd~~~  293 (343)
                      +|...+
T Consensus       363 ~f~~~~  368 (406)
T KOG2919|consen  363 IFKYPK  368 (406)
T ss_pred             eecCCC
Confidence            454433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=4.2e-21  Score=158.08  Aligned_cols=240  Identities=18%  Similarity=0.233  Sum_probs=182.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-------   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-------   72 (343)
                      .|++++.||.|.+|+++..    ........+++.+|++|.++|.|+++.  +..+++|+.||+|+.|++...       
T Consensus       308 ~lit~sed~~lk~WnLqk~----~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~  383 (577)
T KOG0642|consen  308 VLITASEDGTLKLWNLQKA----KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSY  383 (577)
T ss_pred             eEEEeccccchhhhhhccc----CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccccc
Confidence            3789999999999999441    125566789999999999999999998  899999999999999966421       


Q ss_pred             ---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee--ccccEEEEEEecCC-CEEE
Q 019326           73 ---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV--HKKGVNDLAVHHSG-KLAL  146 (343)
Q Consensus        73 ---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~-~~l~  146 (343)
                         .....+.+| ...|+.+++++..     ..|++++.||+++.|+.....+ .++..  ..+...++++-... .+.+
T Consensus       384 dp~vl~~~l~Gh-tdavw~l~~s~~~-----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  384 DPSVLSGTLLGH-TDAVWLLALSSTK-----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             Ccchhccceecc-ccceeeeeecccc-----cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhh
Confidence               234467788 9999999999988     7899999999999999866554 33322  22334555554432 2333


Q ss_pred             EEeCCCeEEEEEccCCceeEEEEc--------CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEE
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYHKI--------GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILC  216 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~  216 (343)
                      +...-+.-.+++............        ...+..+..+|...+.+++ .++.|+++|..+++++.... |...+++
T Consensus       457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts  536 (577)
T KOG0642|consen  457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS  536 (577)
T ss_pred             hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence            333334444455555544433332        1346678889999999999 99999999999999988766 8899999


Q ss_pred             eeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccc
Q 019326          217 AAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS  253 (343)
Q Consensus       217 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~  253 (343)
                      +++.+ +.+|++++.|+.+++|.+....++.... +|.
T Consensus       537 lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~-~~r  573 (577)
T KOG0642|consen  537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST-AHR  573 (577)
T ss_pred             eeecCCCceEEeecCCceeehhhccchheeeccc-ccc
Confidence            99984 5699999999999999998777776665 554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=9.7e-18  Score=145.93  Aligned_cols=283  Identities=25%  Similarity=0.364  Sum_probs=211.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC-CCeEEEEe-c--Cc-eEEEeeC-CCeEEEEEcCC-Ceee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL-SPITTVAV-S--GT-AAASGGT-DDTIHLYDLST-SSSL   75 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~--~~-~l~s~~~-dg~i~iwd~~~-~~~~   75 (343)
                      ++.++.|+.+.+|+....       .    .....+.++. ..+..+.+ .  +. .++..+. |+.+++|+... ....
T Consensus        80 ~~~~~~d~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  148 (466)
T COG2319          80 LLSGSSDGTIKLWDLDNG-------E----KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI  148 (466)
T ss_pred             EEEecCCCcEEEEEcCCC-------c----eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence            556778999999998861       1    2344444433 36676666 4  44 4555444 99999999998 7888


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCCe
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDDC  153 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~  153 (343)
                      ..+..| ...|..+.|+|++     ..+++++. |+.+++|+......+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus       149 ~~~~~~-~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~  222 (466)
T COG2319         149 RTLEGH-SESVTSLAFSPDG-----KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT  222 (466)
T ss_pred             EEEecC-cccEEEEEECCCC-----CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence            888888 8999999999999     68888885 99999999998888999999999999999999987 5555599999


Q ss_pred             EEEEEccCCceeE-EEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEEEccccee-EEEe-cCCcceEEeeecC-CCeEEE
Q 019326          154 LAMVNLVRGRRSF-YHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL-LCEL-DGKKRILCAAPGE-NGVLFT  227 (343)
Q Consensus       154 i~~wd~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~-~~~~-~~~~~i~~~~~~~-~~~l~~  227 (343)
                      +++||...+.... .... .... ...|+|++..++++ .++.+++|+...... ...+ .|...+.++.+.+ +..+++
T Consensus       223 i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         223 IRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            9999988666655 2222 2332 33899999787777 999999999987664 4443 4678899999986 667777


Q ss_pred             EeCCCcEEEEECCCCceeEEec-ccccccEEEEEEEecC-CCCCCCCCCeEEEEE-cCCCcEEEEeccCccccCCCcccc
Q 019326          228 GGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKN-DGGSTAENPYLVASA-SSDGVICVWDVRMAIKEKPLPLAE  304 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~  304 (343)
                      ++.|+.+.+||..+........ ..|...+..+.+ ... .         .++.+ ..|+.+.+|++....     ....
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~d~~~~~~~~~~~~-----~~~~  366 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGS---------LLVSGGSDDGTIRLWDLRTGK-----PLKT  366 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCC---------EEEEeecCCCcEEeeecCCCc-----eeEE
Confidence            8888899999998776555443 367778999998 532 2         45555 788999999999764     1112


Q ss_pred             cccccceeEEEcCC
Q 019326          305 AKTNSRLTCLAGSS  318 (343)
Q Consensus       305 ~~~~~~i~~~~~s~  318 (343)
                      ......+..+.+++
T Consensus       367 ~~~~~~~~~~~~~~  380 (466)
T COG2319         367 LEGHSNVLSVSFSP  380 (466)
T ss_pred             ecCCceEEEEEECC
Confidence            22222277777777

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=5.5e-21  Score=147.50  Aligned_cols=235  Identities=16%  Similarity=0.220  Sum_probs=168.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .||+|+.-|.|+|.|+..            .+....+.+|...|+.+.+.   .+++++++.|..||+|++++..++..|
T Consensus       107 ~la~~G~~GvIrVid~~~------------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf  174 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVS------------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF  174 (385)
T ss_pred             eEEeecceeEEEEEecch------------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence            378888999999999987            45667788999999999998   679999999999999999999999887


Q ss_pred             ---ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeee----------------------------ee
Q 019326           79 ---HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTS----------------------------VK  127 (343)
Q Consensus        79 ---~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~  127 (343)
                         .+| ...|.++.|++++     .+|++++.|.++++|++...+....                            -.
T Consensus       175 GG~egH-rdeVLSvD~~~~g-----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  175 GGVEGH-RDEVLSVDFSLDG-----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             cccccc-cCcEEEEEEcCCC-----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence               467 9999999999999     8999999999999999973221111                            11


Q ss_pred             eccccEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEE
Q 019326          128 VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR-GRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLC  206 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  206 (343)
                      -|...|-|+.|-  |+++++=+-++.|..|.... ++.......+...                           ...+.
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~---------------------------~Ti~~  299 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA---------------------------TTILG  299 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc---------------------------eeeee
Confidence            244445555554  45777777777888887621 1111100000000                           01122


Q ss_pred             Eec-CCcceEEeeec---CCCeEEEEeCCCcEEEEECCCCceeE--Eec-ccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          207 ELD-GKKRILCAAPG---ENGVLFTGGEDRSITAWDTNSGKVAY--CIE-DAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       207 ~~~-~~~~i~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      .++ ....+.-+.|.   -.+.|+.|...|.|++||++..++..  ++. .-....|...+|+.++.         +|+.
T Consensus       300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---------~lv~  370 (385)
T KOG1034|consen  300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---------ILVL  370 (385)
T ss_pred             EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc---------EEEE
Confidence            222 22334444443   36789999999999999999876632  222 01245788889988887         9999


Q ss_pred             EcCCCcEEEEecc
Q 019326          280 ASSDGVICVWDVR  292 (343)
Q Consensus       280 ~~~dg~i~vwd~~  292 (343)
                      .+.|++|--||..
T Consensus       371 vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  371 VCDDGTVWRWDRV  383 (385)
T ss_pred             EeCCCcEEEEEee
Confidence            9999999999864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=2e-17  Score=144.02  Aligned_cols=297  Identities=24%  Similarity=0.307  Sum_probs=223.4

Q ss_pred             eccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC-CCeEEEEEcCCCeeeeEeccCC
Q 019326            6 GSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT-DDTIHLYDLSTSSSLGAIHHHE   82 (343)
Q Consensus         6 g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~   82 (343)
                      +..|+.+.+|+...           .......+..|...|..++|+  +..+++++. |+.+++|+..+++.+..+..| 
T Consensus       130 ~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  197 (466)
T COG2319         130 SSLDGTVKLWDLST-----------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-  197 (466)
T ss_pred             CCCCccEEEEEecC-----------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-
Confidence            34489999999874           134556677899999999999  667888875 999999999998888889888 


Q ss_pred             CCCeEEEEEeCCCCCCCCc-eEEEeeCCCeEEEEECCCcceee-eeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           83 SSSVTSLAFYTPQNLSVPR-NLFSTSADGFVSIFDADPFVLLT-SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      ...|.+++|+|++     . .+++++.|+.|++||...+.... .+..|.... ...|+|++..+++++.|+.+++|+++
T Consensus       198 ~~~v~~~~~~~~~-----~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         198 TDPVSSLAFSPDG-----GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             CCceEEEEEcCCc-----ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            8999999999887     5 55555999999999988777777 688888775 44899999889999999999999998


Q ss_pred             CCce-eEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeecCC-CeEEEE-eCCC
Q 019326          161 RGRR-SFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGEN-GVLFTG-GEDR  232 (343)
Q Consensus       161 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~-~~l~~~-~~dg  232 (343)
                      .... .... .+...+..+.+.|++..++++ .++.+.+|+..+........   +...+..+.+.+. ..++.+ ..|+
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  351 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG  351 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence            7765 3333 335788889999988888777 66889999998877665553   5556888888322 345555 6789


Q ss_pred             cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccccccee
Q 019326          233 SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLT  312 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~  312 (343)
                      .+.+|+...........  ....+..+.+.+ . ..       ....+..++.+.+|+..............    ..+.
T Consensus       352 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  416 (466)
T COG2319         352 TIRLWDLRTGKPLKTLE--GHSNVLSVSFSP-D-GR-------VVSSGSTDGTVRLWDLSTGSLLRNLDGHT----SRVT  416 (466)
T ss_pred             cEEeeecCCCceeEEec--CCceEEEEEECC-C-CC-------EEEEecCCCceEEEecccCeeeeeccCCC----CcEE
Confidence            99999998877333333  222278888877 5 32       33348999999999999864322221111    5688


Q ss_pred             EEEcCCCCceeccccCCCCCCCc
Q 019326          313 CLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       313 ~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      ...+++++.+.+.+..++.....
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~  439 (466)
T COG2319         417 SLDFSPDGKSLASGSSDNTIRLW  439 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEE
Confidence            88888888888776666554443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=1.3e-17  Score=139.98  Aligned_cols=285  Identities=14%  Similarity=0.140  Sum_probs=180.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee-CCCeEEEEEcCC-Cee--ee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG-TDDTIHLYDLST-SSS--LG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~-~~~--~~   76 (343)
                      +++...++.|++|++..       ..  +...+..+. +.+....++++  +++|++++ .++.|.+|+++. ++.  +.
T Consensus         5 y~~~~~~~~I~~~~~~~-------~g--~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~   74 (330)
T PRK11028          5 YIASPESQQIHVWNLNH-------EG--ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA   74 (330)
T ss_pred             EEEcCCCCCEEEEEECC-------CC--ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee
Confidence            34557789999999964       11  233444443 33556778888  77776654 578899999973 332  22


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCc-c---eeeeeeeccccEEEEEEecCCCEEEEEe-C
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPF-V---LLTSVKVHKKGVNDLAVHHSGKLALTVG-R  150 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~-~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~  150 (343)
                      ... . ......++++|++     +++++++. ++.|.+|++++. .   .+..+. +......++++|+++++++++ .
T Consensus        75 ~~~-~-~~~p~~i~~~~~g-----~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~  146 (330)
T PRK11028         75 ESP-L-PGSPTHISTDHQG-----RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK  146 (330)
T ss_pred             eec-C-CCCceEEEECCCC-----CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence            222 2 3456789999999     67777664 889999999642 2   222222 233467789999998886555 5


Q ss_pred             CCeEEEEEccCCceeE-------EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccc--c--eeEEEec-C------
Q 019326          151 DDCLAMVNLVRGRRSF-------YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAED--A--KLLCELD-G------  210 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~--~--~~~~~~~-~------  210 (343)
                      ++.|.+||+.+...+.       .......+..+.|+|++++++++  .++.|.+|++..  +  +.+..+. .      
T Consensus       147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~  226 (330)
T PRK11028        147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD  226 (330)
T ss_pred             CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence            6999999998643221       11234556789999999999888  489999999973  2  2233332 1      


Q ss_pred             CcceEEeeecC-CCeEEEEe-CCCcEEEEECCCCceeEEecccc---cccEEEEEEEecCCCCCCCCCCeEEEEEcC-CC
Q 019326          211 KKRILCAAPGE-NGVLFTGG-EDRSITAWDTNSGKVAYCIEDAH---SARVKGIVVLTKNDGGSTAENPYLVASASS-DG  284 (343)
Q Consensus       211 ~~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-dg  284 (343)
                      ......+.+++ +++++++. .++.|.+|++.+......+. .+   ......+.+++++.         +|++++. ++
T Consensus       227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~dg~---------~l~va~~~~~  296 (330)
T PRK11028        227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQPTETQPRGFNIDHSGK---------YLIAAGQKSH  296 (330)
T ss_pred             CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEEeccccCCceEECCCCC---------EEEEEEccCC
Confidence            11223466774 56777775 47899999986543222222 12   12456788888877         7776664 89


Q ss_pred             cEEEEeccCccccCCCcccccccccceeEEEc
Q 019326          285 VICVWDVRMAIKEKPLPLAEAKTNSRLTCLAG  316 (343)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~  316 (343)
                      +|.+|+++.... ....+..+.......|+++
T Consensus       297 ~v~v~~~~~~~g-~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        297 HISVYEIDGETG-LLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             cEEEEEEcCCCC-cEEEccccccCCCceEEEE
Confidence            999998863210 1112223334445666665

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=3e-19  Score=141.18  Aligned_cols=204  Identities=15%  Similarity=0.177  Sum_probs=160.8

Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-------ceeeeeeeccccEEEEEEecCC-CEEEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-------VLLTSVKVHKKGVNDLAVHHSG-KLALT  147 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~  147 (343)
                      ..+.+| +++|..++|+|.++    ..|++|+.|.+|.||.+..+       +++..+.+|...|..++|+|.. +.|++
T Consensus        75 P~v~GH-t~~vLDi~w~PfnD----~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls  149 (472)
T KOG0303|consen   75 PLVCGH-TAPVLDIDWCPFND----CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS  149 (472)
T ss_pred             CCccCc-cccccccccCccCC----ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence            345678 99999999999884    79999999999999998432       4677889999999999999965 78999


Q ss_pred             EeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CC--cceEEeeecCCC
Q 019326          148 VGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GK--KRILCAAPGENG  223 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~--~~i~~~~~~~~~  223 (343)
                      ++.|.+|.+||+.+++.+....++..+.++.|+.+|.++++. .|..|+|||.++++.+..-. |.  .+...+...++.
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            999999999999999998888899999999999999999999 99999999999999988764 33  345555555666


Q ss_pred             eEEEEe---CCCcEEEEECCCCce---eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          224 VLFTGG---EDRSITAWDTNSGKV---AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       224 ~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ++.+|.   .+..+.+||..+-+.   +.++.  .+..|.-=-+.++..        -..++|-.|+.||-|.+.+.
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~--------ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTS--------IVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCC--------EEEEEecCCcceEEEEecCC
Confidence            555553   478899999876543   33443  333443333444433        14456667999999999875

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=4.9e-19  Score=140.43  Aligned_cols=278  Identities=14%  Similarity=0.147  Sum_probs=196.4

Q ss_pred             CCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe---------eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           42 LSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS---------SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        42 ~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ..+|.++.|.   .+.++||+.|..|++|-+..+.         .+..+..| ...|+++.|+|++     ++|++|+.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H-~~aVN~vRf~p~g-----elLASg~D~   86 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRH-TRAVNVVRFSPDG-----ELLASGGDG   86 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCC-cceeEEEEEcCCc-----CeeeecCCC
Confidence            4689999998   4589999999999999887542         33455667 8999999999999     899999999


Q ss_pred             CeEEEEECC--------C--------cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCC
Q 019326          110 GFVSIFDAD--------P--------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGK  172 (343)
Q Consensus       110 g~i~iwd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~  172 (343)
                      |.|.+|-..        +        +.....+.+|...|..++|+|++.++++++.|+.+++||+..|+..... .+.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            999999764        2        2344566789999999999999999999999999999999999977654 4557


Q ss_pred             cceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----------CCcc-------------eEEeeecC-CCeEE
Q 019326          173 EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----------GKKR-------------ILCAAPGE-NGVLF  226 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----------~~~~-------------i~~~~~~~-~~~l~  226 (343)
                      .+..++|.|-++++++- .|...+.+.+...+....+.           ..+.             ...++|++ +.+++
T Consensus       167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            89999999999999988 77767777665443332221           1111             23345554 44555


Q ss_pred             EEeC----CC-----cEEEEECCC-CceeEEecccccccEEEEEEEecCC----CC-----CCCCCCeEEEEEcCCCcEE
Q 019326          227 TGGE----DR-----SITAWDTNS-GKVAYCIEDAHSARVKGIVVLTKND----GG-----STAENPYLVASASSDGVIC  287 (343)
Q Consensus       227 ~~~~----dg-----~i~i~d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~----~~-----~~~~~~~~l~s~~~dg~i~  287 (343)
                      +.+.    .+     ..++|+-.. .++...++ ....+...+.++|-.-    ..     ..-|-+-.++.++. ..|.
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svy  324 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVY  324 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEE
Confidence            5432    22     235555432 24555666 5566666666665311    00     00122224555554 5899


Q ss_pred             EEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          288 VWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       288 vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      |||.++.   .|......-+-..|+.++|++|+.+++..+.|+
T Consensus       325 vydtq~~---~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  325 VYDTQTL---EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             Eeccccc---cceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence            9999975   333333444556799999999999999888887

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=9.9e-19  Score=150.53  Aligned_cols=259  Identities=18%  Similarity=0.185  Sum_probs=191.7

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCee--eeEe----cc
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSS--LGAI----HH   80 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~   80 (343)
                      +.+.+|++...           ..+...+. -..+|+|++|+   +++++.|..+|+|.+||+..+..  ...+    ..
T Consensus       222 ~~~~vW~~~~p-----------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s  289 (555)
T KOG1587|consen  222 GVLLVWSLKNP-----------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS  289 (555)
T ss_pred             ceEEEEecCCC-----------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence            47899999862           23334443 46789999998   89999999999999999987755  2222    34


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce-e-----eeee------eccccEEEEEEecCC-CEEEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL-L-----TSVK------VHKKGVNDLAVHHSG-KLALT  147 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~-----~~~~------~~~~~v~~i~~~~~~-~~l~~  147 (343)
                      | ..+++.+.|..+..   +..+++++.||.|..|+++.... .     ....      .-...+++++|.+.. ..+++
T Consensus       290 h-~~~v~~vvW~~~~~---~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV  365 (555)
T KOG1587|consen  290 H-SEPVTAVVWLQNEH---NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV  365 (555)
T ss_pred             C-CcCeEEEEEeccCC---CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence            5 89999999987662   24599999999999999864322 1     1111      112378899998854 68899


Q ss_pred             EeCCCeEEEEEccC---Cc------eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcc-cceeEEEec-CCcceE
Q 019326          148 VGRDDCLAMVNLVR---GR------RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAE-DAKLLCELD-GKKRIL  215 (343)
Q Consensus       148 ~~~d~~i~~wd~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~-~~~~~~~~~-~~~~i~  215 (343)
                      |+.+|.|.--+-..   ..      ......+.+++..+.++|-...++.+ .|-.+++|... ...++..+. +...++
T Consensus       366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~  445 (555)
T KOG1587|consen  366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVT  445 (555)
T ss_pred             EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceee
Confidence            99999987743322   22      11233445789999999987766666 99999999987 666666666 566699


Q ss_pred             EeeecCC--CeEEEEeCCCcEEEEECCCC--ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          216 CAAPGEN--GVLFTGGEDRSITAWDTNSG--KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       216 ~~~~~~~--~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      +++|++.  ..|+++..||.|.+||+...  .++.+.. .+....+.+.+++.+.         .|+.|...|++++|++
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~---------~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGK---------LLAVGDANGTTHILKL  515 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCc---------EEEEecCCCcEEEEEc
Confidence            9999965  48999999999999999654  4555555 4456666777777676         9999999999999999


Q ss_pred             cCc
Q 019326          292 RMA  294 (343)
Q Consensus       292 ~~~  294 (343)
                      ...
T Consensus       516 ~~~  518 (555)
T KOG1587|consen  516 SES  518 (555)
T ss_pred             Cch
Confidence            753

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.7e-18  Score=152.65  Aligned_cols=282  Identities=16%  Similarity=0.167  Sum_probs=199.1

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccC--CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHH--ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-  118 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-  118 (343)
                      +-..+.|+  ...++++...-.|++||.+.++.+..|..+  ....|+.+.+-...+   ..++++|+.||.|+||+-- 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D---~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQD---DALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccc---hhheeeeccCceEEEecccc
Confidence            44556666  667888887778999999999998888644  146789998876542   3689999999999999752 


Q ss_pred             ----Ccceeeeeeecc-------ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCc--ceEEEEe-CCCC
Q 019326          119 ----PFVLLTSVKVHK-------KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKE--ASLIKFD-GSGE  184 (343)
Q Consensus       119 ----~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~-~~~~  184 (343)
                          +.+.+..+.+-.       +.=.-++|.....+|+++|.-..|+|||...............  ++.+.-+ +.|+
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence                233444333211       1113467877777888888789999999998877766665543  3333332 2468


Q ss_pred             EEEEE-eCCcEEEEEccccee---EEEec-CCcc--eEEeeecC-C-CeEEEEeCCCcEEEEECCCCce--eEEeccccc
Q 019326          185 KFFMV-TEEKVGIHQAEDAKL---LCELD-GKKR--ILCAAPGE-N-GVLFTGGEDRSITAWDTNSGKV--AYCIEDAHS  253 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~~~~---~~~~~-~~~~--i~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~h~  253 (343)
                      .++++ .||.+++||.+....   +...+ |...  |..+.+.. + ..|++|+.+|.|++||++....  ..++. .|.
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV-AHW 1301 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee-ecc
Confidence            88888 999999999986543   23332 5544  88888864 2 4699999999999999997422  22222 332


Q ss_pred             ---ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC--CcccccccccceeEEEcCCCCceeccccC
Q 019326          254 ---ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP--LPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       254 ---~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                         +.++++.+++..+         .+|+|+. +.|+||++........  .+.......+.+.|++|+|-..++++|..
T Consensus      1302 ~yGs~lTal~VH~hap---------iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAP---------IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred             ccCccceeeeeccCCC---------eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence               3589999999988         8999988 9999999986532221  12222344456899999999999999988


Q ss_pred             CCCCCCccccC
Q 019326          329 DSAPKGEEKAS  339 (343)
Q Consensus       329 ~~~~~~~~~~~  339 (343)
                      |..+-.+..++
T Consensus      1372 Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1372 DSTVSIYSCEK 1382 (1387)
T ss_pred             CceEEEeecCC
Confidence            88665554433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1e-19  Score=152.26  Aligned_cols=226  Identities=18%  Similarity=0.197  Sum_probs=168.2

Q ss_pred             eccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-------eee
Q 019326            6 GSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-------SSL   75 (343)
Q Consensus         6 g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-------~~~   75 (343)
                      .+.-|.|-||+++.+...       .-..+-.+ -....|+.+.|+   ...||+++.||.|++|.+..+       ...
T Consensus       599 ~g~gG~iai~el~~PGrL-------PDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe  670 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRL-------PDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE  670 (1012)
T ss_pred             cCCCceEEEEEcCCCCCC-------Cccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence            345689999999863221       11111111 135679999998   789999999999999998754       345


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      ..+..| ...|+++.|+|-.    .+.|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.||+|+
T Consensus       671 ~~lt~h-~eKI~slRfHPLA----advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  671 KILTIH-GEKITSLRFHPLA----ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             eeeecc-cceEEEEEecchh----hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence            567788 8999999999976    37999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCceeEEEE---cCCcceEEEEeCCCCEEEEE-----eCCcEEEEEcccc--eeEEEecCCcc----eEEeeecC
Q 019326          156 MVNLVRGRRSFYHK---IGKEASLIKFDGSGEKFFMV-----TEEKVGIHQAEDA--KLLCELDGKKR----ILCAAPGE  221 (343)
Q Consensus       156 ~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~--~~~~~~~~~~~----i~~~~~~~  221 (343)
                      +|+.++++......   .+.....+.|.-+|+++++.     +...+.+||.++-  ..+.+......    +.......
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds  825 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS  825 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence            99998876433222   12344568888899988777     3566888987753  23333221111    22222223


Q ss_pred             CCeEEEEeCCCcEEEEECCCCce
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~  244 (343)
                      +-++++|-.|..|++|.+-...+
T Consensus       826 ~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  826 NVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ceEEEecCCCceEEEEEecCCCc
Confidence            44788999999999999865443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.2e-18  Score=150.04  Aligned_cols=258  Identities=14%  Similarity=0.158  Sum_probs=187.4

Q ss_pred             CCeEEEEEcCCC-eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce--eee----eeeccccE
Q 019326           61 DDTIHLYDLSTS-SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL--LTS----VKVHKKGV  133 (343)
Q Consensus        61 dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~----~~~~~~~v  133 (343)
                      ++.+.+|+++.. .+...+..  ...|.++.|+|..    +.+++.|..+|.|.+||++.+..  ...    ...|..++
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~----p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFD----PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             CceEEEEecCCCCCceEEEec--CCceeEEEeccCC----cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            357999999876 34444444  5899999999998    58999999999999999976554  222    23588899


Q ss_pred             EEEEEecCC--CEEEEEeCCCeEEEEEccCCceeEE-------------EEcCCcceEEEEeCCC-CEEEEE-eCCcEEE
Q 019326          134 NDLAVHHSG--KLALTVGRDDCLAMVNLVRGRRSFY-------------HKIGKEASLIKFDGSG-EKFFMV-TEEKVGI  196 (343)
Q Consensus       134 ~~i~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~  196 (343)
                      ..+.|..+-  .-+++++.||.|..|+++.-.....             ......+..++|.+.. ..|+++ ..|.|..
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            999997754  4599999999999998875432110             1112456778888854 456666 7777776


Q ss_pred             EEccccee--------E-EEecCCcceEEeeecC--CCeEEEEeCCCcEEEEECC-CCceeEEecccccccEEEEEEEec
Q 019326          197 HQAEDAKL--------L-CELDGKKRILCAAPGE--NGVLFTGGEDRSITAWDTN-SGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       197 ~d~~~~~~--------~-~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      -+....+.        . ....|.++|.++.+++  ...+++++ |.+++||... ...++..+. .+...|++++|+|.
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSpt  452 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPT  452 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh-hccceeeeeEEcCc
Confidence            33332221        1 1122789999999884  34555555 9999999988 677887777 78888999999998


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccc-cccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAK-TNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ...        .++++..||.|.+||+......   |+.... .....+++.+++++++++.|...|.....+.
T Consensus       453 rpa--------vF~~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  453 RPA--------VFATVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             Cce--------EEEEEcCCCceehhhhhccccC---CcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            763        8999999999999999876322   222221 1455788889999999999999996665544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=4.2e-20  Score=148.89  Aligned_cols=276  Identities=16%  Similarity=0.203  Sum_probs=215.6

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      .-..+.++  |..|+.|+.-|.|-.+|..++++..++...  ..|.++.|..+.      .+++......++|||-.. .
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHne------q~~AVAQK~y~yvYD~~G-t  201 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNE------QFFAVAQKKYVYVYDNNG-T  201 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcch------HHHHhhhhceEEEecCCC-c
Confidence            34556776  899999999999999999999999998866  789999999887      445556677899999654 5


Q ss_pred             eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-eCCcEEEEEc
Q 019326          122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-TEEKVGIHQA  199 (343)
Q Consensus       122 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~  199 (343)
                      .++.++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-++ ..|+|.+|..
T Consensus       202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            66666644 46889999999999999999999999999999988766654 677888999999999999 9999999999


Q ss_pred             ccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          200 EDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       200 ~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      ...+++..+- |.++|.++++. .|.|+++.+.|..++|||++....+.++. . ..+...++++..+          +|
T Consensus       281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~-t-p~~a~~ls~Sqkg----------lL  348 (545)
T KOG1272|consen  281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR-T-PHPASNLSLSQKG----------LL  348 (545)
T ss_pred             CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee-c-CCCcccccccccc----------ce
Confidence            9888776554 99999999998 57899999999999999999988777776 2 4567788888876          44


Q ss_pred             EEEcCCCcEEEE-eccCccccCCCcccccccccceeEEEcCC------------CCceeccccCCCCCCCccccCccC
Q 019326          278 ASASSDGVICVW-DVRMAIKEKPLPLAEAKTNSRLTCLAGSS------------TKSFKRPQIGDSAPKGEEKASMED  342 (343)
Q Consensus       278 ~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~i~~~~~s~------------~~~~~~~~~~~~~~~~~~~~~~~~  342 (343)
                      |. |....+.|| |.-.+......+.......++|..+.|.|            -..++++|+++......+...+|.
T Consensus       349 A~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfet  425 (545)
T KOG1272|consen  349 AL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFET  425 (545)
T ss_pred             ee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchh
Confidence            44 455589999 44432212223333444555777777765            345788888888777666655553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=9.5e-19  Score=147.40  Aligned_cols=263  Identities=13%  Similarity=0.130  Sum_probs=202.5

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      .|..++|.  |..|+.+.. ..+.+||...|..+..+++| ...|.+++|+.+|     +.+++|+.|..|.+|+.+- +
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgH-KDtVycVAys~dG-----krFASG~aDK~VI~W~~kl-E   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGH-KDTVYCVAYAKDG-----KRFASGSADKSVIIWTSKL-E   85 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccc-cceEEEEEEccCC-----ceeccCCCceeEEEecccc-c
Confidence            78899998  666666553 46999999999999999999 9999999999999     8999999999999998642 2


Q ss_pred             eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcc
Q 019326          122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAE  200 (343)
Q Consensus       122 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~  200 (343)
                      -+..+ .|.+.|.|+.|+|-...|++++-+ ..-+|..... .+........+.+++|..+|++++.+ .+|+|.+-+..
T Consensus        86 G~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   86 GILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             ceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            22223 499999999999999899998864 4667876543 33344455678889999999999999 99999998644


Q ss_pred             cceeEEEec----CCcceEEeeecC------CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCC
Q 019326          201 DAKLLCELD----GKKRILCAAPGE------NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGST  270 (343)
Q Consensus       201 ~~~~~~~~~----~~~~i~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  270 (343)
                      . +..-.+.    .+.+|.+++|++      ...+++.....++.+|.+. |+.+..-. .-.-...++.+.+++.    
T Consensus       163 g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGE----  235 (1081)
T KOG1538|consen  163 G-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGE----  235 (1081)
T ss_pred             C-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCc----
Confidence            3 3333332    568899999983      2377888888888888876 55554333 3444567888988888    


Q ss_pred             CCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCC
Q 019326          271 AENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~  334 (343)
                           +++.|+.|+.+++|.-+.-...   .+  ...+.-|..++..|++.+.+.|..|+.+--
T Consensus       236 -----y~LiGGsdk~L~~fTR~GvrLG---Tv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  236 -----YILLGGSDKQLSLFTRDGVRLG---TV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             -----EEEEccCCCceEEEeecCeEEe---ec--cccceeEEEEEEccCCceEEEEEccCeeeh
Confidence                 9999999999999976542111   11  224557999999999999999999997643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=6.9e-18  Score=150.98  Aligned_cols=273  Identities=16%  Similarity=0.194  Sum_probs=190.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-------   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-------   72 (343)
                      .+++|+.||+|++|+.....     +.....+...++.-....+.++...  ++.+|.++.||.|++.+++..       
T Consensus      1063 ~FvsgS~DGtVKvW~~~k~~-----~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLE-----GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             eEEEecCCceEEEeeehhhh-----cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence            37899999999999998743     2223444455554456777777766  899999999999999998762       


Q ss_pred             eeeeEeccCCCCCeEEE-EEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEe
Q 019326           73 SSLGAIHHHESSSVTSL-AFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVG  149 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~  149 (343)
                      .+.+....+..+.+.++ +|.....   ...++.+...+.|..||++......+++  ...+.|++++.+|.+++++.|.
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~~~~~~---S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt 1214 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQ---SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT 1214 (1431)
T ss_pred             eeeecccccCCCceEEeeccccccc---ceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec
Confidence            12222223323444444 4443331   1378888999999999998876665554  2356899999999999999999


Q ss_pred             CCCeEEEEEccCCceeEEEEcC--CcceEEEEeCCC---CEEEEE---eCCcEEEEEcccceeEEEecCC----------
Q 019326          150 RDDCLAMVNLVRGRRSFYHKIG--KEASLIKFDGSG---EKFFMV---TEEKVGIHQAEDAKLLCELDGK----------  211 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~---~~~~i~~~d~~~~~~~~~~~~~----------  211 (343)
                      ..|.+.+||++-+..+....++  .++..+..+|-.   ...+++   ..+.+.+|++.++.....+-..          
T Consensus      1215 s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~ 1294 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYAL 1294 (1431)
T ss_pred             CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhc
Confidence            9999999999998888777766  445556665533   344443   4688999999998665554311          


Q ss_pred             -c----------ceEEeeecCCCeEEEEeCCCcEEEEECCCCcee-----------------------------------
Q 019326          212 -K----------RILCAAPGENGVLFTGGEDRSITAWDTNSGKVA-----------------------------------  245 (343)
Q Consensus       212 -~----------~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------------------  245 (343)
                       .          .+.|.....+..+++|+.|..|+.||....+..                                   
T Consensus      1295 Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~ 1374 (1431)
T KOG1240|consen 1295 PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIY 1374 (1431)
T ss_pred             ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhh
Confidence             0          112222225679999999999999998642211                                   


Q ss_pred             -------------EEec-------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          246 -------------YCIE-------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       246 -------------~~~~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                                   ....       ..|..+|++|++......        +|++++.||.|+||.
T Consensus      1375 ~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~--------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1375 QQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQP--------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCcc--------EEEEecCCCeeeecC
Confidence                         0000       357778888887766532        899999999999994

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.1e-19  Score=141.66  Aligned_cols=192  Identities=19%  Similarity=0.195  Sum_probs=157.1

Q ss_pred             EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE
Q 019326           87 TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF  166 (343)
Q Consensus        87 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  166 (343)
                      .+++|++++     ..+++|+.||++|+|+......+.....|...|.+++|+|||+.|++.+.| ..++|+.+++..+.
T Consensus       148 k~vaf~~~g-----s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDG-----SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             eEEEEcCCC-----CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            689999998     799999999999999988888888888899999999999999999999999 89999999996544


Q ss_pred             EEE---cCCcceEEEEeCCC---CEEEEE---eCCcEEEEEccccee------EEEecCCcceEEeeec-CCCeEEEEeC
Q 019326          167 YHK---IGKEASLIKFDGSG---EKFFMV---TEEKVGIHQAEDAKL------LCELDGKKRILCAAPG-ENGVLFTGGE  230 (343)
Q Consensus       167 ~~~---~~~~~~~~~~~~~~---~~~~~~---~~~~i~~~d~~~~~~------~~~~~~~~~i~~~~~~-~~~~l~~~~~  230 (343)
                      ...   .+.....+.|+.++   .+.+.+   ..+.+..|++...+-      .+.+.....|.+++.+ ++++++.|+.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            333   22345567787766   333333   456677766653222      2222245689999999 6789999999


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ||.|.|++..+.+.++-.+.+|...|+.+.|+|+.+         ++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr---------~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR---------YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC---------cccccccCCceeEEEEee
Confidence            999999999999999998889999999999999988         899999999999988865

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=1.3e-18  Score=143.00  Aligned_cols=264  Identities=13%  Similarity=0.102  Sum_probs=191.0

Q ss_pred             CCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCe-EEEEEeCCC--CCCCCceEEEeeCCCeEEEE
Q 019326           40 AHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSV-TSLAFYTPQ--NLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        40 ~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-~~l~~~~~~--~~~~~~~l~s~~~dg~i~iw  115 (343)
                      .|...|.|+.|. ...++..+.|..+.+|.--+......+.-. ...+ +.+..-+.+  .-.....|+.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p-~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP-DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC-cccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            366677788888 555666666777777665444333333222 1111 111111111  01123678899999999988


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEE
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVG  195 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  195 (343)
                      +- .++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-...-.........++.|++|.|+.+.++.+..+.+.
T Consensus        91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~  169 (737)
T KOG1524|consen   91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHIS  169 (737)
T ss_pred             cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEE
Confidence            74 45677788899999999999999999999999999999984322222233456789999999999999999888888


Q ss_pred             EEEcccc-eeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          196 IHQAEDA-KLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       196 ~~d~~~~-~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      +--+... ++++--.|.+-|.++.|++ .+++++|++|-..++||.. |..+..-. .|..+|++++|.|+.        
T Consensus       170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd~--------  239 (737)
T KOG1524|consen  170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPEK--------  239 (737)
T ss_pred             EeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeecccc--------
Confidence            8877654 4445555999999999984 6799999999999999977 77777777 899999999999994        


Q ss_pred             CeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          274 PYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                        .++.+|.. ++|   ++            ...-+.|..++||+||.-+..+.+.+.+.
T Consensus       240 --~~~v~S~n-t~R---~~------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  240 --DYLLWSYN-TAR---FS------------SPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             --ceeeeeee-eee---ec------------CCCccceEEEEEcCCCceeeccccCceEE
Confidence              45555543 444   11            12234599999999999999998888543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=7.8e-18  Score=132.25  Aligned_cols=234  Identities=18%  Similarity=0.211  Sum_probs=178.5

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC--CeEEEEEcc
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD--DCLAMVNLV  160 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--~~i~~wd~~  160 (343)
                      ...+..+.|+.+.     ..|..|+.||. ++|.................|.-+-|+..  +++..+.+  +.+++++++
T Consensus         5 ~~ti~~~~~Nqd~-----~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDS-----TLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             Ccceeeeeeccce-----eEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcc
Confidence            4567778888887     67888888874 77887665443222223335666667654  56655554  459999999


Q ss_pred             CCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec----CCcceEEeeecC-CCeEEEE--eCCCc
Q 019326          161 RGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD----GKKRILCAAPGE-NGVLFTG--GEDRS  233 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~~-~~~l~~~--~~dg~  233 (343)
                      .+..+.....+.++.++.++  .++++++-...|.|||+++.+++.++.    +...+.++.++. +.+++--  ...|.
T Consensus        77 k~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             cCceEEEEecCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence            99999999999999988885  567777755559999999999999887    334466666664 3466643  34689


Q ss_pred             EEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc-EEEEeccCccccCCCccccccccccee
Q 019326          234 ITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV-ICVWDVRMAIKEKPLPLAEAKTNSRLT  312 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~i~  312 (343)
                      |.+||..+-+++..+. +|.+++.+++|+++|.         +|||+|+.|+ |||+.+.++.+...+.  ......+|.
T Consensus       155 V~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~---------llATASeKGTVIRVf~v~~G~kl~eFR--RG~~~~~Iy  222 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTIN-AHKGPLAALAFSPDGT---------LLATASEKGTVIRVFSVPEGQKLYEFR--RGTYPVSIY  222 (391)
T ss_pred             EEEEEcccceeeeEEE-ecCCceeEEEECCCCC---------EEEEeccCceEEEEEEcCCccEeeeee--CCceeeEEE
Confidence            9999999999999999 9999999999999998         9999999997 7999999886444322  222345799


Q ss_pred             EEEcCCCCceeccccCCCCCCCcccc
Q 019326          313 CLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       313 ~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      +++|+++..|+.+.+..+.++.++..
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEec
Confidence            99999999999999999977665543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.3e-18  Score=133.83  Aligned_cols=270  Identities=11%  Similarity=0.103  Sum_probs=192.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee--eecc
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV--KVHK  130 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~  130 (343)
                      +.+|++...|.|++||..+++.+..|+++ ...++.++|....   .+..+.+++.||+|++||++.......+  ..+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~d---s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCD---SPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCC---CCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            56888999999999999999999999999 8999999998753   1478999999999999999876655444  3444


Q ss_pred             -ccEEEEEEecCCCEEEEEeC----CCeEEEEEccCCce-eE--EEEcCCcceEEEEeCCCC-EEEEE-eCCcEEEEEcc
Q 019326          131 -KGVNDLAVHHSGKLALTVGR----DDCLAMVNLVRGRR-SF--YHKIGKEASLIKFDGSGE-KFFMV-TEEKVGIHQAE  200 (343)
Q Consensus       131 -~~v~~i~~~~~~~~l~~~~~----d~~i~~wd~~~~~~-~~--~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~  200 (343)
                       .+..+++.+-.++.+++|..    +-.+.+||+|..++ +.  ...+...|++++|+|+.. .++++ .||.+.+||+.
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence             35666776666777777754    67899999998876 32  345678899999999765 55666 89999999997


Q ss_pred             cce----eEEEecCCcceEEeeecCCC--eEEEEeCCCcEEEEECCCCceeEEecccc------------cccEEEEEEE
Q 019326          201 DAK----LLCELDGKKRILCAAPGENG--VLFTGGEDRSITAWDTNSGKVAYCIEDAH------------SARVKGIVVL  262 (343)
Q Consensus       201 ~~~----~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~h------------~~~v~~~~~~  262 (343)
                      ...    +...+.+...|.++.|....  .+.+-+..+...+|+++.+.....+....            ..-|.+.  +
T Consensus       197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~--~  274 (376)
T KOG1188|consen  197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH--S  274 (376)
T ss_pred             CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc--c
Confidence            643    44555678889999998544  78888899999999999887555444110            0011111  1


Q ss_pred             ecCCCCCCCCCCeEEEEEcC-CCcEEEEecc---CccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          263 TKNDGGSTAENPYLVASASS-DGVICVWDVR---MAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~---~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      |...        ..++.++. -+...++-+.   ++............+..-|..+.|...+.++..+.+|+.+..++
T Consensus       275 ~~~~--------~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  275 PGDK--------DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             CCCc--------ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            2211        24555444 5666665444   33333444444455556677777877777888888887766555

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.3e-19  Score=160.89  Aligned_cols=247  Identities=15%  Similarity=0.188  Sum_probs=181.3

Q ss_pred             eCCCeEEEEEcCC--C----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC------cceeeee
Q 019326           59 GTDDTIHLYDLST--S----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP------FVLLTSV  126 (343)
Q Consensus        59 ~~dg~i~iwd~~~--~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~  126 (343)
                      +.+.++.+|.+..  .    +.+..+..  ....+.|+|.+.+.... .+|+.|..||.|.+||...      ...+.+.
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g~~~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~  112 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSYGSHSH-GLIAGGLEDGNIVLYDPASIIANASEEVLATK  112 (1049)
T ss_pred             ccccccceeeecccCccccccccccccc--cccceeeeecccCCCcc-ceeeccccCCceEEecchhhccCcchHHHhhh
Confidence            4455666665542  2    23344443  37789999998883111 2588999999999999854      2356677


Q ss_pred             eeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEE---EcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcc
Q 019326          127 KVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYH---KIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAE  200 (343)
Q Consensus       127 ~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~  200 (343)
                      ..|.+.|..+.|++.. +.|++|+.||.|.|||+...+.....   .....|.+++|+..-.++++.  .++.+.|||++
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            7899999999999976 59999999999999999886544433   345789999999877766555  77899999999


Q ss_pred             cceeEEEecC---CcceEEeeecCC--CeEEEEeCCC---cEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCC
Q 019326          201 DAKLLCELDG---KKRILCAAPGEN--GVLFTGGEDR---SITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       201 ~~~~~~~~~~---~~~i~~~~~~~~--~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                      ..+.+-.+..   ...+..+.|+++  ..+++++.|.   .|.+||+|.- .+++.+. +|...|.+|.|++.+.     
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~-----  266 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDP-----  266 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCc-----
Confidence            9988877763   344788999954  3556655543   5999999865 4667776 9999999999998874     


Q ss_pred             CCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc
Q 019326          272 ENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                         ++|+|++.|++|.+|+.++++.....+.    .+.-+..+.|.|...
T Consensus       267 ---~lllSsgkD~~ii~wN~~tgEvl~~~p~----~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  267 ---RLLLSSGKDNRIICWNPNTGEVLGELPA----QGNWCFDVQWCPRNP  309 (1049)
T ss_pred             ---hhhhcccCCCCeeEecCCCceEeeecCC----CCcceeeeeecCCCc
Confidence               2999999999999999999764333332    112245555555444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1e-17  Score=124.52  Aligned_cols=211  Identities=16%  Similarity=0.219  Sum_probs=156.1

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC----------cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP----------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      .|.+-+++|.+     ++|++|..+|.|.+..+..          ...+...++|.++|..++|+.  .+|++++ ||.|
T Consensus        12 tvf~qa~sp~~-----~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSK-----QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHhhCCcc-----eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceE
Confidence            45556788888     8999999999999998742          234555688999999999994  3677766 4999


Q ss_pred             EEEEccCCce------eEEEE--------cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEee
Q 019326          155 AMVNLVRGRR------SFYHK--------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAA  218 (343)
Q Consensus       155 ~~wd~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~  218 (343)
                      +-|..+....      +....        .-..|+.+.+.|..+.++.+ .|+.++.||+++++..+.++ |...+.++.
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            9998765332      11111        11457889999987777777 99999999999999999998 778898888


Q ss_pred             ec-CCCeEEEEeCCCcEEEEECCCCceeEEecc--------cc-cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          219 PG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED--------AH-SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       219 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      .- ....+++|++||++++||.++++.+..+..        .| ...|-+++.+.+           +|++|+ ...+.+
T Consensus       164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------WlvCGg-Gp~lsl  231 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------WLVCGG-GPKLSL  231 (325)
T ss_pred             ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----------eEEecC-CCceeE
Confidence            74 566899999999999999999998877651        11 234666666554           777776 457999


Q ss_pred             EeccCccccCCCcccccccccceeEEEcCCCC
Q 019326          289 WDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  320 (343)
                      |.+++....     ..+....++.-+.|-.+.
T Consensus       232 whLrsse~t-----~vfpipa~v~~v~F~~d~  258 (325)
T KOG0649|consen  232 WHLRSSEST-----CVFPIPARVHLVDFVDDC  258 (325)
T ss_pred             EeccCCCce-----EEEecccceeEeeeecce
Confidence            999987533     333444555555554443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.2e-17  Score=127.12  Aligned_cols=259  Identities=14%  Similarity=0.175  Sum_probs=187.8

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCC-------CeEEEEEcCCC------
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTD-------DTIHLYDLSTS------   72 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~d-------g~i~iwd~~~~------   72 (343)
                      |+.|.+.++..+.      .   ......|..|.+.|..++-+   ...|+|+..+       -.+-||.+...      
T Consensus        39 dNqVhll~~d~e~------s---~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~  109 (370)
T KOG1007|consen   39 DNQVHLLRLDSEG------S---ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS  109 (370)
T ss_pred             cceeEEEEecCcc------c---hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc
Confidence            6777777776521      1   11223344578889888877   5667776542       23779988643      


Q ss_pred             ---eeeeEec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce-eeeee-----eccccEEEEEEec--
Q 019326           73 ---SSLGAIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL-LTSVK-----VHKKGVNDLAVHH--  140 (343)
Q Consensus        73 ---~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~i~~~~--  140 (343)
                         +++..+. .+ -+.|.|+.|.|++     ..+++-. |..|.+|++..... +..+.     .+....++-+|+|  
T Consensus       110 ~tlE~v~~Ldtea-vg~i~cvew~Pns-----~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  110 STLECVASLDTEA-VGKINCVEWEPNS-----DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             chhhHhhcCCHHH-hCceeeEEEcCCC-----CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence               3344444 33 5789999999988     6777665 78999999976654 33332     2445677888988  


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccce-eEEEec-CCcce
Q 019326          141 SGKLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK-LLCELD-GKKRI  214 (343)
Q Consensus       141 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~-~~~~~~-~~~~i  214 (343)
                      +++.+++. .|+++..||+++.++...+.  +...+..+.|+|+.+++++.  .|+.+++||.+..+ +++.+. |..-+
T Consensus       183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence            66766664 57899999999887665443  45678899999998865554  89999999998654 566665 77889


Q ss_pred             EEeeecC--CCeEEEEeCCCcEEEEECCCC-----------------------------ceeEEecccccccEEEEEEEe
Q 019326          215 LCAAPGE--NGVLFTGGEDRSITAWDTNSG-----------------------------KVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       215 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-----------------------------~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      .++.|.+  +.++++|+.|..|.+|...+-                             ..+.++. .|...|.+++|+.
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd-ehEDSVY~~aWSs  340 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD-EHEDSVYALAWSS  340 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc-ccccceEEEeecc
Confidence            9999984  679999999999999965421                             1233555 7999999999997


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ..+        ..+|+-|.||++.|=.+..
T Consensus       341 adP--------WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  341 ADP--------WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             CCC--------eeEEEeccCceEEeecCCh
Confidence            654        4788999999999877764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=1.5e-16  Score=125.19  Aligned_cols=232  Identities=9%  Similarity=0.120  Sum_probs=175.7

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC--CeEEEEEC
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD--GFVSIFDA  117 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iwd~  117 (343)
                      ...+..+.|+  ...|..|+.|| .++|+............. ...|-.+-|+..       +++..+.+  ..+++++.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~-~~~IvEmLFSSS-------LvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTE-GVSIVEMLFSSS-------LVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCC-CeEEEEeecccc-------eeEEEecCCCceEEEEEc
Confidence            3456666687  55677788888 688887765443222323 456777777754       45555554  35999999


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC--CcceEEEEeC--CCCEEEEE---e
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG--KEASLIKFDG--SGEKFFMV---T  190 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~---~  190 (343)
                      +....+..+. ....|.++.++.+  .|+++-.+ .|+|||+++.+.+.....-  .+-..+++++  .+.+++.-   .
T Consensus        76 Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   76 KKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             ccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            8877777776 5668888888765  66666555 4999999999877665543  3333445554  45577665   6


Q ss_pred             CCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCc-EEEEECCCCceeEEecccc-cccEEEEEEEecCC
Q 019326          191 EEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRS-ITAWDTNSGKVAYCIEDAH-SARVKGIVVLTKND  266 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~~~~~  266 (343)
                      .|.|.+||..+-+....+. |.+++.+++|+ +|.+||++++.|+ ||+|.+.+|+.+.+++.+- ...|.+++|+++.+
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence            7899999999999998888 99999999999 6789999999987 7899999999999998443 35688999999988


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                               +|++.|..++|+||.++...
T Consensus       232 ---------~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  232 ---------FLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ---------eEEEecCCCeEEEEEecccc
Confidence                     99999999999999998653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.3e-16  Score=133.95  Aligned_cols=261  Identities=10%  Similarity=0.121  Sum_probs=169.9

Q ss_pred             EEeeCCCeEEEEEcCC-Ce--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECC-Ccce--eeeeee
Q 019326           56 ASGGTDDTIHLYDLST-SS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDAD-PFVL--LTSVKV  128 (343)
Q Consensus        56 ~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~  128 (343)
                      ++...++.|.+|++.+ ++  .+..+..  ......++++|++     ++|++++ .++.|.+|+++ +++.  +.... 
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~-----~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-   77 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDK-----RHLYVGVRPEFRVLSYRIADDGALTFAAESP-   77 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCC-----CEEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence            3446789999999964 32  4444543  3567789999998     6776654 58899999986 3332  22222 


Q ss_pred             ccccEEEEEEecCCCEEEEEeC-CCeEEEEEccCCc----eeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccc
Q 019326          129 HKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLVRGR----RSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAED  201 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~  201 (343)
                      ..+....++|+|+++++++++. ++.|.+|++.+..    ..........+..++++|++++++++  .++.|.+||+.+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            2345678999999998888765 8899999997432    12222223456778999999999777  679999999976


Q ss_pred             ceeEE-------EecCCcceEEeeecC-CCeEEEEeC-CCcEEEEECCC--Cc--eeEEecccc------cccEEEEEEE
Q 019326          202 AKLLC-------ELDGKKRILCAAPGE-NGVLFTGGE-DRSITAWDTNS--GK--VAYCIEDAH------SARVKGIVVL  262 (343)
Q Consensus       202 ~~~~~-------~~~~~~~i~~~~~~~-~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~h------~~~v~~~~~~  262 (343)
                      ...+.       ..........+.+++ +++++++.. ++.|.+|++..  ++  .+..+. .+      ......+.++
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~~~  236 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPADFSDTRWAADIHIT  236 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCCcCCCCccceeEEEC
Confidence            33221       122234456788874 567777665 89999999973  32  233332 11      1223457788


Q ss_pred             ecCCCCCCCCCCeEEEEEc-CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC-CCCCCCc
Q 019326          263 TKNDGGSTAENPYLVASAS-SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG-DSAPKGE  335 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~-~~~~~~~  335 (343)
                      |+++         +++++. .++.|.+|+++.... ....+...........+++++++++++.... ++.+..+
T Consensus       237 pdg~---------~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        237 PDGR---------HLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             CCCC---------EEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence            8776         888875 478999999965321 0111222222334667899999998886554 5544443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=129.57  Aligned_cols=223  Identities=16%  Similarity=0.150  Sum_probs=167.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEec-CCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeee---
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYP-AHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLG---   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~---   76 (343)
                      +|.+|..-|.|++|++.++            .....++ .|...|+.+..- +..|.+-+.|+.+.+|++.-+..+.   
T Consensus        27 rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S   94 (323)
T KOG0322|consen   27 RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS   94 (323)
T ss_pred             hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEee
Confidence            5788999999999999983            2333344 467788888877 7889999999999999987421110   


Q ss_pred             -----------Ee---------------------------------------ccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           77 -----------AI---------------------------------------HHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        77 -----------~~---------------------------------------~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                                 .+                                       ... .+.+.|..+....  ...-++++|
T Consensus        95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~K-lgsvmc~~~~~~c--~s~~lllaG  171 (323)
T KOG0322|consen   95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSK-LGSVMCQDKDHAC--GSTFLLLAG  171 (323)
T ss_pred             eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccc-cCceeeeeccccc--cceEEEEEe
Confidence                       00                                       001 2334444432221  111356778


Q ss_pred             eCCCeEEEEECCCcc----------eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC--ce--eEEEEc-C
Q 019326          107 SADGFVSIFDADPFV----------LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG--RR--SFYHKI-G  171 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~--~~--~~~~~~-~  171 (343)
                      -++|.|.+||+.++.          .......|..+|.++.+.+....=++++.+..+..|.+...  ..  ...... .
T Consensus       172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn  251 (323)
T KOG0322|consen  172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN  251 (323)
T ss_pred             ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence            889999999998863          33344568899999999987777788888889999988654  21  122222 3


Q ss_pred             CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCC-CeEEEEeCCCcEEEEEC
Q 019326          172 KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDT  239 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~  239 (343)
                      ..+..+.+.||++.++++ -|+.|++|..++.+++..++ |...|++++|+++ +++++++.|++|.+|++
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            457889999999999999 99999999999999999998 8899999999976 89999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=2.4e-17  Score=130.41  Aligned_cols=225  Identities=13%  Similarity=0.177  Sum_probs=169.9

Q ss_pred             EecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCe----eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC--C
Q 019326           37 SYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSS----SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD--G  110 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--g  110 (343)
                      ......++|..++.....|++|-.+|.+.+|..+.+.    .+..+..+  ..+..+.-++..    +..+++|+..  .
T Consensus       100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~----p~Iva~GGke~~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTD----PYIVATGGKENIN  173 (412)
T ss_pred             ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccCCCC----CceEecCchhccc
Confidence            3445577888888888889999999999999988543    34455555  667777777766    3567779998  8


Q ss_pred             eEEEEECCCcceeeeeeecc---------ccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEE
Q 019326          111 FVSIFDADPFVLLTSVKVHK---------KGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      .+.+||+.+.+.+.+-+.-.         -.++++.|.+.  ...|++++.-+.+++||.+.++.               
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR---------------  238 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR---------------  238 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc---------------
Confidence            99999998875554433211         13556777776  67778888778888888776542               


Q ss_pred             eCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEE-ecccccccE
Q 019326          180 DGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYC-IEDAHSARV  256 (343)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~h~~~v  256 (343)
                                              ++..+. ...+++++... .++.+++|..-|.+..||++.++.+.. +. +-.+.|
T Consensus       239 ------------------------PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tGsi  293 (412)
T KOG3881|consen  239 ------------------------PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITGSI  293 (412)
T ss_pred             ------------------------ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC-CccCCc
Confidence                                    233333 34566666665 467899999999999999999998888 55 899999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                      ++|..+|..+         +++++|-|..|||+|+++.+     .+.......+++++-+.++-.
T Consensus       294 rsih~hp~~~---------~las~GLDRyvRIhD~ktrk-----ll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  294 RSIHCHPTHP---------VLASCGLDRYVRIHDIKTRK-----LLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             ceEEEcCCCc---------eEEeeccceeEEEeecccch-----hhhhhhhhccccEEEecCCcc
Confidence            9999999988         99999999999999999853     556667778899998876643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.80  E-value=3.7e-16  Score=130.96  Aligned_cols=293  Identities=13%  Similarity=0.086  Sum_probs=192.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++-..+|.|.+.|..+            .+.+..+......-..+.|+  ++++++++.||.|.++|+.+.+.+.+++.
T Consensus         9 ~V~~~~~~~v~viD~~t------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGAT------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             EEEecCCCEEEEEECCC------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence            45666789999999877            45555665444433446677  78999999999999999999999999987


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECCCcceeeeeeec-------cccEEEEEEecCCCEEEEEeC-C
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDADPFVLLTSVKVH-------KKGVNDLAVHHSGKLALTVGR-D  151 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~-d  151 (343)
                      .  .....+++++++     ++++++. ..+.+.++|.++.+.++.+...       ...+..+..+|....++..-. .
T Consensus        77 G--~~~~~i~~s~DG-----~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~  149 (369)
T PF02239_consen   77 G--GNPRGIAVSPDG-----KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT  149 (369)
T ss_dssp             S--SEEEEEEE--TT-----TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred             C--CCcceEEEcCCC-----CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence            6  567889999999     7777665 5899999999999999888643       236778888888876665555 4


Q ss_pred             CeEEEEEccCCcee--EEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec-----CCcceEEee----
Q 019326          152 DCLAMVNLVRGRRS--FYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD-----GKKRILCAA----  218 (343)
Q Consensus       152 ~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-----~~~~i~~~~----  218 (343)
                      +.|.+.|....+.+  .............|+|++++++++  ..+.+.++|..+++....+.     |+.+...+-    
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~  229 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF  229 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence            88888898776543  344556778889999999998876  78899999999998877664     222333221    


Q ss_pred             ---ec---CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE----cCCCcEEE
Q 019326          219 ---PG---ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA----SSDGVICV  288 (343)
Q Consensus       219 ---~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----~~dg~i~v  288 (343)
                         |.   .+...++.-....+.+||..+.+.++++. ....+ .-+..+|+++         +++..    ...+.|.+
T Consensus       230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~---------~vwvd~~~~~~~~~v~v  298 (369)
T PF02239_consen  230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSR---------YVWVDTFLNPDADTVQV  298 (369)
T ss_dssp             EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-S---------EEEEE-TT-SSHT-EEE
T ss_pred             ceEEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCc---------cEEeeccCCCCCceEEE
Confidence               11   22233233333456678999999999999 55556 7888898887         88877    45589999


Q ss_pred             EeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          289 WDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      +|.++.+......   .....++..+.|+++|+.+-....
T Consensus       299 iD~~tl~~~~~i~---~~~~~~~~h~ef~~dG~~v~vS~~  335 (369)
T PF02239_consen  299 IDKKTLKVVKTIT---PGPGKRVVHMEFNPDGKEVWVSVW  335 (369)
T ss_dssp             EECCGTEEEE-HH---HHHT--EEEEEE-TTSSEEEEEEE
T ss_pred             EECcCcceeEEEe---ccCCCcEeccEECCCCCEEEEEEe
Confidence            9999874222111   122234899999999996644433

...

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=9.3e-19  Score=150.71  Aligned_cols=255  Identities=19%  Similarity=0.233  Sum_probs=194.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .+++|+.|..++||..++            ..++...+||.+.|+.++.+  ..++++++.|..|++|.+..+.++..+.
T Consensus       204 ~Iitgsdd~lvKiwS~et------------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr  271 (1113)
T KOG0644|consen  204 YIITGSDDRLVKIWSMET------------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR  271 (1113)
T ss_pred             eEeecCccceeeeeeccc------------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence            578999999999999887            56778889999999999998  6678999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee----e-eccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV----K-VHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~-~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      +| ++.|++++|+|-         .+.+.||++++||.+ ...+...    + .....+.++.|-.++..+++++.|+.-
T Consensus       272 gh-tgavtaiafsP~---------~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  272 GH-TGAVTAIAFSPR---------ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             cc-ccceeeeccCcc---------ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            99 999999999984         377899999999987 1111111    1 123467778888888899999999988


Q ss_pred             EEEEccCCceeEEEEcCCcceEEEEeCC-CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC--CCeEEEEe
Q 019326          155 AMVNLVRGRRSFYHKIGKEASLIKFDGS-GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE--NGVLFTGG  229 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~~~~  229 (343)
                      ..|.+.......     ....-+..+.+ ..+.+++ .+..+.+|++.++.....+. |..++..+.+++  .....+++
T Consensus       341 ~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  341 RNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             ccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence            888764322100     00000111111 1344555 78889999999998887766 677788888874  45777899


Q ss_pred             CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          230 EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       230 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .||...|||+-.|.+++....+|. .+..-+|++++.         .++....-|.+.|.....+
T Consensus       416 ~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgt---------s~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  416 YDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGT---------SIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             CCCceEeeecccCCcceeeecccc-eeeccccCCCCc---------eEecCCCCCceEEeccCCC
Confidence            999999999999998888775654 445567888877         7777777788888877654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.6e-16  Score=135.11  Aligned_cols=266  Identities=12%  Similarity=0.139  Sum_probs=193.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      -+++|..||.|.+|.--...     ...   .....+.-|...|++++|+  |.+|++|+..|.+.+|.+.+++ .+-+.
T Consensus       219 ~~Aa~d~dGrI~vw~d~~~~-----~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP  289 (792)
T KOG1963|consen  219 YLAAGDSDGRILVWRDFGSS-----DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP  289 (792)
T ss_pred             eEEEeccCCcEEEEeccccc-----ccc---ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccccc
Confidence            47899999999999754311     122   2334455699999999999  9999999999999999999988 33334


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec-----------cccEEEEEEecCCCEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH-----------KKGVNDLAVHHSGKLALTV  148 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~  148 (343)
                      .- .++|..+.++|++     .+.+....|+.|.+....+.+...++.+-           .+-.+.++++|.-+.++-.
T Consensus       290 RL-gs~I~~i~vS~ds-----~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln  363 (792)
T KOG1963|consen  290 RL-GSPILHIVVSPDS-----DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN  363 (792)
T ss_pred             cc-CCeeEEEEEcCCC-----CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence            34 7999999999999     78888899999999988666555444432           3446778899977888889


Q ss_pred             eCCCeEEEEEccCCceeEEEEc------C------CcceEEEEeCCCCEEEEEe---------C--CcEEEEEcccce--
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKI------G------KEASLIKFDGSGEKFFMVT---------E--EKVGIHQAEDAK--  203 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~~---------~--~~i~~~d~~~~~--  203 (343)
                      +..|.|.+||+-+...+.....      .      ..+..++.+..|.++++..         +  ..++.|......  
T Consensus       364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt  443 (792)
T KOG1963|consen  364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT  443 (792)
T ss_pred             CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence            9999999999988776544332      1      1244566677788888872         1  236677554332  


Q ss_pred             --eEEEec--CCcceEEeeec--CC-CeEEEEeCCCcEEEEECCCCc----------eeEEecccccccEEEEEEEecCC
Q 019326          204 --LLCELD--GKKRILCAAPG--EN-GVLFTGGEDRSITAWDTNSGK----------VAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       204 --~~~~~~--~~~~i~~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                        +...+.  |...+...++.  .. ..+++++.||.+++|-+...+          +...-. .|..++++++|+.+|.
T Consensus       444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s-y~k~~i~a~~fs~dGs  522 (792)
T KOG1963|consen  444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS-YHKTPITALCFSQDGS  522 (792)
T ss_pred             eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec-cccCcccchhhcCCCc
Confidence              223332  65555555554  22 388999999999999884322          111112 4788999999999984


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                                +++.+.|++|.+||..+
T Consensus       523 ----------lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  523 ----------LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ----------EEEEecCCEEEEecCCC
Confidence                      88888899999999998

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=2e-16  Score=122.12  Aligned_cols=232  Identities=19%  Similarity=0.254  Sum_probs=170.7

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecccc--EEEEEEecCCCEEEEEe-C------CCeE
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKG--VNDLAVHHSGKLALTVG-R------DDCL  154 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~-~------d~~i  154 (343)
                      ....+++|+.+.     ..++.|..+| .+||+.+..+.....+.+.+.  +.-+-|-  .++|+..+ .      -+.+
T Consensus         6 ~~~lsvs~NQD~-----ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    6 PKTLSVSFNQDH-----SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             CceeEEEEccCC-----ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceE
Confidence            455669999987     5666666655 799999875544333333332  2222232  33444333 2      2579


Q ss_pred             EEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc-cceeEEEec---CCcceEEeeecCC-CeEEE-E
Q 019326          155 AMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE-DAKLLCELD---GKKRILCAAPGEN-GVLFT-G  228 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~---~~~~i~~~~~~~~-~~l~~-~  228 (343)
                      .|||=...+++.......+|..+.+.+  ..+++..++.|.+|... +.+.++.+.   .+..+.+++...+ .+|+. |
T Consensus        78 iIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   78 IIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG  155 (346)
T ss_pred             EEEecccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence            999988888889999999999999975  57888899999999988 566666665   3455666666533 34443 5


Q ss_pred             eCCCcEEEEECCCCce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc-EEEEeccCccccCCCccccc
Q 019326          229 GEDRSITAWDTNSGKV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV-ICVWDVRMAIKEKPLPLAEA  305 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~  305 (343)
                      -.-|.|+|-|+...+.  ...+. +|...|.+++.+.++.         ++||+|..|+ |||||..++.+..  .+...
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~--E~RRG  223 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQ--ELRRG  223 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEee--eeecC
Confidence            5679999999986655  46777 9999999999999988         9999999997 7999999986444  33445


Q ss_pred             ccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          306 KTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       306 ~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      .....|.|++|||+..+++..+.++.++.+..
T Consensus       224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             CchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            55668999999999999999999997765443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=2.5e-16  Score=141.18  Aligned_cols=252  Identities=15%  Similarity=0.121  Sum_probs=180.2

Q ss_pred             ceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-------eeeeEeccCCCCCeEEEEEeCCCCCC
Q 019326           29 TLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-------SSLGAIHHHESSSVTSLAFYTPQNLS   98 (343)
Q Consensus        29 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~   98 (343)
                      ..+...+..+..|...|..++.+   +.+|+||+.||+|++||+..-       +...++... ...+.++...+.+   
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~~vt~~~~~--- 1110 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE-GSRVEKVTMCGNG--- 1110 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc-CCceEEEEeccCC---
Confidence            44567788888899999999988   589999999999999998642       233344434 6889999999998   


Q ss_pred             CCceEEEeeCCCeEEEEECCCc--c-----eeeeeeecc-ccEEEE-EEecC-C-CEEEEEeCCCeEEEEEccCCceeEE
Q 019326           99 VPRNLFSTSADGFVSIFDADPF--V-----LLTSVKVHK-KGVNDL-AVHHS-G-KLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus        99 ~~~~l~s~~~dg~i~iwd~~~~--~-----~~~~~~~~~-~~v~~i-~~~~~-~-~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                        +.+|.++.||.|++.+++..  +     +.+....+. +.+.++ +|... + ..++.+...+.|..||+++......
T Consensus      1111 --~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1111 --DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             --CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence              79999999999999998652  1     112222222 233333 34332 2 3777888889999999998776554


Q ss_pred             EEc---CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec--CCcceEEeeec--CC--CeEEE-Ee-CCCcEE
Q 019326          168 HKI---GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPG--EN--GVLFT-GG-EDRSIT  235 (343)
Q Consensus       168 ~~~---~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~--~~--~~l~~-~~-~dg~i~  235 (343)
                      ...   .+.+++++.+|.+++++.| ..|.+.+||++-+.++....  +..++..+..+  ..  ...++ ++ ..+.|.
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            443   3679999999999999999 99999999999998888776  45667766665  22  44444 44 578899


Q ss_pred             EEECCCCceeEEecccccc------------------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          236 AWDTNSGKVAYCIEDAHSA------------------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +|++.+|..-..+..+...                  ......+...+         .++++|+.|..||.||...+.
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~---------~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN---------GFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC---------ceeeecCCccceeeccCCCcc
Confidence            9999998766655512011                  11111111122         289999999999999998763

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.2e-16  Score=138.20  Aligned_cols=229  Identities=11%  Similarity=0.043  Sum_probs=159.1

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC---CeEEEEEcCCCee--eeEeccC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD---DTIHLYDLSTSSS--LGAIHHH   81 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~   81 (343)
                      +..|++||...       .     . ...+..|...+.+.+|+  |+.|+.++.+   ..|++||+.+++.  +..+.+ 
T Consensus       183 ~~~i~i~d~dg-------~-----~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-  248 (429)
T PRK01742        183 PYEVRVADYDG-------F-----N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-  248 (429)
T ss_pred             eEEEEEECCCC-------C-----C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-
Confidence            46889998865       1     1 23345678889999999  7888877653   4699999988754  333333 


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEe-eCCCeEEEE--ECCCcceeeeeeeccccEEEEEEecCCCEEEEEe-CCCeEEEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFST-SADGFVSIF--DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG-RDDCLAMV  157 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~w  157 (343)
                         .....+|+|++     +.|+.+ +.+|.+.||  |+.+++ ...+..+...+....|+|+|+.|+.++ .++...+|
T Consensus       249 ---~~~~~~wSPDG-----~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        249 ---HNGAPAFSPDG-----SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             ---ccCceeECCCC-----CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence               34468999999     666665 467865555  666654 445555667788999999998777655 57888888


Q ss_pred             EccCCc-eeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEE
Q 019326          158 NLVRGR-RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSIT  235 (343)
Q Consensus       158 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~  235 (343)
                      ++.... .........  ....|+|+++.++......+.+||+.+++....... .......|+ ++++++.++.++.+.
T Consensus       320 ~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~  396 (429)
T PRK01742        320 RMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGK  396 (429)
T ss_pred             EEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCce
Confidence            765422 122222222  457899999999888556677799988865433222 223456677 467888888888888


Q ss_pred             EEEC--CCCceeEEecccccccEEEEEEEec
Q 019326          236 AWDT--NSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       236 i~d~--~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      +|++  .+++....+. .|.+.+...+|+|.
T Consensus       397 ~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~  426 (429)
T PRK01742        397 VLQLVSADGRFKARLP-GSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence            8875  3578888887 88888888999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.1e-16  Score=141.47  Aligned_cols=232  Identities=15%  Similarity=0.176  Sum_probs=165.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCC----CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAH----LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      |++|+.||.|+||+--....    .+..-......+.++    .+.=.-+.|.  ..+|+++|.-..|+|||........
T Consensus      1126 lLtas~dGvIRIwk~y~~~~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKW----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             eeeeccCceEEEeccccccc----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            68999999999998644210    011111111222222    1111334565  4556666657899999999988888


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc---ceeeeeeecccc--EEEEEEecCC-CEEEEEeC
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF---VLLTSVKVHKKG--VNDLAVHHSG-KLALTVGR  150 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~i~~~~~~-~~l~~~~~  150 (343)
                      .+.......|+++.-....    ++.+++|..||.|++||.+..   ..+...+.|+..  |..+.+.++| ..|++|+.
T Consensus      1202 diP~~s~t~vTaLS~~~~~----gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVH----GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred             ecccCCCccceeecccccC----CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence            7765546778888665443    379999999999999998643   356777888886  9999999977 45999999


Q ss_pred             CCeEEEEEccCCceeEE------EEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec--------CCcceEE
Q 019326          151 DDCLAMVNLVRGRRSFY------HKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD--------GKKRILC  216 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~i~~  216 (343)
                      ||.|++||++.......      ...+...+++..++....+++++.+.|+||++...+. ..+.        ....+.|
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcccccCcCCCcce
Confidence            99999999998432211      1123458999999999999999669999999865432 2221        2356799


Q ss_pred             eeecCCC-eEEEEeCCCcEEEEECCCCc
Q 019326          217 AAPGENG-VLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       217 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~  243 (343)
                      ++|++-. ++++|+.|..|.||...+..
T Consensus      1357 L~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeecchhHhhhhccCCceEEEeecCCcC
Confidence            9999765 77888999999999877553

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=2.2e-16  Score=121.93  Aligned_cols=198  Identities=13%  Similarity=0.140  Sum_probs=163.8

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      ..+|+|.+|+++.     ..++.+.....|.||....   .+..+++..|...|+.++|.|..+.|++++.|..-++|..
T Consensus        10 ~~pitchAwn~dr-----t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-----TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCC-----ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            5789999999999     7899999999999998754   4578899999999999999999999999999999999998


Q ss_pred             cCC-c---eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEE-----EecCCcceEEeeecCCC-eEEEE
Q 019326          160 VRG-R---RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC-----ELDGKKRILCAAPGENG-VLFTG  228 (343)
Q Consensus       160 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~-----~~~~~~~i~~~~~~~~~-~l~~~  228 (343)
                      ..+ +   .+....+...+.++.|+|.++.|+++ ....|.++-.+......     ..++...|+++.|++++ ++++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            443 2   34566778999999999999999999 78888888877655442     22366789999999665 77888


Q ss_pred             eCCCcEEEEECC-----C-------------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          229 GEDRSITAWDTN-----S-------------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       229 ~~dg~i~i~d~~-----~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +.|+..++|..-     .             |+.+.++. ...+.|..+.|+|.+.         .|+-.+.|+.+.+=|
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVD  234 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCC---------EeeEecCCCceEEee
Confidence            999999999642     1             23334443 5678899999999988         999999999999999


Q ss_pred             ccCcc
Q 019326          291 VRMAI  295 (343)
Q Consensus       291 ~~~~~  295 (343)
                      ...+.
T Consensus       235 a~~p~  239 (361)
T KOG1523|consen  235 AAGPS  239 (361)
T ss_pred             cCCCc
Confidence            88763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.4e-15  Score=118.26  Aligned_cols=266  Identities=15%  Similarity=0.099  Sum_probs=181.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC----ee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS----SS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~----~~   74 (343)
                      .++++..|..|++|+-....          ...+..  .....|+|++|-   +..|+.|+..| |.+|.....    +.
T Consensus       112 ~fava~nddvVriy~ksst~----------pt~Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~  178 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSSTC----------PTKLKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN  178 (445)
T ss_pred             hhhhhccCcEEEEeccCCCC----------Cceecc--hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence            46889999999999976511          111111  235679999997   67888888866 999987531    11


Q ss_pred             ----------eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeeccccEEEEEEecCCC
Q 019326           75 ----------LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK  143 (343)
Q Consensus        75 ----------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  143 (343)
                                +..-.+|  .+|++|.|.+++     ..+++++. |..|.|||.+++..+.......+.+.-+.|+||+.
T Consensus       179 ~~~~s~~~~qvl~~pgh--~pVtsmqwn~dg-----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH--NPVTSMQWNEDG-----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccchhheeCCCC--ceeeEEEEcCCC-----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence                      1122344  799999999999     67887776 67899999999877666544567888999999999


Q ss_pred             EEEEEeCCCeEEEEEccC-CceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccce---------------eEEE
Q 019326          144 LALTVGRDDCLAMVNLVR-GRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK---------------LLCE  207 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~~  207 (343)
                      +|+++.-|+..++|+... .....-.-..+.+...+|+|.|..++.+..+.-++|.+.-..               ++..
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence            999999999999995433 333334444568899999999999998877777777654211               1111


Q ss_pred             ec------C----CcceEEeeecC-CCeEEEEeCCC--------cEEEEECCCCceeEEecc--cccccEEEEEEEecCC
Q 019326          208 LD------G----KKRILCAAPGE-NGVLFTGGEDR--------SITAWDTNSGKVAYCIED--AHSARVKGIVVLTKND  266 (343)
Q Consensus       208 ~~------~----~~~i~~~~~~~-~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~  266 (343)
                      +.      .    .+++.+++|++ +.+|++.-..+        .|.+||.+..-++.-...  ........+.|++..+
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n  411 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN  411 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence            11      1    36688899984 67887765443        367788775443332210  1122355667776643


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                            ++.+|..+=..|.+.-|++.-
T Consensus       412 ------~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  412 ------EGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             ------CCcEEEEEeccCceEeeeeEE
Confidence                  334677777778888887754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=7.2e-15  Score=113.64  Aligned_cols=232  Identities=11%  Similarity=0.130  Sum_probs=162.5

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCC-CCCeEEEEEeCCCCCCCCceEEEeeCC------CeEEE
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE-SSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVSI  114 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~i  114 (343)
                      ...+++|+  ..-+++|..+| .+||+.+--+.....+.+. .-.+..+-|..+-      +.+.|+.+      +.|.|
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~------laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNY------LALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhce------EEEecCCCCCCCCCceEEE
Confidence            34458888  45666666666 8999987544332222220 1223333343322      33344443      47999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC-CceeEEEEcCC-cceEEEEeCC--CCEEEEE-
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR-GRRSFYHKIGK-EASLIKFDGS--GEKFFMV-  189 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~-  189 (343)
                      ||-...+++.++. ...+|.++.+.++  .+++.- .+.|++|.... .+.+....... +-..+++.|.  ...++.- 
T Consensus        80 WDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   80 WDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG  155 (346)
T ss_pred             EecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence            9976777787777 6789999999877  555543 57899999874 44444444332 2223444443  3333333 


Q ss_pred             -eCCcEEEEEccccee---EEEecCCcceEEeeec-CCCeEEEEeCCCc-EEEEECCCCceeEEeccc-ccccEEEEEEE
Q 019326          190 -TEEKVGIHQAEDAKL---LCELDGKKRILCAAPG-ENGVLFTGGEDRS-ITAWDTNSGKVAYCIEDA-HSARVKGIVVL  262 (343)
Q Consensus       190 -~~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~-h~~~v~~~~~~  262 (343)
                       .-|.+.+.|+...+.   .....|...|.|++.. +|.++|+++..|+ |||||..+|+.+.+++.+ ....|.+|+|+
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence             578999999987665   4444599999999998 7889999999998 799999999999999854 34689999999


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      |+..         +|+.+|..|+|+||.++...
T Consensus       236 p~~s---------~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  236 PNSS---------WLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CCcc---------EEEEEcCCCeEEEEEeecCC
Confidence            9988         99999999999999998743

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=5.9e-16  Score=133.94  Aligned_cols=232  Identities=13%  Similarity=0.070  Sum_probs=152.1

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCCcce--eeeeeeccccEEE
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADPFVL--LTSVKVHKKGVND  135 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~  135 (343)
                      +..|.+||.+... ...+..+ ...+....|+|++     +.|+.++.+   ..|++||+.+++.  +..+.+   ....
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~-~~~v~~p~wSPDG-----~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~  252 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRS-SQPLMSPAWSPDG-----SKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGA  252 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccC-CCccccceEcCCC-----CEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCc
Confidence            4689999987554 4556666 6789999999999     778776653   3799999987653  333333   3446


Q ss_pred             EEEecCCCEEEEEe-CCCeEEE--EEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccc-eeEEEec
Q 019326          136 LAVHHSGKLALTVG-RDDCLAM--VNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDA-KLLCELD  209 (343)
Q Consensus       136 i~~~~~~~~l~~~~-~d~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~-~~~~~~~  209 (343)
                      ++|+|+|+.|+.++ .+|.+.+  ||+.+++..........+....|+|+++.++.+  .++...+|++... .....+.
T Consensus       253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~  332 (429)
T PRK01742        253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG  332 (429)
T ss_pred             eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec
Confidence            89999999888765 5776555  466666654444444567789999999987766  4677888876532 2223333


Q ss_pred             CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          210 GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       210 ~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      +..  .+..|+ +++.++..+.++ +.+||+.+++...... .+  ....+.|+|++.         +|+.++.++.+.+
T Consensus       333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~---------~i~~~s~~g~~~~  397 (429)
T PRK01742        333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGI---------MIIYSSTQGLGKV  397 (429)
T ss_pred             CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCC---------EEEEEEcCCCceE
Confidence            332  345677 456777776654 6669998887543222 22  234566777776         9999999999998


Q ss_pred             EeccCccccCCCcccccccccceeEEEcCCC
Q 019326          289 WDVRMAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       289 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      |.+..........+.  .+.+.+...+|+|-
T Consensus       398 l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~  426 (429)
T PRK01742        398 LQLVSADGRFKARLP--GSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence            887432111111121  22345777788764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=4e-18  Score=137.61  Aligned_cols=216  Identities=17%  Similarity=0.198  Sum_probs=179.1

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      -.-..+.++.+|     +.++.|+..|.|..+|..++++...+. -...|.++.|..+.++++++ ....+++||- .|.
T Consensus       130 FGPY~~~ytrnG-----rhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~Gt  201 (545)
T KOG1272|consen  130 FGPYHLDYTRNG-----RHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGT  201 (545)
T ss_pred             cCCeeeeecCCc-----cEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCc
Confidence            345678899998     899999999999999999999888887 35678999999887776665 5678999994 566


Q ss_pred             eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECC
Q 019326          164 RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~  240 (343)
                      .+........+..+.|.|.--+|+++ ..|.+..-|+.+|+.+..+. ..+.+..+.-.| +..+-+|...|+|.+|...
T Consensus       202 ElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  202 ELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             EEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence            77777777889999999999888888 88999999999999998887 556677777665 4577889999999999999


Q ss_pred             CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCC
Q 019326          241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  320 (343)
                      ..+++..+. .|.++|.+|++.+.+.         +++|.+.|..++|||+++-.     .+..+....+...+++|.-+
T Consensus       282 skePLvKiL-cH~g~V~siAv~~~G~---------YMaTtG~Dr~~kIWDlR~~~-----ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  282 SKEPLVKIL-CHRGPVSSIAVDRGGR---------YMATTGLDRKVKIWDLRNFY-----QLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             CcchHHHHH-hcCCCcceEEECCCCc---------EEeecccccceeEeeecccc-----ccceeecCCCcccccccccc
Confidence            999999988 9999999999999988         99999999999999999864     23333334456667776555


Q ss_pred             ce
Q 019326          321 SF  322 (343)
Q Consensus       321 ~~  322 (343)
                      .+
T Consensus       347 lL  348 (545)
T KOG1272|consen  347 LL  348 (545)
T ss_pred             ce
Confidence            44

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=2.2e-16  Score=130.03  Aligned_cols=206  Identities=10%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      .+.|+.++.||.+.+.+ +.++....+..| .+.+.+-.|+|+|     .-|++++.||.|++|.-.. -+..++.....
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH-~~A~~~gRW~~dG-----tgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~  146 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAH-AAAISSGRWSPDG-----AGLLTAGEDGVIKIWSRSG-MLRSTVVQNEE  146 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhh-hhhhhhcccCCCC-----ceeeeecCCceEEEEeccc-hHHHHHhhcCc
Confidence            35788899999999987 457888888999 9999999999999     7899999999999998543 44455555677


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-eEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR-SFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~  209 (343)
                      +|.|++|.|+.+-++-+. .+.+.+=-+..+.. +.-..+.+-+.++.|++..+.++++ .|-..++||.....+...-.
T Consensus       147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~  225 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA  225 (737)
T ss_pred             eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCCh
Confidence            999999999886555443 35677666665544 4455567889999999999999999 99999999988777777777


Q ss_pred             CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          210 GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       210 ~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      |..+|++++|.++..++.++.. +++            +.....+.|..++|++++.         .++.|+..|.+.+
T Consensus       226 ~ey~ITSva~npd~~~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGT---------Q~a~gt~~G~v~~  282 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKDYLLWSYN-TAR------------FSSPRVGSIFNLSWSADGT---------QATCGTSTGQLIV  282 (737)
T ss_pred             hccceeeeeeccccceeeeeee-eee------------ecCCCccceEEEEEcCCCc---------eeeccccCceEEE
Confidence            9999999999987766666532 333            4335678899999999988         8888888887655

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.5e-15  Score=117.39  Aligned_cols=218  Identities=12%  Similarity=0.116  Sum_probs=174.2

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      -..+|+|.+|+  ...+|.+.....|.||.....   +..+++..| ...|+.+.|.|..     +.|++++.|..-++|
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~s-----nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKS-----NRIVTCSHDRNAYVW   82 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCC-----CceeEccCCCCcccc
Confidence            45799999999  788999999999999988765   467788889 9999999999998     799999999999999


Q ss_pred             EC-C--CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-----EEEEcCCcceEEEEeCCCCEEE
Q 019326          116 DA-D--PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-----FYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       116 d~-~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      .. .  +.++...+..++..++++.|+|.++.|++|+.-..|.+|-++...-=     ....+...|.++.|+|++-.++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            98 3  34566667779999999999999999999999999999988765532     2334457789999999999999


Q ss_pred             EE-eCCcEEEEEccc------------------ceeEEEe-cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCc-ee
Q 019326          188 MV-TEEKVGIHQAED------------------AKLLCEL-DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGK-VA  245 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~------------------~~~~~~~-~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~  245 (343)
                      ++ .|+.+++|..--                  ++++.++ ...+.+..+.|+ .++.|+-.+.|..+.+-|..... .+
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v  242 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV  242 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence            99 899999986421                  1223333 245678899998 47889989999999999987664 34


Q ss_pred             EEecccccccEEEEEEEecC
Q 019326          246 YCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ..+...+ .+..++.|-...
T Consensus       243 ~~~~~~~-lP~ls~~~ise~  261 (361)
T KOG1523|consen  243 QSVATAQ-LPLLSVSWISEN  261 (361)
T ss_pred             cchhhcc-CCceeeEeecCC
Confidence            4444233 677777776665

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5.4e-17  Score=131.95  Aligned_cols=250  Identities=17%  Similarity=0.208  Sum_probs=184.1

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +.....+..|.+.|+.|.|+  |..|++|+.|..|.+||..+++....+...|...|..-.|.|...   ...+++++.|
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~---d~ti~~~s~d  208 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG---DRTIVTSSRD  208 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC---CcCceecccc
Confidence            34455677899999999999  999999999999999999999888777654477888878888763   3689999999


Q ss_pred             CeEEEEECCC-cce--eeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEE-----------------
Q 019326          110 GFVSIFDADP-FVL--LTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYH-----------------  168 (343)
Q Consensus       110 g~i~iwd~~~-~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-----------------  168 (343)
                      |.|++=.+.. +.+  ...+..|.++|.-++..|+. ..|.+++.|+.+.-+|++.+......                 
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9999887633 222  23344577777777777754 56777777777777776654211000                 


Q ss_pred             ---------------------------------------------EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc
Q 019326          169 ---------------------------------------------KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA  202 (343)
Q Consensus       169 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~  202 (343)
                                                                   ..+-.|++++++.++.-++++ .|-.|+++.-..+
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence                                                         011235778888666655555 8888888843321


Q ss_pred             e------------eEEE-ec-C--CcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEec
Q 019326          203 K------------LLCE-LD-G--KKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       203 ~------------~~~~-~~-~--~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      .            .++. ++ |  ...|..+.|-.  ..++++|+.-|.|.||+-.+++.++-+. +-...|+||.-+|.
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPH  447 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCC
Confidence            1            1111 22 2  23477777763  5799999999999999999999998888 66669999999999


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .+         .||+++-|.-|+||-..+.
T Consensus       448 ~P---------vLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  448 LP---------VLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             Cc---------hhhccCCccceeeecCCcc
Confidence            88         9999999999999988544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=3.3e-16  Score=119.47  Aligned_cols=180  Identities=19%  Similarity=0.269  Sum_probs=135.3

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeE---EecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCee---eeE
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLF---SYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSS---LGA   77 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~   77 (343)
                      +.+..+|+|.+...+.      ....+...   .-..+.+++++..|+   .+++.+.+-|-+..|||++++..   ...
T Consensus       118 Ts~D~LRlWri~~ee~------~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  118 TSSDFLRLWRIGDEES------RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             cccCeEEEEeccCcCC------ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            3445899999975221      11111111   112356899999998   89999999999999999998733   556


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-------------------------------------
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-------------------------------------  120 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------------------------  120 (343)
                      +-.| ..+|..++|...+    .+.|++.+.||.|++||++..                                     
T Consensus       192 LIAH-DKEV~DIaf~~~s----~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  192 LIAH-DKEVYDIAFLKGS----RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             EEec-CcceeEEEeccCc----cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            7788 9999999999866    379999999999999998521                                     


Q ss_pred             -----------ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCce------eEEEEcCCcceEEEEeC-
Q 019326          121 -----------VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRR------SFYHKIGKEASLIKFDG-  181 (343)
Q Consensus       121 -----------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~-  181 (343)
                                 .++..+++|.+.|+.|+|.|.. ..|++++.|..+.+||+.+...      +......++|+.+.|++ 
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence                       2345667899999999999964 7999999999999999976432      23334567889999985 


Q ss_pred             CCCEEEEEeCCcEEEE
Q 019326          182 SGEKFFMVTEEKVGIH  197 (343)
Q Consensus       182 ~~~~~~~~~~~~i~~~  197 (343)
                      ....++++.++.+.+.
T Consensus       347 ~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  347 QPDWIAICFGKKLEIL  362 (364)
T ss_pred             CCCEEEEEecCeeeEE
Confidence            5667777766666553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.4e-15  Score=120.84  Aligned_cols=246  Identities=13%  Similarity=0.146  Sum_probs=178.0

Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC------Ccceeeeee-eccccEEEEEEecCCCEEEEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD------PFVLLTSVK-VHKKGVNDLAVHHSGKLALTV  148 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~  148 (343)
                      +.+.+| .+.|++|.|+.++     ++|++|+.|..+++|+++      +.+++.... .|...|.+++|....+.+++|
T Consensus        50 KD~~~H-~GCiNAlqFS~N~-----~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   50 KDVREH-TGCINALQFSHND-----RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhhhhh-ccccceeeeccCC-----eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence            345678 8999999999998     899999999999999984      335555544 355899999999999999999


Q ss_pred             eCCCeEEEEEccCCceeEEEEcCC---cceEEEEeCCCCEEEEE-eCCcEEEEEcccce-e---EEEecCCcceEEeeec
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIGK---EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK-L---LCELDGKKRILCAAPG  220 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~-~---~~~~~~~~~i~~~~~~  220 (343)
                      +.+++|...|+++.+.+.......   .|..+..+|..+.+++. .++.+.+||.+... .   +..-........+.|+
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            999999999999999888777664   89999999999988888 89999999998754 2   2222245567777787


Q ss_pred             C--CCeEEEEeCCCcEEEEECCCCc-----------------------------eeEEec--------ccccc-------
Q 019326          221 E--NGVLFTGGEDRSITAWDTNSGK-----------------------------VAYCIE--------DAHSA-------  254 (343)
Q Consensus       221 ~--~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~--------~~h~~-------  254 (343)
                      +  ..+|++.+..+-+.+||.+...                             .+..+.        .-|+.       
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            5  4688999999999999987521                             000000        01111       


Q ss_pred             -----------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC----------Cc---------ccc
Q 019326          255 -----------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP----------LP---------LAE  304 (343)
Q Consensus       255 -----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~---------~~~  304 (343)
                                 .+.+++|..+          +-+++|+.+-.|++|.+........          .|         ..-
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence                       2333333333          2599999999999999965311000          00         001


Q ss_pred             cccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          305 AKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       305 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ..+..-++.+.|++-..++++..-.+..+.+..
T Consensus       354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ecccccccceeecCCcceEeccchhhheecccc
Confidence            123455788999999888888777776666554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.4e-16  Score=126.04  Aligned_cols=188  Identities=16%  Similarity=0.126  Sum_probs=148.8

Q ss_pred             EEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee
Q 019326           46 TTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL  123 (343)
Q Consensus        46 ~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  123 (343)
                      .+++|+  |..|++|+.||++|+|+..+...+.....| ...|.+|.|+|++     ++|++-+.| ..+||+.+++..+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~-~~eV~DL~FS~dg-----k~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH-HAEVKDLDFSPDG-----KFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh-cCccccceeCCCC-----cEEEEecCC-ceEEEEeccCchh
Confidence            567777  789999999999999998888888888888 8999999999999     899999999 9999999998766


Q ss_pred             eeeeec--cccEEEEEEecCC-----CEEEEEeCCCeEEEEEccCCcee------EEEEcCCcceEEEEeCCCCEEEEE-
Q 019326          124 TSVKVH--KKGVNDLAVHHSG-----KLALTVGRDDCLAMVNLVRGRRS------FYHKIGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       124 ~~~~~~--~~~v~~i~~~~~~-----~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      ......  ......+.|+.++     ..++....-+.|..||+.....-      ........+++++.+++|++++.+ 
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            665422  2255667787766     33333344567777776543321      111223579999999999999999 


Q ss_pred             eCCcEEEEEcccceeEEEec--CCcceEEeeecC-CCeEEEEeCCCcEEEEECC
Q 019326          190 TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGE-NGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~  240 (343)
                      .+|.|.+++..+.+.++..+  |..-|+.+.|+| .+++++-+.+..+.+..+.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999999999998888877  888999999996 4688888888888887664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1e-16  Score=132.33  Aligned_cols=166  Identities=16%  Similarity=0.167  Sum_probs=130.6

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +.....+.||++.|+|++|+  |.+|++|+.|-.+.|||.-..+++..+...|..-|.++.|.|..+   .+.+++|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn---nriv~sgAgD  116 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN---NRIVLSGAGD  116 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC---CeEEEeccCc
Confidence            34456778999999999999  999999999999999999988888888655499999999999763   3788999999


Q ss_pred             CeEEEEECCC----------cceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE---------
Q 019326          110 GFVSIFDADP----------FVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK---------  169 (343)
Q Consensus       110 g~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~---------  169 (343)
                      ..|+++|+..          .+....+..|...|..|+-.|++ +.+.+++.||+|+.+|++....-....         
T Consensus       117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            9999999963          23445566789999999999998 899999999999999998743111100         


Q ss_pred             --cCCcceEEEEeCCCC-EEEEE-eCCcEEEEEcc
Q 019326          170 --IGKEASLIKFDGSGE-KFFMV-TEEKVGIHQAE  200 (343)
Q Consensus       170 --~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~  200 (343)
                        .--...++.++|... +|+++ .+-..++||.+
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence              012345677777655 44555 67777888853

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=1.1e-15  Score=125.88  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=127.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEec---cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---------
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIH---HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---------  119 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------  119 (343)
                      +--|+.|-.-|.|.+.|....+..+.+.   ......|+|+.|.|.+.    ..++++-.+|.+++||..-         
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~----~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD----SLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC----ceEEEEEecCceEEeeccccccCCCCcc
Confidence            4567788888999999877532222121   11258899999999883    7888889999999997521         


Q ss_pred             -----c--------------ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEE
Q 019326          120 -----F--------------VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKF  179 (343)
Q Consensus       120 -----~--------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~  179 (343)
                           +              .++..+.-..+.|..++|+|||++|++.+.||.++|+|..+.+.+...+ .-+...|++|
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence                 0              1222233334688999999999999999999999999998876543322 2366889999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~  221 (343)
                      +|||++++++ .|..|.||.+...+.+..-. |...|..++|++
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999 99999999999999887765 889999999964

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.68  E-value=9.2e-16  Score=126.36  Aligned_cols=164  Identities=22%  Similarity=0.241  Sum_probs=127.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecC--CCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA--HLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS----   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~----   72 (343)
                      .|++|-.-|.|.+.|....          +...++....  .+..|+|+.|-   ...++++-.+|.+.+||....    
T Consensus       187 dllIGf~tGqvq~idp~~~----------~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t  256 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINF----------EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT  256 (636)
T ss_pred             ceEEeeccCceEEecchhh----------HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC
Confidence            4677777788888776541          1122111111  24789999997   567888888999999976410    


Q ss_pred             ------------------------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee
Q 019326           73 ------------------------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV  128 (343)
Q Consensus        73 ------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  128 (343)
                                              .++..+.-. ...|+.++|+|++     ++|++.+.||.++|+|..+.+++..++.
T Consensus       257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG-----~~LA~VSqDGfLRvF~fdt~eLlg~mkS  330 (636)
T KOG2394|consen  257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDG-----KYLATVSQDGFLRIFDFDTQELLGVMKS  330 (636)
T ss_pred             CCcccccCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCC-----ceEEEEecCceEEEeeccHHHHHHHHHh
Confidence                                    112222223 4689999999998     8999999999999999999998888887


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE-EEcCCcceEEEEeC
Q 019326          129 HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY-HKIGKEASLIKFDG  181 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~  181 (343)
                      .-+...|++|+|||++|++|++|.-|.+|.+...+.+.. ..+...|+.++|+|
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            788999999999999999999999999999998886654 55678899999997

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.6e-14  Score=118.92  Aligned_cols=260  Identities=14%  Similarity=0.133  Sum_probs=188.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|.+--.|++||+..          +.++-...+  -...|.-.-.+  -..++--..|.+|.+-... |.... +.
T Consensus        66 ~lAtG~YKP~ikvydlan----------LSLKFERhl--Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy~-~R  131 (703)
T KOG2321|consen   66 LLATGTYKPQIKVYDLAN----------LSLKFERHL--DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHYR-TR  131 (703)
T ss_pred             EEEecccCCceEEEEccc----------ceeeeeecc--cccceeEEEeccchhhheEeecCceeeehhhc-Ceeee-ee
Confidence            378899999999999986          122222211  12334333333  1223334456666554322 22111 11


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      -  ...-..++++...     .-|+.++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.
T Consensus       132 I--P~~GRDm~y~~~s-----cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  132 I--PKFGRDMKYHKPS-----CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             c--CcCCccccccCCC-----ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            1  1233455565444     35666666678999999999999999988899999999999899999999999999999


Q ss_pred             cCCceeEEEEcCC------------cceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC--CcceEEeeecC---
Q 019326          160 VRGRRSFYHKIGK------------EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG--KKRILCAAPGE---  221 (343)
Q Consensus       160 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~--~~~i~~~~~~~---  221 (343)
                      +....+.......            .|+++.|+.+|-.++++ ..|.+.+||+++.+++..-.|  ..+|..+.|.+   
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            9887665554432            38899999999999999 999999999999998877665  45678888863   


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ++.+++ .....++|||-.+|++...+.  ....++.+++.|+..         +++++-.++.+..|=+...
T Consensus       285 q~~v~S-~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sG---------m~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  285 QNKVVS-MDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSG---------MFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             CceEEe-cchHHhhhcccccCCceeecc--ccCCcCceeeecCCc---------eEEEecCCCcceeEEcccc
Confidence            244544 456789999999999999998  555699999999988         9999999998888776653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.67  E-value=2.7e-13  Score=116.05  Aligned_cols=258  Identities=13%  Similarity=0.117  Sum_probs=168.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      ++++++.+|.|..+|..+       ++.     +.............+..++.++.++.+|.+..+|..+|+.+......
T Consensus        67 ~v~v~~~~g~v~a~d~~t-------G~~-----~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        67 KVYAADADGTVVALDAET-------GKR-----LWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             EEEEECCCCeEEEEEccC-------CcE-----eeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            467888899999999876       222     22211111112234455788889999999999999999998877654


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEE-----EEEEecCCCEEEEEeCCCeEEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVN-----DLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                        ..+.+.....+      ..++.++.+|.++.||.++++.+.++........     +....  +..++.+..++.+..
T Consensus       135 --~~~~~~p~v~~------~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~a  204 (377)
T TIGR03300       135 --SEVLSPPLVAN------GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVA  204 (377)
T ss_pred             --ceeecCCEEEC------CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEE
Confidence              33322211122      3677788899999999999998877764332111     11112  246778888999999


Q ss_pred             EEccCCceeEEEEcCCcc------------eEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCC
Q 019326          157 VNLVRGRRSFYHKIGKEA------------SLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENG  223 (343)
Q Consensus       157 wd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~  223 (343)
                      +|.++++...........            ....+  .+..++++ .++.+..+|..+++.+....... ...... .++
T Consensus       205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~-~~~  280 (377)
T TIGR03300       205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV-DDN  280 (377)
T ss_pred             EEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE-eCC
Confidence            999999876654332110            01111  23455555 89999999999998887765322 122222 466


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      .++.++.+|.++.+|..+++.+............+....  +.         .+++++.||.|+++|..+++.
T Consensus       281 ~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g~---------~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       281 RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV--GG---------YLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE--CC---------EEEEEeCCCEEEEEECCCCCE
Confidence            788888999999999999998876641111222222222  22         889999999999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.3e-14  Score=120.71  Aligned_cols=214  Identities=12%  Similarity=0.054  Sum_probs=144.1

Q ss_pred             CCCCCeEEEEec--CceEEEee---CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEE-eeCCC--e
Q 019326           40 AHLSPITTVAVS--GTAAASGG---TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFS-TSADG--F  111 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s-~~~dg--~  111 (343)
                      .+...+.+.+|+  |+.|+..+   .+..|.+|++.+++..... .. ...+....|+|++     +.|+. .+.+|  .
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~-~~~~~~~~~SPDG-----~~La~~~~~~g~~~  268 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SF-PRHNGAPAFSPDG-----SKLAFALSKTGSLN  268 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CC-CCCcCCeEECCCC-----CEEEEEEcCCCCcE
Confidence            466789999999  77777643   2457999999887543322 22 2345578999999     56654 45455  5


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC-C--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-D--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      |++||+++++.... ..+...+....|+|+|+.|+..+.+ +  .|..+|+.+++...............|+|+|+.++.
T Consensus       269 I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        269 LYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             EEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEE
Confidence            89999988765443 3344567889999999988777654 3  455557766654433333344567899999999887


Q ss_pred             E-e-C--CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCc---EEEEECCCCceeEEecccccccEEEEE
Q 019326          189 V-T-E--EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRS---ITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       189 ~-~-~--~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      . . +  ..+.+||+.+++.. .+..........|+ ++..++.++.++.   +.++++. +.....+. +|...+...+
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~-~~~~~~~~p~  424 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP-ATDGQVKFPA  424 (429)
T ss_pred             EEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc-cCCCCcCCcc
Confidence            6 2 2  35888998877643 33322223355676 5667777776654   6777774 66677777 7888888888


Q ss_pred             EEec
Q 019326          261 VLTK  264 (343)
Q Consensus       261 ~~~~  264 (343)
                      |+|.
T Consensus       425 Wsp~  428 (429)
T PRK03629        425 WSPY  428 (429)
T ss_pred             cCCC
Confidence            8763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.3e-14  Score=111.89  Aligned_cols=236  Identities=15%  Similarity=0.154  Sum_probs=164.6

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ..+..++|+  -..+|++..|-.|++|+-.. ++...++......|+|++|.|.+    ...|+.|+..| |.+|.....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls----aselavgCr~g-IciW~~s~t  172 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS----ASELAVGCRAG-ICIWSDSRT  172 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC----cceeeeeecce-eEEEEcCcc
Confidence            346677888  45688899999999999776 66666665547889999999998    36777777764 889976321


Q ss_pred             ----c--------e--eeeeeeccccEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCC
Q 019326          121 ----V--------L--LTSVKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGE  184 (343)
Q Consensus       121 ----~--------~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~  184 (343)
                          +        .  +....+| .+|+++.|.+||..+++++. |..|.+||..++..+.... ..+.++.+.|+|++.
T Consensus       173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence                1        1  1112233 58999999999999999886 6789999999999877663 447788999999999


Q ss_pred             EEEEE-eCCcEEEEEcc-cceeEEEecCCcceEEeeecC-CC-eEEEEeCCCcEEEEECCCCc-------------eeEE
Q 019326          185 KFFMV-TEEKVGIHQAE-DAKLLCELDGKKRILCAAPGE-NG-VLFTGGEDRSITAWDTNSGK-------------VAYC  247 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~-------------~~~~  247 (343)
                      +++++ .|+..++|+.. +-...+..-..+.|...+|++ +. +|++.+..-.++-.......             ++..
T Consensus       252 ~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence            99999 99999999544 333444444667899999985 44 45555544443332221110             1111


Q ss_pred             ec--------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC--------cEEEEeccCc
Q 019326          248 IE--------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG--------VICVWDVRMA  294 (343)
Q Consensus       248 ~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg--------~i~vwd~~~~  294 (343)
                      +.        ..-.+++.+++|.|.+.         +|++.-..+        .|.+||.+..
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGe---------yLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGE---------YLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCC---------EEEEEEcCCchhhhhhhhhhhhccccc
Confidence            11        01146788999999988         888765433        4677887754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=2.7e-14  Score=111.12  Aligned_cols=186  Identities=12%  Similarity=0.073  Sum_probs=136.7

Q ss_pred             Eec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee
Q 019326           49 AVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV  126 (343)
Q Consensus        49 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  126 (343)
                      +|+  |+++|+++.- .+.|-|..+-+..+.+..-  ..|.-+.|..+.-    ..|.....++.|.+|++...+-...+
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl--dki~yieW~ads~----~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL--DKIVYIEWKADSC----HILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH--HHhhheeeeccce----eeeeeeeccceEEEEEeecceeEEEe
Confidence            455  9999999876 7888899888777766655  6788899998872    24445667889999999988888888


Q ss_pred             eeccccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CCc----------
Q 019326          127 KVHKKGVNDLAVHHSGKLA-LTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EEK----------  193 (343)
Q Consensus       127 ~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------  193 (343)
                      .....++.+++|+|+|+.+ .+...+-.|.+|.+.+.+.....-.+..+..++|+|+|++.+.+.  |..          
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            8788899999999999655 455668999999999988766666667778899999999888772  211          


Q ss_pred             -------------------------EEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCC
Q 019326          194 -------------------------VGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       194 -------------------------i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~  241 (343)
                                               +.+||..-.-.+..+...-.+..+.|++ +++++.|+.|+.+++.+--+
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence                                     2222211111111112234577788887 78999999999999876544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.6e-14  Score=121.11  Aligned_cols=230  Identities=15%  Similarity=0.084  Sum_probs=151.0

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC---CCeEEEEEcCCCeeeeEeccCCCC
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT---DDTIHLYDLSTSSSLGAIHHHESS   84 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~   84 (343)
                      ..|.+||...             .....+..|...+.+.+|+  ++.|+..+.   ...|.+||+.+++... +... ..
T Consensus       184 ~~l~i~D~~g-------------~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~-~g  248 (433)
T PRK04922        184 YALQVADSDG-------------YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF-RG  248 (433)
T ss_pred             EEEEEECCCC-------------CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC-CC
Confidence            3577888754             1122334567789999998  778887764   3469999998876543 3333 34


Q ss_pred             CeEEEEEeCCCCCCCCceE-EEeeCCC--eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-CCe--EEEEE
Q 019326           85 SVTSLAFYTPQNLSVPRNL-FSTSADG--FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-DDC--LAMVN  158 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~--i~~wd  158 (343)
                      ...+..|+|++     +.| ++.+.+|  .|++||+.+++. ..+..+.......+|+|+++.|+..+. +|.  |+++|
T Consensus       249 ~~~~~~~SpDG-----~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d  322 (433)
T PRK04922        249 INGAPSFSPDG-----RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA  322 (433)
T ss_pred             CccCceECCCC-----CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            55678999999     555 4556655  599999988764 344445555667899999998887764 444  77777


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC---CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeC---
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE---EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGE---  230 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~---  230 (343)
                      +.+++..............+|+|+|+.++.. .+   ..|.+||+.+++.. .+.+........|+ +++.++..+.   
T Consensus       323 l~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g  401 (433)
T PRK04922        323 ASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGG  401 (433)
T ss_pred             CCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCC
Confidence            7776644333333445568999999999876 32   25889999877654 44433334455777 4565555444   


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      .+.|.+++.. +.....+. .+.+.+...+|+|
T Consensus       402 ~~~L~~~~~~-g~~~~~l~-~~~g~~~~p~wsp  432 (433)
T PRK04922        402 RGVLAAVSTD-GRVRQRLV-SADGEVREPAWSP  432 (433)
T ss_pred             ceEEEEEECC-CCceEEcc-cCCCCCCCCccCC
Confidence            2458888885 44555665 4556666666654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.8e-13  Score=116.28  Aligned_cols=231  Identities=12%  Similarity=0.058  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      .|.+||.+..... .+..+ ...+...+|+|++     +.|+..+.   +..|.+|++.+++... +....+.+...+|+
T Consensus       180 ~l~~~d~dg~~~~-~lt~~-~~~~~~p~wSPDG-----~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~S  251 (429)
T PRK03629        180 ELRVSDYDGYNQF-VVHRS-PQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFS  251 (429)
T ss_pred             eEEEEcCCCCCCE-EeecC-CCceeeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEEC
Confidence            6889998755443 34445 5789999999999     67765442   4579999998875432 22233345568999


Q ss_pred             cCCCEEEEE-eCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CC--cEEEEEcccceeEEEecCCc
Q 019326          140 HSGKLALTV-GRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EE--KVGIHQAEDAKLLCELDGKK  212 (343)
Q Consensus       140 ~~~~~l~~~-~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~  212 (343)
                      |||+.|+.. +.+|  .|++||+.+++..........+....|+|+++.++...  ++  .|.++++.+++..+......
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence            999988765 3344  58999998887655544445677899999999887772  33  35555666655433222333


Q ss_pred             ceEEeeecC-CCeEEEEeC-C--CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc---
Q 019326          213 RILCAAPGE-NGVLFTGGE-D--RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV---  285 (343)
Q Consensus       213 ~i~~~~~~~-~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~---  285 (343)
                      ......|++ ++.++..+. +  ..|.+||+.+++. ..+...+  ......|+|++.         +|+.++.++.   
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~--~~~~p~~SpDG~---------~i~~~s~~~~~~~  399 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF--LDETPSIAPNGT---------MVIYSSSQGMGSV  399 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC--CCCCceECCCCC---------EEEEEEcCCCceE
Confidence            445677774 566665443 3  3588899987763 3443121  223456777666         8988888764   


Q ss_pred             EEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          286 ICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      +.++++.... ..  .+.  .+.+.+...+|+|
T Consensus       400 l~~~~~~G~~-~~--~l~--~~~~~~~~p~Wsp  427 (429)
T PRK03629        400 LNLVSTDGRF-KA--RLP--ATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEECCCCC-eE--ECc--cCCCCcCCcccCC
Confidence            6677775432 11  111  1234466677765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.7e-13  Score=116.99  Aligned_cols=213  Identities=10%  Similarity=0.047  Sum_probs=143.6

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEEEECCCcceeeeeeeccccEEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSIFDADPFVLLTSVKVHKKGVNDLAV  138 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  138 (343)
                      ..|.++|.+. .....+..+ ...+.+.+|+|++     +.|+..+.   +..|++||+.+++. ..+..+.+.+...+|
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~-~~~v~~p~wSpDG-----~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~  253 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDG-SSLVLTPRFSPNR-----QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF  253 (435)
T ss_pred             eEEEEECCCC-CCcEEEecC-CCCeEeeEECCCC-----CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence            3788899864 444556566 6889999999999     67776653   46899999988764 344456667788999


Q ss_pred             ecCCCEEE-EEeCCCe--EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--C--CcEEEEEcccceeEEEecCC
Q 019326          139 HHSGKLAL-TVGRDDC--LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--E--EKVGIHQAEDAKLLCELDGK  211 (343)
Q Consensus       139 ~~~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~~~d~~~~~~~~~~~~~  211 (343)
                      +|+|+.|+ +.+.++.  |++||+.+++...............|+|+++.++...  +  ..|.++|+..++......+.
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~  333 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG  333 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC
Confidence            99998775 4455554  7788988877654444444556789999999888773  2  35888888766554433344


Q ss_pred             cceEEeeec-CCCeEEEEeCC---CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC----
Q 019326          212 KRILCAAPG-ENGVLFTGGED---RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD----  283 (343)
Q Consensus       212 ~~i~~~~~~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d----  283 (343)
                      ..+....|+ +++.++....+   ..|.+||+..+. ...+.  ....+....|+|++.         +|+..+.+    
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt--~~~~~~~p~~spDG~---------~i~~~~~~~~~~  401 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT--SGFLVEGPTWAPNGR---------VIMFFRQTPGSG  401 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc--CCCCCCCCeECCCCC---------EEEEEEccCCCC
Confidence            556667787 45666655433   368888986544 34444  223466778888776         66654432    


Q ss_pred             --CcEEEEeccCc
Q 019326          284 --GVICVWDVRMA  294 (343)
Q Consensus       284 --g~i~vwd~~~~  294 (343)
                        ..|.++|+...
T Consensus       402 ~~~~L~~~dl~g~  414 (435)
T PRK05137        402 GAPKLYTVDLTGR  414 (435)
T ss_pred             CcceEEEEECCCC
Confidence              25777777654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=2.1e-11  Score=102.64  Aligned_cols=265  Identities=17%  Similarity=0.221  Sum_probs=173.6

Q ss_pred             eEEeccC----CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC----CCeEEEEEcCCC
Q 019326            3 LIAGSYE----KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT----DDTIHLYDLSTS   72 (343)
Q Consensus         3 l~~g~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~----dg~i~iwd~~~~   72 (343)
                      +++|++.    +.|++|++...        ..++..+.... -......|+++  +++|++...    +|.|..|.+...
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~--------~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~   72 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEE--------TGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD   72 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETT--------TTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT
T ss_pred             EEEEcCCCCCCCcEEEEEEcCC--------CCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC
Confidence            6778877    79999999541        22344344332 23445567776  788888766    578999988764


Q ss_pred             ----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCC-cceeee---ee--e--------ccccE
Q 019326           73 ----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADP-FVLLTS---VK--V--------HKKGV  133 (343)
Q Consensus        73 ----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~---~~--~--------~~~~v  133 (343)
                          +.+...... ......++++|++     ++|+++.. +|.|.++++.. +.....   +.  +        .....
T Consensus        73 ~g~L~~~~~~~~~-g~~p~~i~~~~~g-----~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~  146 (345)
T PF10282_consen   73 TGTLTLLNSVPSG-GSSPCHIAVDPDG-----RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP  146 (345)
T ss_dssp             TTEEEEEEEEEES-SSCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred             cceeEEeeeeccC-CCCcEEEEEecCC-----CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence                233344433 4566789999999     77777765 89999999976 333222   11  0        12356


Q ss_pred             EEEEEecCCCEEEEEeC-CCeEEEEEccCCc--eeE----EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcc--cc
Q 019326          134 NDLAVHHSGKLALTVGR-DDCLAMVNLVRGR--RSF----YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAE--DA  202 (343)
Q Consensus       134 ~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~--~~  202 (343)
                      .++.++|+++++++... ...|.+|++....  ...    .......+..+.|+|+++++++.  .++.|.++++.  ++
T Consensus       147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence            78999999998877654 4679999997765  222    22334667889999999998888  68889999988  33


Q ss_pred             e--eEEEec-------CCcceEEeeec-CCCeEEEEe-CCCcEEEEECC--CCc--eeEEecccccccEEEEEEEecCCC
Q 019326          203 K--LLCELD-------GKKRILCAAPG-ENGVLFTGG-EDRSITAWDTN--SGK--VAYCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       203 ~--~~~~~~-------~~~~i~~~~~~-~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      .  .+..+.       .......+.++ ++++|+++. ..+.|.+|++.  +++  .+..+. ......+.++++|+++ 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~-  304 (345)
T PF10282_consen  227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGR-  304 (345)
T ss_dssp             EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSS-
T ss_pred             ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCC-
Confidence            2  223332       12246777887 466666554 57789999993  233  334444 3345589999999887 


Q ss_pred             CCCCCCCeEEEEEc-CCCcEEEEecc
Q 019326          268 GSTAENPYLVASAS-SDGVICVWDVR  292 (343)
Q Consensus       268 ~~~~~~~~~l~s~~-~dg~i~vwd~~  292 (343)
                              +|+++. .++.|.+|+++
T Consensus       305 --------~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  305 --------YLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             --------EEEEEETTTTEEEEEEEE
T ss_pred             --------EEEEEecCCCeEEEEEEe
Confidence                    777665 66799999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=2.3e-13  Score=106.05  Aligned_cols=267  Identities=12%  Similarity=0.102  Sum_probs=182.4

Q ss_pred             CCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           42 LSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        42 ~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      -+.|.-+.|.   --.|.....++.|.+|++...+-...++.. ...+.+++|+|++.    ..|.+...+-.|.+|.+.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agls~~~WSPdgr----hiL~tseF~lriTVWSL~  122 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGLSSISWSPDGR----HILLTSEFDLRITVWSLN  122 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcceeeeECCCcc----eEeeeecceeEEEEEEec
Confidence            3567777777   234566678899999999999999999988 89999999999993    456677779999999998


Q ss_pred             CcceeeeeeeccccEEEEEEecCCCEEEEEeC------------------------------------CCeEEEEEccCC
Q 019326          119 PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR------------------------------------DDCLAMVNLVRG  162 (343)
Q Consensus       119 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------------------------d~~i~~wd~~~~  162 (343)
                      +.+.. -++-.+..+..++|+|+|++.+.+++                                    +..+.+||.--.
T Consensus       123 t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le  201 (447)
T KOG4497|consen  123 TQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE  201 (447)
T ss_pred             cceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence            74432 23323446688888888887766653                                    223445553322


Q ss_pred             ceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEE-----------------------------------
Q 019326          163 RRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC-----------------------------------  206 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~-----------------------------------  206 (343)
                      -.+....-+-.+..++|+|.+++++++ .|+.+++.+--+-+...                                   
T Consensus       202 ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p  281 (447)
T KOG4497|consen  202 YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP  281 (447)
T ss_pred             heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence            333333444567789999999999999 89888775422111000                                   


Q ss_pred             -------------------------Eec-------CCcceEEeeecCCC-eEEEEeC--CCcEEEEECCCCceeEEeccc
Q 019326          207 -------------------------ELD-------GKKRILCAAPGENG-VLFTGGE--DRSITAWDTNSGKVAYCIEDA  251 (343)
Q Consensus       207 -------------------------~~~-------~~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~  251 (343)
                                               .++       ....+.-++|+.+. ++++-.+  -+.+-+||+++.+....+.  
T Consensus       282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--  359 (447)
T KOG4497|consen  282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--  359 (447)
T ss_pred             CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--
Confidence                                     000       01224457777554 4444332  2568999999887666665  


Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ...+|....|.|...         .|+.+....++++|......     .+.....+-.|..+.|.-+|.+++.-..|-
T Consensus       360 Qk~piraf~WdP~~p---------rL~vctg~srLY~W~psg~~-----~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  360 QKHPIRAFEWDPGRP---------RLVVCTGKSRLYFWAPSGPR-----VVGVPKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             hccceeEEEeCCCCc---------eEEEEcCCceEEEEcCCCce-----EEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence            678999999999987         67777667789999887532     222222334688899999998887766665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.5e-13  Score=117.90  Aligned_cols=212  Identities=11%  Similarity=0.043  Sum_probs=139.5

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCCcceeeeeeeccccEEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADPFVLLTSVKVHKKGVNDLAV  138 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~  138 (343)
                      ..|.+||.... ....+..+ ...+.+.+|+|++     +.|+..+.+   ..|++||+.+++... +....+.....+|
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~-~~~v~~p~wSpDg-----~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~  255 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRS-AEPILSPAWSPDG-----KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF  255 (433)
T ss_pred             EEEEEECCCCC-CceEeecC-CCccccccCCCCC-----CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence            46899998644 44455556 6789999999999     677776643   469999998776432 3334445567899


Q ss_pred             ecCCCEEE-EEeCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CCc--EEEEEcccceeEEEecCC
Q 019326          139 HHSGKLAL-TVGRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EEK--VGIHQAEDAKLLCELDGK  211 (343)
Q Consensus       139 ~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--i~~~d~~~~~~~~~~~~~  211 (343)
                      +|+|+.++ +.+.+|  .|++||+.+++..............+|+|+++.++...  ++.  +.++++.+++........
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g  335 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG  335 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC
Confidence            99998775 445555  59999998887544433334456689999999888773  333  666677666543332233


Q ss_pred             cceEEeeec-CCCeEEEEeCCC---cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC---C
Q 019326          212 KRILCAAPG-ENGVLFTGGEDR---SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD---G  284 (343)
Q Consensus       212 ~~i~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d---g  284 (343)
                      .......|+ +++.++..+.++   .|.+||+.+++.. .+.  +........|+|++.         +|+..+.+   +
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~---------~i~~~s~~~g~~  403 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGS---------MVLYATREGGRG  403 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCC---------EEEEEEecCCce
Confidence            334456777 456666554332   5999999877654 444  322345567877776         77666553   3


Q ss_pred             cEEEEeccC
Q 019326          285 VICVWDVRM  293 (343)
Q Consensus       285 ~i~vwd~~~  293 (343)
                      .|.++++..
T Consensus       404 ~L~~~~~~g  412 (433)
T PRK04922        404 VLAAVSTDG  412 (433)
T ss_pred             EEEEEECCC
Confidence            577777754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.62  E-value=6.7e-14  Score=109.49  Aligned_cols=252  Identities=19%  Similarity=0.324  Sum_probs=188.3

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEc-CCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDL-STSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      +...+..++||.+.|+....-  .+-+++.+.|.++|+|-- +.++.-..+......+++++.+.+..     ..|+.|-
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-----~~L~vg~   87 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-----RRLYVGQ   87 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-----eEEEEEE
Confidence            345567788999999886665  678999999999999954 44554444543336889999999988     8999999


Q ss_pred             CCCeEEEEEC----CCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCC
Q 019326          108 ADGFVSIFDA----DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       108 ~dg~i~iwd~----~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
                      .+|++.-+.+    +.....+....|...+..+-|+-....+++.+.|..+.-.-.+.+..+...........+.+.-. 
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-  166 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-
Confidence            9999998866    34456667778999999999999889999999998887666666665554444433333333322 


Q ss_pred             CEEEEE-eCCcEEEEEcc--cceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCce-eEEecccccccEE
Q 019326          184 EKFFMV-TEEKVGIHQAE--DAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKV-AYCIEDAHSARVK  257 (343)
Q Consensus       184 ~~~~~~-~~~~i~~~d~~--~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~  257 (343)
                       +.+.+ ..+.+....+.  .-.++.++. |...+.++.|.+ +.++++|..|..+.+||+.-.+- ..++. +|...|.
T Consensus       167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~-gh~~kV~  244 (404)
T KOG1409|consen  167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ-GHNDKVQ  244 (404)
T ss_pred             -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec-cchhhhh
Confidence             44445 56666655443  334455555 889999999985 46899999999999999975543 34455 8999999


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP  299 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  299 (343)
                      .+...+...         .+++++.||.|.+|+.+....+.|
T Consensus       245 ~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etp  277 (404)
T KOG1409|consen  245 ALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETP  277 (404)
T ss_pred             hhhhhhhhe---------eeeeccCCCeEEEEeccceeecCc
Confidence            998887776         899999999999999987644333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=3.1e-13  Score=112.65  Aligned_cols=270  Identities=16%  Similarity=0.130  Sum_probs=188.4

Q ss_pred             CCCCCeEEEEec--Cce-EEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEE-EeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           40 AHLSPITTVAVS--GTA-AASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLA-FYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      .|...-+.|..+  |.+ +|+|..--.|++||+.+..+.  |.-|-.+.+..+. .+.+-     ..++.-..|.+|-+-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~-----SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDY-----SKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccch-----hhheEeecCceeeeh
Confidence            467777888887  665 667788899999999865443  3333234444443 34333     456666677777654


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-eCCc
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                      ..-. . ...++ -...-.+++++.-..-|++++....|+-++++.|+-+..+... ..++++.+++...+++++ .+|.
T Consensus       122 ak~G-~-hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  122 AKYG-R-HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV  198 (703)
T ss_pred             hhcC-e-eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce
Confidence            3322 1 11111 1123355666655555666666778999999999987777666 789999999999999999 7999


Q ss_pred             EEEEEcccceeEEEecC-------C-----cceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEE
Q 019326          194 VGIHQAEDAKLLCELDG-------K-----KRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~-------~-----~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      +..||.+....+..+..       +     ..|+++.|++ +-.+++|+.+|.+.|||+++.+++..-..+...+|..+.
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            99999998877766652       2     2399999986 568999999999999999999988776645567889999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                      |.+.++..       .++|. ....++|||-.+++     +...+.....++-+++-|++-++..+......
T Consensus       279 ~~~~~~q~-------~v~S~-Dk~~~kiWd~~~Gk-----~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  279 WQDTDQQN-------KVVSM-DKRILKIWDECTGK-----PMASIEPTSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             ccccCCCc-------eEEec-chHHhhhcccccCC-----ceeeccccCCcCceeeecCCceEEEecCCCcc
Confidence            98774322       56555 34689999999885     33444444557778877776666655555433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.3e-13  Score=109.66  Aligned_cols=207  Identities=15%  Similarity=0.150  Sum_probs=154.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCC--CeEEEEEcCCCeeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTD--DTIHLYDLSTSSSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~d--g~i~iwd~~~~~~~~   76 (343)
                      .|+++..+|.+.+|........        -.++..+..+ ..+..|.-.   ..++++|+..  ..+.+||+++.+.+.
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw  187 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW  187 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccc--------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence            4788899999999998852110        1222222222 344455444   6788889998  889999999886666


Q ss_pred             EeccCC--------CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeeccccEEEEEEecCCCEEEE
Q 019326           77 AIHHHE--------SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHKKGVNDLAVHHSGKLALT  147 (343)
Q Consensus        77 ~~~~~~--------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~  147 (343)
                      .-+.-.        .-.++++.|.+...   +..|++++.-+.+++||.+. .+++..+..-..+++++...|.++.+++
T Consensus       188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~---~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~  264 (412)
T KOG3881|consen  188 SAKNVPNDRLGLRVPVWITDIRFLEGSP---NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT  264 (412)
T ss_pred             eccCCCCccccceeeeeeccceecCCCC---CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE
Confidence            543321        23467888888721   27899999999999999965 4578888878889999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeEE--EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec
Q 019326          148 VGRDDCLAMVNLVRGRRSFY--HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG  220 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~  220 (343)
                      |..-|.+..+|++.++....  ....+.+..+..+|..++++.+ -|..++|+|+.+.+++...--...++++.+.
T Consensus       265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~  340 (412)
T KOG3881|consen  265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR  340 (412)
T ss_pred             ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence            99999999999999886543  3445788888899988888888 8888999988886666555445555555553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=4.4e-13  Score=102.44  Aligned_cols=136  Identities=13%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             CeEEEEEcCC-CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEE--eeCCCeEEEEECCCcceeeeeeeccccEEEEEE
Q 019326           62 DTIHLYDLST-SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFS--TSADGFVSIFDADPFVLLTSVKVHKKGVNDLAV  138 (343)
Q Consensus        62 g~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~  138 (343)
                      |...+|.++. +.....+.....++|.+++|+|++     +.|++  |..++.|.+||++ ++.+..+.  ...+..+.|
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g-----~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~w  108 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG-----NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISW  108 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCC-----CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEE
Confidence            3455555532 334444544324679999999999     56543  4467899999997 46666553  567889999


Q ss_pred             ecCCCEEEEEeC---CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-e------CCcEEEEEcccceeEEE
Q 019326          139 HHSGKLALTVGR---DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T------EEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       139 ~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~i~~~d~~~~~~~~~  207 (343)
                      +|+|+++++++.   .|.+.+||.++.+.+....+. .+..++|+|+|++++++ .      |+.++||+.. |+.+..
T Consensus       109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            999999999875   467999999988877665554 46789999999999998 3      6778888874 444443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.3e-12  Score=113.64  Aligned_cols=228  Identities=11%  Similarity=-0.018  Sum_probs=150.0

Q ss_pred             eEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC---CCeEEEEEcCCCeeeeEeccCCCCC
Q 019326           11 FIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT---DDTIHLYDLSTSSSLGAIHHHESSS   85 (343)
Q Consensus        11 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~   85 (343)
                      .|.++|...             .....+..|...+.+.+|+  |+.|+..+.   +..|.+||+.+++.. .+..+ ...
T Consensus       183 ~l~~~d~dg-------------~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~  247 (435)
T PRK05137        183 RLAIMDQDG-------------ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGM  247 (435)
T ss_pred             EEEEECCCC-------------CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCc
Confidence            677777654             1223344678899999999  777777653   468999999887653 34444 567


Q ss_pred             eEEEEEeCCCCCCCCceE-EEeeCCCe--EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-C--CeEEEEEc
Q 019326           86 VTSLAFYTPQNLSVPRNL-FSTSADGF--VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-D--DCLAMVNL  159 (343)
Q Consensus        86 v~~l~~~~~~~~~~~~~l-~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--~~i~~wd~  159 (343)
                      +...+|+|++     +.| ++.+.++.  |++||+.+++. ..+..+........|+|+|+.|+..+. +  ..|+++|+
T Consensus       248 ~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        248 TFAPRFSPDG-----RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             ccCcEECCCC-----CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            7889999999     555 46666654  77789887654 445545566778999999998887764 3  36888898


Q ss_pred             cCCceeEEEEcCCcceEEEEeCCCCEEEEE-e-C--CcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeC-C--
Q 019326          160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T-E--EKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGE-D--  231 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~-d--  231 (343)
                      ..++...............|+|+|+.++.. . .  ..+.+||+..+. .+.+.....+....|++ ++.++..+. .  
T Consensus       322 ~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~  400 (435)
T PRK05137        322 DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGS  400 (435)
T ss_pred             CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCC
Confidence            776654443334556668899999999877 2 2  357788875543 34444333466777884 555554333 2  


Q ss_pred             ---CcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          232 ---RSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       232 ---g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                         ..++++|+..+.. ..+.  ....+...+|+|
T Consensus       401 ~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp  432 (435)
T PRK05137        401 GGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSP  432 (435)
T ss_pred             CCcceEEEEECCCCce-EEcc--CCCCccCcccCC
Confidence               3578888875543 4444  233445556654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1e-12  Score=113.72  Aligned_cols=216  Identities=14%  Similarity=0.117  Sum_probs=138.1

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCC---CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCCe
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTD---DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADGF  111 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~  111 (343)
                      +..+...+.+.+|+  |+.|+..+.+   ..|.+||+.+++... +... ...+...+|+|++     +.|+ +.+.+|.
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG-----~~la~~~~~~g~  263 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDG-----RTLAVALSRDGN  263 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCC-----CEEEEEEccCCC
Confidence            34577889999998  7778776543   459999999886543 3333 3556789999999     5554 6677887


Q ss_pred             EEEEE--CCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-CCeEEEEEc--cCCceeEEEEcCCcceEEEEeCCCCEE
Q 019326          112 VSIFD--ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNL--VRGRRSFYHKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       112 i~iwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
                      ..+|.  +.++. ...+..+........|+|||+.|+..+. ++...+|.+  .++................|+|+|+++
T Consensus       264 ~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I  342 (427)
T PRK02889        264 SQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL  342 (427)
T ss_pred             ceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence            66665  44443 4445445555677899999998876654 455566654  444432222222334457899999999


Q ss_pred             EEE-eCC---cEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeC-CC--cEEEEECCCCceeEEecccccccEEE
Q 019326          187 FMV-TEE---KVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGE-DR--SITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       187 ~~~-~~~---~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                      +.. .++   .|.+||+.+++... +..........|+ +++.|+..+. .|  .+.+.+. ++.....+. .+.+.+..
T Consensus       343 a~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~-~~~g~~~~  419 (427)
T PRK02889        343 AYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS-VQGGDVRE  419 (427)
T ss_pred             EEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee-cCCCCCCC
Confidence            877 333   58999998876543 3322334566777 4555555543 33  3556666 355555665 56666677


Q ss_pred             EEEEec
Q 019326          259 IVVLTK  264 (343)
Q Consensus       259 ~~~~~~  264 (343)
                      .+|+|.
T Consensus       420 p~wsp~  425 (427)
T PRK02889        420 PSWGPF  425 (427)
T ss_pred             CccCCC
Confidence            777653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.58  E-value=7.8e-12  Score=107.06  Aligned_cols=252  Identities=14%  Similarity=0.126  Sum_probs=164.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      ++++++.+|.|+.+|..+       ++..     ..... .+.+.+ ....++.++.++.+|.|..||.++++.+..+..
T Consensus       107 ~v~v~~~~g~l~ald~~t-------G~~~-----W~~~~-~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       107 LVFVGTEKGEVIALDAED-------GKEL-----WRAKL-SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             EEEEEcCCCEEEEEECCC-------CcEe-----eeecc-CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            467888899999999876       2221     11111 122222 222367788888899999999999999888765


Q ss_pred             CCCCCeE-----EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-------cEEEEEEec--CCCEEE
Q 019326           81 HESSSVT-----SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-------GVNDLAVHH--SGKLAL  146 (343)
Q Consensus        81 ~~~~~v~-----~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~--~~~~l~  146 (343)
                      . ...+.     +.... +      ..++.+..++.+..+|.++++.+.+......       ....+.-+|  .+..++
T Consensus       174 ~-~~~~~~~~~~sp~~~-~------~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       174 V-TPALTLRGSASPVIA-D------GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             C-CCceeecCCCCCEEE-C------CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            4 22111     11111 2      3677888899999999999887765432110       000011111  245788


Q ss_pred             EEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCc-ceEEeeecCCC
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKK-RILCAAPGENG  223 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~-~i~~~~~~~~~  223 (343)
                      +++.+|.++.+|.++++.......... ....  ..+..++++ .++.+..+|..+++.+.... ... ...+... .++
T Consensus       246 ~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~  321 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGG  321 (377)
T ss_pred             EEEcCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECC
Confidence            888899999999999987766553321 1122  245566666 89999999999998887663 111 1222222 466


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      .+++++.+|.|+++|..+++.+.+++ .+...+..--...++          .|+.++.||.|..|
T Consensus       322 ~l~~~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~~~----------~l~v~~~dG~l~~~  376 (377)
T TIGR03300       322 YLVVGDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVVGD----------GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEECC----------EEEEEeCCceEEEe
Confidence            88899999999999999999999888 555443333223333          68889999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=8.2e-12  Score=105.00  Aligned_cols=186  Identities=13%  Similarity=0.133  Sum_probs=134.0

Q ss_pred             ceE-EEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEE
Q 019326          101 RNL-FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       101 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      +++ ++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+++.+...........+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            344 4566689999999999999999986555555678999999999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEE--eCCcEEEEEcccceeEEEecC--------CcceEEeeecC-CC-eEEEEeCCCcEEEEECCCCceeEE
Q 019326          180 DGSGEKFFMV--TEEKVGIHQAEDAKLLCELDG--------KKRILCAAPGE-NG-VLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       180 ~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~--------~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                      +++|++++++  ..+.+.++|.++.++++.+..        ...+..+..++ .. ++++--+.+.|.+.|....+.+..
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            9999999988  799999999999999998862        23456666554 34 444555568898889877654432


Q ss_pred             ecccccccEEEEEEEecCCCCCCCCCCeEEE-EEcCCCcEEEEeccCcc
Q 019326          248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVA-SASSDGVICVWDVRMAI  295 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~  295 (343)
                      -............|.|++.         +++ +...++.|-++|.++.+
T Consensus       166 ~~i~~g~~~~D~~~dpdgr---------y~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGR---------YFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSS---------EEEEEEGGGTEEEEEETTTTE
T ss_pred             eeecccccccccccCcccc---------eeeecccccceeEEEeeccce
Confidence            2113456677888988876         554 45667789999988764

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=9.8e-13  Score=116.81  Aligned_cols=139  Identities=22%  Similarity=0.268  Sum_probs=119.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee-Ee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG-AI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~~   78 (343)
                      .+++|+.-+.|.+|+....            .....+.||.+.|.++.++  |.++++.+.|.++|+|++++.+... ..
T Consensus       147 ~i~~gsv~~~iivW~~~~d------------n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~  214 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHED------------NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG  214 (967)
T ss_pred             EEEeccccccEEEEecccc------------CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc
Confidence            5788999999999998741            1112677999999999997  9999999999999999999988776 56


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      -+| ...|..+.|.|+       .+++++.|.+.++|+... +.+..+.+|.+ .+..++..++...+++++.|+.+++|
T Consensus       215 fgH-saRvw~~~~~~n-------~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  215 FGH-SARVWACCFLPN-------RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             ccc-cceeEEEEeccc-------eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence            678 999999999986       599999999999997654 45557888865 79999999999999999999999999


Q ss_pred             EccC
Q 019326          158 NLVR  161 (343)
Q Consensus       158 d~~~  161 (343)
                      |+..
T Consensus       286 ~l~~  289 (967)
T KOG0974|consen  286 DLNG  289 (967)
T ss_pred             hhhc
Confidence            9864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.8e-12  Score=109.08  Aligned_cols=210  Identities=11%  Similarity=0.035  Sum_probs=130.2

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCCcceeeeeeeccccEEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADPFVLLTSVKVHKKGVNDLAV  138 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~  138 (343)
                      ..|.++|.+ +.....+..+ ...+.+.+|+|++     +.|+..+.+   ..|.+||+.+++... +....+.+...+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG-----~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~  247 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDG-----TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAW  247 (427)
T ss_pred             cEEEEECCC-CCCceEeccC-CCCcccceEcCCC-----CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            457777764 4444455556 6789999999999     677766543   369999998876543 3334455678999


Q ss_pred             ecCCCEEE-EEeCCCeEEEEE--ccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEc--ccceeEEEecCC
Q 019326          139 HHSGKLAL-TVGRDDCLAMVN--LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQA--EDAKLLCELDGK  211 (343)
Q Consensus       139 ~~~~~~l~-~~~~d~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~--~~~~~~~~~~~~  211 (343)
                      +|+|+.|+ +.+.+|...+|.  +..+................|+|+|+.++..  .++...+|.+  .+++........
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g  327 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG  327 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC
Confidence            99998876 456677766655  4444432222223334567899999988766  3455566654  444432222222


Q ss_pred             cceEEeeec-CCCeEEEEeCCC---cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC-c-
Q 019326          212 KRILCAAPG-ENGVLFTGGEDR---SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG-V-  285 (343)
Q Consensus       212 ~~i~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~-  285 (343)
                      .......|+ ++++++..+.++   .|.+||+.+++.. .+.  .........|+|++.         +|+.++.++ . 
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt--~~~~~~~p~~spdg~---------~l~~~~~~~g~~  395 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT--DTTRDESPSFAPNGR---------YILYATQQGGRS  395 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc--CCCCccCceECCCCC---------EEEEEEecCCCE
Confidence            223345677 567777665543   6999999887643 343  122345677888776         777666543 3 


Q ss_pred             -EEEEec
Q 019326          286 -ICVWDV  291 (343)
Q Consensus       286 -i~vwd~  291 (343)
                       +.+.++
T Consensus       396 ~l~~~~~  402 (427)
T PRK02889        396 VLAAVSS  402 (427)
T ss_pred             EEEEEEC
Confidence             444444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=2.6e-12  Score=98.25  Aligned_cols=154  Identities=12%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             EEEEEeCCCCCCCCceEEEeeC----------CCeEEEEECCC-cceeeeeee-ccccEEEEEEecCCCEEEEE--eCCC
Q 019326           87 TSLAFYTPQNLSVPRNLFSTSA----------DGFVSIFDADP-FVLLTSVKV-HKKGVNDLAVHHSGKLALTV--GRDD  152 (343)
Q Consensus        87 ~~l~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~--~~d~  152 (343)
                      ..+.|++.|     ++|+.-..          -+...+|.++. ...+..+.. ..++|.+++|+|+++.|++.  ..++
T Consensus         9 ~~~~W~~~G-----~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSG-----DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccC-----CEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence            357788887     34433222          13455555522 234445543 34579999999999887654  3567


Q ss_pred             eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe----CCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEE
Q 019326          153 CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT----EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFT  227 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~  227 (343)
                      .|.+||++ ++.+.... ...+..+.|+|+|++++++.    .|.+.+||.++.+.+....+.. ++.++|+| ++++++
T Consensus        84 ~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT  160 (194)
T ss_pred             ccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence            99999996 44444443 46778899999999999982    4679999999999988887665 67899994 678887


Q ss_pred             EeC------CCcEEEEECCCCceeEEec
Q 019326          228 GGE------DRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       228 ~~~------dg~i~i~d~~~~~~~~~~~  249 (343)
                      +..      |+.++||+.. |+.+....
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeEecc
Confidence            764      7889999985 77666544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.5e-13  Score=113.99  Aligned_cols=207  Identities=14%  Similarity=0.180  Sum_probs=148.4

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee-eccccEEEEEEecC--CCEEEEEeC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-VHKKGVNDLAVHHS--GKLALTVGR  150 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~--~~~l~~~~~  150 (343)
                      +..++.+| ++.|++|.|+.+|     .+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-|.  .+.+++|..
T Consensus        42 lE~eL~GH-~GCVN~LeWn~dG-----~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   42 LEAELTGH-TGCVNCLEWNADG-----ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhhhhccc-cceecceeecCCC-----CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence            44678899 9999999999999     899999999999999998878887774 79999999999984  578999999


Q ss_pred             CCeEEEEEccCCcee----------E-EEEcCCcceEEEEeCCC-CEEEEE-eCCcEEEEEcccceeEEEe-------c-
Q 019326          151 DDCLAMVNLVRGRRS----------F-YHKIGKEASLIKFDGSG-EKFFMV-TEEKVGIHQAEDAKLLCEL-------D-  209 (343)
Q Consensus       151 d~~i~~wd~~~~~~~----------~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~-------~-  209 (343)
                      |..|+++|+...+.-          . ..-+...+..++..|++ ..+.++ .||.++.||++.......-       . 
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence            999999999853211          1 11123556778888888 556666 9999999999874321110       0 


Q ss_pred             ---CCcceEEeeecC--CCeEEEEeCCCcEEEEECCC--------Cc----------eeEEeccccc--------c---c
Q 019326          210 ---GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNS--------GK----------VAYCIEDAHS--------A---R  255 (343)
Q Consensus       210 ---~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~~~~h~--------~---~  255 (343)
                         .--...|+.+++  ..+|++|+.|-..++||.+.        +.          ++.-+..+|.        .   .
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~  275 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC  275 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence               123456677764  56999999999999999432        11          1222222332        1   2


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++-+.|+|++.+        +|++-+.+ .|+++|+..++
T Consensus       276 ~t~vtfnpNGtE--------lLvs~~gE-hVYlfdvn~~~  306 (758)
T KOG1310|consen  276 CTYVTFNPNGTE--------LLVSWGGE-HVYLFDVNEDK  306 (758)
T ss_pred             eEEEEECCCCcE--------EEEeeCCe-EEEEEeecCCC
Confidence            455677777652        55555544 79999998764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=7.5e-13  Score=117.52  Aligned_cols=188  Identities=16%  Similarity=0.173  Sum_probs=149.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEE---EeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLA---FYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV  128 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  128 (343)
                      ...++.+..+..+.+||...+.....+...+.....+..   ++++.     -++++|+.-+.|.+|+....+.-..+.+
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-----~~i~~gsv~~~iivW~~~~dn~p~~l~G  173 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-----LYIASGSVFGEIIVWKPHEDNKPIRLKG  173 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-----EEEEeccccccEEEEeccccCCcceecc
Confidence            456888888899999999988877777655233333332   33443     6899999999999999964343346889


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEe
Q 019326          129 HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  208 (343)
                      |.+.|.++.++-+|+++++.+.|.++++|++.+.+...                                      ..-+
T Consensus       174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------------~~~f  215 (967)
T KOG0974|consen  174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------------------CTGF  215 (967)
T ss_pred             cCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------------------cccc
Confidence            99999999999999999999999999999999877432                                      1233


Q ss_pred             cCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccc-cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          209 DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH-SARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       209 ~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      .|...+..+++.+. .+++++.|-+.++|+.. ++.+..+. .| ...|..++..+...         .++|++.||.++
T Consensus       216 gHsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~---------~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  216 GHSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVI---------IKVTGGNDSTLK  283 (967)
T ss_pred             cccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhh-hhhhcceeEEEEcCCce---------EEEeeccCcchh
Confidence            57777788888766 99999999999999766 66666777 55 46799999988876         999999999999


Q ss_pred             EEeccCc
Q 019326          288 VWDVRMA  294 (343)
Q Consensus       288 vwd~~~~  294 (343)
                      +|++...
T Consensus       284 ~~~l~~r  290 (967)
T KOG0974|consen  284 LWDLNGR  290 (967)
T ss_pred             hhhhhcc
Confidence            9999765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.51  E-value=2.2e-11  Score=105.94  Aligned_cols=201  Identities=16%  Similarity=0.096  Sum_probs=130.7

Q ss_pred             cCCCCCeEEEEec--CceEEEeeCC---CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCC--
Q 019326           39 PAHLSPITTVAVS--GTAAASGGTD---DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADG--  110 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg--  110 (343)
                      ..+...+.+.+|+  +++|+.+..+   ..|++||+.+++.... ..+ ...+.+++|+|++     +.|+ +.+.++  
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~-~~~~~~~~~spDg-----~~l~~~~~~~~~~  258 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASF-PGMNGAPAFSPDG-----SKLAVSLSKDGNP  258 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecC-CCCccceEECCCC-----CEEEEEECCCCCc
Confidence            3466678888998  7888876643   4799999998765433 334 4567779999998     5554 555544  


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC-C--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-D--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      .|++||+.+++. ..+..+........|+|+++.|+..+.. +  .|+++|+.+++...............|+|++++++
T Consensus       259 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       259 DIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             cEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence            588899887654 3333344455567899999988766543 2  68888888776544443445567789999999988


Q ss_pred             EE-eCC---cEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCC---cEEEEECCCCceeEEec
Q 019326          188 MV-TEE---KVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDR---SITAWDTNSGKVAYCIE  249 (343)
Q Consensus       188 ~~-~~~---~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~  249 (343)
                      .. .++   .|.+||+.++.. ..+..........|+ +++.|+..+.++   .+++.+.. +.....+.
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence            88 443   688888887543 333322223344566 455665555443   35555543 45555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.50  E-value=3.9e-12  Score=97.74  Aligned_cols=189  Identities=18%  Similarity=0.197  Sum_probs=133.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee--eeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS--LGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~   78 (343)
                      |+-+-..|.|.+|.....      .+...+.++...+-......++.|+  +..++++..+|.+.+-+......  ++.+
T Consensus        88 l~~a~a~G~i~~~r~~~~------~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w  161 (339)
T KOG0280|consen   88 LLDAHARGQIQLYRNDED------ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW  161 (339)
T ss_pred             eeeccccceEEEEeeccc------eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc
Confidence            455556777777766541      1111222222111111123345565  77899999999998666555544  3478


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-Ccceeee-eeeccccEEEEEEecC-CCEEEEEeCCCeEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTS-VKVHKKGVNDLAVHHS-GKLALTVGRDDCLA  155 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~  155 (343)
                      +.| .-+.+...|+...    |+.+.+|+.|+.+..||++ .++.+.. .+-|...|.+|.-+|. ..++++|+.|..|+
T Consensus       162 k~H-e~E~Wta~f~~~~----pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~  236 (339)
T KOG0280|consen  162 KVH-EFEAWTAKFSDKE----PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIR  236 (339)
T ss_pred             ccc-ceeeeeeecccCC----CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccccee
Confidence            889 8999999998776    5899999999999999998 4445544 5678899999988874 68999999999999


Q ss_pred             EEEcc-CCceeEEEEcCCcceEEEEeCCCC--EEEEEeCCcEEEEEcccc
Q 019326          156 MVNLV-RGRRSFYHKIGKEASLIKFDGSGE--KFFMVTEEKVGIHQAEDA  202 (343)
Q Consensus       156 ~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~d~~~~  202 (343)
                      +||.+ -++++......+.|..+..+|.-.  .++++.-+..++.+.+..
T Consensus       237 ~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  237 VLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK  286 (339)
T ss_pred             eeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence            99999 567777777788899999998544  444445555666666554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.50  E-value=2.3e-11  Score=102.04  Aligned_cols=189  Identities=12%  Similarity=0.075  Sum_probs=148.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccC--CCCCeEEEEEeCC--CC-------------CCCCceEEEeeCCCeEEE
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHH--ESSSVTSLAFYTP--QN-------------LSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~--~~-------------~~~~~~l~s~~~dg~i~i  114 (343)
                      ..++|....||.+|+|+..+++....|...  -.+...+..|.-.  ..             ......++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            468999999999999999999888777532  1344455555311  00             022357888899999999


Q ss_pred             EECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEEeC
Q 019326          115 FDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMVTE  191 (343)
Q Consensus       115 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  191 (343)
                      |+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+........ ..+..++++|++..++++ .
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a-s  163 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA-S  163 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec-c
Confidence            9999999888776  58899999999999999999999999999999988877766554 668889999998877764 5


Q ss_pred             CcEEEEEcccceeEEEec-CCcceEEeeec-C-----CCeEEE-EeCCCcEEEEECCC
Q 019326          192 EKVGIHQAEDAKLLCELD-GKKRILCAAPG-E-----NGVLFT-GGEDRSITAWDTNS  241 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~-----~~~l~~-~~~dg~i~i~d~~~  241 (343)
                      +.|++||+++.+.+..+. |.++|.++.|. .     +.++++ ...+..+.+|-...
T Consensus       164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            789999999999999999 78899999986 2     345554 44566677886654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=3.4e-11  Score=104.75  Aligned_cols=211  Identities=9%  Similarity=0.036  Sum_probs=137.8

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCCcceeeeeeeccccEEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADPFVLLTSVKVHKKGVNDLAV  138 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~  138 (343)
                      ..|.++|..... ...+..+ ...+....|+|++     ++|+.+..+   ..|++||+.+++... +..+.+.+.+++|
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~-~~~~~~p~~Spdg-----~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~  241 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRS-REPILSPAWSPDG-----QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF  241 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecC-CCceecccCCCCC-----CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            358888876443 4445555 5678899999999     677776643   479999998875433 3335566777999


Q ss_pred             ecCCCEEEE-EeCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CC--cEEEEEcccceeEEEecCC
Q 019326          139 HHSGKLALT-VGRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EE--KVGIHQAEDAKLLCELDGK  211 (343)
Q Consensus       139 ~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~  211 (343)
                      +|+++.|+. .+.++  .|++||+.+++...............|+|+++.++...  .+  .|.++++.+++......+.
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~  321 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG  321 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC
Confidence            999987764 44443  58899998876544433333445678999999887662  22  5777888776654433345


Q ss_pred             cceEEeeec-CCCeEEEEeCCC---cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC---
Q 019326          212 KRILCAAPG-ENGVLFTGGEDR---SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG---  284 (343)
Q Consensus       212 ~~i~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg---  284 (343)
                      .......|+ ++++++.++.++   .|.+||+.++.. ..+. .. .......|+|++.         +|+..+.++   
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~-~~~~~p~~spdg~---------~l~~~~~~~~~~  389 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT-DT-GLDESPSFAPNGR---------MILYATTRGGRG  389 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc-CC-CCCCCceECCCCC---------EEEEEEeCCCcE
Confidence            556667787 466777776665   789999887543 3333 12 2234456777765         777766654   


Q ss_pred             cEEEEecc
Q 019326          285 VICVWDVR  292 (343)
Q Consensus       285 ~i~vwd~~  292 (343)
                      .+.+.+..
T Consensus       390 ~l~~~~~~  397 (417)
T TIGR02800       390 VLGLVSTD  397 (417)
T ss_pred             EEEEEECC
Confidence            34444543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=7.5e-10  Score=93.26  Aligned_cols=258  Identities=15%  Similarity=0.161  Sum_probs=165.5

Q ss_pred             EEEeeCC----CeEEEEEc--CCCeee--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC----CCeEEEEECCCc--
Q 019326           55 AASGGTD----DTIHLYDL--STSSSL--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----DGFVSIFDADPF--  120 (343)
Q Consensus        55 l~s~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--  120 (343)
                      ++.|+..    +.|.+|++  ++++..  ..+..  ......|+++|++     ++|.+...    ++.|..|++...  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~-----~~LY~~~e~~~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDG-----RRLYVVNEGSGDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTS-----SEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCC-----CEEEEEEccccCCCCEEEEEECCCcc
Confidence            4555555    68999988  444432  23222  3567779999998     78887776    579999988653  


Q ss_pred             c--eeeeeeeccccEEEEEEecCCCEEEEEe-CCCeEEEEEccCC-ceeEE---EE-----------cCCcceEEEEeCC
Q 019326          121 V--LLTSVKVHKKGVNDLAVHHSGKLALTVG-RDDCLAMVNLVRG-RRSFY---HK-----------IGKEASLIKFDGS  182 (343)
Q Consensus       121 ~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~~-~~~~~---~~-----------~~~~~~~~~~~~~  182 (343)
                      +  .+............++++|++++|+++. .+|.+.++++... .....   ..           ....+.++.++|+
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence            2  3333433345667899999999988887 4899999999874 32221   11           1244678999999


Q ss_pred             CCEEEEE--eCCcEEEEEcccce--eEE----EecCCcceEEeeecC-CCeEE-EEeCCCcEEEEECC--CCc--eeEEe
Q 019326          183 GEKFFMV--TEEKVGIHQAEDAK--LLC----ELDGKKRILCAAPGE-NGVLF-TGGEDRSITAWDTN--SGK--VAYCI  248 (343)
Q Consensus       183 ~~~~~~~--~~~~i~~~d~~~~~--~~~----~~~~~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~--~~~--~~~~~  248 (343)
                      ++++++.  ....|.+|++....  +..    .+........+.|++ +++++ +.-.++.|.+|++.  ++.  .+..+
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            9999888  67889999997654  322    233556688899985 45554 45568889999988  442  22222


Q ss_pred             cc---cc--cccEEEEEEEecCCCCCCCCCCeEEEEE-cCCCcEEEEeccCccccCCCccccccc-ccceeEEEcCCCCc
Q 019326          249 ED---AH--SARVKGIVVLTKNDGGSTAENPYLVASA-SSDGVICVWDVRMAIKEKPLPLAEAKT-NSRLTCLAGSSTKS  321 (343)
Q Consensus       249 ~~---~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~  321 (343)
                      ..   ..  ......|+++|+++         +|+.+ -.++.|.+|+++... .....+..... +.....++++++++
T Consensus       235 ~~~~~~~~~~~~~~~i~ispdg~---------~lyvsnr~~~sI~vf~~d~~~-g~l~~~~~~~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  235 STLPEGFTGENAPAEIAISPDGR---------FLYVSNRGSNSISVFDLDPAT-GTLTLVQTVPTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             ESCETTSCSSSSEEEEEE-TTSS---------EEEEEECTTTEEEEEEECTTT-TTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred             eeccccccccCCceeEEEecCCC---------EEEEEeccCCEEEEEEEecCC-CceEEEEEEeCCCCCccEEEEeCCCC
Confidence            21   11  12578899998887         65554 467789999994321 01112233333 33488999999999


Q ss_pred             eeccccCC
Q 019326          322 FKRPQIGD  329 (343)
Q Consensus       322 ~~~~~~~~  329 (343)
                      +++....+
T Consensus       305 ~l~Va~~~  312 (345)
T PF10282_consen  305 YLYVANQD  312 (345)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            88766543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=4.2e-09  Score=83.90  Aligned_cols=268  Identities=16%  Similarity=0.180  Sum_probs=176.8

Q ss_pred             eeEEeccC----CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC---CeEEEEEcCC-
Q 019326            2 SLIAGSYE----KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD---DTIHLYDLST-   71 (343)
Q Consensus         2 ~l~~g~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~-   71 (343)
                      .+.+|+..    ..|++|++.+..        .+...... -.+.+.++-|+|+  .+.|+++-.+   |.|-.|.++. 
T Consensus         4 ~~YiGtyT~~~s~gI~v~~ld~~~--------g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~   74 (346)
T COG2706           4 TVYIGTYTKRESQGIYVFNLDTKT--------GELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD   74 (346)
T ss_pred             EEEEeeecccCCCceEEEEEeCcc--------cccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC
Confidence            34556654    689999998521        11222222 2467788999999  5678887654   6787777764 


Q ss_pred             -Ceee--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCC-cceee--eeeecccc----------EE
Q 019326           72 -SSSL--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADP-FVLLT--SVKVHKKG----------VN  134 (343)
Q Consensus        72 -~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~  134 (343)
                       |++.  ...... ..+-..+++++++     ++++++.. .|.|.++-++. +.+..  ....|.+.          +.
T Consensus        75 ~G~Lt~ln~~~~~-g~~p~yvsvd~~g-----~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H  148 (346)
T COG2706          75 DGRLTFLNRQTLP-GSPPCYVSVDEDG-----RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH  148 (346)
T ss_pred             CCeEEEeeccccC-CCCCeEEEECCCC-----CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc
Confidence             4432  222222 3344789999998     78888876 57899998854 33221  12235444          78


Q ss_pred             EEEEecCCCEEEEEeC-CCeEEEEEccCCceeE----EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccc-eeEE
Q 019326          135 DLAVHHSGKLALTVGR-DDCLAMVNLVRGRRSF----YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDA-KLLC  206 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~-~~~~  206 (343)
                      ...+.|++++|++... -..|.+|++..++...    ....+.....+.|+|++++..+.  -+++|.+|..... ..+.
T Consensus       149 ~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         149 SANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            8899999999988764 3469999999776432    22334567889999999998888  7999999988773 2222


Q ss_pred             Eec----------CCcceEEeeec-CCCeEEEEeC-CCcEEEEECCCC-cee---EEecccccccEEEEEEEecCCCCCC
Q 019326          207 ELD----------GKKRILCAAPG-ENGVLFTGGE-DRSITAWDTNSG-KVA---YCIEDAHSARVKGIVVLTKNDGGST  270 (343)
Q Consensus       207 ~~~----------~~~~i~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~-~~~---~~~~~~h~~~v~~~~~~~~~~~~~~  270 (343)
                      .++          .......+..+ ++++|+++.. ...|.+|.+... ..+   .... .+....+...+++.++    
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~----  303 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGR----  303 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCC----
Confidence            222          33445566666 5677777654 346888876543 222   2222 4555578888988887    


Q ss_pred             CCCCeEEEEEcCC-CcEEEEeccCc
Q 019326          271 AENPYLVASASSD-GVICVWDVRMA  294 (343)
Q Consensus       271 ~~~~~~l~s~~~d-g~i~vwd~~~~  294 (343)
                           +|+++..| ..|.+|.++..
T Consensus       304 -----~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         304 -----FLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             -----EEEEEccCCCcEEEEEEcCC
Confidence                 88888765 57999988653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=6.9e-13  Score=108.46  Aligned_cols=253  Identities=15%  Similarity=0.086  Sum_probs=178.2

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee-eccccEEEEEEecC--CCEEEEEeC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-VHKKGVNDLAVHHS--GKLALTVGR  150 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~--~~~l~~~~~  150 (343)
                      ....+..| .+.|..+.|+..+     ..|++|+.|..|.+||...++....+. +|...|..-.|-|.  ...+++++.
T Consensus       134 l~~kL~~H-~GcVntV~FN~~G-----d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  134 LQKKLNKH-KGCVNTVHFNQRG-----DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhcccCC-CCccceeeecccC-----ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence            34566778 8999999999999     899999999999999998877766664 68888888889885  378999999


Q ss_pred             CCeEEEEEccCCce----eEEEEcCCcceEEEEeCCCCE-EEEE-eCCcEEEEEcccceeEEEec----CCc---ceEEe
Q 019326          151 DDCLAMVNLVRGRR----SFYHKIGKEASLIKFDGSGEK-FFMV-TEEKVGIHQAEDAKLLCELD----GKK---RILCA  217 (343)
Q Consensus       151 d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~d~~~~~~~~~~~----~~~---~i~~~  217 (343)
                      ||.+++=.+.....    .....+.+++..++..|+..+ |.++ .|+.+.-+|++.......+.    ...   ....+
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            99999877654332    234456688999999997664 4444 89999999998776544443    222   45566


Q ss_pred             eecC--CCeEEEEeCCCcEEEEECCCCce------eEEecc-----cccccEEEEEEEecCCCC----------------
Q 019326          218 APGE--NGVLFTGGEDRSITAWDTNSGKV------AYCIED-----AHSARVKGIVVLTKNDGG----------------  268 (343)
Q Consensus       218 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~-----~h~~~v~~~~~~~~~~~~----------------  268 (343)
                      +..+  .+.+++|+.|..+++||.+.-..      +..+..     .....|++++++.++...                
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            6653  45899999999999999874221      122210     122346666666332100                


Q ss_pred             ---------------------------------CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEE
Q 019326          269 ---------------------------------STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLA  315 (343)
Q Consensus       269 ---------------------------------~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~  315 (343)
                                                       ++.|...++++||.-|.|.||+-.+++....   ...... -|+||.
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~---MegDr~-VVNCLE  443 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF---MEGDRH-VVNCLE  443 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH---hhcccc-eEeccC
Confidence                                             3346667999999999999999998753322   222222 689999


Q ss_pred             cCCCCceeccccCCCCCCCcc
Q 019326          316 GSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       316 ~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      -+|--.+++...-+-.+|.+-
T Consensus       444 pHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             CCCCCchhhccCCccceeeec
Confidence            888877777666665555443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=1.1e-09  Score=90.35  Aligned_cols=249  Identities=9%  Similarity=0.053  Sum_probs=157.9

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe-e---------CCCeEEEEECCCcceeeeeeeccc
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST-S---------ADGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~-~---------~dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      ++|.+.|..+++.+..+... ..+- .+ ++|++     +.|+.+ +         .+..|.+||..+.+.+.++.....
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G-~~P~-~~-~spDg-----~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG-FLPN-PV-VASDG-----SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc-CCCc-ee-ECCCC-----CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence            88999999999999988765 3332 34 99998     455544 4         578999999999999988874222


Q ss_pred             -------cEEEEEEecCCCEEEEEe-C-CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEccc-
Q 019326          132 -------GVNDLAVHHSGKLALTVG-R-DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAED-  201 (343)
Q Consensus       132 -------~v~~i~~~~~~~~l~~~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-  201 (343)
                             ....++++|+|++|++.. . +..|.+.|+.+++.+.....+.....+..+. ...++.+.|+......+.+ 
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~~~~~Dg~~~~v~~d~~  177 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFFMHCRDGSLAKVGYGTK  177 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccEEEeecCceEEEEecCC
Confidence                   234789999999998776 3 6899999999999998888876544444433 3333444444444432221 


Q ss_pred             cee-EEE---ecC------CcceEEeeecCCCeEEEEeCCCcEEEEECCCC-----ceeEEeccc------ccccEEEEE
Q 019326          202 AKL-LCE---LDG------KKRILCAAPGENGVLFTGGEDRSITAWDTNSG-----KVAYCIEDA------HSARVKGIV  260 (343)
Q Consensus       202 ~~~-~~~---~~~------~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~------h~~~v~~~~  260 (343)
                      ++. ...   +..      ..+  .....++.+++.... |.|.+.|+...     +....+..+      ....+.-++
T Consensus       178 g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       178 GNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             CceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            111 111   111      112  111214667766666 99999996433     333322211      223344488


Q ss_pred             EEecCCCCCCCCCCeEEEEEc----------CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc-eecccc-C
Q 019326          261 VLTKNDGGSTAENPYLVASAS----------SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS-FKRPQI-G  328 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~~~~~~-~  328 (343)
                      +++++.         .++...          ..+.|.++|..+.+     .+..+..+..+..+++++|++ ++.... .
T Consensus       255 ~~~dg~---------~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~  320 (352)
T TIGR02658       255 YHRARD---------RIYLLADQRAKWTHKTASRFLFVVDAKTGK-----RLRKIELGHEIDSINVSQDAKPLLYALSTG  320 (352)
T ss_pred             EcCCCC---------EEEEEecCCccccccCCCCEEEEEECCCCe-----EEEEEeCCCceeeEEECCCCCeEEEEeCCC
Confidence            888876         555532          12579999998875     334455566899999999999 655444 3


Q ss_pred             CCCCCCcc
Q 019326          329 DSAPKGEE  336 (343)
Q Consensus       329 ~~~~~~~~  336 (343)
                      .+.+...+
T Consensus       321 s~~VsViD  328 (352)
T TIGR02658       321 DKTLYIFD  328 (352)
T ss_pred             CCcEEEEE
Confidence            44344333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=1.9e-11  Score=95.99  Aligned_cols=238  Identities=14%  Similarity=0.179  Sum_probs=163.2

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe-----eeeEeccCC-----------CCCeEEEEEeCCCCCCCCceE
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS-----SLGAIHHHE-----------SSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~-----------~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      ..-|.++.|+  |++||||..+|.|.++.-....     ....++.|+           ...|..+.|.++++.   ..+
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~---a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL---AEF  101 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc---cEE
Confidence            4568899998  9999999999999999654322     233444442           246889999988743   677


Q ss_pred             EEeeCCCeEEEEECCCcce-----------------------------------eeee-eeccccEEEEEEecCCCEEEE
Q 019326          104 FSTSADGFVSIFDADPFVL-----------------------------------LTSV-KVHKKGVNDLAVHHSGKLALT  147 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~i~~~~~~~~l~~  147 (343)
                      +..+.|.+|++|.+.....                                   .+.+ ..|.--|++|.++.|+..+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            8888999999998742110                                   0111 146778999999999888877


Q ss_pred             EeCCCeEEEEEccCCceeEEE-Ec--------CCcceEEEEeCCC-CEEEEE-eCCcEEEEEcccceeEEEe----c---
Q 019326          148 VGRDDCLAMVNLVRGRRSFYH-KI--------GKEASLIKFDGSG-EKFFMV-TEEKVGIHQAEDAKLLCEL----D---  209 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~~-~~--------~~~~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~----~---  209 (343)
                      + .|=.|.+|+++-....+.. ..        ..-|++..|+|.. +.++-. +.|.|++.|++...+.-..    .   
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            5 4678999998754432222 11        2346778899854 444444 8999999999854322111    1   


Q ss_pred             C----------CcceEEeeecC-CCeEEEEeCCCcEEEEEC-CCCceeEEecccccc------------cE---EEEEEE
Q 019326          210 G----------KKRILCAAPGE-NGVLFTGGEDRSITAWDT-NSGKVAYCIEDAHSA------------RV---KGIVVL  262 (343)
Q Consensus       210 ~----------~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~h~~------------~v---~~~~~~  262 (343)
                      .          -..|..+.|++ |+++++-+ --+|++||+ ...+++.+++ -|..            .|   ..++|+
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEEEEc
Confidence            1          13477888885 56776643 368999999 4566777766 5532            12   345666


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .++.         +++||+....++++++..+
T Consensus       339 g~~~---------~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  339 GNDS---------YVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CCcc---------eEecccccceEEEecCCCC
Confidence            6655         9999999999999997665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=2.3e-09  Score=88.42  Aligned_cols=259  Identities=14%  Similarity=0.095  Sum_probs=158.3

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeC----------CCeEEEEEcCCCeeeeEec
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT----------DDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~   79 (343)
                      +.|.+.|..+            .+.+..+..-..+-.-++-+++.|+++..          +..|.+||..+.+.+.++.
T Consensus        27 ~~v~ViD~~~------------~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~   94 (352)
T TIGR02658        27 TQVYTIDGEA------------GRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE   94 (352)
T ss_pred             ceEEEEECCC------------CEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence            7889999876            22222222211221113333666666554          7899999999999998887


Q ss_pred             cCCC------CCeEEEEEeCCCCCCCCceEEEee-C-CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           80 HHES------SSVTSLAFYTPQNLSVPRNLFSTS-A-DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        80 ~~~~------~~v~~l~~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      ....      .....++++|++     ++|+... . +..|.+.|+.+++.+.++.... ...-...+++..+  +-+.|
T Consensus        95 ~p~~p~~~~~~~~~~~~ls~dg-----k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~D  166 (352)
T TIGR02658        95 LPEGPRFLVGTYPWMTSLTPDN-----KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRD  166 (352)
T ss_pred             cCCCchhhccCccceEEECCCC-----CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeec
Confidence            5311      223478999999     7777665 3 6899999999999988887522 2222222222222  22345


Q ss_pred             CeEEEEEccCCceeEEE--Ec--C--Ccc-eEEEEeC-CCCEEEEEeCCcEEEEEccc-----ceeEEEec--------C
Q 019326          152 DCLAMVNLVRGRRSFYH--KI--G--KEA-SLIKFDG-SGEKFFMVTEEKVGIHQAED-----AKLLCELD--------G  210 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~--~~--~--~~~-~~~~~~~-~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~--------~  210 (343)
                      |......+.+.......  ..  .  ..+ ..-.+.+ ++.++++...|.+.+.|+..     .+.+..+.        .
T Consensus       167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccC
Confidence            55444433322111111  11  1  000 0003455 88999888669999999543     33333322        1


Q ss_pred             CcceEEeeec-CCCeEEEEe----------CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE-
Q 019326          211 KKRILCAAPG-ENGVLFTGG----------EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA-  278 (343)
Q Consensus       211 ~~~i~~~~~~-~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-  278 (343)
                      +..+.-++++ +++.++...          ..+.|.++|..+++.+..+.  -...+..+++++++..        +|+ 
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp--------~lyv  316 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKP--------LLYA  316 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCe--------EEEE
Confidence            2333447777 556666532          22579999999999999998  4568999999998752        444 


Q ss_pred             EEcCCCcEEEEeccCccccC
Q 019326          279 SASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       279 s~~~dg~i~vwd~~~~~~~~  298 (343)
                      +...++.|.+.|+.+++...
T Consensus       317 tn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       317 LSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             eCCCCCcEEEEECcCCeEEe
Confidence            44468899999999875433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.3e-10  Score=101.26  Aligned_cols=215  Identities=16%  Similarity=0.128  Sum_probs=135.9

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCC---CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCC-
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTD---DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADG-  110 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg-  110 (343)
                      +..+...+...+|+  |+.|+..+.+   ..|.+||+.+++... +... .+.+....|+|++     +.|+ +...+| 
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~-~g~~~~~~~SpDG-----~~la~~~~~~g~  266 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNF-EGLNGAPAWSPDG-----SKLAFVLSKDGN  266 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCC-CCCcCCeEECCCC-----CEEEEEEccCCC
Confidence            33567788999998  7777765543   368999998886543 3223 3455678999999     5555 555555 


Q ss_pred             -eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-C--CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEE
Q 019326          111 -FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-D--DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       111 -~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (343)
                       .|++||+.+++.. .+..+........|+|+++.++..+. +  ..|+++|+.+++...............|+|+++.+
T Consensus       267 ~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        267 PEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             ceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence             6888899886543 34445555667889999988776654 3  35788888777644333222334457899999999


Q ss_pred             EEE-e-CC--cEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeC-C--CcEEEEECCCCceeEEecccccccEEE
Q 019326          187 FMV-T-EE--KVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGE-D--RSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       187 ~~~-~-~~--~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                      +.. . ++  .|.++|+.+++. +.+..........|+ +++.++..+. +  ..|.+++.. +.....+. .+.+.+..
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~-~~~g~~~~  422 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP-TAQGEVRE  422 (430)
T ss_pred             EEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc-CCCCCcCC
Confidence            887 2 33  477889887754 333322222234566 4555554443 3  346677775 44444555 44455666


Q ss_pred             EEEEe
Q 019326          259 IVVLT  263 (343)
Q Consensus       259 ~~~~~  263 (343)
                      .+|+|
T Consensus       423 p~ws~  427 (430)
T PRK00178        423 PSWSP  427 (430)
T ss_pred             CccCC
Confidence            66665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=2.1e-10  Score=100.04  Aligned_cols=211  Identities=10%  Similarity=0.040  Sum_probs=131.2

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      .|.++|.+.+.. ..+..+ ...+....|+|++     +.|+..+.+   ..|.+||+.+++... +....+.+....|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~-~~~~~~p~wSpDG-----~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQS-REPILSPRWSPDG-----KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCCc-eEEecC-CCceeeeeECCCC-----CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEEC
Confidence            477788875543 445445 5788999999999     677665543   369999998876433 33233445578999


Q ss_pred             cCCCEEEE-EeCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eC--CcEEEEEcccceeEEEecCCc
Q 019326          140 HSGKLALT-VGRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TE--EKVGIHQAEDAKLLCELDGKK  212 (343)
Q Consensus       140 ~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~i~~~d~~~~~~~~~~~~~~  212 (343)
                      |+|+.|+. ...+|  .|+++|+.+++...............|+|+++.++..  .+  ..|.++++.+++..+......
T Consensus       252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~  331 (430)
T PRK00178        252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN  331 (430)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence            99988764 44444  6888899887754443334445568899999988766  23  357777877766433222222


Q ss_pred             ceEEeeec-CCCeEEEEeC-CC--cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC-C--c
Q 019326          213 RILCAAPG-ENGVLFTGGE-DR--SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD-G--V  285 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~  285 (343)
                      ......|+ +++.++..+. ++  .|.++|+.+++. ..+.  +........|+|++.         +++..+.+ |  .
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt--~~~~~~~p~~spdg~---------~i~~~~~~~g~~~  399 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT--DTSLDESPSVAPNGT---------MLIYATRQQGRGV  399 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc--CCCCCCCceECCCCC---------EEEEEEecCCceE
Confidence            23345566 4566655543 33  588899987764 3333  111222446777765         66655543 3  4


Q ss_pred             EEEEeccC
Q 019326          286 ICVWDVRM  293 (343)
Q Consensus       286 i~vwd~~~  293 (343)
                      |.++++..
T Consensus       400 l~~~~~~g  407 (430)
T PRK00178        400 LMLVSING  407 (430)
T ss_pred             EEEEECCC
Confidence            56666643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.44  E-value=2.6e-11  Score=95.27  Aligned_cols=228  Identities=12%  Similarity=0.142  Sum_probs=156.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC------------CCeEEEEec----CceEEEeeCCCeEE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL------------SPITTVAVS----GTAAASGGTDDTIH   65 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~----~~~l~s~~~dg~i~   65 (343)
                      .|++|..+|.|.+|.-...       ...++.-...++.|.            ..|+.+.|.    ...++..+.|.+|+
T Consensus        39 ~LatGdkgGRVv~f~r~~~-------~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiK  111 (433)
T KOG1354|consen   39 RLATGDKGGRVVLFEREKL-------YKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIK  111 (433)
T ss_pred             eEeecCCCCeEEEeecccc-------cccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCccee
Confidence            5899999999999976541       111333344444443            457888887    45677788899999


Q ss_pred             EEEcCCCe-----------------------------------eeeEe-ccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           66 LYDLSTSS-----------------------------------SLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        66 iwd~~~~~-----------------------------------~~~~~-~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +|.+....                                   +.+.+ ..| ...|+++.++.+.     +.++++ .|
T Consensus       112 lWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH-tyhiNSIS~NsD~-----Et~lSA-Dd  184 (433)
T KOG1354|consen  112 LWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH-TYHINSISVNSDK-----ETFLSA-DD  184 (433)
T ss_pred             eeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc-eeEeeeeeecCcc-----ceEeec-cc
Confidence            99875321                                   11122 235 7789999999988     566664 56


Q ss_pred             CeEEEEECCCcc---eeeeeeec-----cccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCce------eEEEE-----
Q 019326          110 GFVSIFDADPFV---LLTSVKVH-----KKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRR------SFYHK-----  169 (343)
Q Consensus       110 g~i~iwd~~~~~---~~~~~~~~-----~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~------~~~~~-----  169 (343)
                      -.|.+|+++--.   .+-.++.+     ..-|++..|+|.. +.++-.+..|+|++.|++....      +....     
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence            789999985322   12222333     2468888999964 6778888899999999985421      11111     


Q ss_pred             ------cCCcceEEEEeCCCCEEEEEeCCcEEEEEc-ccceeEEEec-CC------------cc---eEEeeec-CCCeE
Q 019326          170 ------IGKEASLIKFDGSGEKFFMVTEEKVGIHQA-EDAKLLCELD-GK------------KR---ILCAAPG-ENGVL  225 (343)
Q Consensus       170 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~~~-~~------------~~---i~~~~~~-~~~~l  225 (343)
                            .-..|+.+.|+++|+++++-.--++++||+ ...+++.+++ |.            ..   -..++|+ ++.++
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v  344 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV  344 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence                  113567799999999999988899999999 4566666665 21            11   2345565 55699


Q ss_pred             EEEeCCCcEEEEECCCCc
Q 019326          226 FTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~  243 (343)
                      ++|+.....++|+...|.
T Consensus       345 ~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  345 MTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ecccccceEEEecCCCCc
Confidence            999999999999976554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.44  E-value=2.2e-10  Score=98.60  Aligned_cols=253  Identities=13%  Similarity=0.139  Sum_probs=160.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      ++++++.+|.++.+|.++       ++..-..     +.. +.+.+ ....+..++.+..+|.+..+|.++|+.+..+..
T Consensus       122 ~v~v~~~~g~l~ald~~t-------G~~~W~~-----~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        122 KVYIGSEKGQVYALNAED-------GEVAWQT-----KVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             EEEEEcCCCEEEEEECCC-------CCCcccc-----cCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            467788899999999877       3221111     111 11211 122367788888899999999999999988764


Q ss_pred             CCCCCe-----EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-------cEEEEEEec--CCCEEE
Q 019326           81 HESSSV-----TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-------GVNDLAVHH--SGKLAL  146 (343)
Q Consensus        81 ~~~~~v-----~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~--~~~~l~  146 (343)
                      . ...+     .+-... +      ..++.++.+|.+..+|..+++.+........       ....+..+|  .+..++
T Consensus       189 ~-~~~~~~~~~~sP~v~-~------~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy  260 (394)
T PRK11138        189 D-VPSLTLRGESAPATA-F------GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY  260 (394)
T ss_pred             C-CCcccccCCCCCEEE-C------CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence            3 1111     011111 2      3577788899999999999887766542110       011111122  245677


Q ss_pred             EEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC--CcceEEeeecCCC
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG--KKRILCAAPGENG  223 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~--~~~i~~~~~~~~~  223 (343)
                      .++.+|.+..+|..+++.+......... .+.  ..+..++++ .++.+..+|..+++.+.....  .....+... .++
T Consensus       261 ~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g  336 (394)
T PRK11138        261 ALAYNGNLVALDLRSGQIVWKREYGSVN-DFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNG  336 (394)
T ss_pred             EEEcCCeEEEEECCCCCEEEeecCCCcc-CcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECC
Confidence            7888999999999999887665543321 111  234455555 899999999999987765431  111222222 366


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecccccccEEE-EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG-IVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      +++.++.+|.|+++|..+|+.+.+.. -....+.+ ..+ .++          .|+.++.||.|..+++
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~~~~~~-~~~~~~~s~P~~-~~~----------~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRFVAQQK-VDSSGFLSEPVV-ADD----------KLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEE-cCCCcceeCCEE-ECC----------EEEEEeCCceEEEEeC
Confidence            78889999999999999999988876 33232322 222 222          7888899999988765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.44  E-value=4.2e-11  Score=94.13  Aligned_cols=220  Identities=15%  Similarity=0.173  Sum_probs=147.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC----CCeeee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS----TSSSLG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~----~~~~~~   76 (343)
                      +++.+.|.+++||--....         ++.+-.. ..-..+++++.+.  ...|+.|-..|++.-+.+.    .....+
T Consensus        39 v~~~s~drtvrv~lkrds~---------q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r  108 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSG---------QYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK  108 (404)
T ss_pred             eEEccccceeeeEEecccc---------ccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh
Confidence            5778899999999755421         1111111 1235678889988  6788899999999888654    344556


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      ....| ...+..+-|+...     +.+++.+.|..+.---.+.+..+..+... ....++.+.-.  +...|...|.|.+
T Consensus       109 ~~~~h-~~~v~~~if~~~~-----e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~~--~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  109 DYLAH-QARVSAIVFSLTH-----EWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDAL--YAFVGDHSGQITM  179 (404)
T ss_pred             hhhhh-hcceeeEEecCCc-----eeEEEeccccceEEEeeccCCcccceEee-ccCCCCceeeE--EEEecccccceEE
Confidence            66778 8999999999877     79999999987653333444433332211 11111111111  4555666676666


Q ss_pred             EEccCCceeE---EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEE--EecCCcceEEeeec-CCCeEEEEe
Q 019326          157 VNLVRGRRSF---YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC--ELDGKKRILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       157 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~--~~~~~~~i~~~~~~-~~~~l~~~~  229 (343)
                      -.+.......   ...+...+.+++|.+....++++ .|..+.+||+...+-..  ...|...+..+... --..+++++
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~  259 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG  259 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc
Confidence            6555443322   23345778999999999999999 99999999997654333  33377777777665 346899999


Q ss_pred             CCCcEEEEECCC
Q 019326          230 EDRSITAWDTNS  241 (343)
Q Consensus       230 ~dg~i~i~d~~~  241 (343)
                      .||.|.+|+++.
T Consensus       260 edg~i~~w~mn~  271 (404)
T KOG1409|consen  260 EDGGIVVWNMNV  271 (404)
T ss_pred             CCCeEEEEeccc
Confidence            999999999864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.44  E-value=2.7e-10  Score=98.04  Aligned_cols=266  Identities=10%  Similarity=0.088  Sum_probs=164.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEE---ec-CC-CCCe-EEEEecCceEEEeeCCCeEEEEEcCCCeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFS---YP-AH-LSPI-TTVAVSGTAAASGGTDDTIHLYDLSTSSSL   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~---~~-~h-~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~   75 (343)
                      ++++++.+|.|..+|..+       ++..-......   +. .. ...+ ..+...++.++.++.+|.+..+|.++|+.+
T Consensus        71 ~vy~~~~~g~l~ald~~t-------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         71 KVYAADRAGLVKALDADT-------GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             EEEEECCCCeEEEEECCC-------CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCc
Confidence            467778888898898876       32221111110   00 00 0011 123445778888889999999999999999


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEE-EEEec--CCCEEEEEeCCC
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVND-LAVHH--SGKLALTVGRDD  152 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-i~~~~--~~~~l~~~~~d~  152 (343)
                      ......  ..+.+--...+      ..++.++.++.+..+|.++++.+..+......... ..-+|  .+..++.++.+|
T Consensus       144 W~~~~~--~~~~ssP~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g  215 (394)
T PRK11138        144 WQTKVA--GEALSRPVVSD------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG  215 (394)
T ss_pred             ccccCC--CceecCCEEEC------CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC
Confidence            887655  23322111113      36777888999999999999988887642111000 00111  123577778899


Q ss_pred             eEEEEEccCCceeEEEEcCCcc--------eEEEEeC--CCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC
Q 019326          153 CLAMVNLVRGRRSFYHKIGKEA--------SLIKFDG--SGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE  221 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~  221 (343)
                      .+..+|..+++.........+.        ..+..+|  .+..++++ .++.+..+|..+++.+.+...... ..+.. .
T Consensus       216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~-~  293 (394)
T PRK11138        216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV-D  293 (394)
T ss_pred             EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE-E
Confidence            9999999999876654432110        0011112  23444444 889999999999988876653221 12222 4


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++.++.++.+|.+..+|..+++.+............+..+. + .         .|+.++.||.|.+.|..+++
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~-g---------~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N-G---------YLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C-C---------EEEEEeCCCEEEEEECCCCC
Confidence            66788888999999999999988765541111112222222 2 2         78889999999999999875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.8e-10  Score=94.35  Aligned_cols=291  Identities=13%  Similarity=0.140  Sum_probs=192.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEe-----eC-----CCeEEEEEc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASG-----GT-----DDTIHLYDL   69 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-----~~-----dg~i~iwd~   69 (343)
                      ++.+-+.+..++|++...       ..     .+.+..  ...+.++.|+  +++|.+=     ..     .-.+++|++
T Consensus        47 ~lfA~~~~~~v~i~~~~~-------~~-----~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   47 RLFAYSDNQVVKVFEIAT-------LK-----VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             cEEEEEcCCeEEEEEccC-------Cc-----EEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            355566677788887765       11     222222  1268888888  7776652     11     234789999


Q ss_pred             CCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC--CEEEE
Q 019326           70 STSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG--KLALT  147 (343)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~  147 (343)
                      +++.....++.. ...-++..|+.+.      .+++=-..+.+++|+....+.+ .-+.|...|..+.++|..  ..+++
T Consensus       113 et~~~~s~~q~k-~Q~~W~~qfs~dE------sl~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAv  184 (566)
T KOG2315|consen  113 ETGVQRSQIQKK-MQNGWVPQFSIDE------SLAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAV  184 (566)
T ss_pred             ccceehhheehh-hhcCcccccccch------hhhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEE
Confidence            997666666554 2222789999887      4555555678999999774432 223467889999999974  23332


Q ss_pred             -----EeCCCeEEEEEccCCceeEEE----EcCCcceEEEEeCCCCEEEEE----e---------CCcEEEEEcccceeE
Q 019326          148 -----VGRDDCLAMVNLVRGRRSFYH----KIGKEASLIKFDGSGEKFFMV----T---------EEKVGIHQAEDAKLL  205 (343)
Q Consensus       148 -----~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~---------~~~i~~~d~~~~~~~  205 (343)
                           .+.-+.+++|.+.........    -....-..+.|++-+.-+++.    -         +..+.++++......
T Consensus       185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~  264 (566)
T KOG2315|consen  185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS  264 (566)
T ss_pred             EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence                 234567899887632221111    112334457788777654433    1         235778888766777


Q ss_pred             EEecCCcceEEeeecCC-C--eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          206 CELDGKKRILCAAPGEN-G--VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       206 ~~~~~~~~i~~~~~~~~-~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                      -.+...++|.++.|++. .  -++-|-.--.+.|||++ +.++..+.   .++=+++-|+|.+.         +|+.+|.
T Consensus       265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~---------ii~lAGF  331 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGN---------IILLAGF  331 (566)
T ss_pred             EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCC---------EEEEeec
Confidence            77778999999999954 3  34456678899999998 77887776   55667889999987         8887775


Q ss_pred             C---CcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          283 D---GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       283 d---g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      +   |.|-|||+.+.+     .+..+.... -+-.+|+|||.+++......+++
T Consensus       332 GNL~G~mEvwDv~n~K-----~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlr  379 (566)
T KOG2315|consen  332 GNLPGDMEVWDVPNRK-----LIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLR  379 (566)
T ss_pred             CCCCCceEEEeccchh-----hccccccCC-ceEEEEcCCCcEEEEEeccccEE
Confidence            4   889999999854     233333222 45688999999998887775544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.8e-12  Score=108.04  Aligned_cols=283  Identities=14%  Similarity=0.175  Sum_probs=188.5

Q ss_pred             eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC-------CeeeeEeccCCCCCeEEEEEeCCCCCCCC
Q 019326           30 LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST-------SSSLGAIHHHESSSVTSLAFYTPQNLSVP  100 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~  100 (343)
                      +....+..+.||+..|..++--  .+.+++++.|.+|++|.++.       ..+..+++.| ..+|.++.|..+.     
T Consensus       723 ~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~l-----  796 (1034)
T KOG4190|consen  723 FDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADL-----  796 (1034)
T ss_pred             cceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeecc-----
Confidence            3445667888999999988654  78899999999999999863       2466778889 9999999999876     


Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeee--ccccEEEEEEecC--CCEEEE-EeCCCeEEEEEccCCceeEEEEcC----
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKV--HKKGVNDLAVHHS--GKLALT-VGRDDCLAMVNLVRGRRSFYHKIG----  171 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~--~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~----  171 (343)
                      ++++  +.||-|.+||.--++++.....  ..+.+..+...++  ...++. ++...+|+++|.+..+.....+..    
T Consensus       797 r~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~  874 (1034)
T KOG4190|consen  797 RSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG  874 (1034)
T ss_pred             ceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence            5555  4588999999876666654321  1223333444443  333333 467899999999988766554432    


Q ss_pred             --CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEE-EECCCCceeE
Q 019326          172 --KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITA-WDTNSGKVAY  246 (343)
Q Consensus       172 --~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~  246 (343)
                        ..+.+++..+.|+.++++ ++|.+.+.|.++|+.+.... .......++...+..++....|.++.+ |..-.+....
T Consensus       875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeee
Confidence              447789999999999999 99999999999999887765 334444444434567777777888888 8776665554


Q ss_pred             EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc-cccC-CCcccccccccceeEEEcCCCCceec
Q 019326          247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA-IKEK-PLPLAEAKTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~-~~~~~~~~~~~~i~~~~~s~~~~~~~  324 (343)
                      +.. ....+-.-+  -.-++         -|+++.....+.+|.-... .... ..++..-...+..++++.-|-+.-..
T Consensus       955 q~k-pppepahfl--qsvgp---------SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen  955 QDK-PPPEPAHFL--QSVGP---------SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred             ccC-CCCcchhhh--hccCc---------eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence            444 222222111  11122         5777776677777743221 1111 11222233445677888877776666


Q ss_pred             cccCCCCC
Q 019326          325 PQIGDSAP  332 (343)
Q Consensus       325 ~~~~~~~~  332 (343)
                      .|.+.+.+
T Consensus      1023 aGne~G~I 1030 (1034)
T KOG4190|consen 1023 AGNEHGAI 1030 (1034)
T ss_pred             ccCCCCce
Confidence            66666544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=3.1e-12  Score=106.72  Aligned_cols=269  Identities=17%  Similarity=0.198  Sum_probs=174.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEec-c
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIH-H   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~   80 (343)
                      .+++++.|++|++|.++++..     ...+..+.+++..|+.+|..+.|-...-..++.||-|.+||.--++.+.... .
T Consensus       749 SFiSASkDKTVKLWSik~EgD-----~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKPEGD-----EIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             ceeeccCCceEEEEEeccccC-----ccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcC
Confidence            368899999999999987432     2234457889999999999999983333334567889999998887766432 1


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEe-eCCCeEEEEECCCcceeeeeee-----ccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFST-SADGFVSIFDADPFVLLTSVKV-----HKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      ...+.+..+...++-+   ...+++| +...+|+++|.+..+....++.     .+..+.+++..+.|+.++.+-.+|.|
T Consensus       824 pk~~a~~~ikcl~nv~---~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci  900 (1034)
T KOG4190|consen  824 PKEGAGGNIKCLENVD---RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI  900 (1034)
T ss_pred             cccCCCceeEecccCc---chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence            1134444444444421   0244444 7789999999998877666653     34578999999999999999999999


Q ss_pred             EEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-eCCcEEE-EEcccceeEEEecCCcceEEeeecCCCeEEEEeCC
Q 019326          155 AMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-TEEKVGI-HQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~-~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      .+.|.++|+.+.....- -....++ .|..+.++.. .+..+.+ |....+....+.+.+......--+-+.-+++....
T Consensus       901 ~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~G  979 (1034)
T KOG4190|consen  901 AILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNG  979 (1034)
T ss_pred             EEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccC
Confidence            99999999866543321 1111111 3445555555 6777777 77666655544442221111111234456666666


Q ss_pred             CcEEEEECCC----CceeEEec-ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          232 RSITAWDTNS----GKVAYCIE-DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       232 g~i~i~d~~~----~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      ..+.+|--..    ...+..++ ....+..++++..|-+.         -+..|++.|.|.+
T Consensus       980 n~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~---------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  980 NILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC---------AFLAGNEHGAIAL 1032 (1034)
T ss_pred             cEEEEEecchhhhhhhhhccccccccCCccceeeeccccc---------hhhccCCCCceee
Confidence            7777774221    11111222 13456778888888877         6888888888875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.1e-10  Score=99.75  Aligned_cols=213  Identities=17%  Similarity=0.157  Sum_probs=132.4

Q ss_pred             CCCCCeEEEEec--CceEEEeeC-C--CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCCe--
Q 019326           40 AHLSPITTVAVS--GTAAASGGT-D--DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADGF--  111 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~--  111 (343)
                      .+...+.+..|+  |+.|+..+. +  ..|.+||+.+++... +... ........|+|++     +.|+ +.+.+|.  
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG-----~~La~~~~~~g~~~  287 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDG-----KKLALVLSKDGQPE  287 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCC-----CEEEEEEeCCCCeE
Confidence            456678889998  777776543 2  358889998876433 2222 2344578999999     5554 5566664  


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-C--CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-D--DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      |+++|+.+++. ..+..+.......+|+|+++.++..+. +  ..|.++|+.+++..............+|+|+++.++.
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence            77888887654 334445556677899999988876654 3  3577778877765433222233345789999999887


Q ss_pred             E--eCC--cEEEEEcccceeEEEecCCcceEEeeec-CCCeEEE-EeCCCc--EEEEECCCCceeEEecccccccEEEEE
Q 019326          189 V--TEE--KVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFT-GGEDRS--ITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       189 ~--~~~--~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      .  .++  .|.++|+.+++... +..........|+ +++.++. ...+|.  +++++. ++.....+. .+.+.+...+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~  443 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP-AGQGEVKSPA  443 (448)
T ss_pred             EEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc-CCCCCcCCCc
Confidence            7  334  45567777765432 2211111223566 4554444 444443  777776 466666666 5555666667


Q ss_pred             EEe
Q 019326          261 VLT  263 (343)
Q Consensus       261 ~~~  263 (343)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=2.7e-12  Score=120.01  Aligned_cols=195  Identities=14%  Similarity=0.203  Sum_probs=158.1

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      -..|.++.-+  ..+.+||+.||.|++|....++.+..++...+..|+.+.|+..|     +.+..+..||.+.+|... 
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-----nk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-----NKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-----CceeeeccCCceeecccC-
Confidence            3445555444  56789999999999999999988888865446899999999999     789999999999999987 


Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCc--eeEEEEcCCcceEEEEeCCCCEEEEE-eCCc
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGR---DDCLAMVNLVRGR--RSFYHKIGKEASLIKFDGSGEKFFMV-TEEK  193 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  193 (343)
                      .++....+.|.....++.|-.  ..+++++.   ++.+.+||..-..  ......+.+.++++++.|..+.++++ .+|.
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred             CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence            467778888999888888876  46666654   6889999975432  22335677889999999999999999 9999


Q ss_pred             EEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccc
Q 019326          194 VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH  252 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h  252 (343)
                      +++||++..++...++.        +....++++|+..|.|+||++.....+.+++..|
T Consensus      2360 v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCchhh
Confidence            99999998877766653        3346799999999999999999888888877444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.41  E-value=9.5e-10  Score=88.01  Aligned_cols=219  Identities=14%  Similarity=0.125  Sum_probs=142.0

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEe-cCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAV-SGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      +|.|..||..+       ++..-..   .+..-.....+... .++.+++++.++.|..||..+|+.+..+... .....
T Consensus         2 ~g~l~~~d~~t-------G~~~W~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~   70 (238)
T PF13360_consen    2 DGTLSALDPRT-------GKELWSY---DLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISG   70 (238)
T ss_dssp             TSEEEEEETTT-------TEEEEEE---ECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGS
T ss_pred             CCEEEEEECCC-------CCEEEEE---ECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccc
Confidence            68899999876       3222211   11111223333244 4788888899999999999999999888754 22111


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-eecc---ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-KVHK---KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      .. ...+      ..++.++.++.++.+|..+++.+... ....   ...........+..++.+..++.|..+|+++|+
T Consensus        71 ~~-~~~~------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   71 AP-VVDG------GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             GE-EEET------TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ee-eecc------cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            12 2223      36777778889999999999998884 4321   112222333337788888889999999999999


Q ss_pred             eeEEEEcCCcc-----------eEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCC
Q 019326          164 RSFYHKIGKEA-----------SLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      .+.........           ..-....++ .++.+ .++.+..+|..+++.+.... ...+.......++.++.++.+
T Consensus       144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~  221 (238)
T PF13360_consen  144 LLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSD  221 (238)
T ss_dssp             EEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEETT
T ss_pred             EEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEeCC
Confidence            88877664321           122222244 55555 67754444999999766444 333444233367788888899


Q ss_pred             CcEEEEECCCCceeEE
Q 019326          232 RSITAWDTNSGKVAYC  247 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~  247 (343)
                      +.|..||+++++.+.+
T Consensus       222 ~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  222 GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCCEEeE
Confidence            9999999999998754

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=5e-10  Score=97.46  Aligned_cols=210  Identities=10%  Similarity=0.064  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CC--eEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DG--FVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      .|.++|.+.... +.+... ...+.+..|+|++     +.|+..+. ++  .|++||+.+++... +....+.....+|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~-~~~~~~p~wSPDG-----~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRS-PEPLMSPAWSPDG-----RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCc-eEeecC-CCcccCceECCCC-----CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeEC
Confidence            577778765443 344444 5788999999999     66765543 33  68899998766432 22223334568999


Q ss_pred             cCCCEEEE-EeCCCe--EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCC--cEEEEEcccceeEEEecCCc
Q 019326          140 HSGKLALT-VGRDDC--LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEE--KVGIHQAEDAKLLCELDGKK  212 (343)
Q Consensus       140 ~~~~~l~~-~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~  212 (343)
                      |+|+.|+. .+.++.  |+++|+.+++...............|+|+++.++..  .++  .+.++|+.+++.........
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~  350 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE  350 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence            99997765 455664  888898887654443334455678999999988776  233  46666777766443222222


Q ss_pred             ceEEeeec-CCCeEEEEeC-CC--cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc-CCCc--
Q 019326          213 RILCAAPG-ENGVLFTGGE-DR--SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS-SDGV--  285 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~--  285 (343)
                      ......|+ ++++++..+. ++  .|.++|+.+++. ..+. .. .......|+|++.         +|+..+ .+|.  
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt-~~-~~d~~ps~spdG~---------~I~~~~~~~g~~~  418 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLT-ST-RLDESPSVAPNGT---------MVIYSTTYQGKQV  418 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEcc-CC-CCCCCceECCCCC---------EEEEEEecCCceE
Confidence            23345676 4556555443 44  466678877764 3333 11 1112335666665         665544 4443  


Q ss_pred             EEEEecc
Q 019326          286 ICVWDVR  292 (343)
Q Consensus       286 i~vwd~~  292 (343)
                      +.+++.+
T Consensus       419 l~~~~~~  425 (448)
T PRK04792        419 LAAVSID  425 (448)
T ss_pred             EEEEECC
Confidence            6666764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=6.1e-11  Score=101.95  Aligned_cols=256  Identities=13%  Similarity=0.114  Sum_probs=181.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCC-CCC--cceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYS-SDQ--KTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~-~~~--~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      .+++|+.||.+++..+.+....- +.+  ....+..-+++.||.+.|.-+.|+  .+.|-|...+|.|.+|-+-.+.-..
T Consensus        28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E  107 (1189)
T KOG2041|consen   28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE  107 (1189)
T ss_pred             eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH
Confidence            37899999999999987644321 111  223344567889999999999999  6788899999999999998886554


Q ss_pred             Eec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee-eeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           77 AIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL-TSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        77 ~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      +.. ....+.|.+++|+.+|     ..+...-.||.|.+=.++..+.- ..++  ......+.|++|.+.++.+-.+|.+
T Consensus       108 EMiNnRnKSvV~SmsWn~dG-----~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~  180 (1189)
T KOG2041|consen  108 EMINNRNKSVVVSMSWNLDG-----TKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGET  180 (1189)
T ss_pred             HHhhCcCccEEEEEEEcCCC-----cEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHhhhcCCcE
Confidence            432 2225789999999999     78999999999988777653321 1122  2234568899999888888889999


Q ss_pred             EEEEccCCc-------e-eE----EEEcCCcceEEEE--------eCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcc
Q 019326          155 AMVNLVRGR-------R-SF----YHKIGKEASLIKF--------DGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKR  213 (343)
Q Consensus       155 ~~wd~~~~~-------~-~~----~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~  213 (343)
                      .++|.+..-       + +.    ....+..+..+.|        .|+...++++ .+|.+.+..-.+......+...-.
T Consensus       181 hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~  260 (1189)
T KOG2041|consen  181 HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMK  260 (1189)
T ss_pred             EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence            999975431       1 10    1112334555555        3588899999 888888876666555555555577


Q ss_pred             eEEeeec-CCCeEEEEeCC---------CcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          214 ILCAAPG-ENGVLFTGGED---------RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       214 i~~~~~~-~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +....|+ +|..|+.++.+         +.|.+|..- |+.+.+++ -....|+++.|-..+-
T Consensus       261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlk-vpg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLK-VPGSCITGLSWEGTGL  321 (1189)
T ss_pred             eecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEe-cCCceeeeeEEcCCce
Confidence            8888887 46677777643         356666544 77778887 7777888888876653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.40  E-value=2.3e-10  Score=88.16  Aligned_cols=200  Identities=19%  Similarity=0.220  Sum_probs=134.9

Q ss_pred             CeEEEEECCCcceee--ee-eeccccEEEEEEec---CCC-EEEEEeCCCeEEEEEccCCceeEEEE-c-----CC-cce
Q 019326          110 GFVSIFDADPFVLLT--SV-KVHKKGVNDLAVHH---SGK-LALTVGRDDCLAMVNLVRGRRSFYHK-I-----GK-EAS  175 (343)
Q Consensus       110 g~i~iwd~~~~~~~~--~~-~~~~~~v~~i~~~~---~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~-----~~-~~~  175 (343)
                      |.+.+|++...+...  ++ ......+..+.|..   ++. .++-+..+|.|.++............ +     .. ...
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            455666665444332  11 11233455566643   233 55666778888888765443222221 1     11 245


Q ss_pred             EEEEeCCCCEEEEE-eCCcEEEEEcccceeEE--Eec-CCcceEEeeec--CCCeEEEEeCCCcEEEEECC-CCceeEEe
Q 019326          176 LIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC--ELD-GKKRILCAAPG--ENGVLFTGGEDRSITAWDTN-SGKVAYCI  248 (343)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~--~~~-~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~  248 (343)
                      ++.|++.+..+++. .+|.+.+.+.....+..  ..+ |..+.....|+  +.+++++|++|+.+..||++ .++.+..-
T Consensus       126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n  205 (339)
T KOG0280|consen  126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN  205 (339)
T ss_pred             EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence            67889999999998 88998866655544443  444 78888888887  45799999999999999999 45555553


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                      ..-|...|.++.-+|..        +.+++||+.|-.|++||.++..    .|+......+.|..+..+|.-.
T Consensus       206 ~kvH~~GV~SI~ss~~~--------~~~I~TGsYDe~i~~~DtRnm~----kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  206 SKVHTSGVVSIYSSPPK--------PTYIATGSYDECIRVLDTRNMG----KPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             ceeeecceEEEecCCCC--------CceEEEeccccceeeeehhccc----CccccCccccceEEEEecchhh
Confidence            33788999999877653        3499999999999999999642    2555666667799988888643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.37  E-value=1.6e-09  Score=86.74  Aligned_cols=213  Identities=16%  Similarity=0.164  Sum_probs=141.2

Q ss_pred             CCeEEEEEcCCCeeeeEeccCC-CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHE-SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      +|.|..||..+|+.+....... .....+.....+      ..+++++.++.|..||..+++.+..+.... .+.... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG------GRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET------TEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC------CEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-e
Confidence            6899999999999999886531 122332233333      478888999999999999999988887522 211111 2


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCC----cceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCc-
Q 019326          140 HSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGK----EASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKK-  212 (343)
Q Consensus       140 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-  212 (343)
                      ..+..+++++.++.++.+|..+|+..... ....    ..........+..++++ .++.+..+|+++++.+....... 
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            23456777778889999999999988874 3321    11223333347777777 69999999999999988876322 


Q ss_pred             c----e-------EEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          213 R----I-------LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       213 ~----i-------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      +    +       ..+.+ .++.++.++.++.+..+|..+++.+....   ...+..+ ....+.         .|+.++
T Consensus       154 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~---------~l~~~~  219 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVI-SDGRVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGG---------TLYVTS  219 (238)
T ss_dssp             -SS--EEEETTEEEEEEC-CTTEEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCT---------EEEEEE
T ss_pred             CCCcceeeecccccceEE-ECCEEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCC---------EEEEEe
Confidence            1    1       22333 33477778878864444999999765333   2222221 223333         777777


Q ss_pred             CCCcEEEEeccCcc
Q 019326          282 SDGVICVWDVRMAI  295 (343)
Q Consensus       282 ~dg~i~vwd~~~~~  295 (343)
                      .++.|..||+++++
T Consensus       220 ~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  220 SDGRLYALDLKTGK  233 (238)
T ss_dssp             TTTEEEEEETTTTE
T ss_pred             CCCEEEEEECCCCC
Confidence            99999999999985

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=4.5e-10  Score=94.42  Aligned_cols=187  Identities=15%  Similarity=0.132  Sum_probs=146.4

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeec---cccEEEEEE------ec--------------CCCEEEEEeCCCeEEEE
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVH---KKGVNDLAV------HH--------------SGKLALTVGRDDCLAMV  157 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~------~~--------------~~~~l~~~~~d~~i~~w  157 (343)
                      .+++....||.+++|+...++....+...   .+...+..|      +|              +...++-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            68999999999999999888877766532   223333333      22              23478888889999999


Q ss_pred             EccCCceeEEEE---cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCC
Q 019326          158 NLVRGRRSFYHK---IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGED  231 (343)
Q Consensus       158 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~d  231 (343)
                      +...++......   +.+.+.++.++.+-..|.++ .|..+..|+....+.++... .+..+.+++++ ++..+++++  
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--  163 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--  163 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence            999998776665   45778889988888899988 99999999999999998888 55667888887 456777765  


Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCC-eEEEEEcCCCcEEEEeccCc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP-YLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +.|.+||+++++.+..+. +|.++|+++.|...-.    ...| ++|.+...+.-+.+|-++..
T Consensus       164 ~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~----g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  164 RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLID----GIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ceEEEEEccCceEEEEec-CCCcceEEEEEEEecc----ccccceeeeccccccceeEEEEEcc
Confidence            589999999999999999 9999999999988711    1112 25556667778999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=5.7e-12  Score=117.92  Aligned_cols=200  Identities=17%  Similarity=0.272  Sum_probs=150.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .++|+.||.|++|.-..       +.  +.....+ .|. ..|+.+.|+  |+.+..+..||.+.+|... .+.....+.
T Consensus      2223 Yltgs~dgsv~~~~w~~-------~~--~v~~~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGH-------GQ--QVVCFRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred             EEecCCCceEEEEeccC-------CC--eEEEeec-cCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence            47999999999999865       11  1222222 244 889999999  9999999999999999987 677778888


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEEEECC--Cc-ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSIFDAD--PF-VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~--~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      | +...+.++|-..       .+++++.   ++.+.+||.-  .+ .++.  ..|.+.++++++-|..+.|++|+.+|.|
T Consensus      2291 h-nk~~~Df~Fi~s-------~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2291 H-NKALSDFRFIGS-------LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             C-Cccccceeeeeh-------hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence            9 889999999863       4666654   6799999972  22 2333  7799999999999999999999999999


Q ss_pred             EEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcce--------EEeeecCCCeE
Q 019326          155 AMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRI--------LCAAPGENGVL  225 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i--------~~~~~~~~~~l  225 (343)
                      ++||++..+....+..        ++ ...+|+++ ..|.++||++.....+..+++...-        ..+.....+.+
T Consensus      2361 ~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nri 2431 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRI 2431 (2439)
T ss_pred             EEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceE
Confidence            9999987765433322        34 56778888 9999999999998888877632111        11222245677


Q ss_pred             EEEeCCCc
Q 019326          226 FTGGEDRS  233 (343)
Q Consensus       226 ~~~~~dg~  233 (343)
                      ++|+.||+
T Consensus      2432 fsCgad~~ 2439 (2439)
T KOG1064|consen 2432 FSCGADGT 2439 (2439)
T ss_pred             EEecCCCC
Confidence            77777763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1.3e-09  Score=94.65  Aligned_cols=222  Identities=14%  Similarity=0.115  Sum_probs=153.3

Q ss_pred             EeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--------C------ceEEEeeCCCeEEEEEcC
Q 019326            5 AGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--------G------TAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         5 ~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--------~------~~l~s~~~dg~i~iwd~~   70 (343)
                      +-+....|.+.|...            .+.++.+.-|...|+.+.|.        .      -.+|++...|.|.+||..
T Consensus        30 AygshslV~VVDs~s------------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   30 AYGSHSLVSVVDSRS------------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             EEecCceEEEEehhh------------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            334446778888776            67788888999999999996        1      257888889999999999


Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEe
Q 019326           71 TSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVG  149 (343)
Q Consensus        71 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~  149 (343)
                      .+..+..+..+ ..++..++|.+..+-. ...|++-....++.+|+..+|+.............|+.+.| +.+.+..-+
T Consensus        98 ~~s~~~~l~~~-~~~~qdl~W~~~rd~S-rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   98 LASVINWLSHS-NDSVQDLCWVPARDDS-RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             hhhhhhhhcCC-CcchhheeeeeccCcc-hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            99888888888 8999999998765311 14667777778999999999999988876666777899988 456777777


Q ss_pred             CCCeEEEEEccCC-------ceeEEEEc-CC-----------------c--------ceEEEEeCCCCEEEEE-eCCcEE
Q 019326          150 RDDCLAMVNLVRG-------RRSFYHKI-GK-----------------E--------ASLIKFDGSGEKFFMV-TEEKVG  195 (343)
Q Consensus       150 ~d~~i~~wd~~~~-------~~~~~~~~-~~-----------------~--------~~~~~~~~~~~~~~~~-~~~~i~  195 (343)
                      ..|.+.+-+.-..       +....... ..                 +        ...++|+|.-+.++.. ....+.
T Consensus       176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell  255 (1062)
T KOG1912|consen  176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL  255 (1062)
T ss_pred             cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence            7777777664321       11111110 00                 0        1125567765544444 777888


Q ss_pred             EEEcccceeEEEec---CCcceEEeeecC-CCeEEEEeCCCcEEEEECC
Q 019326          196 IHQAEDAKLLCELD---GKKRILCAAPGE-NGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       196 ~~d~~~~~~~~~~~---~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~  240 (343)
                      ++|++-..++....   ...++..+-..+ ...|++.-.||.+.+|-.+
T Consensus       256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            88887776666665   222344444432 3467777777777777543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=7.5e-09  Score=98.51  Aligned_cols=233  Identities=11%  Similarity=0.116  Sum_probs=153.8

Q ss_pred             EEEec---CceEEEeeCCCeEEEEEcCCCeeeeEecc-CC------------CCCeEEEEEeCCCCCCCCceEEEe-eCC
Q 019326           47 TVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHH-HE------------SSSVTSLAFYTPQNLSVPRNLFST-SAD  109 (343)
Q Consensus        47 ~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~------------~~~v~~l~~~~~~~~~~~~~l~s~-~~d  109 (343)
                      .++++   +..+++-...+.|++||.. ++.+..+.. ..            -.....+++.+++     +.|+.+ ..+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-----n~LYVaDt~n  645 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-----NLLYVADTEN  645 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-----CEEEEEeCCC
Confidence            46665   5567777778899999986 444444432 10            1235788998877     455444 456


Q ss_pred             CeEEEEECCCcceeeeeeec-----------------cccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceeEEEE--
Q 019326          110 GFVSIFDADPFVLLTSVKVH-----------------KKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRRSFYHK--  169 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--  169 (343)
                      +.|+++|..++. +.++.+-                 -.....++++| ++..+++.+.++.|++||..++.......  
T Consensus       646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G  724 (1057)
T PLN02919        646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDG  724 (1057)
T ss_pred             ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCC
Confidence            789999987643 3333210                 01236799999 56667777788999999988765432111  


Q ss_pred             -------------cCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEe-------------c-C--------Cc
Q 019326          170 -------------IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCEL-------------D-G--------KK  212 (343)
Q Consensus       170 -------------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~-------------~-~--------~~  212 (343)
                                   .-..+..++++|++..++++  .++.|++||+.++......             . .        -.
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                         01235669999999877666  6789999999876532111             0 0        01


Q ss_pred             ceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecc------------cccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          213 RILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED------------AHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      ....++++ +++++++-..++.|++||..++........            +.-....+|++++++.         ++++
T Consensus       805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---------lyVa  875 (1057)
T PLN02919        805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---------LFVA  875 (1057)
T ss_pred             CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC---------EEEE
Confidence            23466776 456777778899999999987765432211            1123567888888776         8899


Q ss_pred             EcCCCcEEEEeccCcc
Q 019326          280 ASSDGVICVWDVRMAI  295 (343)
Q Consensus       280 ~~~dg~i~vwd~~~~~  295 (343)
                      -+.++.|++||++++.
T Consensus       876 Dt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ECCCCEEEEEECCCCc
Confidence            9999999999998863

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=6e-10  Score=96.77  Aligned_cols=308  Identities=11%  Similarity=0.107  Sum_probs=199.5

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec------CceEEEeeCCCeEEEEEcCCCee
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS------GTAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      +.|+++...|.|.+||...            ...+..+..|.++|..++|-      ...|++-....++.+|+..+|+.
T Consensus        80 lliAsaD~~GrIil~d~~~------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVL------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             eeEEeccccCcEEEEEehh------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            3678888899999999987            34455566788999999986      25677777778999999999999


Q ss_pred             eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC-------------------------------------
Q 019326           75 LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA-------------------------------------  117 (343)
Q Consensus        75 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~-------------------------------------  117 (343)
                      .+..... .....|+.+.|-..    +.+..-+..|.+.+-+.                                     
T Consensus       148 ~Wk~~ys-~~iLs~f~~DPfd~----rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts  222 (1062)
T KOG1912|consen  148 FWKYDYS-HEILSCFRVDPFDS----RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS  222 (1062)
T ss_pred             eeccccC-CcceeeeeeCCCCc----ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence            8888765 56677788877662    44444444555544432                                     


Q ss_pred             -------------------------------------CCcceeeeeeeccccEEEEEEecCC--CEEEEEeCCCeEEEEE
Q 019326          118 -------------------------------------DPFVLLTSVKVHKKGVNDLAVHHSG--KLALTVGRDDCLAMVN  158 (343)
Q Consensus       118 -------------------------------------~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~d~~i~~wd  158 (343)
                                                           +-..++....-..+.+.-+.+.|++  ..|++...||.+.+|-
T Consensus       223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence                                                 1112222222233444556666654  5789999999999997


Q ss_pred             ccCCceeEEE-------EcCCcc-----------eEEEEeCCCC-EEEEE-eCCcEEEEEcccceeEEEe----------
Q 019326          159 LVRGRRSFYH-------KIGKEA-----------SLIKFDGSGE-KFFMV-TEEKVGIHQAEDAKLLCEL----------  208 (343)
Q Consensus       159 ~~~~~~~~~~-------~~~~~~-----------~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~~~~----------  208 (343)
                      -+........       ....++           ......|... .++.. .++...+|.+.+++.-...          
T Consensus       303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~p  382 (1062)
T KOG1912|consen  303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLP  382 (1062)
T ss_pred             eeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccc
Confidence            6542111111       111222           2223344433 33333 7888888888754321100          


Q ss_pred             ------------------c----CCcceEEeeec-----------C-C-------CeEEEEeCCCcEEEEECCCCceeEE
Q 019326          209 ------------------D----GKKRILCAAPG-----------E-N-------GVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       209 ------------------~----~~~~i~~~~~~-----------~-~-------~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                                        .    |....++....           + +       .+++.|...|+|.++|+.++.....
T Consensus       383 f~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~  462 (1062)
T KOG1912|consen  383 FDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS  462 (1062)
T ss_pred             ccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh
Confidence                              0    11122221110           1 1       2688999999999999999999889


Q ss_pred             ecccccccEEEEEEEecCCCCCCCCCCeEEEEEc----------CCCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS----------SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                      +. .|...|.++.|.....          |++.+          .-+.+.+=|+++|.... +.........+|..+..|
T Consensus       463 fs-vht~~VkgleW~g~ss----------lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l~~~despI~~irvS  530 (1062)
T KOG1912|consen  463 FS-VHTSLVKGLEWLGNSS----------LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGLQKPDESPIRAIRVS  530 (1062)
T ss_pred             hc-ccccceeeeeecccee----------EEEeeeccccccccceeeeEEEEEcccccccc-cccCCCCCcCcceeeeec
Confidence            98 9999999999988763          54443          23467888999984222 222234455689999999


Q ss_pred             CCCceeccccCCCCCCCccc
Q 019326          318 STKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ..+.|++....++.+..++.
T Consensus       531 ~~~~yLai~Fr~~plEiwd~  550 (1062)
T KOG1912|consen  531 SSGRYLAILFRREPLEIWDL  550 (1062)
T ss_pred             ccCceEEEEecccchHHHhh
Confidence            99999999988887766554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.31  E-value=7.7e-11  Score=94.51  Aligned_cols=158  Identities=16%  Similarity=0.123  Sum_probs=122.1

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCce----eEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEE---EEccccee
Q 019326          133 VNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR----SFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGI---HQAEDAKL  204 (343)
Q Consensus       133 v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~---~d~~~~~~  204 (343)
                      ...+..++.+++++++..+....+++++....    ......+.....+.+..+......+ ..|.++-   |....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44556678888999888888887888766543    2334445566667777776666666 5555544   44444777


Q ss_pred             EEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          205 LCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       205 ~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      ...+.|-..++.++++ ++++++++..|..|++-.......+..+..||..-|..++..++.          .|+|+|.|
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sGD  214 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSGD  214 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCCC
Confidence            7777799999999999 568999999999999998887777888877899999999998876          68999999


Q ss_pred             CcEEEEeccCccccCCC
Q 019326          284 GVICVWDVRMAIKEKPL  300 (343)
Q Consensus       284 g~i~vwd~~~~~~~~~~  300 (343)
                      ++|++||+.+++.....
T Consensus       215 ~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CcEEEEecccCCccccc
Confidence            99999999998654433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=5e-09  Score=90.59  Aligned_cols=215  Identities=11%  Similarity=0.005  Sum_probs=127.1

Q ss_pred             CCCCeEEEEec--Cce---EEEeeCCC--eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCC--
Q 019326           41 HLSPITTVAVS--GTA---AASGGTDD--TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADG--  110 (343)
Q Consensus        41 h~~~v~~l~~~--~~~---l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg--  110 (343)
                      ....+.+-+|+  |+.   +++...+|  .|.+.++.+++...... . .+.....+|+|++     +.|+..+ .+|  
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~-~g~~~~p~wSPDG-----~~Laf~s~~~g~~  255 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-L-QGNQLMPTFSPRK-----KLLAFISDRYGNP  255 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-C-CCCccceEECCCC-----CEEEEEECCCCCc
Confidence            44556667888  443   23444443  57777888775443332 2 3445678999999     5666443 223  


Q ss_pred             --eEEEEECCCc---ceeeeeeeccccEEEEEEecCCCEEEEEe-CCCeEEEE--EccC-CceeEEE-EcCCcceEEEEe
Q 019326          111 --FVSIFDADPF---VLLTSVKVHKKGVNDLAVHHSGKLALTVG-RDDCLAMV--NLVR-GRRSFYH-KIGKEASLIKFD  180 (343)
Q Consensus       111 --~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~w--d~~~-~~~~~~~-~~~~~~~~~~~~  180 (343)
                        .+..|++..+   +.......+.......+|+|||+.|+..+ .+|...+|  ++.. +...... .....+....|+
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence              3444776542   33333322233446789999999877665 45654555  4432 2222222 223456778999


Q ss_pred             CCCCEEEEE-e---CCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEE-EEeC--CCcEEEEECCCCceeEEecccc
Q 019326          181 GSGEKFFMV-T---EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLF-TGGE--DRSITAWDTNSGKVAYCIEDAH  252 (343)
Q Consensus       181 ~~~~~~~~~-~---~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~-~~~~--dg~i~i~d~~~~~~~~~~~~~h  252 (343)
                      |+|+.++.. .   ...|.+||+.+++..........+....|++ ++.|+ ++..  ...|+++|+..++......  .
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~  413 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI--G  413 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--C
Confidence            999988876 2   2468999998887654433444566778884 55554 3333  3568888988776443332  3


Q ss_pred             cccEEEEEEEec
Q 019326          253 SARVKGIVVLTK  264 (343)
Q Consensus       253 ~~~v~~~~~~~~  264 (343)
                      ...+...+|+|.
T Consensus       414 ~g~~~~p~Ws~~  425 (428)
T PRK01029        414 SGEKRFPSWGAF  425 (428)
T ss_pred             CCcccCceecCC
Confidence            444556677654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=2.2e-09  Score=81.91  Aligned_cols=210  Identities=13%  Similarity=0.063  Sum_probs=142.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEe-ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      -.+||.|+..|...+|...+.+-...+ ..+ ...|+-+.=.-+.+    -.+..++.|.++++.+++.+..........
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~s-nn~v~~~~r~cd~~----~~~~i~sndht~k~~~~~~~s~~~~~h~~~  158 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVS-NNDVTLVKRYCDLK----FPLNIASNDHTGKTMVVSGDSNKFAVHNQN  158 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeeccc-ccchhhhhhhcccc----cceeeccCCcceeEEEEecCcccceeeccc
Confidence            457999999999999999876543333 333 33333221111111    357778889999998886544332222111


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee----EEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeE
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS----FYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL  205 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~  205 (343)
                      -.+.+++++++++++++.+....|..|.+......    ........--+..|+.....++++ .||.+.|||++.....
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            23889999999999999999999999988654321    222334556778999999999999 9999999999975543


Q ss_pred             EEe------cCCcceEEeeecCC---CeEEEEeCCCcEEEEECCCCceeEEec------cccc-ccEEEEEEEecCC
Q 019326          206 CEL------DGKKRILCAAPGEN---GVLFTGGEDRSITAWDTNSGKVAYCIE------DAHS-ARVKGIVVLTKND  266 (343)
Q Consensus       206 ~~~------~~~~~i~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~h~-~~v~~~~~~~~~~  266 (343)
                      ...      .|.+.+..+.|+.+   .+|+..-.-+.+.+.|++++...+.+.      ..|. ..|.+-.|+.++.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence            322      17788999999843   466666667889999999987655443      0122 2366666666655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1e-10  Score=100.59  Aligned_cols=224  Identities=11%  Similarity=0.127  Sum_probs=164.9

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe---------------eeeEeccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS---------------SLGAIHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      .....|++|+  .+++|+|+.||.+++..+.+..               .-+.+.+| +..|..+.|+.+.     +.|-
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTWNe~~-----QKLT   87 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTWNENN-----QKLT   87 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEecccc-----cccc
Confidence            4568899999  8899999999999999886531               22456788 9999999999887     7899


Q ss_pred             EeeCCCeEEEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeC
Q 019326          105 STSADGFVSIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDG  181 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~  181 (343)
                      +...+|.|.+|-+-.+.-...+-  ..++.|.+++|+.+|..+.....||.|.+=.+..+ .+.-..+. .....+.|++
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeecc
Confidence            99999999999987665433332  24568999999999999999999999987766543 33333333 3455789999


Q ss_pred             CCCEEEEE-eCCcEEEEEccccee-----EEEec-------CCcceEEeeec---------CCCeEEEEeCCCcEEEEEC
Q 019326          182 SGEKFFMV-TEEKVGIHQAEDAKL-----LCELD-------GKKRILCAAPG---------ENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       182 ~~~~~~~~-~~~~i~~~d~~~~~~-----~~~~~-------~~~~i~~~~~~---------~~~~l~~~~~dg~i~i~d~  239 (343)
                      +.+.++.+ .+|.+.+||.+..-.     .....       .+..+..+.|.         +...|+.+-..|.+.+..-
T Consensus       167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            99998888 899999999764211     01011       12235555553         2237889999999998866


Q ss_pred             CCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          240 NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      .+......+.  ..-.+.+..|++++.         .|+.++.|
T Consensus       247 eND~~Pvv~d--tgm~~vgakWnh~G~---------vLAvcG~~  279 (1189)
T KOG2041|consen  247 ENDPEPVVVD--TGMKIVGAKWNHNGA---------VLAVCGND  279 (1189)
T ss_pred             cCCCCCeEEe--cccEeecceecCCCc---------EEEEccCc
Confidence            5554444444  347788999999987         88888865

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=5.2e-08  Score=77.79  Aligned_cols=254  Identities=13%  Similarity=0.117  Sum_probs=165.1

Q ss_pred             CCeEEEEEcCCCe-eee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---CeEEEEECCC--ccee--eeeeecc
Q 019326           61 DDTIHLYDLSTSS-SLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---GFVSIFDADP--FVLL--TSVKVHK  130 (343)
Q Consensus        61 dg~i~iwd~~~~~-~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~--~~~~~~~  130 (343)
                      +.-|.+|++++.. .+.  .+-.. ....+-|+|+|+.     +.|.++..+   |.|..|.++.  |++.  .......
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~-~~nptyl~~~~~~-----~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAE-LGNPTYLAVNPDQ-----RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccc-cCCCceEEECCCC-----CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence            4569999998432 111  12233 5778899999998     788887664   6787777764  4322  2222223


Q ss_pred             ccEEEEEEecCCCEEEEEeC-CCeEEEEEccC-Cce---eEEEEcCCc----------ceEEEEeCCCCEEEEE--eCCc
Q 019326          131 KGVNDLAVHHSGKLALTVGR-DDCLAMVNLVR-GRR---SFYHKIGKE----------ASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      .+-..+++++++++++++.. .|.|.++-++. |..   +....+...          +....+.|+++++++.  ....
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            34488999999999888875 58899999866 332   122233222          6778999999999998  7888


Q ss_pred             EEEEEcccceeEEEe----cCCcceEEeeecCC-CeEEEE-eCCCcEEEEECCCC-ceeEEec------cc--ccccEEE
Q 019326          194 VGIHQAEDAKLLCEL----DGKKRILCAAPGEN-GVLFTG-GEDRSITAWDTNSG-KVAYCIE------DA--HSARVKG  258 (343)
Q Consensus       194 i~~~d~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~-~~dg~i~i~d~~~~-~~~~~~~------~~--h~~~v~~  258 (343)
                      |.+|++..+++...-    +.......+.|+++ ++.+.. --+++|.+|..... ..+..++      ..  -.....+
T Consensus       169 i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         169 IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            999999977654432    35566788999964 555444 45899999998763 2333333      11  1235567


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcC-CCcEEEEeccCccccCCCcccccccccc-eeEEEcCCCCceeccccCCC
Q 019326          259 IVVLTKNDGGSTAENPYLVASASS-DGVICVWDVRMAIKEKPLPLAEAKTNSR-LTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~~~~~~~~~  330 (343)
                      |.++++++         +|.++.. ...|-+|.+...... ...+......+. ...+.+++.++++++...+.
T Consensus       249 Ihis~dGr---------FLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         249 IHISPDGR---------FLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             EEECCCCC---------EEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            77777776         7777642 347888888754211 111112222333 67788999999888776655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.4e-08  Score=87.84  Aligned_cols=215  Identities=10%  Similarity=0.042  Sum_probs=128.4

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCce--E-EEeeCCC--eEEEEECCCcceeeeeeeccccEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN--L-FSTSADG--FVSIFDADPFVLLTSVKVHKKGVNDL  136 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i  136 (343)
                      ..|.+.|.+.+... .+... ......=+|+|++     +.  + ++...+|  .|.+.++.+++... +....+.....
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~-~~~~~sP~wSPDG-----~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p  236 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQE-HSLSITPTWMHIG-----SGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP  236 (428)
T ss_pred             ceEEEEcCCCCCce-EcccC-CCCcccceEccCC-----CceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce
Confidence            35777777655443 34334 4566777999998     43  2 2444443  58888888765433 23244455678


Q ss_pred             EEecCCCEEEEEeC-----CCeEEEEEccCC---ceeEEEEcC-CcceEEEEeCCCCEEEEE--eCCcEEEE--Eccc-c
Q 019326          137 AVHHSGKLALTVGR-----DDCLAMVNLVRG---RRSFYHKIG-KEASLIKFDGSGEKFFMV--TEEKVGIH--QAED-A  202 (343)
Q Consensus       137 ~~~~~~~~l~~~~~-----d~~i~~wd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~i~~~--d~~~-~  202 (343)
                      +|+|||+.|+..+.     +-.+..|++..+   +........ ......+|+|+|+.++..  .++...+|  ++.. +
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            99999988876653     223444676653   222222222 234568999999988776  35544455  4432 2


Q ss_pred             eeEEEec-CCcceEEeeecC-CCeEEEEeC-C--CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          203 KLLCELD-GKKRILCAAPGE-NGVLFTGGE-D--RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       203 ~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      .....+. ....+....|++ ++.|+..+. +  ..|.+||+.+++.. .+. .....+....|+|++.         .|
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt-~~~~~~~~p~wSpDG~---------~L  385 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLT-TSPENKESPSWAIDSL---------HL  385 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-Ecc-CCCCCccceEECCCCC---------EE
Confidence            2233333 334566778884 566655443 2  46999999988754 343 2334567788888876         66


Q ss_pred             EE-EcC--CCcEEEEeccCcc
Q 019326          278 AS-ASS--DGVICVWDVRMAI  295 (343)
Q Consensus       278 ~s-~~~--dg~i~vwd~~~~~  295 (343)
                      +. +..  ...|.+||+..+.
T Consensus       386 ~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        386 VYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             EEEECCCCCceEEEEECCCCC
Confidence            54 333  3568888887653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.24  E-value=4.2e-07  Score=73.00  Aligned_cols=203  Identities=15%  Similarity=0.136  Sum_probs=136.4

Q ss_pred             EEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEe-CCCCCCCCceEEEeeCCCeEEEEECCCcce
Q 019326           47 TVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFY-TPQNLSVPRNLFSTSADGFVSIFDADPFVL  122 (343)
Q Consensus        47 ~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  122 (343)
                      +.+|.   +.++++--..+.|..|+..+++.. .+...  . ...+++. +++      .|+.+...+ +.++|..+++.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~--~-~~G~~~~~~~g------~l~v~~~~~-~~~~d~~~g~~   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP--G-PNGMAFDRPDG------RLYVADSGG-IAVVDPDTGKV   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS--S-EEEEEEECTTS------EEEEEETTC-EEEEETTTTEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC--C-CceEEEEccCC------EEEEEEcCc-eEEEecCCCcE
Confidence            35565   556666667899999999877543 33333  2 6777777 555      556666554 45559888754


Q ss_pred             eeeeee-----ccccEEEEEEecCCCEEEEEeCC--------CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE
Q 019326          123 LTSVKV-----HKKGVNDLAVHHSGKLALTVGRD--------DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       123 ~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (343)
                      ......     .....+.+++.|+|++.++....        |.|..++.. ++.......-...+.++|+|+++.++++
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeec
Confidence            444332     23578999999999977776643        567777776 5544444445677899999999988877


Q ss_pred             --eCCcEEEEEcccce-------eEEEecCC-cceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEE
Q 019326          190 --TEEKVGIHQAEDAK-------LLCELDGK-KRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       190 --~~~~i~~~d~~~~~-------~~~~~~~~-~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                        ..+.|..|++....       ....+... ...-.+++. ++++.++....+.|.++|.. |+.+..+. .....+++
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~-~p~~~~t~  229 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE-LPVPRPTN  229 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--SSSSEEE
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc-CCCCCEEE
Confidence              67788888886322       12222222 247778887 45666666678999999988 99888888 44558999


Q ss_pred             EEEEe
Q 019326          259 IVVLT  263 (343)
Q Consensus       259 ~~~~~  263 (343)
                      ++|..
T Consensus       230 ~~fgg  234 (246)
T PF08450_consen  230 CAFGG  234 (246)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99953

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.23  E-value=5.9e-08  Score=90.93  Aligned_cols=302  Identities=13%  Similarity=0.070  Sum_probs=186.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC---------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS---------   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~---------   70 (343)
                      .|+.+..+|.|.+......      ......+.+..+   ...|.+++|+  ++.|+..+.++++.+-+-+         
T Consensus        89 ~l~~~~~~Gdi~~~~~~~~------~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l  159 (928)
T PF04762_consen   89 SLCIALASGDIILVREDPD------PDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPL  159 (928)
T ss_pred             cEEEEECCceEEEEEccCC------CCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeec
Confidence            4788889999988833220      111223444433   5689999999  7788888888888775432         


Q ss_pred             ------C--------CeeeeEecc------------------------CCCCCeEEEEEeCCCCCCCCceEEEeeC---C
Q 019326           71 ------T--------SSSLGAIHH------------------------HESSSVTSLAFYTPQNLSVPRNLFSTSA---D  109 (343)
Q Consensus        71 ------~--------~~~~~~~~~------------------------~~~~~v~~l~~~~~~~~~~~~~l~s~~~---d  109 (343)
                            .        |+....|++                        . ...-..++|..||     .++++.+.   .
T Consensus       160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~-dd~~~~ISWRGDG-----~yFAVss~~~~~  233 (928)
T PF04762_consen  160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW-DDGRVRISWRGDG-----EYFAVSSVEPET  233 (928)
T ss_pred             CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc-CCCceEEEECCCC-----cEEEEEEEEcCC
Confidence                  0        111111111                        1 2344578899998     78888775   2


Q ss_pred             ---CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCceeEEEEc-----CCcceEEE
Q 019326          110 ---GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR---DDCLAMVNLVRGRRSFYHKI-----GKEASLIK  178 (343)
Q Consensus       110 ---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~  178 (343)
                         ..++||+-+ |++..+-+.-.+--.+++|.|.|+++++.-.   ...|.+|. ++|-.-..+..     ...+..+.
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence               479999976 4544444433344457899999999988765   34566776 34444444433     35688899


Q ss_pred             EeCCCCEEEEEeCCcEEEEEccccee--EEEec--CCcceEEeeecC--CCeEEEEeCCCcEEEEECC----CCc-----
Q 019326          179 FDGSGEKFFMVTEEKVGIHQAEDAKL--LCELD--GKKRILCAAPGE--NGVLFTGGEDRSITAWDTN----SGK-----  243 (343)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~--~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~----~~~-----  243 (343)
                      |++++..|++.....|.+|-..+..-  .+.+.  ....+..+.|++  ...|...+.+|.+..+++.    .+.     
T Consensus       312 Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~  391 (928)
T PF04762_consen  312 WNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPN  391 (928)
T ss_pred             ECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCcc
Confidence            99999999999666699999887652  22222  334455688884  3456666666666555432    110     


Q ss_pred             ---eeEEec----------------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc-
Q 019326          244 ---VAYCIE----------------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE-  297 (343)
Q Consensus       244 ---~~~~~~----------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-  297 (343)
                         .+..+.                      -....+|.+++|++.+.         .+++-..||.|.+|........ 
T Consensus       392 D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~---------~~avl~~d~~l~~~~~~~~~~~~  462 (928)
T PF04762_consen  392 DNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS---------RFAVLTSDGSLSIYEWDLKNMWS  462 (928)
T ss_pred             CceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC---------eEEEEECCCCEEEEEecCCCccc
Confidence               011111                      11356899999999876         6999999999999986543211 


Q ss_pred             --CCCccccc-----------ccccceeEEEcCCCCceeccccCC
Q 019326          298 --KPLPLAEA-----------KTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       298 --~~~~~~~~-----------~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                        .+.....+           .....+..++|..+..+.+.....
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (928)
T PF04762_consen  463 VKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD  507 (928)
T ss_pred             ccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence              11111111           123456777877777665554443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.4e-08  Score=85.21  Aligned_cols=230  Identities=15%  Similarity=0.154  Sum_probs=151.6

Q ss_pred             EEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEE-----eeCCCeEEEEECCC
Q 019326           46 TTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFS-----TSADGFVSIFDADP  119 (343)
Q Consensus        46 ~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~  119 (343)
                      .+..|+ .+.++.--..+.+++|++.+.+.+. -.-| ...|+.+.++|...   +..+++     .+.-+.|+||....
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~-~~~i~~f~lSpgp~---~~~vAvyvPe~kGaPa~vri~~~~~  203 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLS-VSGITMLSLSPGPE---PPFVAVYVPEKKGAPASVRIYKYPE  203 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCcccee-eeee-ccceeeEEecCCCC---CceEEEEccCCCCCCcEEEEecccc
Confidence            366777 5555555556789999988743222 1224 67899999998842   133332     34456899998752


Q ss_pred             cceeeee---eeccccEEEEEEecCCCE-EEEEe--C---------CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC
Q 019326          120 FVLLTSV---KVHKKGVNDLAVHHSGKL-ALTVG--R---------DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE  184 (343)
Q Consensus       120 ~~~~~~~---~~~~~~v~~i~~~~~~~~-l~~~~--~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
                      ...-..+   .-....=..+.|++-|.- |+.++  -         +.++++.++....+.....-.++|.++.|+|+++
T Consensus       204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence            2111111   011122234778876642 22222  2         3468888887555555666679999999999999


Q ss_pred             EEEEE---eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeC---CCcEEEEECCCCceeEEecccccccEE
Q 019326          185 KFFMV---TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGE---DRSITAWDTNSGKVAYCIEDAHSARVK  257 (343)
Q Consensus       185 ~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~h~~~v~  257 (343)
                      .|+++   .-..+.+||++- .++..+ ..++-+++.|++ +++++.++-   .|.|.+||+.+.+.+..+. +.  .-+
T Consensus       284 EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a~--~tt  358 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-AA--NTT  358 (566)
T ss_pred             EEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-cC--Cce
Confidence            98888   567899999753 444443 456677888884 676666654   4889999999988888887 33  234


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcC------CCcEEEEeccCc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASS------DGVICVWDVRMA  294 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~  294 (343)
                      -..|+|+++         +++|+..      |+.++||++...
T Consensus       359 ~~eW~PdGe---------~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  359 VFEWSPDGE---------YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEEcCCCc---------EEEEEeccccEEecCCeEEEEecCc
Confidence            568888887         8888864      688999999754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=8.9e-11  Score=92.41  Aligned_cols=164  Identities=14%  Similarity=0.163  Sum_probs=124.8

Q ss_pred             EEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc-----eeEEEecCCcceEEeee
Q 019326          146 LTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA-----KLLCELDGKKRILCAAP  219 (343)
Q Consensus       146 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~-----~~~~~~~~~~~i~~~~~  219 (343)
                      ++.+.+..+.+-|++++-..... ....|-++.|...++.++.+ .+|.|..+|++..     .+...+-|...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            56667788999999988654443 66788889999989999988 9999999999864     45667779999999886


Q ss_pred             c--CCCeEEEEeCCCcEEEEECCCCce---eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          220 G--ENGVLFTGGEDRSITAWDTNSGKV---AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       220 ~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      -  .+.+|++.+.+|+|.+||.+--+.   +.+++ +|...-.-+-++-+..++       .+++++.|-..|||.++.+
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg-------~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEG-------SIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccc-------eEEEccCeeEEEEEecccC
Confidence            5  567899999999999999987666   88888 886655444444443333       8899999999999999988


Q ss_pred             cccCCCcccccccccceeEEEcCC
Q 019326          295 IKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       295 ~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      ......|.........+.++++..
T Consensus       379 hLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  379 HLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             ceeeccCCCCccccccccceehhc
Confidence            655555544444343466666643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=6.2e-08  Score=80.01  Aligned_cols=143  Identities=9%  Similarity=0.068  Sum_probs=113.8

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCC-eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDD-TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      +|.+.|.-..+.  ++-++.|..|| .+-|+|..+++...... . -+.|.++..++++     ++++.+.....+.+.|
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~-lg~I~av~vs~dG-----K~~vvaNdr~el~vid  429 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-D-LGNIEAVKVSPDG-----KKVVVANDRFELWVID  429 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-C-ccceEEEEEcCCC-----cEEEEEcCceEEEEEE
Confidence            577788887777  77899999999 89999999876554444 4 5899999999999     7899998889999999


Q ss_pred             CCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC----eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE
Q 019326          117 ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD----CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (343)
                      ++++.....-+...+-|+.++|+|++++++-+--+|    .|+++|+..++..........-.+-+|.|+++++...
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence            999876655566677899999999999999876654    5899999888765444443444556788888877655

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=1.6e-07  Score=88.17  Aligned_cols=271  Identities=14%  Similarity=0.089  Sum_probs=167.5

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEE----EcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLY----DLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      .+.|.++.|-  .+.++.+..+|.|.+.    +..+..  .+.-+.-...|.+++|+|+.     ..|+..+.++++.+.
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~-----Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDE-----ELLALVTGEGNLLLM  147 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCc-----CEEEEEeCCCEEEEE
Confidence            4678888887  6678888889999998    444332  12222226789999999999     899999999988876


Q ss_pred             ECC---------------C--------cceeeeeee------------------------ccccEEEEEEecCCCEEEEE
Q 019326          116 DAD---------------P--------FVLLTSVKV------------------------HKKGVNDLAVHHSGKLALTV  148 (343)
Q Consensus       116 d~~---------------~--------~~~~~~~~~------------------------~~~~v~~i~~~~~~~~l~~~  148 (343)
                      ...               .        |+.-.+|.|                        +...-..|+|-.||.++++.
T Consensus       148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            421               0        011111110                        22244568899999999988


Q ss_pred             eC---C---CeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-e---CCcEEEEEcccceeEEEec-----CCc
Q 019326          149 GR---D---DCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-T---EEKVGIHQAEDAKLLCELD-----GKK  212 (343)
Q Consensus       149 ~~---d---~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~---~~~i~~~d~~~~~~~~~~~-----~~~  212 (343)
                      +.   .   ..+++|+-+ |....... ..+--..++|.|.|+.+++. .   ...|.+|. ++|-.-..+.     ...
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence            75   2   578999854 54332222 22334569999999999999 2   23344454 3444333333     356


Q ss_pred             ceEEeeec-CCCeEEEEeCCCcEEEEECCCCc--eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          213 RILCAAPG-ENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      .+..+.|+ ++..|+..-.| .|.+|-..+..  ..+++.......+..+.|+|....        .|...+.+|.+..+
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~--------~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL--------RLHVLTSNGQYEIY  376 (928)
T ss_pred             eeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC--------EEEEEecCCcEEEE
Confidence            79999998 45677765544 49999887654  233333223344555788876542        34444444444332


Q ss_pred             e-------------------------------ccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          290 D-------------------------------VRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       290 d-------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      +                               ++......|+.........+|.+++|++++.-++.-..++
T Consensus       377 ~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  377 DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence            2                               2222233334445566678899999998886555555555

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.18  E-value=8.8e-08  Score=79.70  Aligned_cols=256  Identities=11%  Similarity=0.110  Sum_probs=162.1

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCC--eE-EEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSP--IT-TVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES   83 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~   83 (343)
                      ++.+.+||+.+            ...+..+.+...+  .. -+.|+  ..++|-. ....+.|+++...-....+..-..
T Consensus       107 ~n~~~vwd~~s------------g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~  173 (561)
T COG5354         107 KNNVFVWDIAS------------GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRP  173 (561)
T ss_pred             cCceeEEeccC------------ceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccc
Confidence            44688999887            3445555554444  33 45565  4444433 345699999722222222222213


Q ss_pred             CCeEEEEEeCCCCCCCCceEEE-----eeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC--------
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFS-----TSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR--------  150 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--------  150 (343)
                      ..|....|+|.++.   ..|+.     .+..+++++|.+..+..+.+-......=..+.|++.|++|++--.        
T Consensus       174 ~gi~dFsisP~~n~---~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         174 VGILDFSISPEGNH---DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             cceeeEEecCCCCC---ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence            67888899998532   33332     355789999999766655554433333356888888877654321        


Q ss_pred             ---CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE---eCCcEEEEEcccceeEEEecCCcceEEeeecC-CC
Q 019326          151 ---DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV---TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NG  223 (343)
Q Consensus       151 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~  223 (343)
                         ...+++++++...........++|...+|.|.++.+++.   ....+.++|++..  +...-.+..-+.+.|++ .+
T Consensus       251 yfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r  328 (561)
T COG5354         251 YFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHER  328 (561)
T ss_pred             eeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCccc
Confidence               356888888755544444667999999999999988877   4778889998876  33333444445566664 56


Q ss_pred             eEEEEeC---CCcEEEEECCCCceeE-EecccccccEEEEEEEecCCCCCCCCCCeEEEEEc------CCCcEEEEeccC
Q 019326          224 VLFTGGE---DRSITAWDTNSGKVAY-CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS------SDGVICVWDVRM  293 (343)
Q Consensus       224 ~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~  293 (343)
                      +++.++-   .|.|-+||......+. .+. +.  ..+-+.|+|+++         ++.+..      .|..|.|||+..
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~-~~--n~s~~~wspd~q---------F~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFN-GL--NTSYCDWSPDGQ---------FYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEee-cC--CceEeeccCCce---------EEEecCCCcccccCcceEEEEecC
Confidence            7776554   4789999987655444 444 22  233456777776         666653      478899999986


Q ss_pred             c
Q 019326          294 A  294 (343)
Q Consensus       294 ~  294 (343)
                      .
T Consensus       397 ~  397 (561)
T COG5354         397 A  397 (561)
T ss_pred             c
Confidence            5

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.17  E-value=1.8e-07  Score=89.41  Aligned_cols=195  Identities=9%  Similarity=0.064  Sum_probs=129.4

Q ss_pred             CeEEEEec--CceEEEee-CCCeEEEEEcCCCeeeeEeccC----------------CCCCeEEEEEeCCCCCCCCceEE
Q 019326           44 PITTVAVS--GTAAASGG-TDDTIHLYDLSTSSSLGAIHHH----------------ESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~----------------~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      ....++++  ++.|+.+. ..+.|+++|..++. +..+.+.                .-..-..++++|++.    ..++
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g----~LyV  699 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE----KVYI  699 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC----eEEE
Confidence            35778887  56565554 45779999987764 3333110                001345789999541    5677


Q ss_pred             EeeCCCeEEEEECCCcceeeeeeec---------------cccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCceeEEE
Q 019326          105 STSADGFVSIFDADPFVLLTSVKVH---------------KKGVNDLAVHHSGK-LALTVGRDDCLAMVNLVRGRRSFYH  168 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~i~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~  168 (343)
                      +...++.|++||..++... .+.+.               -.....|+++|+++ ++++-+.++.|++||+.++......
T Consensus       700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            7778899999998775432 22111               12456799999987 4455566799999999876532111


Q ss_pred             E-----------c-----------CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC--------------C
Q 019326          169 K-----------I-----------GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG--------------K  211 (343)
Q Consensus       169 ~-----------~-----------~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~--------------~  211 (343)
                      .           .           -..+..++++++|..+++- .++.|++||..++........              -
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence            0           0           1134678999999877666 889999999988766543321              1


Q ss_pred             cceEEeeec-CCCeEEEEeCCCcEEEEECCCCce
Q 019326          212 KRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       212 ~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  244 (343)
                      .....++++ +++++++.+.++.|++||+.+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            235667776 456777778899999999998764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.17  E-value=1.7e-07  Score=82.76  Aligned_cols=266  Identities=12%  Similarity=0.116  Sum_probs=161.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe-cCCCCCe--EEEEecC-ceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY-PAHLSPI--TTVAVSG-TAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v--~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      ++++++.++.|+.+|..+.       +..-....... ..+...+  ..++..+ ..++.++.+|.|..+|.++|+.+..
T Consensus        63 ~vy~~~~~g~l~AlD~~tG-------~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~  135 (488)
T cd00216          63 DMYFTTSHSALFALDAATG-------KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWK  135 (488)
T ss_pred             EEEEeCCCCcEEEEECCCC-------hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeee
Confidence            4677888899999998762       22111111000 0000111  1123334 7888999999999999999999988


Q ss_pred             eccCCCCC-----e-EEEEEeCCCCCCCCceEEEee---------CCCeEEEEECCCcceeeeeeeccc-----------
Q 019326           78 IHHHESSS-----V-TSLAFYTPQNLSVPRNLFSTS---------ADGFVSIFDADPFVLLTSVKVHKK-----------  131 (343)
Q Consensus        78 ~~~~~~~~-----v-~~l~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~-----------  131 (343)
                      +... ...     + .+..+.. +      .++.++         .+|.+..+|..+++.+..++....           
T Consensus       136 ~~~~-~~~~~~~~i~ssP~v~~-~------~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~  207 (488)
T cd00216         136 FGNN-DQVPPGYTMTGAPTIVK-K------LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPD  207 (488)
T ss_pred             ecCC-CCcCcceEecCCCEEEC-C------EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCC
Confidence            8654 221     1 1112221 2      455553         368899999999998887764211           


Q ss_pred             ---------cE-EEEEEecCCCEEEEEeCCC------------------eEEEEEccCCceeEEEEcCCc-c------eE
Q 019326          132 ---------GV-NDLAVHHSGKLALTVGRDD------------------CLAMVNLVRGRRSFYHKIGKE-A------SL  176 (343)
Q Consensus       132 ---------~v-~~i~~~~~~~~l~~~~~d~------------------~i~~wd~~~~~~~~~~~~~~~-~------~~  176 (343)
                               .+ ...++.+.+..++.++.++                  .|.-+|..+++.......... .      ..
T Consensus       208 ~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~  287 (488)
T cd00216         208 RQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ  287 (488)
T ss_pred             cceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence                     01 1234455566777777665                  799999999998877654321 1      11


Q ss_pred             EEEe----CCCC---EEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEE------------------eC
Q 019326          177 IKFD----GSGE---KFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTG------------------GE  230 (343)
Q Consensus       177 ~~~~----~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~------------------~~  230 (343)
                      ..+.    -++.   .++++ .++.+..+|.++++.+.......  ..+..++ +.++.+                  ..
T Consensus       288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~  364 (488)
T cd00216         288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPG  364 (488)
T ss_pred             CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-ceEEEccccccccCcccccCCCCCCC
Confidence            1111    1233   45555 78999999999999988765221  1122223 333332                  24


Q ss_pred             CCcEEEEECCCCceeEEeccc-cc------ccE--EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          231 DRSITAWDTNSGKVAYCIEDA-HS------ARV--KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~-h~------~~v--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      +|.+.-.|..+|+.+.+...+ +.      .+.  ..+..  .+.         .|+.++.||.|+.+|.++++.
T Consensus       365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~---------~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN---------LVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC---------eEEEECCCCeEEEEECCCCce
Confidence            688999999999998887622 00      111  11222  222         888999999999999999863

The alignment model contains an 8-bladed beta-propeller.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=2.2e-08  Score=84.04  Aligned_cols=263  Identities=13%  Similarity=0.042  Sum_probs=171.9

Q ss_pred             eEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----------Ce
Q 019326           45 ITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----------GF  111 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----------g~  111 (343)
                      =+-+.|+  |.+|+|--..| |.+|--.+-..++.|. |  ..|.-+.|+|+.     ++|++=+..           ..
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H--p~Vq~idfSP~E-----kYLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H--PGVQFIDFSPNE-----KYLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C--CCceeeecCCcc-----ceEEEecCCccccCcccCCCce
Confidence            3457888  89999988877 8899766655565554 4  578999999999     899987642           47


Q ss_pred             EEEEECCCcceeeeeeeccc--cE-EEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEE
Q 019326          112 VSIFDADPFVLLTSVKVHKK--GV-NDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFF  187 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~--~v-~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  187 (343)
                      +.|||+.+|...+.+....+  .+ .-..|+.|+++++.-.. ..|.+|+..+...+-..... ..|....|+|.++.|+
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            99999999999888876332  22 33679999999987766 57999987664433322332 5577789999988887


Q ss_pred             EE--e----CCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEE----------eCCCcEEEEECCCCceeEEec
Q 019326          188 MV--T----EEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTG----------GEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       188 ~~--~----~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      --  .    -..+.+..+.+.+.++... ++-.=..+.|- .+.+|+.-          +.-..+.|+.++........-
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            66  2    1246677777776666544 21111122232 34444321          222246677777655333222


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEc-C--CCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccc
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASAS-S--DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                       .-...|...+|-|.++         .+++-+ .  ..++.+|.+++. ...+..+..+.. ...+.+-|+|.|++++.+
T Consensus       443 -elke~vi~FaWEP~gd---------kF~vi~g~~~k~tvsfY~~e~~-~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  443 -ELKESVIAFAWEPHGD---------KFAVISGNTVKNTVSFYAVETN-IKKPSLVKELDK-KFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             -ecchheeeeeeccCCC---------eEEEEEccccccceeEEEeecC-CCchhhhhhhcc-cccceEEEcCCCcEEEEE
Confidence             3778899999999887         444332 2  357999999842 112223333333 347789999999998876


Q ss_pred             cCC
Q 019326          327 IGD  329 (343)
Q Consensus       327 ~~~  329 (343)
                      .--
T Consensus       511 ~l~  513 (698)
T KOG2314|consen  511 ALV  513 (698)
T ss_pred             Eec
Confidence            543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=1.3e-07  Score=78.69  Aligned_cols=266  Identities=14%  Similarity=0.158  Sum_probs=174.0

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--------
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--------  110 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--------  110 (343)
                      ..-++..+.++  |.+|++....| |.+|.-.....+..+. |  ..|..+.|+|++     ++|.+=+..+        
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~--~~V~~~~fSP~~-----kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H--PDVKYLDFSPNE-----KYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c--CCceecccCccc-----ceeeeeccCCccChhhcc
Confidence            56678889999  88888877665 9999988776555554 3  679999999999     7888776544        


Q ss_pred             -------eEEEEECCCcceeeeeeecc---------------------------------------------ccEEEEEE
Q 019326          111 -------FVSIFDADPFVLLTSVKVHK---------------------------------------------KGVNDLAV  138 (343)
Q Consensus       111 -------~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~v~~i~~  138 (343)
                             .+.+||+.++..+..+....                                             ..|....|
T Consensus       102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi  181 (561)
T COG5354         102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSI  181 (561)
T ss_pred             CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEe
Confidence                   48999998776554443211                                             23445555


Q ss_pred             ecCC--CEEEE-----EeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE--e----------CCcEEEEE
Q 019326          139 HHSG--KLALT-----VGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV--T----------EEKVGIHQ  198 (343)
Q Consensus       139 ~~~~--~~l~~-----~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~----------~~~i~~~d  198 (343)
                      +|.+  ..|+.     .+..+++++|.+..+..+....+- -.-..+.|.+.|+++++-  .          ...+++++
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~  261 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR  261 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence            5543  22222     233556666666655544443332 334458888999887765  1          24577888


Q ss_pred             cccceeEEEecCCcceEEeeecC-CC--eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCe
Q 019326          199 AEDAKLLCELDGKKRILCAAPGE-NG--VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       199 ~~~~~~~~~~~~~~~i~~~~~~~-~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      ++.....-.....++|..++|.+ ++  -+++|-.+-.+.++|++.. ....+   ....=+.+.|+|...         
T Consensus       262 ~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r---------  328 (561)
T COG5354         262 ITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHER---------  328 (561)
T ss_pred             ecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCccc---------
Confidence            77444433335678999999973 33  3444567889999999854 43333   344556678888877         


Q ss_pred             EEEEEcCC---CcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          276 LVASASSD---GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       276 ~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      +++.++-|   |.|-+||.....    ..+..+. ...-.-..|+||+.|.......++.+
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf----~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~  384 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRF----KVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLR  384 (561)
T ss_pred             EEEEecCCccccceEEeccCCce----EEEEEee-cCCceEeeccCCceEEEecCCCcccc
Confidence            88888766   789999998642    1111121 22344567999999988777766644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=4.1e-10  Score=97.27  Aligned_cols=241  Identities=13%  Similarity=0.159  Sum_probs=159.7

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe-eeeEeccCCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS-SLGAIHHHESS   84 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~   84 (343)
                      ...-.+|++...         -.....+.+.||..+|+.+.|+   ...+++++.|-.+..||+.+.. .+..+..- ..
T Consensus        90 ~qkaiiwnlA~s---------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s  159 (1081)
T KOG0309|consen   90 NQKAIIWNLAKS---------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RS  159 (1081)
T ss_pred             cchhhhhhhhcC---------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cc
Confidence            334457777651         1123345667999999999998   6889999999999999998763 44555544 56


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEEccCC
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~~~  162 (343)
                      .-..+.|+-..     ..+.+.+..+.|++||.+. ..++..+++|...|+.++|+.- ...+.+.+.|++|+.||....
T Consensus       160 ~asqVkwnyk~-----p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  160 AASQVKWNYKD-----PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             cCceeeecccC-----cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            77789998776     4555666777899999965 4678889999999999999764 357889999999999998765


Q ss_pred             cee--EEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEEC
Q 019326          163 RRS--FYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       163 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~  239 (343)
                      ..-  .......++..-.+.|-|+-.+                             +-+.. ++.+..-..+.....|+.
T Consensus       235 t~e~~~~vtt~~piw~~r~~Pfg~g~~-----------------------------~mp~~G~n~v~~~~c~n~d~e~n~  285 (1081)
T KOG0309|consen  235 TTESKRTVTTNFPIWRGRYLPFGEGYC-----------------------------IMPMVGGNMVPQLRCENSDLEWNV  285 (1081)
T ss_pred             ccccceeccccCcceeccccccCceeE-----------------------------eccccCCeeeeeccccchhhhhcc
Confidence            422  2222233444444444332111                             11111 111111112233344554


Q ss_pred             CC-CceeEEecccccccEEEEEEEecCC-CCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          240 NS-GKVAYCIEDAHSARVKGIVVLTKND-GGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       240 ~~-~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .+ .+++..+. +|...|....|...+. ..........|+|-|.|..+++|-+.+.
T Consensus       286 ~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  286 FDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             ccCCcceeeec-CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            43 36788898 9999998887765443 1111223348999999999999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=1.6e-07  Score=77.65  Aligned_cols=149  Identities=11%  Similarity=0.077  Sum_probs=117.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-eEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-FVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~  130 (343)
                      |++++..+. |+..+.+...+-.++.  ++ ...|.-..+..+.     +-++.|..|| .+-|+|.++++ +..+...-
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~-~~~VrY~r~~~~~-----e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l  401 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSIQV--GK-KGGVRYRRIQVDP-----EGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL  401 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeEEc--CC-CCceEEEEEccCC-----cceEEeccCCceEEEEecCCce-EEEeeCCc
Confidence            888888886 6677777655543322  33 5678888888776     6899999999 99999999876 44555577


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE-e----CCcEEEEEccccee
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAKL  204 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~  204 (343)
                      +.|.++..+++|+.++++.....+-+.|+.++.....-.. ..-+..+.|+|++++++-+ -    ...|++||+.+++.
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            8999999999999999999999999999999986544433 3668889999999999988 4    34689999999887


Q ss_pred             EEEecC
Q 019326          205 LCELDG  210 (343)
Q Consensus       205 ~~~~~~  210 (343)
                      ...-..
T Consensus       482 y~vTT~  487 (668)
T COG4946         482 YDVTTP  487 (668)
T ss_pred             EEecCC
Confidence            665543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=1.4e-09  Score=87.37  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=109.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      |+++..++...++++....      +..++.....+..-...++.+..+  ....-..+....+.+|....+.+ ..+-+
T Consensus        77 lAv~~~~K~~~~f~~~~~~------~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lG  149 (390)
T KOG3914|consen   77 VAVATSSKQRAVFDYRENP------KGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILG  149 (390)
T ss_pred             EEEEeCCCceEEEEEecCC------CcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhh
Confidence            5667777777788877621      112333333333344455555555  22333345566677777766443 34557


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      | -+.++.++|+|++     ++++++..|..|++-....--.+..+- +|+.-|..++..++. .|++++.|+++++||+
T Consensus       150 h-vSml~dVavS~D~-----~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  150 H-VSMLLDVAVSPDD-----QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI  222 (390)
T ss_pred             h-hhhhheeeecCCC-----CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence            7 8999999999999     899999999999998886655555554 699999999998764 5899999999999999


Q ss_pred             cCCceeEEEEc
Q 019326          160 VRGRRSFYHKI  170 (343)
Q Consensus       160 ~~~~~~~~~~~  170 (343)
                      ++++.+.....
T Consensus       223 ~sgk~L~t~dl  233 (390)
T KOG3914|consen  223 TSGKLLDTCDL  233 (390)
T ss_pred             ccCCcccccch
Confidence            99997755443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=4.1e-07  Score=69.67  Aligned_cols=266  Identities=12%  Similarity=0.046  Sum_probs=140.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      ++.|+..+.+..-|..+       ++. ..+.+     -...|.+-+.- |++++.|...|.+.+.+.++|...+.+...
T Consensus        26 v~igSHs~~~~avd~~s-------G~~-~We~i-----lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   26 VVIGSHSGIVIAVDPQS-------GNL-IWEAI-----LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             EEEecCCceEEEecCCC-------CcE-Eeehh-----hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            56667777776666665       211 11111     12344444444 889999999999999999999988888765


Q ss_pred             CCCCeEE-EEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC-------------------
Q 019326           82 ESSSVTS-LAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS-------------------  141 (343)
Q Consensus        82 ~~~~v~~-l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-------------------  141 (343)
                        ..|.+ -...+++     ..+..|+.|+..+..|.++..++...+...+.-.+-+..|.                   
T Consensus        93 --~~vk~~a~~d~~~-----glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen   93 --ETVKVRAQCDFDG-----GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             --hhhccceEEcCCC-----ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence              23322 2234555     68999999999999999887776665422111111111111                   


Q ss_pred             -----------------------CCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceE-EEE-eCCCCEEEEEeC-----
Q 019326          142 -----------------------GKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASL-IKF-DGSGEKFFMVTE-----  191 (343)
Q Consensus       142 -----------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~-----  191 (343)
                                             +..+..+.-||.+.-+| ..|+++......+++.. -+. .|..+.+....+     
T Consensus       166 ~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~  244 (354)
T KOG4649|consen  166 PYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCA  244 (354)
T ss_pred             CCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEE
Confidence                                   11222333455555555 44455444443333221 111 133233333321     


Q ss_pred             ----CcEEEEEcccceeEEEecCCcceEEeeec-----CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          192 ----EKVGIHQAEDAKLLCELDGKKRILCAAPG-----ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       192 ----~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                          ..-.+|..+++......-.+.  ....++     ...++..++.||.+.+.-.+  +.+.++. .|.+.+..+.--
T Consensus       245 ~~p~~ghL~w~~~~g~t~~vy~~p~--l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--~sl~~~~-s~~g~lq~~~~~  319 (354)
T KOG4649|consen  245 PLPIAGHLLWATQSGTTLHVYLSPK--LRFDLHSPGISYPKLLRRSSGDGKVMILMTS--KSLAEIS-SNGGELQNLEAI  319 (354)
T ss_pred             eccccceEEEEecCCcEEEEEeCcc--cceeccCCCCcchhhhhhhcCCCcEEEEEec--ccccccc-cCCCccceEEEe
Confidence                123344444443322221110  012222     24577788899998887544  2344444 455444443322


Q ss_pred             ecCCCCCCCC--CCeEEEEEcCCCcEEEEeccCc
Q 019326          263 TKNDGGSTAE--NPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       263 ~~~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +-..+...+|  -+.+|+.|+.|..++-||+.+.
T Consensus       320 el~~eIFsSPvii~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  320 ELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             ecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence            2111100011  0116888999999999999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.3e-08  Score=89.14  Aligned_cols=181  Identities=18%  Similarity=0.109  Sum_probs=137.4

Q ss_pred             CCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           42 LSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        42 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      ...++|+++++.+|+-|..+|.|++++.+.. . .....| ...      ...|     .++++|+.||+|.|-.+.+.+
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~-s~~------~~~G-----ey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDH-SSS------ILEG-----EYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCc-c-cccccc-ccc------ccCC-----ceEEEecCCCcEEEeeccCCc
Confidence            5678888999999999999999999998743 3 344445 332      4455     899999999999999998877


Q ss_pred             eeeeeeeccccEEEEEEecC-----CCEEEEEeCCCeEEEEEcc---CCceeEEEEcCCcceEEEEeCCCCEEEEEeCCc
Q 019326          122 LLTSVKVHKKGVNDLAVHHS-----GKLALTVGRDDCLAMVNLV---RGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEK  193 (343)
Q Consensus       122 ~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (343)
                      ...++. ...++.+++++|+     .+.+++|+.-| +.++.-+   ....+......++|.++.|  .|++++-+.|-.
T Consensus       105 ~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G  180 (846)
T KOG2066|consen  105 EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG  180 (846)
T ss_pred             cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC
Confidence            777766 5678999999997     47899999888 7766532   1222334455678888888  578888889999


Q ss_pred             EEEEEcccceeEEEecCC-------cceEEeeecCCCeEEEEeCCCcEEEEECCC
Q 019326          194 VGIHQAEDAKLLCELDGK-------KRILCAAPGENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~-------~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      +++||..+.+.+..++.+       .-...+.|.+...|+.|-.| +|+|..++.
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~~  234 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIKK  234 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEec
Confidence            999999999888877622       12345677778888888665 688888873

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=1e-08  Score=80.04  Aligned_cols=239  Identities=16%  Similarity=0.208  Sum_probs=154.8

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-----eeeeEeccCC-----------CCCeEEEEEeCCCCCCCCce
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-----SSLGAIHHHE-----------SSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-----------~~~v~~l~~~~~~~~~~~~~  102 (343)
                      ....|+++.|.  |.+|++|...|.|.+|.-...     +...+|++|+           ...|..+.|..+++.   ..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r---~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR---NH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc---ce
Confidence            35679999998  899999999999999976543     2334455552           245888888877632   56


Q ss_pred             EEEeeCCCeEEEEECCCcc------------------------------------------eeeee-eeccccEEEEEEe
Q 019326          103 LFSTSADGFVSIFDADPFV------------------------------------------LLTSV-KVHKKGVNDLAVH  139 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~i~~~  139 (343)
                      ++..+.|.+|++|.+....                                          +.+.. ..|.--+.++.|+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            7777899999999874210                                          00111 2466678899999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeEEE-Ec--------CCcceEEEEeCCCC-EEEEE-eCCcEEEEEcccceeE---
Q 019326          140 HSGKLALTVGRDDCLAMVNLVRGRRSFYH-KI--------GKEASLIKFDGSGE-KFFMV-TEEKVGIHQAEDAKLL---  205 (343)
Q Consensus       140 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~~~---  205 (343)
                      .+...++++ .|-.|.+|++......... ..        ..-+++..|+|... .+.-. +.|.|++-|++...+.   
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            888777765 5678999998754422211 11        13467788888644 33333 8999999999853221   


Q ss_pred             ---EEe--c---------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC-ceeEEeccccc------------ccE--
Q 019326          206 ---CEL--D---------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG-KVAYCIEDAHS------------ARV--  256 (343)
Q Consensus       206 ---~~~--~---------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~h~------------~~v--  256 (343)
                         ...  .         --..|..+.|++++.++.+-.--++++||.+.. .++.+++ -|.            ..|  
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~-~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP-MHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec-hHHHHHHHHHhhhhccceee
Confidence               111  1         124577888987654444445578999999754 4666665 342            222  


Q ss_pred             -EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          257 -KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       257 -~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                       ..+.|+.+..         .+.+|+.....-++-+.+
T Consensus       340 kFeisfSgd~~---------~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         340 KFEISFSGDDK---------HVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             eEEEEecCCcc---------cccccccccceeeecccc
Confidence             2445555554         788888877777776443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.06  E-value=1.1e-07  Score=72.81  Aligned_cols=191  Identities=12%  Similarity=0.010  Sum_probs=129.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEE---ecCceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVA---VSGTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      -|+.|+..|...+|...+.       ..    .......|...|+-+.   -....+..++.|.++++.+++.+......
T Consensus        86 ~la~gG~~g~fd~~~~~tn-------~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~  154 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTN-------DG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV  154 (344)
T ss_pred             EEEeccccceeeeecccCc-------cc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee
Confidence            3788889999999998761       11    1112223444333222   12345666788888888888755433333


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeee-e-eeccccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTS-V-KVHKKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      ... .-.+.++++++++     +++++.+....|..|.++. ++.+.. . ....+.-.+..|+.....+|++..||++.
T Consensus       155 h~~-~~~~ns~~~snd~-----~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  155 HNQ-NLTQNSLHYSNDP-----SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA  228 (344)
T ss_pred             ecc-ccceeeeEEcCCC-----ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence            222 2348899999998     8999999999999999854 333222 2 22333456788999999999999999999


Q ss_pred             EEEccCCceeEE------EEcCCcceEEEEeCCCC--EEEEE-eCCcEEEEEcccceeEEEec
Q 019326          156 MVNLVRGRRSFY------HKIGKEASLIKFDGSGE--KFFMV-TEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       156 ~wd~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~d~~~~~~~~~~~  209 (343)
                      +||++.......      ..+.+.+..+.|++.|.  +|+.. .-+.+.+.|+++.+..+.+.
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            999997653322      22457788899998665  44445 67889999999987665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.05  E-value=4.3e-07  Score=80.24  Aligned_cols=229  Identities=13%  Similarity=0.170  Sum_probs=140.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC---CCeE-EEEecCceEEEee---------CCCeEEEEE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL---SPIT-TVAVSGTAAASGG---------TDDTIHLYD   68 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~-~l~~~~~~l~s~~---------~dg~i~iwd   68 (343)
                      ++++++.++.|+.+|.++       ++..-..   ....+.   ..+. +..+.+..++.++         .+|.+..+|
T Consensus       112 ~V~v~~~~g~v~AlD~~T-------G~~~W~~---~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD  181 (488)
T cd00216         112 KVFFGTFDGRLVALDAET-------GKQVWKF---GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYD  181 (488)
T ss_pred             eEEEecCCCeEEEEECCC-------CCEeeee---cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEE
Confidence            467788899999999887       2222111   111110   0011 1122245555554         468899999


Q ss_pred             cCCCeeeeEeccCCCCC-------------------e-EEEEEeCCCCCCCCceEEEeeCCC------------------
Q 019326           69 LSTSSSLGAIHHHESSS-------------------V-TSLAFYTPQNLSVPRNLFSTSADG------------------  110 (343)
Q Consensus        69 ~~~~~~~~~~~~~~~~~-------------------v-~~l~~~~~~~~~~~~~l~s~~~dg------------------  110 (343)
                      ..+|+.+..+.......                   + ...++.+.+     ..++.++.++                  
T Consensus       182 ~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-----g~V~vg~~~g~~~~~~~~~~~~~~~~~~  256 (488)
T cd00216         182 VETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-----NLVYVGTGNGSPWNWGGRRTPGDNLYTD  256 (488)
T ss_pred             CCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-----CEEEEECCCCCCCccCCccCCCCCCcee
Confidence            99999988876431110                   1 012333333     4677777655                  


Q ss_pred             eEEEEECCCcceeeeeeeccccEE------EEEEe----cCCC---EEEEEeCCCeEEEEEccCCceeEEEEcCCcceEE
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVN------DLAVH----HSGK---LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLI  177 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~------~i~~~----~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  177 (343)
                      .|..+|.++++.+..++.-.....      ...+.    -++.   .++.++.+|.+...|.++|+.+.......  ..+
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~  334 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPM  334 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--ccc
Confidence            799999999999888753211111      01111    1232   67788889999999999999887665431  112


Q ss_pred             EEeCCCCEEEE-----------------E-eCCcEEEEEcccceeEEEecCC---------cce--EEeeecCCCeEEEE
Q 019326          178 KFDGSGEKFFM-----------------V-TEEKVGIHQAEDAKLLCELDGK---------KRI--LCAAPGENGVLFTG  228 (343)
Q Consensus       178 ~~~~~~~~~~~-----------------~-~~~~i~~~d~~~~~~~~~~~~~---------~~i--~~~~~~~~~~l~~~  228 (343)
                      ..+| +..++.                 . .++.+.-+|..+++.+.+....         .+.  ..+.. .++.++++
T Consensus       335 ~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g  412 (488)
T cd00216         335 AYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAG  412 (488)
T ss_pred             ccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEE
Confidence            3333 222221                 1 3577888999999988877633         111  11222 56788999


Q ss_pred             eCCCcEEEEECCCCceeEEec
Q 019326          229 GEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      +.||.|+.+|..+|+.+.+.+
T Consensus       413 ~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         413 AADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCCCeEEEEECCCCceeeEEE
Confidence            999999999999999999887

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.05  E-value=8.1e-09  Score=91.51  Aligned_cols=189  Identities=17%  Similarity=0.222  Sum_probs=134.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      +..++-|+-...+..+|+.+.+..+...-. ...|.-++.+  +     +.+++|...|+|.+-|.++.+.++++..|.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR~N--n-----r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMRYN--N-----RNLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeecc-CCceEEEEec--C-----cEEEeecccceEEeecCCcCceeeeeecccc
Confidence            456777777778888999988887776655 5556666654  3     6899999999999999999999999999999


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCC
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGK  211 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  211 (343)
                      .|.++..  .|+.|+++|..+.....                               ..|..++|||++..+.+..+...
T Consensus       219 siSDfDv--~GNlLitCG~S~R~~~l-------------------------------~~D~FvkVYDLRmmral~PI~~~  265 (1118)
T KOG1275|consen  219 SISDFDV--QGNLLITCGYSMRRYNL-------------------------------AMDPFVKVYDLRMMRALSPIQFP  265 (1118)
T ss_pred             ceeeeec--cCCeEEEeecccccccc-------------------------------cccchhhhhhhhhhhccCCcccc
Confidence            9987655  57899999874321100                               12445666666665555544422


Q ss_pred             cceEEeeecC--CCeEEEEeCCCcEEEEEC---CCCc-eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc
Q 019326          212 KRILCAAPGE--NGVLFTGGEDRSITAWDT---NSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       212 ~~i~~~~~~~--~~~l~~~~~dg~i~i~d~---~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                      ....-+.|.|  ...+++++..|...+-|.   .+.. .+..+. .....+.++.++++++         .++.|..+|.
T Consensus       266 ~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~---------alafgd~~g~  335 (1118)
T KOG1275|consen  266 YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGD---------ALAFGDHEGH  335 (1118)
T ss_pred             cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCc---------eEEEecccCc
Confidence            2223333333  357788888899999883   3321 122222 4556699999999988         9999999999


Q ss_pred             EEEEec
Q 019326          286 ICVWDV  291 (343)
Q Consensus       286 i~vwd~  291 (343)
                      |.+|.-
T Consensus       336 v~~wa~  341 (1118)
T KOG1275|consen  336 VNLWAD  341 (1118)
T ss_pred             EeeecC
Confidence            999973

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.05  E-value=1.6e-09  Score=82.29  Aligned_cols=206  Identities=13%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee------------eeeeccccEEEEEEecC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT------------SVKVHKKGVNDLAVHHS  141 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~  141 (343)
                      .+.++..|..-.++.+.++.+.      .|+++..++.+......++.+..            .+.-|.++-.+-+.+-.
T Consensus        27 ~vD~i~~~~d~~~~~~~~v~~~------~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~  100 (319)
T KOG4714|consen   27 LVDEIMQHADVKLSKVSLSAEY------ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT  100 (319)
T ss_pred             chhhcccccceEEEEeechhhh------eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc
Confidence            3334444423346667776654      77888888777666554433322            22223332222233334


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEeCCCCEEEEEe------CCcEEEEEcccceeEEE-ecCCc
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFDGSGEKFFMVT------EEKVGIHQAEDAKLLCE-LDGKK  212 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~~~~~~-~~~~~  212 (343)
                      ++.++++..||.+.+++.+.-..+.....  .......++...++.+.+..      -+..+.|+++..+.+.. .....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            57899999999999999876221111100  01111122233344444332      33444555543322211 11233


Q ss_pred             ceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          213 RILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       213 ~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      .+.+++-++  .+.+++|+.||.+-+||.++...+..+..+|..+|+.+-|+|..++        .|+++++||.+--||
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~--------~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE--------HLFTCSEDGSLWHWD  252 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch--------heeEecCCCcEEEEc
Confidence            478887774  5688999999999999999887665555599999999999998764        799999999999999


Q ss_pred             ccC
Q 019326          291 VRM  293 (343)
Q Consensus       291 ~~~  293 (343)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            985

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.5e-08  Score=79.67  Aligned_cols=244  Identities=15%  Similarity=0.158  Sum_probs=151.2

Q ss_pred             eEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           32 LTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      ++...-+.+|...|..++|+   ..++..++.+..|+|.|+++...+..+..+  ..+++++|.-+..    .++.+|..
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~----h~IYaGl~  256 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDER----HVIYAGLQ  256 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCc----ceeEEecc
Confidence            34445667888999999999   347888999999999999999998888888  8899999998873    78999999


Q ss_pred             CCeEEEEECCCcc-eeeeeee--ccccEEEEEEec------CCCEEEEEeCCCeEEEEEccCCc--ee--EEEEcCCcce
Q 019326          109 DGFVSIFDADPFV-LLTSVKV--HKKGVNDLAVHH------SGKLALTVGRDDCLAMVNLVRGR--RS--FYHKIGKEAS  175 (343)
Q Consensus       109 dg~i~iwd~~~~~-~~~~~~~--~~~~v~~i~~~~------~~~~l~~~~~d~~i~~wd~~~~~--~~--~~~~~~~~~~  175 (343)
                      +|.|.+||++..+ .+..+.+  ...+|..++.-+      .+..++....+  +..|++....  ..  .....++...
T Consensus       257 nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ci  334 (463)
T KOG1645|consen  257 NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICI  334 (463)
T ss_pred             CceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCccee
Confidence            9999999997543 2222221  223454444332      23444444332  4556554322  22  2222234444


Q ss_pred             EEEEeCCCCEEEEE--eCCc------EE-EEEcccceeEEEec--C-CcceE------E-eeecCCC-eEEEEeCCCcEE
Q 019326          176 LIKFDGSGEKFFMV--TEEK------VG-IHQAEDAKLLCELD--G-KKRIL------C-AAPGENG-VLFTGGEDRSIT  235 (343)
Q Consensus       176 ~~~~~~~~~~~~~~--~~~~------i~-~~d~~~~~~~~~~~--~-~~~i~------~-~~~~~~~-~l~~~~~dg~i~  235 (343)
                      .+...+..+.++..  .+.+      +. -.|..++..+...+  + ..+-+      . ++.-+++ .+..|+..+.+.
T Consensus       335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~li  414 (463)
T KOG1645|consen  335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELI  414 (463)
T ss_pred             eeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeE
Confidence            55566655655555  2111      11 12223333332222  1 11000      1 1111234 344566778899


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +||..+.+.++++.  -..+|.+++....+.+.       +|+.-. |..++|+..+.
T Consensus       415 l~D~~s~evvQ~l~--~~epv~Dicp~~~n~~s-------yLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  415 LQDPHSFEVVQTLA--LSEPVLDICPNDTNGSS-------YLALLT-DDRVHIYKNES  462 (463)
T ss_pred             Eeccchhheeeecc--cCcceeecceeecCCcc-------hhhhee-cceEEEEecCC
Confidence            99999999999998  66899999887765433       666665 56788887654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=7.3e-08  Score=84.54  Aligned_cols=173  Identities=11%  Similarity=0.114  Sum_probs=125.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHE   82 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~   82 (343)
                      |+-|+.+|.|++++...             .+ .+...|...    ...|.+++||+.||+|.|-.+.+.+....+.-+ 
T Consensus        52 ~~~GtH~g~v~~~~~~~-------------~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-  112 (846)
T KOG2066|consen   52 FALGTHRGAVYLTTCQG-------------NP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-  112 (846)
T ss_pred             eeeccccceEEEEecCC-------------cc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEecC-
Confidence            67888999999998875             11 122234433    223999999999999999999999888888766 


Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee--eeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT--SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                       .++.+++++|+-..+..+.+++|+.-| +.++.-.-.....  .+..-.++|.++.|.  |++++-++.+| |++||+.
T Consensus       113 -rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  113 -RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             -CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence             899999999993333447899999999 7777643211111  344456799999997  56888887766 9999999


Q ss_pred             CCceeEEEEcCCc-------ceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          161 RGRRSFYHKIGKE-------ASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       161 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      +.+.+.....+..       ...+.|.+ ...++.|...+|++..++
T Consensus       188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  188 TRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             ccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEe
Confidence            9887766554421       33466665 456777777788888777

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.98  E-value=1.6e-08  Score=76.94  Aligned_cols=197  Identities=17%  Similarity=0.185  Sum_probs=116.0

Q ss_pred             eEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccC-CCCCeEEEEEeCCCC-----CCCCceEEEeeCCCeEEEEEC
Q 019326           45 ITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHH-ESSSVTSLAFYTPQN-----LSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        45 v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~l~~~~~~~-----~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      |+.+.+. ...|+++..++.+......++.+....+.. ..++..+++.+..-.     .-..+.++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            5566666 667888888887777666555443322110 012222232211000     001157999999999999998


Q ss_pred             CCcc-eeeeeeeccccEEEEEEecCCCEEEEEe-----CCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-
Q 019326          118 DPFV-LLTSVKVHKKGVNDLAVHHSGKLALTVG-----RDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       118 ~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      +.-. ....+..-...-.+.+....++.+.++.     .-+..+.|+++..+...... ....+.+++-+|..+.++++ 
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg  198 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG  198 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEe
Confidence            6411 1111111111111222223333443332     12446677776544332222 22448889999987776666 


Q ss_pred             -eCCcEEEEEcccceeEEEec--CCcceEEeeecC--CCeEEEEeCCCcEEEEECCC
Q 019326          190 -TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       190 -~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~  241 (343)
                       .+|.+.+||.++......+-  |..++..+-|++  +..|+++++||.+-.||..+
T Consensus       199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             89999999999875433322  889999999984  56899999999999999874

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=3.1e-07  Score=77.39  Aligned_cols=236  Identities=11%  Similarity=0.081  Sum_probs=158.7

Q ss_pred             EEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC
Q 019326           64 IHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK  143 (343)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  143 (343)
                      ...|+.........-... +-.-+-+.|+|.|     .+|++-..-| |.+|--.....++.+. |. .|.-+.|+|..+
T Consensus       192 svfwN~~~n~p~~ie~Re-nWTetyv~wSP~G-----TYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek  262 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERE-NWTETYVRWSPKG-----TYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEK  262 (698)
T ss_pred             EEEccccCCchhhhhhhh-cceeeeEEecCCc-----eEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccc
Confidence            455665543222111111 3445678999999     8999888776 7899888877777776 54 578899999999


Q ss_pred             EEEEEeC-----------CCeEEEEEccCCceeEEEEcC----CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEe
Q 019326          144 LALTVGR-----------DDCLAMVNLVRGRRSFYHKIG----KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       144 ~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  208 (343)
                      +|++-+.           ...+.|||+++|.....+...    ..-..+.||.++++++....+.|.||+..+..++..-
T Consensus       263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~K  342 (698)
T KOG2314|consen  263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKK  342 (698)
T ss_pred             eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccc
Confidence            9999774           257999999999877666552    2234589999999999998899999998886554433


Q ss_pred             c-CCcceEEeeecCCC-eEEEEe-----CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE-
Q 019326          209 D-GKKRILCAAPGENG-VLFTGG-----EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA-  280 (343)
Q Consensus       209 ~-~~~~i~~~~~~~~~-~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-  280 (343)
                      . ....|....|+|.. +||-=.     .--.+.+..+.+++.+++-. -|.-.=..|-|-.+++         +|+.- 
T Consensus       343 slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gd---------yLcvkv  412 (698)
T KOG2314|consen  343 SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGD---------YLCVKV  412 (698)
T ss_pred             ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCc---------EEEEEE
Confidence            3 44668888888754 333211     12346666777666666554 3433333444444444         55532 


Q ss_pred             ---------cCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCce
Q 019326          281 ---------SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF  322 (343)
Q Consensus       281 ---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  322 (343)
                               +.=..+.|+.++.    +.+|+........|...+|-|.|.-
T Consensus       413 dR~tK~~~~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             EeeccccccceEeeEEEEEeec----cCCCceeeecchheeeeeeccCCCe
Confidence                     2223567777765    4567777788888999999998653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=2.1e-08  Score=78.34  Aligned_cols=198  Identities=13%  Similarity=0.196  Sum_probs=136.6

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-----eeeeeeecc------------ccEEEEEEecCC--C
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-----LLTSVKVHK------------KGVNDLAVHHSG--K  143 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~  143 (343)
                      ...|+++.|...|     .++++|...|.|.+|.-....     ....+++|.            ..|..|.|..++  .
T Consensus        26 ad~ItaVefd~tg-----~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          26 ADKITAVEFDETG-----LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cceeeEEEecccc-----ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            5789999999998     799999999999999864322     233455553            357788887654  5


Q ss_pred             EEEEEeCCCeEEEEEccCCce-------------------------e-------------------EEEEcCCcceEEEE
Q 019326          144 LALTVGRDDCLAMVNLVRGRR-------------------------S-------------------FYHKIGKEASLIKF  179 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~-------------------------~-------------------~~~~~~~~~~~~~~  179 (343)
                      .++..+.|.+|++|.+.....                         +                   ..-.++-.+.++.+
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            777888999999998764310                         0                   00011233567888


Q ss_pred             eCCCCEEEEEeCCcEEEEEcccceeEEE---ec-CC-----cceEEeeecC--CCeEEEEeCCCcEEEEECCCCce----
Q 019326          180 DGSGEKFFMVTEEKVGIHQAEDAKLLCE---LD-GK-----KRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKV----  244 (343)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~-~~-----~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~----  244 (343)
                      ..+.+.++++.+-.|.+|++........   ++ |.     .-|++..|++  .+.+.-.+..|.|++-|++....    
T Consensus       181 NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         181 NSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             cCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            8899999999999999999875432221   22 22     3477888885  35677778899999999984321    


Q ss_pred             --eEEe--c-------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          245 --AYCI--E-------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       245 --~~~~--~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                        +...  .       .+-...|..+.|+++++         ++++-+. -++++||++..+
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEeccccc
Confidence              1111  0       12345788899998886         7777765 589999998763

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.96  E-value=1.7e-06  Score=75.77  Aligned_cols=226  Identities=12%  Similarity=0.116  Sum_probs=139.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC--------CCeE-----------------EEEe-----cC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL--------SPIT-----------------TVAV-----SG   52 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~v~-----------------~l~~-----~~   52 (343)
                      +.+|+..|.|+|+-+.+       .+.+...++++...-.        ..|.                 .+++     +|
T Consensus        69 f~SgG~sG~~~v~G~PS-------mr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydG  141 (635)
T PRK02888         69 FWSGGHSGEVRILGLPS-------MRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDG  141 (635)
T ss_pred             EeeCCccceEEEEecCC-------cceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccce
Confidence            67899999999999987       3444444443321100        0111                 1111     15


Q ss_pred             ceEEEeeC-CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEe--CCCCCCCCceEEEee------------------CCCe
Q 019326           53 TAAASGGT-DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFY--TPQNLSVPRNLFSTS------------------ADGF  111 (343)
Q Consensus        53 ~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~~~~~l~s~~------------------~dg~  111 (343)
                      ++|+.-.. ...|-.-+++..++-+.+.-.....+..++|-  |+.     .+++.++                  ..+.
T Consensus       142 r~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t-----~yv~~~~e~~~PlpnDGk~l~~~~ey~~~  216 (635)
T PRK02888        142 RYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRT-----GYVFCNGEFRIPLPNDGKDLDDPKKYRSL  216 (635)
T ss_pred             eEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCc-----cEEEeCcccccccCCCCCEeecccceeEE
Confidence            55655443 44455555555444333322213444445443  333     3333333                  2356


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe----------------------------------------CC
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG----------------------------------------RD  151 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------------------------------------~d  151 (343)
                      +.+.|.++++...++.-.. ....++++|+++++++.+                                        .+
T Consensus       217 vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g  295 (635)
T PRK02888        217 FTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG  295 (635)
T ss_pred             EEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence            7777887777766665432 345677778887776665                                        23


Q ss_pred             CeEEEEEccC-----CceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccccee------------EEEecCCc
Q 019326          152 DCLAMVNLVR-----GRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKL------------LCELDGKK  212 (343)
Q Consensus       152 ~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~------------~~~~~~~~  212 (343)
                      +.|.+.|.++     .+.......+..+..+.++|+|++++++  .+..+.++|+.+.+.            ..+..-..
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            5688888887     4566777888999999999999999998  789999999988653            33443333


Q ss_pred             ceEEeeec-CCCeEEEEeCCCcEEEEECCC
Q 019326          213 RILCAAPG-ENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      .....+|. +++...+-.-|..|..||+.+
T Consensus       376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            33445565 345666677899999999876

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=7.1e-07  Score=76.88  Aligned_cols=199  Identities=11%  Similarity=-0.066  Sum_probs=121.0

Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCE-EEEEeC---CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCE
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL-ALTVGR---DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEK  185 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
                      ..|.+-|.+... .+.+... +......|+|+|+. ++..+.   +..|.++|+.+++.......+.......|+|+|+.
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            356666665543 3333323 37788999999974 554333   35699999998887666555666667889999998


Q ss_pred             EEEE----eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEE-EEeCCC--cEEEEECCCCceeEEecccccccEE
Q 019326          186 FFMV----TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLF-TGGEDR--SITAWDTNSGKVAYCIEDAHSARVK  257 (343)
Q Consensus       186 ~~~~----~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~  257 (343)
                      ++..    .+..|.++++.+++..+...+........|++ ++.|+ +....+  .|++.|+.+++..+...  ....  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~--  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN--  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc--
Confidence            8766    23568888887776443323333333456774 54444 443333  58888888776533322  1111  


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCC---------CcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSD---------GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ...|+|++.         .|+..+..         ..|.+.|+.++..   ..+...   .......|+|||+.++....
T Consensus       323 ~~~~SPDG~---------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~---~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        323 NSSVSTYKN---------YIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTAN---GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CceECCCCC---------EEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCC---CCcCCeEECCCCCEEEEEEc
Confidence            236777776         66655543         2677778877632   222221   12335789999997766554


Q ss_pred             C
Q 019326          329 D  329 (343)
Q Consensus       329 ~  329 (343)
                      .
T Consensus       388 ~  388 (419)
T PRK04043        388 L  388 (419)
T ss_pred             c
Confidence            3

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=2.1e-06  Score=74.08  Aligned_cols=209  Identities=8%  Similarity=-0.026  Sum_probs=125.2

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCce-EEEeeC---CCeEEEEECCCcceeeeeeeccccEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN-LFSTSA---DGFVSIFDADPFVLLTSVKVHKKGVNDLA  137 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~  137 (343)
                      ..|.+-|.+... .+.+...  .....-.|+|++     +. ++..+.   +..|+++|+.+++...... ..+......
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpDG-----~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~  239 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANKE-----QTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSD  239 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC--CCeEeEEECCCC-----CcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeE
Confidence            345555554333 3334444  377889999999     53 554433   3569999998876544433 455566788


Q ss_pred             EecCCCEEEEE-eC--CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCC----cEEEEEcccceeEEEecC
Q 019326          138 VHHSGKLALTV-GR--DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEE----KVGIHQAEDAKLLCELDG  210 (343)
Q Consensus       138 ~~~~~~~l~~~-~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~  210 (343)
                      |+|||+.++.. +.  +..|.++|+.+++...............|+|+|+.++...+.    .|.++|+.+++..+....
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~  319 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH  319 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence            99999766544 33  356888898877654433333333456899999988877433    688888887766443322


Q ss_pred             CcceEEeeec-CCCeEEEEeCC---------CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          211 KKRILCAAPG-ENGVLFTGGED---------RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       211 ~~~i~~~~~~-~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ...  ...|+ +++.++.....         ..|.+.|+.+++. ..+. .. .......|+|++.         +|+..
T Consensus       320 g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT-~~-~~~~~p~~SPDG~---------~I~f~  385 (419)
T PRK04043        320 GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT-AN-GVNQFPRFSSDGG---------SIMFI  385 (419)
T ss_pred             CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC-CC-CCcCCeEECCCCC---------EEEEE
Confidence            111  23676 45655544432         3688889887754 4454 22 2223466777766         66555


Q ss_pred             cCC-Cc--EEEEeccC
Q 019326          281 SSD-GV--ICVWDVRM  293 (343)
Q Consensus       281 ~~d-g~--i~vwd~~~  293 (343)
                      +.+ +.  +.+.++..
T Consensus       386 ~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        386 KYLGNQSALGIIRLNY  401 (419)
T ss_pred             EccCCcEEEEEEecCC
Confidence            433 33  44555543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.94  E-value=4.8e-09  Score=57.50  Aligned_cols=39  Identities=13%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ++++.++++|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=1.2e-05  Score=64.55  Aligned_cols=167  Identities=15%  Similarity=0.064  Sum_probs=112.4

Q ss_pred             eEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc----CCCCCeEEEEEeCCCCCCCCceEEEeeCC--------C
Q 019326           45 ITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH----HESSSVTSLAFYTPQNLSVPRNLFSTSAD--------G  110 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--------g  110 (343)
                      ...+++.  +..|+.+...+ +.++|..+++.......    +.....+.+++.+++     ++.++....        |
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-----~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-----NLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-----CEEEEecCCCcccccccc
Confidence            5566665  56666666655 56669988855443332    125678899999999     555555443        5


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEE-EEeCCCeEEEEEccCCce-e----EEEEcCC---cceEEEEeC
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLAL-TVGRDDCLAMVNLVRGRR-S----FYHKIGK---EASLIKFDG  181 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~i~~wd~~~~~~-~----~~~~~~~---~~~~~~~~~  181 (343)
                      .|..++.. ++... +...-...+.|+|+|+++.|+ +-+..+.|..+++..... +    .......   .+-.++++.
T Consensus       116 ~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~  193 (246)
T PF08450_consen  116 SVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS  193 (246)
T ss_dssp             EEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred             ceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence            57777777 44333 333445678999999998765 566788999999864332 1    1122222   367799999


Q ss_pred             CCCEEEEE-eCCcEEEEEcccceeEEEecCC-cceEEeeec
Q 019326          182 SGEKFFMV-TEEKVGIHQAEDAKLLCELDGK-KRILCAAPG  220 (343)
Q Consensus       182 ~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~i~~~~~~  220 (343)
                      +|+..++. ..+.|.+++.. ++.+..+..+ ..+++++|.
T Consensus       194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            99988877 89999999988 8888877744 688999995

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=6.5e-09  Score=82.17  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=98.4

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      ..+.|.++.|.  ++++..|...|.|..+|++..     .+...+ -| .+.|+++......    .++|++.+.+|+|+
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh-~Ssvtslq~Lq~s----~q~LmaS~M~gkik  324 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YH-DSSVTSLQILQFS----QQKLMASDMTGKIK  324 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-Ec-Ccchhhhhhhccc----cceEeeccCcCcee
Confidence            45678888887  899999999999999999864     233333 35 7899999877633    27899999999999


Q ss_pred             EEECCCcce---eeeeeeccccEEE--EEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCc
Q 019326          114 IFDADPFVL---LTSVKVHKKGVND--LAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKE  173 (343)
Q Consensus       114 iwd~~~~~~---~~~~~~~~~~v~~--i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  173 (343)
                      +||.+.-++   +.++.+|-..-.-  +..++....+++++.|-..++|.++.+..+...+.+..
T Consensus       325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            999977666   8888888653222  33455667889999999999999999988777666543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.92  E-value=5.1e-06  Score=64.73  Aligned_cols=191  Identities=15%  Similarity=0.148  Sum_probs=116.8

Q ss_pred             EEEeCCCCCCCCceEEEeeCCCeEEEEECCCc--ceeeeeee---ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326           89 LAFYTPQNLSVPRNLFSTSADGFVSIFDADPF--VLLTSVKV---HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        89 l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      ++.+++|      .+++.-.|..|.|-..+..  ..+...+.   ....-.-++|+||+..|+.+...|+|+++|+....
T Consensus         3 ~~~~~~G------k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDG------KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCC------cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            4555666      4455556667766655331  12222222   22356789999999999999999999999997543


Q ss_pred             eeEEEE--------cCCcceEEEEeCCC-------CEEEEEeCCcEEEEEccc-----ceeEEEec----CCcceEEeee
Q 019326          164 RSFYHK--------IGKEASLIKFDGSG-------EKFFMVTEEKVGIHQAED-----AKLLCELD----GKKRILCAAP  219 (343)
Q Consensus       164 ~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~d~~~-----~~~~~~~~----~~~~i~~~~~  219 (343)
                      . ....        ....+..+.|.+..       +.++....|.++-|-+..     .+....+.    .+..|.++.+
T Consensus        77 l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   77 L-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             e-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            2 2221        12345556664432       345555888888776532     23333333    4678999999


Q ss_pred             cCC-CeEEEEeC-CC----------cEEEEECCCCceeEEec----------------------------ccccccEEEE
Q 019326          220 GEN-GVLFTGGE-DR----------SITAWDTNSGKVAYCIE----------------------------DAHSARVKGI  259 (343)
Q Consensus       220 ~~~-~~l~~~~~-dg----------~i~i~d~~~~~~~~~~~----------------------------~~h~~~v~~~  259 (343)
                      +++ ++|++|+. ..          -+..|.+-++.+.....                            ......|..|
T Consensus       156 ~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km  235 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM  235 (282)
T ss_pred             cCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence            876 56665552 11          25667654433222110                            0123455666


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ..+|++.         .||+...+|.|.+|++.+..
T Consensus       236 SlSPdg~---------~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  236 SLSPDGS---------LLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EECCCCC---------EEEEEEcCCeEEEEecCcch
Confidence            6666665         99999999999999998864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=7.4e-10  Score=97.73  Aligned_cols=200  Identities=14%  Similarity=0.117  Sum_probs=142.7

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ++...+++.|...-+|++|+  .+.|+.|+..|.|+++++.+|.......+| .++|+.+.-+.+++    ..|.+++..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs----~~Ltsss~S 1165 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGS----TQLTSSSSS 1165 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcc----eeeeecccc
Confidence            45667788899999999999  689999999999999999999999999999 99999999998883    334444444


Q ss_pred             C-eEEEEECC-CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-----cCCcceEEEEeCC
Q 019326          110 G-FVSIFDAD-PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-----IGKEASLIKFDGS  182 (343)
Q Consensus       110 g-~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~  182 (343)
                      . -..+|++. .+...+++..    -.++.|+.....-+.|..-....+||++++......-     ....-++..|+|.
T Consensus      1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             CchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence            3 57789984 4555666553    3567787665444555555678999999987654321     2234477889998


Q ss_pred             CCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          183 GEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       183 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      ...++  .||  .+||.+..+.++.+..-.--..-.|++ +..++..+.     |||+++.+.+...+
T Consensus      1242 D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1242 DTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred             cceEe--eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence            87765  233  579998887777766332222334554 455655543     89999988776655

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.4e-06  Score=77.33  Aligned_cols=205  Identities=17%  Similarity=0.212  Sum_probs=144.4

Q ss_pred             CeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCC-eEEEEEeCCCCCCCCceEEEeeCCC-----eEEEEEC
Q 019326           44 PITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSS-VTSLAFYTPQNLSVPRNLFSTSADG-----FVSIFDA  117 (343)
Q Consensus        44 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~  117 (343)
                      .|+|+.-++..++.|+.+|.|.+.+-. -+.+..++.+ ... |..+......     .+|++.+.|+     .+++|++
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~-~~siv~~L~~~~~~-----~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAY-EQSIVQFLYILNKQ-----NFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheec-chhhhhHhhcccCc-----eEEEEEeecCCCCceEEEEecc
Confidence            788777778999999999998887743 4555788887 555 5555444443     6888888875     4899998


Q ss_pred             CCc------ceee--eeee-----ccccEEEEEEecCCCEEEEEeCCCeEEEEEccC-----CceeEEEEcCCcceEEEE
Q 019326          118 DPF------VLLT--SVKV-----HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR-----GRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       118 ~~~------~~~~--~~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~  179 (343)
                      +..      +++.  .+..     ...++.+++.+.+-+.+++|-.+|.|..+.-.-     .+.........+|+.+++
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            432      3331  1222     245789999999999999999999999884321     123334455688999999


Q ss_pred             eCCCCE-EEEEeCCcEEEEEccccee-EEEec-CCcceEEeeecCCCe-EEEEeCCCcEEEEECCCCceeEEeccccccc
Q 019326          180 DGSGEK-FFMVTEEKVGIHQAEDAKL-LCELD-GKKRILCAAPGENGV-LFTGGEDRSITAWDTNSGKVAYCIEDAHSAR  255 (343)
Q Consensus       180 ~~~~~~-~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~i~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~  255 (343)
                      ..++.. ++++....|.+|.+....+ ...+. +..++.|..++++.. +++++ +..+.+||.....+...+..+|...
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence            998888 4555888999999985442 33344 667889999987655 55444 4579999998777777776566544


Q ss_pred             E
Q 019326          256 V  256 (343)
Q Consensus       256 v  256 (343)
                      .
T Consensus       259 ~  259 (933)
T KOG2114|consen  259 M  259 (933)
T ss_pred             E
Confidence            3

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=8.3e-08  Score=78.70  Aligned_cols=203  Identities=17%  Similarity=0.163  Sum_probs=142.9

Q ss_pred             CCCCCeEEEEec-CceEEEeeCCCeEEEEEcCC---CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEE
Q 019326           40 AHLSPITTVAVS-GTAAASGGTDDTIHLYDLST---SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSI  114 (343)
Q Consensus        40 ~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~i  114 (343)
                      -|.+.|+.+... .+++++++.||.++.|--..   -+.+..+..| ...|.+++.+-++     .++.+++. |..+++
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraH-L~~I~sl~~S~dg-----~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH-LGVILSLAVSYDG-----WLFRSVEDPDHSVKV   80 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHH-HHHHHhhhccccc-----eeEeeccCcccceeE
Confidence            388889988888 89999999999999997543   1345556677 8889999999888     67888777 999999


Q ss_pred             EECCCcceeeeeee--ccccEEEEEEecCC---CEEEEEeCCCeEEEEEccCCcee---EEEEcCCcceEEEEeCCCCEE
Q 019326          115 FDADPFVLLTSVKV--HKKGVNDLAVHHSG---KLALTVGRDDCLAMVNLVRGRRS---FYHKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       115 wd~~~~~~~~~~~~--~~~~v~~i~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  186 (343)
                      +|+.+...+.-++.  ..+.+..+ .++..   ..-++.-.++.+.++|-....+.   ....+-.++.++.+.+.+..+
T Consensus        81 fDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             EEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence            99977655433332  12222211 12211   22233345788999997765422   222345789999999999999


Q ss_pred             EEE-eCCcEEEEEccc------ceeEEEec----------CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          187 FMV-TEEKVGIHQAED------AKLLCELD----------GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~------~~~~~~~~----------~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      ++. ..|.|..|....      .+....++          ......++.++ .+..+.+-+.|..|++++.++++.++.+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            888 789999998873      22222222          23557788888 4677888889999999999998766554


Q ss_pred             c
Q 019326          249 E  249 (343)
Q Consensus       249 ~  249 (343)
                      .
T Consensus       240 D  240 (558)
T KOG0882|consen  240 D  240 (558)
T ss_pred             h
Confidence            3

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=9.1e-07  Score=78.49  Aligned_cols=190  Identities=15%  Similarity=0.164  Sum_probs=130.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCC-eEEEEec--CceEEEeeCCCe-----EEEEEcCCC-
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSP-ITTVAVS--GTAAASGGTDDT-----IHLYDLSTS-   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~--~~~l~s~~~dg~-----i~iwd~~~~-   72 (343)
                      .+|.|+.+|.|.+++-.             ++.++.++++... |..+...  .++|++.+.|+.     +++|+++.- 
T Consensus        37 ~vvigt~~G~V~~Ln~s-------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   37 SVVIGTADGRVVILNSS-------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             eEEEeeccccEEEeccc-------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            57889999998887754             3555667777777 5555444  368888777654     899998743 


Q ss_pred             -----eee---eEec---cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC----cceeeeeeeccccEEEEE
Q 019326           73 -----SSL---GAIH---HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP----FVLLTSVKVHKKGVNDLA  137 (343)
Q Consensus        73 -----~~~---~~~~---~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~  137 (343)
                           .++   +.+.   +.+..++.+++.+.+-     +.++.|-.+|.|..+.-+-    +....-......+|+.++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-----~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-----KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA  178 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-----cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence                 223   1121   1125788999999887     7999999999999986421    111111122356999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCce-eE-EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLVRGRR-SF-YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  209 (343)
                      +..++..++-+..-..|.+|.+....+ .. ....+....|..+++....++++....+.+|+....++...+.
T Consensus       179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            999887634444456799999874331 12 2344567888888888888999999999999987666555554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=6.3e-08  Score=84.19  Aligned_cols=221  Identities=13%  Similarity=0.184  Sum_probs=148.1

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      .+++..+..+  |.-++.++.-| +.+-|++.. ...+-+..-..-.|-...|+|..  ..+..+++.+ ...-.+|++.
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~--a~~~wiVsts-~qkaiiwnlA   99 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHP--AKPYWIVSTS-NQKAIIWNLA   99 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCC--CCceeEEecC-cchhhhhhhh
Confidence            4566667776  78888888877 556676643 22222221113356677788765  2223444444 4455679883


Q ss_pred             C---cceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-eC
Q 019326          119 P---FVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TE  191 (343)
Q Consensus       119 ~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~  191 (343)
                      .   ...-..+.+|...|+.+.|+|+. ..+++++.|-.+..||+++........  -......++|+.....+.+. ..
T Consensus       100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence            2   23444566889999999999875 688999999999999999876543322  24567779998866655555 88


Q ss_pred             CcEEEEEcccce-eEEEec-CCcceEEeeec--CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          192 EKVGIHQAEDAK-LLCELD-GKKRILCAAPG--ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       192 ~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +.+.+||.+.+. ++..++ |-..+..+.|.  ....+.+++.||+|+.||..+.............+|..-.+.|-++
T Consensus       180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence            899999999754 555555 56667777776  3457889999999999998765433222213556677777777665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.85  E-value=3.3e-05  Score=68.74  Aligned_cols=190  Identities=13%  Similarity=0.118  Sum_probs=112.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCe-------EEEEecCceEEEeeCCCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPI-------TTVAVSGTAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~~~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      .|++++.++.|+-+|..+       ++..-..... ......++       ..+++.+..++.++.|+.+.-.|..+|+.
T Consensus        71 ~vyv~s~~g~v~AlDa~T-------Gk~lW~~~~~-~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~  142 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKT-------GKELWKYDPK-LPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKV  142 (527)
T ss_pred             EEEEECCCCcEEEEECCC-------CceeeEecCC-CCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCE
Confidence            467778888888888877       2221111100 00000010       12344567788889999999999999999


Q ss_pred             eeEeccCCCC---CeEEEEEeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeeccc--------------
Q 019326           75 LGAIHHHESS---SVTSLAFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVHKK--------------  131 (343)
Q Consensus        75 ~~~~~~~~~~---~v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~--------------  131 (343)
                      +.........   .+.+--..-++      .++.+..      +|.|..+|.++++.+..+..-..              
T Consensus       143 ~W~~~~~~~~~~~~~tssP~v~~g------~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~  216 (527)
T TIGR03075       143 VWSKKNGDYKAGYTITAAPLVVKG------KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG  216 (527)
T ss_pred             EeecccccccccccccCCcEEECC------EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence            8876532011   12111111123      4555432      68999999999988766542110              


Q ss_pred             -----------------cEE-EEEEecCCCEEEEEeCC-----C-----------eEEEEEccCCceeEEEEc-C-----
Q 019326          132 -----------------GVN-DLAVHHSGKLALTVGRD-----D-----------CLAMVNLVRGRRSFYHKI-G-----  171 (343)
Q Consensus       132 -----------------~v~-~i~~~~~~~~l~~~~~d-----~-----------~i~~wd~~~~~~~~~~~~-~-----  171 (343)
                                       .+. .+++.|...+++.+..+     +           .|.-.|+++|+....+.. +     
T Consensus       217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD  296 (527)
T TIGR03075       217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD  296 (527)
T ss_pred             ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence                             111 24666666666655521     2           678889999997765543 1     


Q ss_pred             ----CcceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeE
Q 019326          172 ----KEASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLL  205 (343)
Q Consensus       172 ----~~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~  205 (343)
                          .....+.+..+++   .++.+ .+|.+.++|..+++.+
T Consensus       297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       297 YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                2233344445666   45555 8999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=1e-08  Score=56.22  Aligned_cols=39  Identities=38%  Similarity=0.635  Sum_probs=35.9

Q ss_pred             CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          242 GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       242 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ++++.++. +|...|++|+|+|++.         +|++++.|+.|++||
T Consensus         1 g~~~~~~~-~h~~~i~~i~~~~~~~---------~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFR-GHSSSINSIAWSPDGN---------FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEE-SSSSSEEEEEEETTSS---------EEEEEETTSEEEEEE
T ss_pred             CeEEEEEc-CCCCcEEEEEEecccc---------cceeeCCCCEEEEEC
Confidence            35778888 9999999999999987         999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.3e-07  Score=84.06  Aligned_cols=176  Identities=16%  Similarity=0.198  Sum_probs=133.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHE   82 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~   82 (343)
                      ++.|+....+..+|+++            .+..+...-..+.|+-|+.++..+.+|...|+|.+-|..+.+.++++..| 
T Consensus       150 ~i~Gg~Q~~li~~Dl~~------------~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH-  216 (1118)
T KOG1275|consen  150 LIMGGLQEKLIHIDLNT------------EKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH-  216 (1118)
T ss_pred             eeecchhhheeeeeccc------------ceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecc-
Confidence            45666666677778776            22222222233458888888999999999999999999999999999999 


Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeC---------CCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSA---------DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDD  152 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~  152 (343)
                      .+.|..+...  |     ++|++++.         |.-|+|||++..+.+..+.-+.++ .-+.|+|.- ..+++++..|
T Consensus       217 s~siSDfDv~--G-----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  217 SGSISDFDVQ--G-----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             ccceeeeecc--C-----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccc
Confidence            9999888765  3     57888876         445899999998887777766655 457788864 6788899999


Q ss_pred             eEEEEEccC---Cc--eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEc
Q 019326          153 CLAMVNLVR---GR--RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQA  199 (343)
Q Consensus       153 ~i~~wd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~  199 (343)
                      ...+.|..+   ..  ..........+..++++++++.++.+ .+|.|.+|.-
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            999999432   21  11222233558889999999999999 9999999973

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.9e-08  Score=80.57  Aligned_cols=198  Identities=9%  Similarity=0.051  Sum_probs=145.5

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---cceeeeeeeccccEEEEEEecCCCEEEEEeC-CCeEEEEE
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---FVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVN  158 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd  158 (343)
                      ...|+.+.....      +++++++.||.++.|--..   -+.+..+..|...|.+++.+.++..+.+.+. |..++++|
T Consensus         9 rd~i~hv~~tka------~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    9 RDVITHVFPTKA------KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             cceeeeEeeehh------heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            667777766554      5999999999999998643   2445566778899999999999999999887 99999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCC----EEEEE--eCCcEEEEEcccce-eEEEec--CCcceEEeeecC-CCeEEEE
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGE----KFFMV--TEEKVGIHQAEDAK-LLCELD--GKKRILCAAPGE-NGVLFTG  228 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~i~~~d~~~~~-~~~~~~--~~~~i~~~~~~~-~~~l~~~  228 (343)
                      ++.-..+....+...+..+.|.....    .+++.  .++.+.++|-.... ....+.  |..+|.++.+.+ +..+++.
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            98877665555554444444433222    44444  78899999977544 222222  889999999874 5678888


Q ss_pred             eCCCcEEEEECCC------CceeEEec--------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          229 GEDRSITAWDTNS------GKVAYCIE--------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       229 ~~dg~i~i~d~~~------~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ...|.|.-|....      .+....+.        .-......++.|+|++.         .+.+-+.|..|++++++++
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccc
Confidence            8899999998772      11111221        02345678899999987         8999999999999999998


Q ss_pred             c
Q 019326          295 I  295 (343)
Q Consensus       295 ~  295 (343)
                      +
T Consensus       234 k  234 (558)
T KOG0882|consen  234 K  234 (558)
T ss_pred             h
Confidence            4

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.79  E-value=2.3e-05  Score=64.20  Aligned_cols=217  Identities=21%  Similarity=0.186  Sum_probs=135.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-----
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-----  126 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----  126 (343)
                      ++.|+.|..+| +.+++.........+...  ..|..+...+.-     +.|++-+ |+.++++++.........     
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~-----~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPEL-----NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEeccc-----CEEEEEc-CCccEEEEchhhccccccccccc
Confidence            78899999998 899998433333333322  449999999887     4555443 599999998654433311     


Q ss_pred             ---------eeccccEEEEE--EecCCCEEEEEeCCCeEEEEEccCC-----ceeEEEEcCCcceEEEEeCCCCEEEEEe
Q 019326          127 ---------KVHKKGVNDLA--VHHSGKLALTVGRDDCLAMVNLVRG-----RRSFYHKIGKEASLIKFDGSGEKFFMVT  190 (343)
Q Consensus       127 ---------~~~~~~v~~i~--~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (343)
                               ......+...+  -.+.+...++......|.+|.....     +.......+..+..++|.  ++.++.+.
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                     11223444444  1223344444555568988888653     456677788999999998  67788887


Q ss_pred             CCcEEEEEcccceeEEEecC-------------CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeE--Eeccccccc
Q 019326          191 EEKVGIHQAEDAKLLCELDG-------------KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAY--CIEDAHSAR  255 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~~-------------~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~h~~~  255 (343)
                      .+...+.|+.++.....+..             ..++..+...++.+|++-  +..-.+.|. .|++.+  .+.  =...
T Consensus       156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~--W~~~  230 (275)
T PF00780_consen  156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ--WSSA  230 (275)
T ss_pred             CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEE--cCCc
Confidence            88899999997765544321             123445555445555543  333333343 454443  222  2345


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      +.++++...           +|+..+.+ .|.||++.++..
T Consensus       231 p~~~~~~~p-----------yli~~~~~-~iEV~~~~~~~l  259 (275)
T PF00780_consen  231 PQSVAYSSP-----------YLIAFSSN-SIEVRSLETGEL  259 (275)
T ss_pred             hhEEEEECC-----------EEEEECCC-EEEEEECcCCcE
Confidence            667777544           77777765 499999999853

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=4.2e-05  Score=61.45  Aligned_cols=212  Identities=16%  Similarity=0.206  Sum_probs=139.7

Q ss_pred             ceEEEeeCCCe-EEEEEcCCCeeeeEeccCCCCCe--EEEEEeCCCCCCCCceEEEeeC-----CCeEEEEECC-Cccee
Q 019326           53 TAAASGGTDDT-IHLYDLSTSSSLGAIHHHESSSV--TSLAFYTPQNLSVPRNLFSTSA-----DGFVSIFDAD-PFVLL  123 (343)
Q Consensus        53 ~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-~~~~~  123 (343)
                      ..++.+-.-|. ..+||..+++....+... .+.-  -.-.|++++     ++|++.-.     .|.|-|||.. +.+.+
T Consensus        18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG-----~~LytTEnd~~~g~G~IgVyd~~~~~~ri   91 (305)
T PF07433_consen   18 EAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDG-----RLLYTTENDYETGRGVIGVYDAARGYRRI   91 (305)
T ss_pred             eEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCC-----CEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence            34444444443 567888888777666443 2211  136799999     77777644     4789999998 77888


Q ss_pred             eeeeeccccEEEEEEecCCCEEEEEeC------------------CCeEEEEEccCCceeEEEEcC-----CcceEEEEe
Q 019326          124 TSVKVHKKGVNDLAVHHSGKLALTVGR------------------DDCLAMVNLVRGRRSFYHKIG-----KEASLIKFD  180 (343)
Q Consensus       124 ~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~  180 (343)
                      .++..|.-.-..+.+.|+++.|+++--                  +-.+.+.|..+|+.+....++     -.+..+++.
T Consensus        92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~  171 (305)
T PF07433_consen   92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD  171 (305)
T ss_pred             eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence            888888777788899999977776632                  334566777888877665553     357789999


Q ss_pred             CCCCEEEEE-eCCc-----EEEEEcccceeEEEec--------CCcceEEeeecC-CCeE-EEEeCCCcEEEEECCCCce
Q 019326          181 GSGEKFFMV-TEEK-----VGIHQAEDAKLLCELD--------GKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       181 ~~~~~~~~~-~~~~-----i~~~d~~~~~~~~~~~--------~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~  244 (343)
                      ++|..++.. ..+.     -.+.-.+.++.+..+.        ....+-+++++. +..+ +++=..+.+.+||..+++.
T Consensus       172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~  251 (305)
T PF07433_consen  172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL  251 (305)
T ss_pred             CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence            999888877 3332     2222233333333333        346788999984 4444 5555688999999999998


Q ss_pred             eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          245 AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       245 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      +....   -..+..++..+.+          +++|.+.-
T Consensus       252 ~~~~~---l~D~cGva~~~~~----------f~~ssG~G  277 (305)
T PF07433_consen  252 LGSVP---LPDACGVAPTDDG----------FLVSSGQG  277 (305)
T ss_pred             eeccc---cCceeeeeecCCc----------eEEeCCCc
Confidence            77655   2345556555543          56666543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.77  E-value=5.8e-06  Score=63.52  Aligned_cols=187  Identities=10%  Similarity=0.016  Sum_probs=120.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      ..+++.|+..+.+.--|.++|+.+++-...  ..|.+-+..- +     ++++.|+..|.+++.+.+++...+.+.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~vv-g-----dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIVV-G-----DFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEEE-C-----CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            578888999999999999999888766544  4555544442 3     5899999999999999999988888775433


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcce-EEEEeC-CCCEEEEEeCCcEEEEEcccc--eeEEE
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEAS-LIKFDG-SGEKFFMVTEEKVGIHQAEDA--KLLCE  207 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~i~~~d~~~~--~~~~~  207 (343)
                      -=......+++..+..++.|++.+..|.++..++...+.++.+. .-++.| ++..+++...|.+.--.....  ..+..
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~  174 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWA  174 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehh
Confidence            22234457788999999999999999999999888877665443 245555 444444445665555444443  22333


Q ss_pred             ecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          208 LDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       208 ~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                      ....+++.+--..-+..+..+.-||.+.-+| ..|+.+.+
T Consensus       175 ~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  175 ATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             hhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEe
Confidence            3333333321111123444445556555555 34444443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.77  E-value=4.3e-09  Score=93.10  Aligned_cols=195  Identities=17%  Similarity=0.130  Sum_probs=139.9

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD  152 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  152 (343)
                      +....|..+ +...+|++|+-..     +.|+.|+..|.|++|++.+|........|...|+.+.-+.+|..+++.+.-.
T Consensus      1092 r~w~~frd~-~~~fTc~afs~~~-----~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDE-TALFTCIAFSGGT-----NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             ccchhhhcc-ccceeeEEeecCC-----ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence            445667778 8899999999888     8999999999999999999999999999999999999999998777665533


Q ss_pred             --eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe-c----CCcceEEeeecCCCe
Q 019326          153 --CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL-D----GKKRILCAAPGENGV  224 (343)
Q Consensus       153 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~-~----~~~~i~~~~~~~~~~  224 (343)
                        -..+|++..--  .....-..-.++.|+...+.-+.+ ......+||++++..+.++ .    ....-++..|++...
T Consensus      1166 ~PlsaLW~~~s~~--~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG--GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             CchHHHhcccccc--CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence              36789876411  111111345667887766555555 6678899999998877663 2    223346777876554


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      |+.  .||.  +||.+..+.+..+. -....+.+ .|+|.+.         .++.-+     -|||+++-.
T Consensus      1244 LIl--ndGv--LWDvR~~~aIh~FD-~ft~~~~G-~FHP~g~---------eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1244 LIL--NDGV--LWDVRIPEAIHRFD-QFTDYGGG-GFHPSGN---------EVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             eEe--eCce--eeeeccHHHHhhhh-hheecccc-cccCCCc---------eEEeec-----hhhhhHHHH
Confidence            443  3553  69999888777776 33322222 4777776         666655     489998764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.75  E-value=3e-05  Score=69.00  Aligned_cols=233  Identities=11%  Similarity=0.106  Sum_probs=140.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC--CCeEE-EEecCceEEEeeC------CCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL--SPITT-VAVSGTAAASGGT------DDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~~~------dg~i~iwd~~~~   72 (343)
                      +++.++.|+.|..+|..+       ++..-.....   .+.  ..+++ -...++.++.+..      +|.|..+|.++|
T Consensus       122 ~v~v~t~dg~l~ALDa~T-------Gk~~W~~~~~---~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG  191 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKT-------GKVVWSKKNG---DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG  191 (527)
T ss_pred             EEEEEcCCCEEEEEECCC-------CCEEeecccc---cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence            467788899999999877       3332221111   111  11221 1122455666543      689999999999


Q ss_pred             eeeeEeccCCCC------------------------------CeE-EEEEeCCCCCCCCceEEEeeC-----CC------
Q 019326           73 SSLGAIHHHESS------------------------------SVT-SLAFYTPQNLSVPRNLFSTSA-----DG------  110 (343)
Q Consensus        73 ~~~~~~~~~~~~------------------------------~v~-~l~~~~~~~~~~~~~l~s~~~-----dg------  110 (343)
                      +.+..+..-...                              .+. .+++.+..     .+++.+..     ++      
T Consensus       192 ~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-----~lvy~~tGnp~p~~~~~r~gd  266 (527)
T TIGR03075       192 KLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-----NLIYFGTGNPSPWNSHLRPGD  266 (527)
T ss_pred             ceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-----CeEEEeCCCCCCCCCCCCCCC
Confidence            988876532111                              011 22444443     34444441     12      


Q ss_pred             -----eEEEEECCCcceeeeeeeccccEE---------EEEEecCCC---EEEEEeCCCeEEEEEccCCceeEEEEc---
Q 019326          111 -----FVSIFDADPFVLLTSVKVHKKGVN---------DLAVHHSGK---LALTVGRDDCLAMVNLVRGRRSFYHKI---  170 (343)
Q Consensus       111 -----~i~iwd~~~~~~~~~~~~~~~~v~---------~i~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~---  170 (343)
                           .|.-.|+++++....++.....+.         -+....+|+   .++.+..+|.+++.|-++++.+.....   
T Consensus       267 nl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~  346 (527)
T TIGR03075       267 NLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDT  346 (527)
T ss_pred             CccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCC
Confidence                 677788999999888875322111         122334565   788999999999999999987521100   


Q ss_pred             -------C----Ccc----------------------------eEEEEeCCCCEEEEE-eC-------------------
Q 019326          171 -------G----KEA----------------------------SLIKFDGSGEKFFMV-TE-------------------  191 (343)
Q Consensus       171 -------~----~~~----------------------------~~~~~~~~~~~~~~~-~~-------------------  191 (343)
                             .    .++                            ..++++|+..++++. .+                   
T Consensus       347 ~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~  426 (527)
T TIGR03075       347 VNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYL  426 (527)
T ss_pred             cccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCcee
Confidence                   0    000                            115566665555444 22                   


Q ss_pred             --------------CcEEEEEcccceeEEEecCCcceE-EeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          192 --------------EKVGIHQAEDAKLLCELDGKKRIL-CAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       192 --------------~~i~~~d~~~~~~~~~~~~~~~i~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                                    +.+.-+|+.+++...+.+...+.. ......+.+++.++.+|.++.+|.++|+.+.+.+
T Consensus       427 ~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       427 GAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             ccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                          347778888888888776443321 1111255678888889999999999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=1.3e-06  Score=77.62  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CceEEEee----CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee
Q 019326           52 GTAAASGG----TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK  127 (343)
Q Consensus        52 ~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  127 (343)
                      ..+|++++    ..|.|.||- ++|++.+...-.  -.+++++|+|..     -.|+.|-.-|.+.+|...+.+......
T Consensus        27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--~hatSLCWHpe~-----~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--VHATSLCWHPEE-----FVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             CceeEEEEecCCCCceEEEEe-cCCCCCcccccc--eehhhhccChHH-----HHHhhccccceeEEEecCCceeeeecc
Confidence            34455443    458888884 567655433322  346679999987     678888889999999998877666667


Q ss_pred             eccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326          128 VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      .|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            899999999999999999999999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.69  E-value=9e-05  Score=59.61  Aligned_cols=199  Identities=15%  Similarity=0.146  Sum_probs=133.0

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCC-eEEEEECCCcceeeeeeeccccE--EEEEEecCCCEEEEEeC-----CCeEEE
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADG-FVSIFDADPFVLLTSVKVHKKGV--NDLAVHHSGKLALTVGR-----DDCLAM  156 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~~~~~-----d~~i~~  156 (343)
                      ....++.+|..    +..++.+-.-| ...+||..+++....+....+.-  -.-.|+++|++|++.-.     .|.|-+
T Consensus         6 RgH~~a~~p~~----~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    6 RGHGVAAHPTR----PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cccceeeCCCC----CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence            44567788855    25677777766 47789999998887776443322  24679999999998654     588999


Q ss_pred             EEcc-CCceeEEEEc-CCcceEEEEeCCCCEEEEEeCC-------------------cEEEEEcccceeEEEec-----C
Q 019326          157 VNLV-RGRRSFYHKI-GKEASLIKFDGSGEKFFMVTEE-------------------KVGIHQAEDAKLLCELD-----G  210 (343)
Q Consensus       157 wd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~-----~  210 (343)
                      ||.. +.+.+..+.. .-....+.+.|+++.|+++..|                   .+.+.|..+++++.+..     |
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            9998 4444444443 3456678899999888888322                   26667888888887743     5


Q ss_pred             CcceEEeeecCCCeEEEEe-CCCc-------EEEEECCCCceeEEec------ccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          211 KKRILCAAPGENGVLFTGG-EDRS-------ITAWDTNSGKVAYCIE------DAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       211 ~~~i~~~~~~~~~~l~~~~-~dg~-------i~i~d~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                      ...+..+++.....++.|. ..|.       |.+++.  ++.+..+.      ..-...+-+|+++.++.         +
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~---------~  230 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGR---------L  230 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCC---------E
Confidence            5678888887555555443 2221       334433  23232222      13457899999999886         6


Q ss_pred             EEEE-cCCCcEEEEeccCccccC
Q 019326          277 VASA-SSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       277 l~s~-~~dg~i~vwd~~~~~~~~  298 (343)
                      ++.. =.-+.+.+||..++....
T Consensus       231 ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  231 IAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             EEEECCCCCEEEEEECCCCCEee
Confidence            6544 456789999999985443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.67  E-value=8.7e-05  Score=58.06  Aligned_cols=189  Identities=16%  Similarity=0.170  Sum_probs=115.2

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccC------CCCCeEEEEEeCCCCCCC-CceEEEeeCCCeEE
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHH------ESSSVTSLAFYTPQNLSV-PRNLFSTSADGFVS  113 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~~-~~~l~s~~~dg~i~  113 (343)
                      ..=.-++|+  +..||.+...|+|+++|+.. ..+..+...      ...+|..|.|.+...... ...|++-...|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            345678998  78899999999999999985 333333322      146777787775541110 13677778888888


Q ss_pred             EEECC-----Ccceeeeeee---ccccEEEEEEecCCCEEEEEeCCCe-----------EEEEEccCCceeEEEEcCCcc
Q 019326          114 IFDAD-----PFVLLTSVKV---HKKGVNDLAVHHSGKLALTVGRDDC-----------LAMVNLVRGRRSFYHKIGKEA  174 (343)
Q Consensus       114 iwd~~-----~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-----------i~~wd~~~~~~~~~~~~~~~~  174 (343)
                      -|-+.     ..+...++..   +...|.++.++|..++|++|+....           +..|.+-.+.+          
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P----------  192 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP----------  192 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC----------
Confidence            77653     2333444432   3568999999999988888875322           23333322221          


Q ss_pred             eEEEEeCCCCEEEEEeCCc------EEEEEcccceeEEE-ecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          175 SLIKFDGSGEKFFMVTEEK------VGIHQAEDAKLLCE-LDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~------i~~~d~~~~~~~~~-~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                             ..+.+....++.      ..++.+.+.+.... -.....|..|..+ ++..|++...+|.|.+|++.+-+...
T Consensus       193 -------yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  193 -------YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             -------cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence                   111111111111      12222222222211 1245678888888 56799999999999999999877766


Q ss_pred             Eec
Q 019326          247 CIE  249 (343)
Q Consensus       247 ~~~  249 (343)
                      .+.
T Consensus       266 ~W~  268 (282)
T PF15492_consen  266 SWK  268 (282)
T ss_pred             ccc
Confidence            665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.66  E-value=8.3e-05  Score=64.23  Aligned_cols=249  Identities=13%  Similarity=0.107  Sum_probs=123.9

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      ..|+.+|+..... ..++.... .....+....-....+.++  ++++++ +.||.-.++.....+....      +.-.
T Consensus         2 ~~i~~~~~~~~~~-~~dg~~~~-l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~------G~g~   72 (443)
T PF04053_consen    2 NEIRTANLKNISE-IKDGERLP-LSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF------GSGL   72 (443)
T ss_dssp             TEEEEEE--S------TTS-B-----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE------EE-S
T ss_pred             CceEEEECcCCCc-cCCCceee-EEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc------Ccee
Confidence            4577777765321 11122222 2223333355567888888  666666 5578888888544443322      2334


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                      ...|.+.+      .+++-...++|.++.--..+....++.. ..+..|-.   |..|...+.+ .|.+||..+++.+..
T Consensus        73 ~~vw~~~n------~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~  141 (443)
T PF04053_consen   73 SFVWSSRN------RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRR  141 (443)
T ss_dssp             EEEE-TSS------EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEE
T ss_pred             EEEEecCc------cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeE
Confidence            67888855      6777777889999743232333344322 22343433   7777766554 899999999998887


Q ss_pred             EEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccc-----------eeEEEec-CCcceEEeeecCCCeEEEEeCCCcEE
Q 019326          168 HKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDA-----------KLLCELD-GKKRILCAAPGENGVLFTGGEDRSIT  235 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~  235 (343)
                      ..... +..+.|++++++++...+..+.+++....           ..+..+. -...|.+.+|..+ .++-.+.. .|+
T Consensus       142 i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lk  218 (443)
T PF04053_consen  142 IDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLK  218 (443)
T ss_dssp             ESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEE
T ss_pred             EecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEE
Confidence            77664 89999999999999998888888775543           0122222 2566777777544 33333333 565


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .  +..|+ ...+. .-..++.=+.+.+...         .+.....|+.|..+.++..
T Consensus       219 Y--l~~Ge-~~~i~-~ld~~~yllgy~~~~~---------~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  219 Y--LVNGE-TGIIA-HLDKPLYLLGYLPKEN---------RLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             E--EETTE-EEEEE-E-SS--EEEEEETTTT---------EEEEE-TT--EEEEE--HH
T ss_pred             E--EEcCC-cceEE-EcCCceEEEEEEccCC---------EEEEEECCCCEEEEEECHH
Confidence            5  33333 22222 1234556666666444         7888888988888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.65  E-value=4.5e-05  Score=67.18  Aligned_cols=229  Identities=14%  Similarity=0.088  Sum_probs=143.6

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCC------------CCCeE---------------EEEEeCCCCCCCCceEEEe
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHE------------SSSVT---------------SLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~---------------~l~~~~~~~~~~~~~l~s~  106 (343)
                      .|.||+..|.++|+-+.+++.+..+.-..            +..|.               .-.+|....-.++++|+.-
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin  147 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN  147 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence            38899999999999999887766552110            11111               1111111111334677776


Q ss_pred             eC-CCeEEEEECCCcceeeeeeec-cccEEEEE-------------------EecCCCEEEEEe-CCCeEEEEEccCCce
Q 019326          107 SA-DGFVSIFDADPFVLLTSVKVH-KKGVNDLA-------------------VHHSGKLALTVG-RDDCLAMVNLVRGRR  164 (343)
Q Consensus       107 ~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~-------------------~~~~~~~l~~~~-~d~~i~~wd~~~~~~  164 (343)
                      .. +..|...+++.+++-+.+.-. ...+..++                   +.|+|+.+...+ ..+.+.+.|..+.+.
T Consensus       148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV  227 (635)
T PRK02888        148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV  227 (635)
T ss_pred             cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence            64 556777777666654444311 11222222                   344554443222 246677888888877


Q ss_pred             eEEEEcCCcceEEEEeCCCCEEEEEe-----------------------------------------CCcEEEEEccc--
Q 019326          165 SFYHKIGKEASLIKFDGSGEKFFMVT-----------------------------------------EEKVGIHQAED--  201 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~i~~~d~~~--  201 (343)
                      ......+.....+.+++++.++++..                                         ++.|.+.|.++  
T Consensus       228 ~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~  307 (635)
T PRK02888        228 AWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA  307 (635)
T ss_pred             EEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence            77777777777788888888877662                                         13477777776  


Q ss_pred             ---ceeEEEecCCcceEEeeecC-CCeEE-EEeCCCcEEEEECCCCce------------eEEecccccccEEEEEEEec
Q 019326          202 ---AKLLCELDGKKRILCAAPGE-NGVLF-TGGEDRSITAWDTNSGKV------------AYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       202 ---~~~~~~~~~~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~~~~~------------~~~~~~~h~~~v~~~~~~~~  264 (343)
                         .+.+..+.-......+.+++ +++++ ++..+.+|.++|+.+.+.            ..+.+  -.......+|.++
T Consensus       308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~  385 (635)
T PRK02888        308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGR  385 (635)
T ss_pred             cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCC
Confidence               45666666666677788874 55554 555689999999987553            34444  2334455677666


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +.         ...|--.|..|-.||+..
T Consensus       386 G~---------aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        386 GN---------AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CC---------EEEeEeecceeEEEehHH
Confidence            54         788888999999999987

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.65  E-value=6.9e-06  Score=71.58  Aligned_cols=149  Identities=16%  Similarity=0.137  Sum_probs=99.4

Q ss_pred             eEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee
Q 019326           45 ITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL  123 (343)
Q Consensus        45 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  123 (343)
                      .+|++-++.+++.|+.-|.+.+|+-..++....-. +. .+.+..+..+++.     .++++|+..|.|.++.+....+.
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~-~~~~~~~~vs~~e-----~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA-TGITCVRSVSSVE-----YLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCc-cceEEEEEecchh-----HhhhhhcCCceEEeehhhccCCC
Confidence            44555559999999999999999987765443322 23 4666777788877     68888899999999987543221


Q ss_pred             ---e--ee-eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-----eeEEEEcCCcceEEEEeCCCCEEEEEeCC
Q 019326          124 ---T--SV-KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-----RSFYHKIGKEASLIKFDGSGEKFFMVTEE  192 (343)
Q Consensus       124 ---~--~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (343)
                         .  .. +.|...|++++|++++..+++|...|+|..-.+....     .......+..  .+.++--..+++++.-.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~--IVQlD~~q~~LLVStl~  189 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE--IVQLDYLQSYLLVSTLT  189 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc--eEEeecccceehHhhhh
Confidence               1  11 2367899999999999999999999999998887721     1111122233  34444444555555434


Q ss_pred             cEEEEEccc
Q 019326          193 KVGIHQAED  201 (343)
Q Consensus       193 ~i~~~d~~~  201 (343)
                      ...+++.+.
T Consensus       190 r~~Lc~tE~  198 (726)
T KOG3621|consen  190 RCILCQTEA  198 (726)
T ss_pred             hhheeecch
Confidence            444455443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.60  E-value=9e-05  Score=62.11  Aligned_cols=224  Identities=15%  Similarity=0.137  Sum_probs=130.1

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCC--CCCceEEEeeC----------CCeEEEEECCCc----ceeee
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNL--SVPRNLFSTSA----------DGFVSIFDADPF----VLLTS  125 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~l~s~~~----------dg~i~iwd~~~~----~~~~~  125 (343)
                      ..|++.|..+.+.+..+.-.....+.+++...-...  ....+|+.|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468899988888777665443456666554331100  01267887765          288999999873    12222


Q ss_pred             e--eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEccc
Q 019326          126 V--KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-RSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAED  201 (343)
Q Consensus       126 ~--~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~  201 (343)
                      +  ....++|.+++-- ++. |+++. ++.|.+|++...+ ..............+....+++++++ ....+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            1  2346789998877 344 44433 4799999999888 55555555555666666667788888 677777765443


Q ss_pred             -ceeEEEec---CCcceEEeeec-CCCeEEEEeCCCcEEEEECCC-------Cc-eeEE-ecccccccEEEE---EEEec
Q 019326          202 -AKLLCELD---GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNS-------GK-VAYC-IEDAHSARVKGI---VVLTK  264 (343)
Q Consensus       202 -~~~~~~~~---~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~-~~~~-~~~~h~~~v~~~---~~~~~  264 (343)
                       ...+..+.   ....++++.+- +++.+++++.+|.+.++....       +. .+.. ........|+++   .+.+.
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~  238 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPR  238 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeec
Confidence             22232222   45667888776 556999999999999998763       22 2221 221245677877   33332


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          265 NDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                       ......+....++-++.+|.|.+.
T Consensus       239 -~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  239 -SGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             -CCCCcccccceEEEEecCCEEEEE
Confidence             000001112358888899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.60  E-value=5.2e-05  Score=63.55  Aligned_cols=193  Identities=12%  Similarity=0.149  Sum_probs=125.4

Q ss_pred             CeEEEEECCCcceeeeeeeccc-cEEEEE---EecC----CCEEEEEeC---------C-CeEEEEEccCC-----c--e
Q 019326          110 GFVSIFDADPFVLLTSVKVHKK-GVNDLA---VHHS----GKLALTVGR---------D-DCLAMVNLVRG-----R--R  164 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~-~v~~i~---~~~~----~~~l~~~~~---------d-~~i~~wd~~~~-----~--~  164 (343)
                      +.|++.|..+.+.+.++.-... .+.+++   +..+    ..++++|..         . |.|.++++...     +  .
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3688889888887777664332 444444   3322    457776654         2 88999999884     2  2


Q ss_pred             eEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccce-eEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCC
Q 019326          165 SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK-LLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      +.....++++.+++--  +..++++.++.+.+|++...+ ....-.  .+..+.++.. -+++++.|+.-..+.++..+.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-FKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-ETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEec-cccEEEEEEcccCEEEEEEEc
Confidence            3445567778777766  455888889999999999887 444333  4446677766 356899999888888875543


Q ss_pred             -CceeEEec-ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc---c---CCCcccccccccceeE
Q 019326          242 -GKVAYCIE-DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK---E---KPLPLAEAKTNSRLTC  313 (343)
Q Consensus       242 -~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~---~~~~~~~~~~~~~i~~  313 (343)
                       ...+..+. +.....++++.+.++++         .++.+..+|.+.++.......   .   .......++.+..|++
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~---------~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~  229 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDED---------TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS  229 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSS---------EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCc---------EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence             22233322 23456788888886655         899999999999998874311   1   2234567788888988


Q ss_pred             E
Q 019326          314 L  314 (343)
Q Consensus       314 ~  314 (343)
                      +
T Consensus       230 ~  230 (321)
T PF03178_consen  230 F  230 (321)
T ss_dssp             E
T ss_pred             E
Confidence            8

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.55  E-value=0.00027  Score=57.66  Aligned_cols=189  Identities=15%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             CceEEEe--eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-Ccceeeeee-
Q 019326           52 GTAAASG--GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTSVK-  127 (343)
Q Consensus        52 ~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-  127 (343)
                      +++++..  +-...|.|-|+...+.+.++...  + ...+  .|.+    +.-|.+-+.||.+.-..++ .++...... 
T Consensus       106 gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~i--yP~~----~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  106 GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLI--YPSG----NRGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEE--EEEE----TTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             CcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEE--EecC----CCceEEEecCCceEEEEECCCCCEeEeecc
Confidence            4444443  22345777777777877777644  2 2222  2333    1468899999999999886 455442221 


Q ss_pred             ---eccccE-EEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------------CCcceEEEEeCCCCEEEEE-
Q 019326          128 ---VHKKGV-NDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------------GKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       128 ---~~~~~v-~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-  189 (343)
                         ....++ ..-++...+..++-.+.+|.|+--|+...........             ++.-..+++++..+++++. 
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence               111222 2233444555666678899999999877664333222             1223458888877766666 


Q ss_pred             eCC----------cEEEEEcccceeEEEecCCcceEEeeecC-C-CeEEEE-eCCCcEEEEECCCCceeEEec
Q 019326          190 TEE----------KVGIHQAEDAKLLCELDGKKRILCAAPGE-N-GVLFTG-GEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       190 ~~~----------~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~-~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      ..+          .|.++|+.+++.+..+....++.++..+. . -+|++. ..++.+.+||..+|+.+.++.
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            321          38889999999999999777888888873 3 366554 468999999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.54  E-value=7.1e-05  Score=69.48  Aligned_cols=193  Identities=10%  Similarity=0.064  Sum_probs=125.4

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-  118 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-  118 (343)
                      .+.|.++.|.  ++.++.+..+|.|.+-|..+....  +-+.....|.+++|+|+.     +.++..+..+++.+-.-. 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~De-----e~l~liT~~~tll~mT~~f  140 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDE-----ELLALITGRQTLLFMTKDF  140 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCC-----cEEEEEeCCcEEEEEeccc
Confidence            3679999988  778888888999999988765432  222226889999999999     788888888887765420 


Q ss_pred             ---C-------------------cceeeeeeecc---------------------ccEEEEEEecCCCEEEEEe-----C
Q 019326          119 ---P-------------------FVLLTSVKVHK---------------------KGVNDLAVHHSGKLALTVG-----R  150 (343)
Q Consensus       119 ---~-------------------~~~~~~~~~~~---------------------~~v~~i~~~~~~~~l~~~~-----~  150 (343)
                         .                   |+.-..+++..                     +.=.+|.|--||.++++..     .
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence               0                   11111222111                     1123588999999988832     2


Q ss_pred             CCeEEEEEccCCceeE-EEEcCCcceEEEEeCCCCEEEEE----eCCcEEEEEccc---ceeEEEec-CCcceEEeeec-
Q 019326          151 DDCLAMVNLVRGRRSF-YHKIGKEASLIKFDGSGEKFFMV----TEEKVGIHQAED---AKLLCELD-GKKRILCAAPG-  220 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~---~~~~~~~~-~~~~i~~~~~~-  220 (343)
                      ...|++||-+ |..-. ..+....-.+++|-|.|..+++.    +++.|.+|.-+.   +.....++ ...++..++|+ 
T Consensus       221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence            3789999976 43211 12223445679999999999887    456688887443   22222223 33448999998 


Q ss_pred             CCCeEEE---EeCCCcEEEEECCCC
Q 019326          221 ENGVLFT---GGEDRSITAWDTNSG  242 (343)
Q Consensus       221 ~~~~l~~---~~~dg~i~i~d~~~~  242 (343)
                      ++..|++   ......|++|-+.+-
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecCe
Confidence            4556665   344445999988764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.53  E-value=6.1e-05  Score=64.15  Aligned_cols=230  Identities=15%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-------------------------------------------
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-------------------------------------------  121 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------  121 (343)
                      .|+.+.|.+..     ..|++|...|.|.+|.....+                                           
T Consensus         3 ~v~~vs~a~~t-----~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPET-----LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTT-----TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecCCC-----ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence            57889999887     689999999999988652110                                           


Q ss_pred             eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC---------cceEEEEe-----CCC---C
Q 019326          122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK---------EASLIKFD-----GSG---E  184 (343)
Q Consensus       122 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~  184 (343)
                      +..-+....++|++++.+.- .+++.|..+|.+.+.|+|....+.......         .+.++.|.     .++   -
T Consensus        78 P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            11112224578999998754 489999999999999998877776654433         35566664     233   3


Q ss_pred             EEEEE-eCCcEEEEEccc---ceeE----EEe-cCCcceEEeeec-------------------CC---CeEEEEeCCCc
Q 019326          185 KFFMV-TEEKVGIHQAED---AKLL----CEL-DGKKRILCAAPG-------------------EN---GVLFTGGEDRS  233 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~---~~~~----~~~-~~~~~i~~~~~~-------------------~~---~~l~~~~~dg~  233 (343)
                      .++++ ..|.+.+|.+.-   +...    ... .+..++..+..-                   .+   .-++....+..
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            56666 789999997641   2111    111 244454443321                   00   12334445678


Q ss_pred             EEEEECCCCceeEEecccccccEEEEEEEe-----cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccc
Q 019326          234 ITAWDTNSGKVAYCIEDAHSARVKGIVVLT-----KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTN  308 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  308 (343)
                      ++++...+.+...... ........+.+.+     .+.         .|++-..+|.|+++.+...+......+......
T Consensus       237 irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~---------~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGY---------CLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEE---------EEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             eEEEeCCCCcccceee-ccccccceEEEEeecccCCce---------EEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            9999998877665554 3333344444432     222         788889999999999987643332222221122


Q ss_pred             cceeEEEcCCCCceeccccCCC
Q 019326          309 SRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       309 ~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ..+....++++|.++.+....+
T Consensus       307 ~~~~~ssis~~Gdi~~~~gpsE  328 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPSE  328 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSSE
T ss_pred             ccccccEECCCCCEEEEeCccc
Confidence            2344566677777766654433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.5e-05  Score=64.89  Aligned_cols=221  Identities=13%  Similarity=0.110  Sum_probs=127.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe-eeeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS-SLGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~   78 (343)
                      |..++.++.|+|.|+++            ...+..+..| .++.+++|+   .++++.|...|.|.+||+...+ .+..+
T Consensus       209 l~~asl~nkiki~dlet------------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~  275 (463)
T KOG1645|consen  209 LGLASLGNKIKIMDLET------------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL  275 (463)
T ss_pred             eeeeccCceEEEEeccc------------ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence            56788899999999987            4556666666 889999998   6789999999999999998653 22223


Q ss_pred             cc-CCCCCeEEEEEeCCCCC-CCCceEEEeeCCCeEEEEECC----CcceeeeeeeccccEEEEEEecCCCEEEEEeCC-
Q 019326           79 HH-HESSSVTSLAFYTPQNL-SVPRNLFSTSADGFVSIFDAD----PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-  151 (343)
Q Consensus        79 ~~-~~~~~v~~l~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-  151 (343)
                      .. -...+|..++..+.... ..+.+|+....+  +..|++.    ...++..+. ..+...++..++..+.++..... 
T Consensus       276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~  352 (463)
T KOG1645|consen  276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSN  352 (463)
T ss_pred             hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeecCccceEEEEecCC
Confidence            22 11345555544333210 001244443332  4456552    222222222 24556666666655544444332 


Q ss_pred             C------eEEE-EEccCCceeEEEEc---CC------cceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcc
Q 019326          152 D------CLAM-VNLVRGRRSFYHKI---GK------EASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKR  213 (343)
Q Consensus       152 ~------~i~~-wd~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~  213 (343)
                      .      .+.. -|-..|..+.....   +.      .-..+.-.++.++++..  ..+.+.+||..+.+.++++....+
T Consensus       353 pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~ep  432 (463)
T KOG1645|consen  353 PNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEP  432 (463)
T ss_pred             CCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccCcc
Confidence            1      0111 12222322221111   10      01112223445555555  667899999999999999998899


Q ss_pred             eEEeeec--CC-CeEEEEeCCCcEEEEECC
Q 019326          214 ILCAAPG--EN-GVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       214 i~~~~~~--~~-~~l~~~~~dg~i~i~d~~  240 (343)
                      +..++..  ++ .+|++- .|..++||..+
T Consensus       433 v~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  433 VLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             eeecceeecCCcchhhhe-ecceEEEEecC
Confidence            9998876  33 355544 46678888654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.50  E-value=0.00037  Score=56.91  Aligned_cols=216  Identities=14%  Similarity=0.143  Sum_probs=121.0

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC----------CCeEEEEECCCcceeeeeeeccc
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----------DGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      +.+.++|.++++.+..+...   -.-.+..+|++     +.+++++.          .-.|.+||..+.+....+.-...
T Consensus        17 ~rv~viD~d~~k~lGmi~~g---~~~~~~~spdg-----k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k   88 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG---FLGNVALSPDG-----KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK   88 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE---SSEEEEE-TTS-----SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred             ceEEEEECCCCcEEEEeecc---cCCceeECCCC-----CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence            46888998888888777643   33346678888     56665432          34688999988777766553322


Q ss_pred             -------cEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc-c
Q 019326          132 -------GVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE-D  201 (343)
Q Consensus       132 -------~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~  201 (343)
                             ....++++.++++++....  -..|.+.|+..++.+.....++.....-..+. .+...|.||.+..+.+. .
T Consensus        89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen   89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR-GFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT-EEEEEETTSCEEEEEETST
T ss_pred             chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCC-ceEEEecCCceEEEEECCC
Confidence                   1223566777777666543  35677788877777666665554433332222 23333355555544443 2


Q ss_pred             ceeEEEec---------------------------CCcceE---------------------------------Eeeec-
Q 019326          202 AKLLCELD---------------------------GKKRIL---------------------------------CAAPG-  220 (343)
Q Consensus       202 ~~~~~~~~---------------------------~~~~i~---------------------------------~~~~~-  220 (343)
                      |+...+..                           ..+.|.                                 -++++ 
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~  247 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA  247 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred             CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence            22211110                           001111                                 12222 


Q ss_pred             CCCeEEEEe---CCC-------cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE-EcCCCcEEEE
Q 019326          221 ENGVLFTGG---EDR-------SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS-ASSDGVICVW  289 (343)
Q Consensus       221 ~~~~l~~~~---~dg-------~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~vw  289 (343)
                      ..+.|++--   .+|       .|-++|+.+++.+.++.  -..++.+|.++.+...        +|++ ...++.|.+|
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P--------~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKP--------LLYALSAGDGTLDVY  317 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS---------EEEEEETTTTEEEEE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCc--------EEEEEcCCCCeEEEE
Confidence            122222211   111       36677888888888887  3457889999887652        5554 4568999999


Q ss_pred             eccCccc
Q 019326          290 DVRMAIK  296 (343)
Q Consensus       290 d~~~~~~  296 (343)
                      |..+++.
T Consensus       318 D~~tGk~  324 (342)
T PF06433_consen  318 DAATGKL  324 (342)
T ss_dssp             ETTT--E
T ss_pred             eCcCCcE
Confidence            9999853

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.49  E-value=4.6e-05  Score=66.64  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee-----
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL-----   75 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~-----   75 (343)
                      |+.|++-|.+++|+-...       .    .......+-.+.+..+..+  ..++|.|+..|.|.++-++.....     
T Consensus        48 l~~GsS~G~lyl~~R~~~-------~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   48 LAMGSSAGSVYLYNRHTG-------E----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEecccceEEEEecCch-------h----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            788999999999997752       1    1122222333444445555  677888889999999988764321     


Q ss_pred             eEec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----ceeeeeeeccccEEEEEEec
Q 019326           76 GAIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----VLLTSVKVHKKGVNDLAVHH  140 (343)
Q Consensus        76 ~~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~  140 (343)
                      .... .| ...|++++|++++     ..+++|...|+|.+-.++..    -..+.+-...+.|..+....
T Consensus       117 t~~d~~~-~~rVTal~Ws~~~-----~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  117 TPCDKSH-KCRVTALEWSKNG-----MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             ccccccC-CceEEEEEecccc-----cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence            1122 24 7899999999999     89999999999999888762    12233333456676676653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=2e-05  Score=67.65  Aligned_cols=111  Identities=15%  Similarity=0.094  Sum_probs=79.6

Q ss_pred             eEEEEec---CceEEEe----eCCCe----EEEEEcCCCeee--eEec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           45 ITTVAVS---GTAAASG----GTDDT----IHLYDLSTSSSL--GAIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        45 v~~l~~~---~~~l~s~----~~dg~----i~iwd~~~~~~~--~~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      ..++.|+   +..+.|.    +.+|.    -++|++..++..  .... .. .+.|.+++++|+.     +.|+.|+.||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL-~s~v~~ca~sp~E-----~kLvlGC~Dg  281 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPL-PSQVICCARSPSE-----DKLVLGCEDG  281 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEec-CCcceEEecCccc-----ceEEEEecCC
Confidence            4566776   4555543    23343    345666554322  2222 23 6889999999999     8999999999


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      +|.+||...+.  ..+....-.++.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus       282 SiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  282 SIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             eEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99999987642  2233344567899999999999999999999999986544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.45  E-value=1.3e-07  Score=81.14  Aligned_cols=194  Identities=18%  Similarity=0.149  Sum_probs=132.7

Q ss_pred             CCCeEEEEec----CceEEEeeCCCeEEEEEcCCCeee-eE-eccCCCCCeEEEEEeCCCCCCCCceEEEeeC----CCe
Q 019326           42 LSPITTVAVS----GTAAASGGTDDTIHLYDLSTSSSL-GA-IHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----DGF  111 (343)
Q Consensus        42 ~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~-~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----dg~  111 (343)
                      ...+.|+++.    ...++.|..+|.|-+-.+.....- ++ ..++ ....++++|++-.    .+.|++|-.    |..
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~-ar~Ct~lAwneLD----tn~LAagldkhrnds~  130 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGY-ARPCTSLAWNELD----TNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccc-ccccccccccccc----HHHHHhhhhhhcccCC
Confidence            4567888876    257899999999999887654222 33 3445 7889999999875    256776643    568


Q ss_pred             EEEEECCCc--ceee--eeee-ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeC-CCCE
Q 019326          112 VSIFDADPF--VLLT--SVKV-HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDG-SGEK  185 (343)
Q Consensus       112 i~iwd~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~  185 (343)
                      +.|||+.++  .+..  .+.+ -.....+++|..+.+.+++|.....+.++|++.............+..+.++| ...+
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNY  210 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCc
Confidence            999999765  2222  2222 23456689999888999999999999999998543222222234566788888 7778


Q ss_pred             EEEEeCCcEEEEE-cccce-eEEEecC-----CcceEEeeecC--CCeEEEEeC-CCcEEEEECC
Q 019326          186 FFMVTEEKVGIHQ-AEDAK-LLCELDG-----KKRILCAAPGE--NGVLFTGGE-DRSITAWDTN  240 (343)
Q Consensus       186 ~~~~~~~~i~~~d-~~~~~-~~~~~~~-----~~~i~~~~~~~--~~~l~~~~~-dg~i~i~d~~  240 (343)
                      ++...++.+.+|| .++.+ ++..+.+     ...+..++|.+  .+.+++... .++|+++|+.
T Consensus       211 ~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  211 FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            7777999999999 44332 2222222     23488888884  346666655 5789999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.45  E-value=0.00048  Score=59.49  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=68.6

Q ss_pred             EEEEccccee----EEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCC
Q 019326          195 GIHQAEDAKL----LCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGS  269 (343)
Q Consensus       195 ~~~d~~~~~~----~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  269 (343)
                      .+|+....+.    +..++.+..+.|+++++ +..++.|+.||.|.+||...+..... .  +.-.++.++|+|++.   
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~ga---  312 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGA---  312 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e--ecccceEEEEcCCCc---
Confidence            4566654432    33455888999999984 57999999999999999986643322 3  456788999999998   


Q ss_pred             CCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          270 TAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       270 ~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                            +++.|+..|.+.+||+.-.
T Consensus       313 ------i~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  313 ------IFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ------EEEEEcCCceEEEEEeecC
Confidence                  9999999999999999754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.41  E-value=0.00018  Score=66.97  Aligned_cols=195  Identities=14%  Similarity=0.197  Sum_probs=127.4

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc---
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL---  159 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~---  159 (343)
                      ...|.++.|..+.     ..++.+..+|.|.+-|..+... ...-.-...|.+++|+||+..++..+..+++.+-+-   
T Consensus        68 d~~i~s~~fl~d~-----~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADT-----NSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             CcceEEEEEeccc-----ceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            4689999999888     7888999999999998877442 222234568999999999999999988888766542   


Q ss_pred             -cCCcee-------------------EEEE----------------------cCCcceEEEEeCCCCEEEEE-----eC-
Q 019326          160 -VRGRRS-------------------FYHK----------------------IGKEASLIKFDGSGEKFFMV-----TE-  191 (343)
Q Consensus       160 -~~~~~~-------------------~~~~----------------------~~~~~~~~~~~~~~~~~~~~-----~~-  191 (343)
                       -..+.+                   ..+.                      ....-..+.|.-+|+++++.     .+ 
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence             111111                   0000                      01122348999999999984     34 


Q ss_pred             CcEEEEEcccceeEEE-ecCCcceEEeeecC-CCeEEEE---eCCCcEEEEECCC---CceeEEecccccccEEEEEEEe
Q 019326          192 EKVGIHQAEDAKLLCE-LDGKKRILCAAPGE-NGVLFTG---GEDRSITAWDTNS---GKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~-~~~~~~i~~~~~~~-~~~l~~~---~~dg~i~i~d~~~---~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      ..+++||.+ +.+-.. .+..+--.+++|-| |..+++-   ..|+.|.+|..+-   ++....++ .....|..++|+.
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNS  299 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecC
Confidence            789999987 332211 11233345677765 4455543   3466798887542   22222233 3344599999999


Q ss_pred             cCCCCCCCCCCeEEEE---EcCCCcEEEEeccCc
Q 019326          264 KNDGGSTAENPYLVAS---ASSDGVICVWDVRMA  294 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s---~~~dg~i~vwd~~~~  294 (343)
                      ++.         .|+.   ......|++|-+.+-
T Consensus       300 ~sd---------iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  300 NSD---------ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCC---------ceeeeecccccceEEEEEecCe
Confidence            987         7776   445556999998764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.38  E-value=0.0008  Score=55.09  Aligned_cols=219  Identities=15%  Similarity=0.158  Sum_probs=122.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe-
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI-   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-   78 (343)
                      +|+.|+.+| |++++....      ..   ...+.    +..+|..+...  -+.|++- .|+.+.++++......... 
T Consensus         9 ~L~vGt~~G-l~~~~~~~~------~~---~~~i~----~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDP------SK---PTRIL----KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             EEEEEECCC-EEEEEecCC------cc---ceeEe----ecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccc
Confidence            588999988 899998321      01   11111    22338888877  2444443 3599999998865433311 


Q ss_pred             ------------ccCCCCCeEEEE--EeCCCCCCCCceEEEeeCCCeEEEEECCCc-----ceeeeeeeccccEEEEEEe
Q 019326           79 ------------HHHESSSVTSLA--FYTPQNLSVPRNLFSTSADGFVSIFDADPF-----VLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        79 ------------~~~~~~~v~~l~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~i~~~  139 (343)
                                  .......+...+  -...+     ...+.......|.+|.....     +..+++. -...+.+++|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-----~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~  147 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-----SRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL  147 (275)
T ss_pred             cccccccccccccccccCCeeEEeecccccc-----ceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe
Confidence                        111123444444  11222     33344444558888887542     3445555 34678899998


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC-------------cceEEEEeCCCCEEEEEeCCcEEEEEcccceeEE
Q 019326          140 HSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK-------------EASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLC  206 (343)
Q Consensus       140 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  206 (343)
                        ++.++.+..+ ...+.|+.++..........             ++..+.. +++.+++ +.+..-...|. .|+..+
T Consensus       148 --~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll-~~~~~g~fv~~-~G~~~r  221 (275)
T PF00780_consen  148 --GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLL-CYDNIGVFVNK-NGEPSR  221 (275)
T ss_pred             --CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEE-EecceEEEEcC-CCCcCc
Confidence              4467777654 48889998776544432221             1222222 3344444 43433333343 343333


Q ss_pred             --EecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          207 --ELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       207 --~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                        .+.=...+..+.+ ...++++-.. +.|.||++.+++.++.+.
T Consensus       222 ~~~i~W~~~p~~~~~-~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  222 KSTIQWSSAPQSVAY-SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             ccEEEcCCchhEEEE-ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence              3333345556666 3446666555 559999999999988887

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.37  E-value=8e-05  Score=49.98  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             eEEEEec------CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           45 ITTVAVS------GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        45 v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      |++|++.      .+.|++|+.|..||+|+-+  +.+.++...  ..|++|.-...+      .++.+..+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~--~~v~~L~~~~~~------~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET--DKVTSLCSLGGG------RFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc--cceEEEEEcCCC------EEEEEecCCEEEEEeCc
Confidence            5666664      3789999999999999854  677777765  788889887765      79999999999999863


Q ss_pred             CcceeeeeeeccccEEEEEEec-C--C-CEEEEEeCCCeEE
Q 019326          119 PFVLLTSVKVHKKGVNDLAVHH-S--G-KLALTVGRDDCLA  155 (343)
Q Consensus       119 ~~~~~~~~~~~~~~v~~i~~~~-~--~-~~l~~~~~d~~i~  155 (343)
                        +.+...+. +..+.++++.. +  | ..|++|-.+|.|-
T Consensus        72 --~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 --QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              34455553 33456665543 2  2 5788998888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.34  E-value=0.00078  Score=53.40  Aligned_cols=196  Identities=13%  Similarity=0.171  Sum_probs=117.5

Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc-ccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK-KGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      .+.+- ...++.|+|.|+.+    .++++....+.|..++.+ ++.++.+.... +..-.|++..++.++++--.++.+.
T Consensus        16 ~l~g~-~~e~SGLTy~pd~~----tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGI-LDELSGLTYNPDTG----TLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT---S-EEEEEEETTTT----EEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             ECCCc-cCCccccEEcCCCC----eEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            44455 56699999999862    567777778899888874 67887776443 4678899988887777766789999


Q ss_pred             EEEccCCc----e--eEEEEc------CCcceEEEEeCCCCEEEEE-eCCcEEEEEccc---ceeEEEec---------C
Q 019326          156 MVNLVRGR----R--SFYHKI------GKEASLIKFDGSGEKFFMV-TEEKVGIHQAED---AKLLCELD---------G  210 (343)
Q Consensus       156 ~wd~~~~~----~--~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~---~~~~~~~~---------~  210 (343)
                      ++++....    .  ......      ......++|++.++.++++ ......+|.++.   ...+....         .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            99984322    1  112222      1346889999998888888 777777777764   22221111         2


Q ss_pred             CcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEec--cc-cc-----ccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          211 KKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIE--DA-HS-----ARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       211 ~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~-h~-----~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      -..+..+.+++  +.+++....+..|..+| .+|+++..+.  .+ |.     ...-+|++.+++.          |+..
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----------LYIv  238 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----------LYIV  238 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------------EEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC----------EEEE
Confidence            23467777774  46788888899999999 5688766554  11 11     3578899998874          5555


Q ss_pred             cCCCcEEEE
Q 019326          281 SSDGVICVW  289 (343)
Q Consensus       281 ~~dg~i~vw  289 (343)
                      ++-+..++|
T Consensus       239 sEpNlfy~f  247 (248)
T PF06977_consen  239 SEPNLFYRF  247 (248)
T ss_dssp             ETTTEEEEE
T ss_pred             cCCceEEEe
Confidence            566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.34  E-value=0.0011  Score=56.70  Aligned_cols=215  Identities=13%  Similarity=0.057  Sum_probs=123.0

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCe-------------------------------------------eeeEe
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSS-------------------------------------------SLGAI   78 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------~~~~~   78 (343)
                      .|+.+.|.  ...|++|...|.|.+|.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            46777777  5678888888988888654221                                           11112


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee--e------ccccEEEEEEec-----CC---
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK--V------HKKGVNDLAVHH-----SG---  142 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~i~~~~-----~~---  142 (343)
                      +.. .++|++++.+.-|      +++.|..+|.+.|.|++....+..-.  .      ....|+++.|.-     |+   
T Consensus        83 ~~~-~g~vtal~~S~iG------Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   83 DAK-QGPVTALKNSDIG------FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             ----S-SEEEEEE-BTS------EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             ecc-CCcEeEEecCCCc------EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            334 6899999999777      99999999999999998877665522  1      223677888862     22   


Q ss_pred             CEEEEEeCCCeEEEEEccC-C-c--ee---EEE-EcCCcceEEE-EeCC---------------------CCEEEEEeCC
Q 019326          143 KLALTVGRDDCLAMVNLVR-G-R--RS---FYH-KIGKEASLIK-FDGS---------------------GEKFFMVTEE  192 (343)
Q Consensus       143 ~~l~~~~~d~~i~~wd~~~-~-~--~~---~~~-~~~~~~~~~~-~~~~---------------------~~~~~~~~~~  192 (343)
                      -.+++|...|.+.+|.+.- . .  .+   ... ....++..+. ++.+                     ..+++++.+.
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            5788999999999998752 1 1  11   111 1223333222 3211                     1255566899


Q ss_pred             cEEEEEcccceeEEEecCC-cceEEeeec------CCCeEEEEeCCCcEEEEECCCCceeEEecccc----cccEEEEEE
Q 019326          193 KVGIHQAEDAKLLCELDGK-KRILCAAPG------ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH----SARVKGIVV  261 (343)
Q Consensus       193 ~i~~~d~~~~~~~~~~~~~-~~i~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h----~~~v~~~~~  261 (343)
                      .++++...+.+...+.... .....+.+-      .+..|++-..+|.|++|.+..-+.+..+. .+    ...+....+
T Consensus       236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~-l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS-LPPPLDSRRLSSSSI  314 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--SS---HHHHTT-EE
T ss_pred             ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc-CCCccccccccccEE
Confidence            9999999988776655422 222222231      34577778899999999999988887776 32    234455566


Q ss_pred             EecCC
Q 019326          262 LTKND  266 (343)
Q Consensus       262 ~~~~~  266 (343)
                      +++++
T Consensus       315 s~~Gd  319 (395)
T PF08596_consen  315 SRNGD  319 (395)
T ss_dssp             -TTS-
T ss_pred             CCCCC
Confidence            76665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.33  E-value=0.00081  Score=53.07  Aligned_cols=191  Identities=14%  Similarity=0.084  Sum_probs=126.3

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEEeC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~  150 (343)
                      .+.++......-...+.|..++     .++-+.+.-|  .|+.+|+.+++.......... ---.++...+ +.....=.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g-----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk  108 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDG-----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWK  108 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETT-----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESS
T ss_pred             EEEECCCCCcccCccEEecCCC-----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEec
Confidence            4445543324456678886676     5777777766  799999999987766553322 2233444433 34444556


Q ss_pred             CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CC---cceEEeeecCCC
Q 019326          151 DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GK---KRILCAAPGENG  223 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~---~~i~~~~~~~~~  223 (343)
                      ++...+||..+.+.+..+..+..-..++  .++..++.+ ....+..+|..+.+..+.+.   ..   ..++-+.+.++.
T Consensus       109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~  186 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK  186 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE
T ss_pred             CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE
Confidence            8999999999999988888888777777  467777777 88999999999988877776   22   345667776666


Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEecc-----------c---ccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIED-----------A---HSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ..+=.-....|...|..+|+....+..           .   ...-.++|++.+..+        .+++||
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~--------~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD--------RLFVTG  249 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT--------EEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC--------EEEEEe
Confidence            666666778899999999998876640           0   134689999998876        266676

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=98.29  E-value=0.0018  Score=55.36  Aligned_cols=271  Identities=17%  Similarity=0.182  Sum_probs=157.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec------C-ceEEEeeCCCeEEEEEcCCC--
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS------G-TAAASGGTDDTIHLYDLSTS--   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-~~l~s~~~dg~i~iwd~~~~--   72 (343)
                      +|++|+..|.++||+....+.     +........   .-..||..++..      . ..||. -.-..+.+|.+...  
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~-----~~~~lllE~---~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEF-----QPEDLLLET---QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG  109 (418)
T ss_pred             EEEEeccccEEEEEccCCCCC-----CCccEEEEE---ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC
Confidence            689999999999999854211     111111111   235788888763      2 33444 45677888887321  


Q ss_pred             e-------eeeEeccC-CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCE
Q 019326           73 S-------SLGAIHHH-ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL  144 (343)
Q Consensus        73 ~-------~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  144 (343)
                      .       .+..+..| -......+++-|-+......++..=+.||.+.+|+-+.......+.. ---...+.+.+....
T Consensus       110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDs  188 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDS  188 (418)
T ss_pred             CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCE
Confidence            1       12222222 12344455555544332236888999999999999876443333332 112234678888889


Q ss_pred             EEEEeCCCeEEEEEccC--------------------Cc---eeEEEEcCCcceEEE---EeCCCCEEEEEeCCcEEEEE
Q 019326          145 ALTVGRDDCLAMVNLVR--------------------GR---RSFYHKIGKEASLIK---FDGSGEKFFMVTEEKVGIHQ  198 (343)
Q Consensus       145 l~~~~~d~~i~~wd~~~--------------------~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~d  198 (343)
                      |++++.+..+.-|....                    ++   ....+..+..+..+.   ++.....+++-....+.+.+
T Consensus       189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~  268 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLK  268 (418)
T ss_pred             EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEc
Confidence            99999988888886521                    11   112334445544433   33344455555777787777


Q ss_pred             cccceeEEEecCCcceEEeeec-------CC--CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC-CC
Q 019326          199 AEDAKLLCELDGKKRILCAAPG-------EN--GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND-GG  268 (343)
Q Consensus       199 ~~~~~~~~~~~~~~~i~~~~~~-------~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~  268 (343)
                      . +|......+......|++..       ++  ..++.++.++++.||.-  .+.++.-. ....+| ++....-.. .+
T Consensus       269 ~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~-l~~~PV-al~v~~~~~~~G  343 (418)
T PF14727_consen  269 D-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQ-LPHVPV-ALSVANFNGLKG  343 (418)
T ss_pred             C-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecC-CCCCCE-EEEecccCCCCc
Confidence            6 45665555555554444421       12  24888999999999963  34455444 222333 343332111 11


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          269 STAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                             .|++-+.+|.+.+-=+.+.
T Consensus       344 -------~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  344 -------LIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             -------eEEEEcCCCcEEEEEeCCC
Confidence                   8999999999999877765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.27  E-value=3.5e-05  Score=70.26  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=102.1

Q ss_pred             CEEEEE-eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCC-------CCEEEEE-eCCcEEEEEcccce--eEE----E
Q 019326          143 KLALTV-GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGS-------GEKFFMV-TEEKVGIHQAEDAK--LLC----E  207 (343)
Q Consensus       143 ~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~i~~~d~~~~~--~~~----~  207 (343)
                      ++|+.- .....|+-.|++.|+.+........+....+.|+       ....++| .++.+..||.+-..  ++.    .
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444443 3457899999999999999998877666666663       3344555 99999999998643  332    2


Q ss_pred             ecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          208 LDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       208 ~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      +.......|++-+..++||+|+.+|.||+||-- +...++.-.+-+.+|.+|.++.+|.         +|++.+ +..|.
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGk---------wilaTc-~tyLl  642 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGK---------WILATC-KTYLL  642 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCc---------EEEEee-cceEE
Confidence            235566888888888999999999999999954 4444433337789999999999987         655554 56788


Q ss_pred             EEecc
Q 019326          288 VWDVR  292 (343)
Q Consensus       288 vwd~~  292 (343)
                      +++..
T Consensus       643 Li~t~  647 (794)
T PF08553_consen  643 LIDTL  647 (794)
T ss_pred             EEEEe
Confidence            88763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=8e-06  Score=70.33  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=79.5

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEE-EEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVN-DLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                      ...|.-+.|+|.-     .++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|.++
T Consensus        20 ~~~i~~~ewnP~~-----dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-----DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCcc-----chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            3567889999998     799999999999999998 788999987887777 999999999999999999999999999


Q ss_pred             CceeEE--EEcCCcceEEEEe
Q 019326          162 GRRSFY--HKIGKEASLIKFD  180 (343)
Q Consensus       162 ~~~~~~--~~~~~~~~~~~~~  180 (343)
                      +..+..  ......+.++-|+
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCceeccccccccchheeecc
Confidence            987665  4445667777775

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.22  E-value=0.0018  Score=56.03  Aligned_cols=183  Identities=10%  Similarity=0.070  Sum_probs=99.9

Q ss_pred             CCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEe-------ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           43 SPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAI-------HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        43 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +.|.++.|+ ...|+....||.+++||+. |+....+       .-. ...+....+..+|       ++.-..++.+.+
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~-e~~i~~~~~~~~G-------ivvLt~~~~~~~  151 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVL-ECRIFAIWFYKNG-------IVVLTGNNRFYV  151 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcc-cccccccccCCCC-------EEEECCCCeEEE
Confidence            789999998 7788889999999999987 3331111       111 2223333444455       333344455544


Q ss_pred             EECCCcc-eeeee---ee-----ccc-cEEE-EEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCC
Q 019326          115 FDADPFV-LLTSV---KV-----HKK-GVND-LAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       115 wd~~~~~-~~~~~---~~-----~~~-~v~~-i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
                      .+--... ..+.+   ..     +.. .... ..++.+....+....++.+.+.+-...+.   ....+++..+++||++
T Consensus       152 v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng  228 (410)
T PF04841_consen  152 VNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNG  228 (410)
T ss_pred             EeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCC
Confidence            4322111 11111   10     000 1111 23444445555555556666444322211   2234678999999999


Q ss_pred             CEEEEE-eCCcEEEEEcccceeEEEecCC--cceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          184 EKFFMV-TEEKVGIHQAEDAKLLCELDGK--KRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       184 ~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                      ++++.. .+|.+.+....-.+....+...  .....+.|..+..++..- ...+.+..
T Consensus       229 ~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg  285 (410)
T PF04841_consen  229 KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG  285 (410)
T ss_pred             CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence            999988 7789988877666666666533  556677775443333322 33444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.00063  Score=58.90  Aligned_cols=164  Identities=13%  Similarity=0.022  Sum_probs=91.4

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~  162 (343)
                      ......+.++|++     +.++. +.||.-.++.....+...     .+.-...+|.+.+ .+++-..++.|.++.--+.
T Consensus        32 ~~~p~~ls~npng-----r~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   32 EIYPQSLSHNPNG-----RFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             SS--SEEEE-TTS-----SEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             CcCCeeEEECCCC-----CEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            4567899999998     55555 778888888854433322     2334568898854 5666676888999743333


Q ss_pred             ceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCC-CeEEEEeCCCcEEEEECCC
Q 019326          163 RRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGEN-GVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~  241 (343)
                      +.......+..+..+-.   |..+....++.|.+||+.+++.++.+.... |..+.|++. ++++..+. ..+.+++...
T Consensus       100 ~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~  174 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK-DSIYILKYNL  174 (443)
T ss_dssp             -TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             ccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC-CeEEEEEecc
Confidence            33233344433443333   888888888899999999999999998664 899999954 66666654 4688877553


Q ss_pred             C-----------ceeEEecccccccEEEEEEEec
Q 019326          242 G-----------KVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       242 ~-----------~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      .           ..+..+. .-...|.+.+|..+
T Consensus       175 ~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIH-EISERIKSGCWVED  207 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT
T ss_pred             hhcccccccCchhceEEEE-EecceeEEEEEEcC
Confidence            3           0233332 22567777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.16  E-value=0.0021  Score=51.02  Aligned_cols=196  Identities=14%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             eEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           35 LFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ...+.+-...+..|+|+   +.++++....+.|..++.+ |+.++.+.....+..-.|++..++     .++++--.++.
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-----~~vl~~Er~~~   87 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-----RYVLSEERDQR   87 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-----EEEEEETTTTE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-----EEEEEEcCCCc
Confidence            34556666679999998   4577778888999888874 788887765434778899998877     56666556899


Q ss_pred             EEEEECCCcc------eeeeee-----eccccEEEEEEecCCCEEEEEeCCCeEEEEEccC---CceeEEEE--------
Q 019326          112 VSIFDADPFV------LLTSVK-----VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR---GRRSFYHK--------  169 (343)
Q Consensus       112 i~iwd~~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~--------  169 (343)
                      +.++++....      ....+.     .++..+-.++|+|.++.|+.+-...-..+|.+..   ........        
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence            9999883321      112222     2345689999999988888887776677777654   22211111        


Q ss_pred             -cCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC----------cceEEeeecCCCeEEEEeCCCcEEE
Q 019326          170 -IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK----------KRILCAAPGENGVLFTGGEDRSITA  236 (343)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~----------~~i~~~~~~~~~~l~~~~~dg~i~i  236 (343)
                       .-..++.+.++|....+++-  ....+..+| ..++.+..+.-.          ...-.+++.+++.|+..++-+..++
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence             12457889999976655554  667788888 677776666521          2467788876667777777776665


Q ss_pred             E
Q 019326          237 W  237 (343)
Q Consensus       237 ~  237 (343)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.15  E-value=0.0005  Score=46.24  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             EEEEEEec---CC-CEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEe
Q 019326          133 VNDLAVHH---SG-KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       133 v~~i~~~~---~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  208 (343)
                      |+++++..   +| +.|++|+.|..|++|+-  ...+........+..++-...+++.+...+|+|-+|+-  ...+...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeee
Confidence            56666654   33 78999999999999974  46677777788888888877755444449999999975  3445555


Q ss_pred             cCCcceEEeeecCC-----CeEEEEeCCCcEEE
Q 019326          209 DGKKRILCAAPGEN-----GVLFTGGEDRSITA  236 (343)
Q Consensus       209 ~~~~~i~~~~~~~~-----~~l~~~~~dg~i~i  236 (343)
                      +....++++.+.+-     ..|++|-.+|.|-+
T Consensus        78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            55566777776532     27899999998753

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=98.10  E-value=0.0047  Score=57.36  Aligned_cols=197  Identities=13%  Similarity=0.149  Sum_probs=125.2

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCC-------eEEEEEeCC--CC---------CCCCceEEEeeCCCeEE
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSS-------VTSLAFYTP--QN---------LSVPRNLFSTSADGFVS  113 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------v~~l~~~~~--~~---------~~~~~~l~s~~~dg~i~  113 (343)
                      ++.|+.++.++.|.-.|..+|+.+..+.......       ...+.+...  ..         ......++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            7788888999999999999999999886541110       122333211  00         00124788899999999


Q ss_pred             EEECCCcceeeeeeeccccEE-------------EEEEec--CCCEEEEEeC----------CCeEEEEEccCCceeEEE
Q 019326          114 IFDADPFVLLTSVKVHKKGVN-------------DLAVHH--SGKLALTVGR----------DDCLAMVNLVRGRRSFYH  168 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~  168 (343)
                      -.|.++++.+..+.. .+.|.             .+.-.|  .+..+++++.          +|.|+-+|.++|+.+...
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 22111             011112  1345666643          688999999999988766


Q ss_pred             EcCCc------------------c-eEEEEeCCCCEEEEE-------------------eCCcEEEEEcccceeEEEecC
Q 019326          169 KIGKE------------------A-SLIKFDGSGEKFFMV-------------------TEEKVGIHQAEDAKLLCELDG  210 (343)
Q Consensus       169 ~~~~~------------------~-~~~~~~~~~~~~~~~-------------------~~~~i~~~d~~~~~~~~~~~~  210 (343)
                      ....+                  + ..+++++....++..                   ..+.+.-.|.++++....++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            53210                  0 234555555544443                   124466778889998887762


Q ss_pred             --C--------c-c-eEEeeecCC---CeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          211 --K--------K-R-ILCAAPGEN---GVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       211 --~--------~-~-i~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                        +        . + +..+...++   ..++.++.+|.++++|.++|+++...+
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence              1        1 1 122222133   288999999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.10  E-value=1.1e-06  Score=75.68  Aligned_cols=181  Identities=15%  Similarity=0.142  Sum_probs=118.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEee----CCCeEEEEEcCCC---
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGG----TDDTIHLYDLSTS---   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~----~dg~i~iwd~~~~---   72 (343)
                      +++|.++|.|.+-..+...          .......++|..+.++++|+   .+.||.|-    .|..+.|||+.++   
T Consensus        73 lavG~atG~I~l~s~r~~h----------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv  142 (783)
T KOG1008|consen   73 LAVGSATGNISLLSVRHPH----------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV  142 (783)
T ss_pred             hhhccccCceEEeecCCcc----------cccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC
Confidence            6789999999998876521          11122335788899999998   46777763    3567999999876   


Q ss_pred             -eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeC
Q 019326           73 -SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGR  150 (343)
Q Consensus        73 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~  150 (343)
                       +.-..|.........+++|..+.     +++.+|.....+.++|++.. +...-.-.+..+..+...| .++++++-. 
T Consensus       143 Pke~~~fs~~~l~gqns~cwlrd~-----klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-  215 (783)
T KOG1008|consen  143 PKESPLFSSSTLDGQNSVCWLRDT-----KLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-  215 (783)
T ss_pred             CccccccccccccCccccccccCc-----chhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-
Confidence             22223333114556688888666     78889999999999999742 1111111234566677777 666777655 


Q ss_pred             CCeEEEEE-ccCCceeEE------EEcCCcceEEEEeCCCCEE--EEE-eCCcEEEEEcc
Q 019326          151 DDCLAMVN-LVRGRRSFY------HKIGKEASLIKFDGSGEKF--FMV-TEEKVGIHQAE  200 (343)
Q Consensus       151 d~~i~~wd-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~-~~~~i~~~d~~  200 (343)
                      ||.|.+|| .+.-+....      -+.+.....++|.|...-+  +.. ..+.|++|++.
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            99999999 433322111      1123457889999865433  333 67889999875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=1.9e-05  Score=70.47  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=102.2

Q ss_pred             CcceEEEEeCCCCEEEEE-----eCCcEEEEEcccceeEEEecCCcceEEeeecCCC-eEEEEeCCCcEEEEECCCCcee
Q 019326          172 KEASLIKFDGSGEKFFMV-----TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                      ...+...|+|...+++++     ..|.+.||- .+|++.+....+..+++++|++.. .|+.|-.-|.+.+|...+.+.-
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            344567899999998887     367787773 567777777777778899999876 6677778899999998876654


Q ss_pred             EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccc--eeEEEcCCC
Q 019326          246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSR--LTCLAGSST  319 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~  319 (343)
                      .... .|..+|..+.|++++.         .++|+..=|.+.+|.+.-....+..++.....+..  ..|...+++
T Consensus        95 tv~~-th~a~i~~l~wS~~G~---------~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~  160 (1416)
T KOG3617|consen   95 TVVE-THPAPIQGLDWSHDGT---------VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYD  160 (1416)
T ss_pred             eecc-CCCCCceeEEecCCCC---------eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCC
Confidence            4444 8999999999999998         99999999999999887543334444444444443  455566666

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0073  Score=51.87  Aligned_cols=210  Identities=16%  Similarity=0.211  Sum_probs=144.4

Q ss_pred             EEEec--Cc-eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEEEECCCc
Q 019326           47 TVAVS--GT-AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSIFDADPF  120 (343)
Q Consensus        47 ~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~  120 (343)
                      .++.+  +. ..++...++.|.+.|..+.+........  .....+++.+++     +.+..+..   ++++.+.|..+.
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~-----~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDG-----KYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCC-----CEEEEEecccCCceEEEEeCCCC
Confidence            44554  44 4555555688999998888777776655  366789999998     55555554   689999999998


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeE-----EEEcCCcceEEEEeCCCCEEEEE-e-C-
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVG-RDDCLAMVNLVRGRRSF-----YHKIGKEASLIKFDGSGEKFFMV-T-E-  191 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~-~-  191 (343)
                      +.......-..+ ..+++.|++..++... .++.|.+.|........     ..........+.++|++..+.+. . + 
T Consensus       151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            888875543344 8899999998666555 78999999977665543     13334556779999999988877 3 2 


Q ss_pred             -CcEEEEEcccceeEEE-ecCCc-ceEEeeec-CCCeEEEE-eCCCcEEEEECCCCceeEEeccccc---ccEEEEEEEe
Q 019326          192 -EKVGIHQAEDAKLLCE-LDGKK-RILCAAPG-ENGVLFTG-GEDRSITAWDTNSGKVAYCIEDAHS---ARVKGIVVLT  263 (343)
Q Consensus       192 -~~i~~~d~~~~~~~~~-~~~~~-~i~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~h~---~~v~~~~~~~  263 (343)
                       +.+...|..++..... ..... ....+... .+..+.+. ...+.+.+.|..+........ ...   ..+..+++.+
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~-~~~~~~~~~~~~~~~~  308 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP-TGNEALGEPVSIAISP  308 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec-ccccccccceecccee
Confidence             4888899888877765 22222 34444555 45555555 345889999999888777665 222   2355565555


Q ss_pred             cC
Q 019326          264 KN  265 (343)
Q Consensus       264 ~~  265 (343)
                      ..
T Consensus       309 ~~  310 (381)
T COG3391         309 LY  310 (381)
T ss_pred             ec
Confidence            43

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.01  E-value=0.0079  Score=52.08  Aligned_cols=191  Identities=13%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc------eeeeeeeccccEEEE
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV------LLTSVKVHKKGVNDL  136 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~i  136 (343)
                      .|++|+.. |+.+..+.-. .+.|.++.|..+.      .|+....||.+++||+....      .+.........+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~-~~~iv~~~wt~~e------~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWD-SGRIVGMGWTDDE------ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECCC-CCEeEEEEEC-CCCEEEEEECCCC------eEEEEEcCCEEEEEeCCCceeechhhhccccCccccccccc
Confidence            59999976 7777777766 5899999999865      78888999999999986432      111111111222233


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCc-eeEE-EEcCCcce----------EEEEeCCCCEEEEE-eCCcEEEEEcccce
Q 019326          137 AVHHSGKLALTVGRDDCLAMVNLVRGR-RSFY-HKIGKEAS----------LIKFDGSGEKFFMV-TEEKVGIHQAEDAK  203 (343)
Q Consensus       137 ~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~-~~~~~~~~----------~~~~~~~~~~~~~~-~~~~i~~~d~~~~~  203 (343)
                      .+..+|-.++  ..++.+.+..-.... .... ...+....          ...++.+....+.. .++.+.+.+....+
T Consensus       134 ~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  134 WFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             ccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            3333553333  334455444322211 1111 01111000          12233444444433 44455544433221


Q ss_pred             eEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          204 LLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       204 ~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                         .+...+++..++.+ ++++++.-..+|.+.+.+..-.+.+.++...-......|.|..+..
T Consensus       212 ---~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  212 ---QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             ---cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence               13345789999999 5678888888999999987766777777633345667888887653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.99  E-value=0.00041  Score=63.58  Aligned_cols=142  Identities=13%  Similarity=0.114  Sum_probs=99.7

Q ss_pred             EeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc--ceeee-ee--eccc
Q 019326           57 SGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF--VLLTS-VK--VHKK  131 (343)
Q Consensus        57 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~-~~--~~~~  131 (343)
                      .......|+-.|+++|+.+..+..+...+|..++-........+..-+.|-.++.+..||.+-.  +++.. ..  ....
T Consensus       499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            3345678999999999999999988444455554332211112345677888889999998643  22211 11  1234


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee--EEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS--FYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      ...|++-+.+| +||+|+.+|.|++||- .++..  ....++.+|..+..+.+|+++++..+..+.+++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            56777777666 7999999999999994 44322  23355789999999999999999999999998863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=1.6e-05  Score=60.14  Aligned_cols=143  Identities=16%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEcCCcceE-EEEeCCCCEEEEE-eCCcEEEEEcccce-eEEEec-CCcceEEeee
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASL-IKFDGSGEKFFMV-TEEKVGIHQAEDAK-LLCELD-GKKRILCAAP  219 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~d~~~~~-~~~~~~-~~~~i~~~~~  219 (343)
                      .+...+.+|.|.-++++..+.......  .+.+ .....-+.-++++ .++.+.+|...... ....+. ....+.++..
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~--~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSER--FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhh--hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            344556778888777765432211111  0111 1222234455555 89999999876211 111111 3344555544


Q ss_pred             c--CCCeEEEEeCCCcEEEEECCCCceeEEeccccc-ccEEEEEEEecCCCCCCCCCCeEEEEE--cCCCcEEEEeccCc
Q 019326          220 G--ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS-ARVKGIVVLTKNDGGSTAENPYLVASA--SSDGVICVWDVRMA  294 (343)
Q Consensus       220 ~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~  294 (343)
                      .  .+.+..++..+|.|+.|++...+.+.... .|. .++..+.....+.         +++.+  |.|..++.|++...
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~---------~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDE---------FLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCc---------eEEeeccccchhhhhcchhhh
Confidence            4  34588899999999999999888777666 677 6777776666665         78888  88999999999875


Q ss_pred             cccC
Q 019326          295 IKEK  298 (343)
Q Consensus       295 ~~~~  298 (343)
                      ....
T Consensus       180 ~d~~  183 (238)
T KOG2444|consen  180 KDES  183 (238)
T ss_pred             hccC
Confidence            4333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.89  E-value=0.0076  Score=54.46  Aligned_cols=226  Identities=15%  Similarity=0.151  Sum_probs=122.7

Q ss_pred             CceEEEeeCCC------eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------CeEEEEECCC
Q 019326           52 GTAAASGGTDD------TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVSIFDADP  119 (343)
Q Consensus        52 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~  119 (343)
                      +..++.||.++      .+..||..+++......-.....-.+++...+      ...++|+.|      .++..||..+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~------~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG------KLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC------EEEEEccccCCCcccceEEEecCCC
Confidence            56677777773      58889988774333222111233445555544      488899998      3577888765


Q ss_pred             cc--eeeeeeeccccEEEEEEecCCCEEEEEeCCCe-----EEEEEccCCceeEEEEcCCcceEEEEeC-CCCEEEEE-e
Q 019326          120 FV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC-----LAMVNLVRGRRSFYHKIGKEASLIKFDG-SGEKFFMV-T  190 (343)
Q Consensus       120 ~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  190 (343)
                      .+  .+..+..........  .-+|...++||.||.     +-.||..+.+-................. ++...+++ .
T Consensus       359 ~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence            44  222222222211111  125778888988864     7778887766443333333333322222 45555555 2


Q ss_pred             C------CcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCCc-----EEEEECCCCceeEEecccccccEE
Q 019326          191 E------EKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDRS-----ITAWDTNSGKVAYCIEDAHSARVK  257 (343)
Q Consensus       191 ~------~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~h~~~v~  257 (343)
                      +      ..+..||..+.+-...-+  ....-..++..++.+.+.|+.|+.     |..||..+.+-...-...+...-.
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~  516 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV  516 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence            2      346778887765433322  222222344447778888887763     777888766533221101222222


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCC-----cEEEEeccCcc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDG-----VICVWDVRMAI  295 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~  295 (343)
                      +++....          ...+.|+.||     +|..||..+.+
T Consensus       517 g~~~~~~----------~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  517 GVVVLGG----------KLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cEEEECC----------EEEEEecccCccccceeEEcCCCCCc
Confidence            2222222          2788888886     57778777654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.00027  Score=60.09  Aligned_cols=138  Identities=15%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC--------EEEEEeCCcEEEEEccccee--E-----EEe
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE--------KFFMVTEEKVGIHQAEDAKL--L-----CEL  208 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~d~~~~~~--~-----~~~  208 (343)
                      +|.++.....++-.|++.|+.+........|+.+.+.|+.+        .|+...++.|.-||.+-...  +     +.+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455556779999999999999999998898888888643        33333899999999884322  1     122


Q ss_pred             cCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          209 DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       209 ~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      .......|.+-..++++++|+.+|.|++||- .+...++.-.+.+.+|..+..+.++.         +|+..+ +..+.+
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK---------wil~Tc-~tyLlL  496 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK---------WILATC-KTYLLL  496 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc---------EEEEec-ccEEEE
Confidence            2445677777777889999999999999998 55555444338899999999999987         555544 567777


Q ss_pred             Eecc
Q 019326          289 WDVR  292 (343)
Q Consensus       289 wd~~  292 (343)
                      -++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            7664

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.87  E-value=0.0046  Score=55.84  Aligned_cols=203  Identities=16%  Similarity=0.135  Sum_probs=111.3

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee------CCC--eEEEEECCCcceeeeeeecccc
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS------ADG--FVSIFDADPFVLLTSVKVHKKG  132 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~  132 (343)
                      +|.+.-.+-.....+....+. ...+...+++|++     +.++...      .|.  .|.+++... .. ..+. ....
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~-~~~vsspaiSpdG-----~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt-~g~~  398 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQ-MGNITSAALSRSG-----RQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVL-EGHS  398 (591)
T ss_pred             CCeEEEecCCCeeeCCCcccc-ccCcccceECCCC-----CEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeee-cCCC
Confidence            555544432222223222233 3467889999999     5555444      243  455555422 22 2222 1223


Q ss_pred             EEEEEEecCCCEEEEEeCC------------CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEE---E
Q 019326          133 VNDLAVHHSGKLALTVGRD------------DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGI---H  197 (343)
Q Consensus       133 v~~i~~~~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~  197 (343)
                      ...-.|+|+|..+++....            +.+.+.++..+....  ..+..+..+.|+|+|.+++...++.+.+   -
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vv  476 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVE  476 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEE
Confidence            7778999998877776532            233333444333222  4456799999999999999987788777   4


Q ss_pred             Eccccee-E---EEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCC-CceeEEeccc--ccccEEEEEEEecCCCC
Q 019326          198 QAEDAKL-L---CELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNS-GKVAYCIEDA--HSARVKGIVVLTKNDGG  268 (343)
Q Consensus       198 d~~~~~~-~---~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~--h~~~v~~~~~~~~~~~~  268 (343)
                      ....+.. +   ..+.  ....+..+.|.++..|+++..++.-.+|.+.- |.....+. +  ...++.+++-.+.    
T Consensus       477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~-~~n~~~~v~~vaa~~~----  551 (591)
T PRK13616        477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALP-SRNLSAPVVAVAASPS----  551 (591)
T ss_pred             eCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccC-CCCccCceEEEecCCc----
Confidence            4344431 1   1121  22335778898666566666655544554332 22222223 2  2566777766653    


Q ss_pred             CCCCCCeEEEEEcCCCcE
Q 019326          269 STAENPYLVASASSDGVI  286 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i  286 (343)
                             .++....+|.+
T Consensus       552 -------~iyv~~~~g~~  562 (591)
T PRK13616        552 -------TVYVTDARAVL  562 (591)
T ss_pred             -------eEEEEcCCceE
Confidence                   35555666633

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=6.7e-05  Score=40.06  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=33.9

Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.84  E-value=0.0034  Score=56.72  Aligned_cols=184  Identities=7%  Similarity=0.048  Sum_probs=95.9

Q ss_pred             ecCceEEEeeCC------CeEEEEEcCCCeee--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-----eEEEEE
Q 019326           50 VSGTAAASGGTD------DTIHLYDLSTSSSL--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-----FVSIFD  116 (343)
Q Consensus        50 ~~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iwd  116 (343)
                      ..+...+.||.+      ..+..||..++.-.  ..+... .... +++.. ++     +..+.|+.++     ++..||
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~-~~~~~-~g-----~IYviGG~~~~~~~~sve~Yd  373 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-RCRF-SLAVI-DD-----TIYAIGGQNGTNVERTIECYT  373 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-hhce-eEEEE-CC-----EEEEECCcCCCCCCceEEEEE
Confidence            346677777753      34778888776432  122111 1122 22322 34     5777787754     478899


Q ss_pred             CCCc--ceeeeeeeccccEEEEEEecCCCEEEEEeCC-----------------------CeEEEEEccCCceeEEEEcC
Q 019326          117 ADPF--VLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----------------------DCLAMVNLVRGRRSFYHKIG  171 (343)
Q Consensus       117 ~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----------------------~~i~~wd~~~~~~~~~~~~~  171 (343)
                      ..+.  ..+..+.........+.  -+++..+.||.+                       ..+..||.++.+-.......
T Consensus       374 p~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~  451 (557)
T PHA02713        374 MGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW  451 (557)
T ss_pred             CCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence            8653  22222221111111222  256777777754                       24777888877644333332


Q ss_pred             Cc-ceEEEEeCCCCEEEEE-eC------CcEEEEEccc-ceeE--EEecCCcceEEeeecCCCeEEEEeCCC--cEEEEE
Q 019326          172 KE-ASLIKFDGSGEKFFMV-TE------EKVGIHQAED-AKLL--CELDGKKRILCAAPGENGVLFTGGEDR--SITAWD  238 (343)
Q Consensus       172 ~~-~~~~~~~~~~~~~~~~-~~------~~i~~~d~~~-~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~dg--~i~i~d  238 (343)
                      .. .......-+++..+++ .+      ..+..||..+ .+-.  ..++.+.....++..++.+.++|+.+|  .+..||
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcC
Confidence            11 1111222345555555 22      2356788887 3322  233322223334444788888998888  677888


Q ss_pred             CCCCc
Q 019326          239 TNSGK  243 (343)
Q Consensus       239 ~~~~~  243 (343)
                      ..+.+
T Consensus       532 ~~~~~  536 (557)
T PHA02713        532 VYTYE  536 (557)
T ss_pred             ccccc
Confidence            87665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=0.012  Score=50.14  Aligned_cols=246  Identities=11%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-eec----------
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-KVH----------  129 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~----------  129 (343)
                      .+.+.+||+.+++.......  ...+....|+|++     +.++... ++.|.+++..+++..+.- .+.          
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g-----~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw   93 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDG-----KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW   93 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSS-----TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred             ceeEEEEecCCCceEECcCC--ccccccceeecCC-----CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence            35689999998765544433  4778899999999     5666654 578999998766433221 110          


Q ss_pred             ------cccEEEEEEecCCCEEEEEeCC-CeE-----------------------------------EEEEccCCceeEE
Q 019326          130 ------KKGVNDLAVHHSGKLALTVGRD-DCL-----------------------------------AMVNLVRGRRSFY  167 (343)
Q Consensus       130 ------~~~v~~i~~~~~~~~l~~~~~d-~~i-----------------------------------~~wd~~~~~~~~~  167 (343)
                            -+.-..+-|+|++++|+....| ..+                                   .++|+.+++....
T Consensus        94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~  173 (353)
T PF00930_consen   94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL  173 (353)
T ss_dssp             HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred             eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence                  0122457899999888776543 112                                   2333433332111


Q ss_pred             E-E-----cCCcceEEEEeCCCCEEEEE-e---CC--cEEEEEcccceeEEEec--CCcce---EEeee--c-CCCeEEE
Q 019326          168 H-K-----IGKEASLIKFDGSGEKFFMV-T---EE--KVGIHQAEDAKLLCELD--GKKRI---LCAAP--G-ENGVLFT  227 (343)
Q Consensus       168 ~-~-----~~~~~~~~~~~~~~~~~~~~-~---~~--~i~~~d~~~~~~~~~~~--~~~~i---~~~~~--~-~~~~l~~  227 (343)
                      . .     ...-+..+.|.+++..++.. .   .+  .+.++|..+++....+.  ....+   ....+  . .+.++..
T Consensus       174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~  253 (353)
T PF00930_consen  174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI  253 (353)
T ss_dssp             ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred             eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence            1 0     11224568888888844444 2   22  25556776654433222  22111   12222  2 3346666


Q ss_pred             EeCCCc--EEEEECCCCceeEEecccccccEEE-EEEEecCCCCCCCCCCeEEEEEcCC--CcEEEEeccCccccCCCcc
Q 019326          228 GGEDRS--ITAWDTNSGKVAYCIEDAHSARVKG-IVVLTKNDGGSTAENPYLVASASSD--GVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       228 ~~~dg~--i~i~d~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~  302 (343)
                      ...+|.  |.+++...+. ...+. ...-.|.. +.+.+.+.        .+.+++..+  +.-.+|.+.-.....+..+
T Consensus       254 s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L  323 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCL  323 (353)
T ss_dssp             EETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEES
T ss_pred             EEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEec
Confidence            667776  4455655444 44555 44556655 45555544        245566553  3455554443201111122


Q ss_pred             cccccccce-eEEEcCCCCceecccc
Q 019326          303 AEAKTNSRL-TCLAGSSTKSFKRPQI  327 (343)
Q Consensus       303 ~~~~~~~~i-~~~~~s~~~~~~~~~~  327 (343)
                      .   ..... ..+.+||++++.+...
T Consensus       324 T---~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  324 T---CEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             S---TTSSTTEEEEE-TTSSEEEEEE
T ss_pred             c---CCCCCceEEEECCCCCEEEEEE
Confidence            1   11112 5899999999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.0018  Score=55.96  Aligned_cols=141  Identities=15%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe--EEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF--VSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      ..+.++++++++.......  ...-..-+|+|++.    +++++...||.  |+++|+.+.+ ...+....+.-..=.|+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~----~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~s  290 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGS----KLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWS  290 (425)
T ss_pred             ceEEEEeccCCccceeecc--CCccCCccCCCCCC----EEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCC
Confidence            4688999998876555542  24445678999993    56667777775  5666776655 33344333333356799


Q ss_pred             cCCCEEEEEeC-CCe--EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CCc--EEEEEcccceeEEEec
Q 019326          140 HSGKLALTVGR-DDC--LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EEK--VGIHQAEDAKLLCELD  209 (343)
Q Consensus       140 ~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--i~~~d~~~~~~~~~~~  209 (343)
                      |+|+.++-.+. .|.  |.+++.+.+...........-..-.++|+|++++...  ++.  |.++|+.++...+.+.
T Consensus       291 pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         291 PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             CCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc
Confidence            99988776654 343  6666776665533333333334788999999999883  455  5666666555444444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.014  Score=48.10  Aligned_cols=159  Identities=16%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEec----cCCCCCeEEEEEeCCCCCCCCceEEEeeCC------------CeEEEE
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIH----HHESSSVTSLAFYTPQNLSVPRNLFSTSAD------------GFVSIF  115 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------------g~i~iw  115 (343)
                      +..|+++. .| +.+++.+++..+..+.    .......+.+...|++      .++.++..            |.|+.+
T Consensus        77 ~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG------~~wfgt~~~~~~~~~~~~~~G~lyr~  148 (307)
T COG3386          77 GGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG------RIWFGDMGYFDLGKSEERPTGSLYRV  148 (307)
T ss_pred             CCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC------CEEEeCCCccccCccccCCcceEEEE
Confidence            44555544 33 6677776665533332    2213556778888888      34444443            334444


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-CCeEEEEEccC--Cc---ee--EEE-EcCCcceEEEEeCCCCEE
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLVR--GR---RS--FYH-KIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~--~~---~~--~~~-~~~~~~~~~~~~~~~~~~  186 (343)
                      |. .+..++.+..+-..-+.|+|+|+++.|+.+.. .+.|.-|++..  +.   ..  ... ..+...-.++...+|.+.
T Consensus       149 ~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw  227 (307)
T COG3386         149 DP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW  227 (307)
T ss_pred             cC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEE
Confidence            43 45555555555666788999999977776655 47788887752  11   11  111 123556668889999998


Q ss_pred             EEE-eC-CcEEEEEcccceeEEEecCC-cceEEeeec
Q 019326          187 FMV-TE-EKVGIHQAEDAKLLCELDGK-KRILCAAPG  220 (343)
Q Consensus       187 ~~~-~~-~~i~~~d~~~~~~~~~~~~~-~~i~~~~~~  220 (343)
                      +++ .+ +.|..|+.. ++.+..+..+ ..+++++|-
T Consensus       228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             EecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            766 44 389999988 8988888855 788888886

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.00031  Score=64.73  Aligned_cols=96  Identities=19%  Similarity=0.339  Sum_probs=69.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++|++.|.+...|....           ..+...-..-.++|++++|+  |..++.|-.+|.|.+||..+++.++.+..
T Consensus       102 ivi~Ts~ghvl~~d~~~n-----------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGN-----------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             EEEEcCchhhhhhhhhcc-----------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            677888888888887651           23233323346899999999  88999999999999999999998888876


Q ss_pred             CCCCCeEEE---EEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           81 HESSSVTSL---AFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        81 ~~~~~v~~l---~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      + ..+.+.+   .+...+     ..++++...|.  +|.+
T Consensus       171 ~-~ap~t~vi~v~~t~~n-----S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  171 H-GAPVTGVIFVGRTSQN-----SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             c-CCccceEEEEEEeCCC-----cEEEEccCCCc--eEEE
Confidence            5 4444443   334444     47888888886  5554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.76  E-value=0.0045  Score=53.56  Aligned_cols=173  Identities=10%  Similarity=0.012  Sum_probs=99.1

Q ss_pred             EEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe-e--CC-CeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           64 IHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST-S--AD-GFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~-~--~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      +.+=|.+ +.....+... ...+..-+|+|++     ..++-. -  .. ..+.++++.+++...... ..+.-..-+|+
T Consensus       175 l~~~D~d-g~~~~~l~~~-~~~~~~p~ws~~~-----~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fs  246 (425)
T COG0823         175 LALGDYD-GYNQQKLTDS-GSLILTPAWSPDG-----KKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFS  246 (425)
T ss_pred             EEEEccC-CcceeEeccc-CcceeccccCcCC-----CceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCC
Confidence            4444443 4444444444 5677777899988     343322 1  22 359999998876554444 33334557899


Q ss_pred             cCCCEEEEE-eCCCe--EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe--CC--cEEEEEcccceeEEEecCCc
Q 019326          140 HSGKLALTV-GRDDC--LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT--EE--KVGIHQAEDAKLLCELDGKK  212 (343)
Q Consensus       140 ~~~~~l~~~-~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~  212 (343)
                      |+|+.|+.+ ..||.  |++.|+..+...........-..-.|+|+|+.++..+  .|  .|.+++.+.....+......
T Consensus       247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~  326 (425)
T COG0823         247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG  326 (425)
T ss_pred             CCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence            999766654 44555  6666777766444233333344678999999998883  33  36666776665533222222


Q ss_pred             ceEEeeec-CCCeEEEEeC-CCc--EEEEECCCCce
Q 019326          213 RILCAAPG-ENGVLFTGGE-DRS--ITAWDTNSGKV  244 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~-dg~--i~i~d~~~~~~  244 (343)
                      .-..-.++ ++++++..+. +|.  |.+.|+.++..
T Consensus       327 ~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         327 GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            11144444 4555555443 344  66666665553

>smart00320 WD40 WD40 repeats

Probab=97.76  E-value=8.9e-05  Score=39.55  Aligned_cols=39  Identities=31%  Similarity=0.588  Sum_probs=33.2

Q ss_pred             CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          242 GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       242 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +++...+. .|...|.++.+.+...         ++++++.|+.+++|+
T Consensus         2 ~~~~~~~~-~~~~~i~~~~~~~~~~---------~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLK-GHTGPVTSVAFSPDGK---------YLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEE-ecCCceeEEEECCCCC---------EEEEecCCCeEEEcC
Confidence            34566666 8889999999998876         999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.72  E-value=0.015  Score=46.32  Aligned_cols=164  Identities=14%  Similarity=0.194  Sum_probs=112.2

Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec-cccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH-KKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      .+. ...++++.|+|+.     +.|++......-.++=...|+.+.++... -.....|.+..++++.++--.++.+.++
T Consensus        82 ~g~-~~nvS~LTynp~~-----rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          82 LGE-TANVSSLTYNPDT-----RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccc-cccccceeeCCCc-----ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence            344 4569999999999     78888888888888877888988887632 1234567788888888887788999988


Q ss_pred             EccCCceeE-----EEEcC------CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec----C-------Ccce
Q 019326          158 NLVRGRRSF-----YHKIG------KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD----G-------KKRI  214 (343)
Q Consensus       158 d~~~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~----~-------~~~i  214 (343)
                      .+..+....     ...++      .....++|+|.+..++.+ ..+-+.+|........-...    +       -..+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            887664222     12221      234569999999999999 78888888776433111111    1       1235


Q ss_pred             EEeeec--CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          215 LCAAPG--ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       215 ~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      ..+.+.  .+.+++-+.+++.+.-.|.. |+++..+.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            566666  45678888888888888876 55544443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.019  Score=47.29  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=115.9

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee----
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV----  128 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  128 (343)
                      .++++--..+.|.-|+..+++.. .+...  ..+.++.....+     ..|+++..  -+.+++.+++..+..+..    
T Consensus        38 ~L~w~DI~~~~i~r~~~~~g~~~-~~~~p--~~~~~~~~~d~~-----g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          38 ALLWVDILGGRIHRLDPETGKKR-VFPSP--GGFSSGALIDAG-----GRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             EEEEEeCCCCeEEEecCCcCceE-EEECC--CCcccceeecCC-----CeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            35666667788888988766432 33322  334454444443     35555444  355667655544333221    


Q ss_pred             -ccccEEEEEEecCCCEEEEEeC-----------CCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eCCc
Q 019326          129 -HKKGVNDLAVHHSGKLALTVGR-----------DDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       129 -~~~~v~~i~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                       .....+.....|+|.+.++...           -|.++.+|. .+........ -...+.++|+|+++.++.+  ..+.
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence             1135667888898876665444           133444443 3444333333 3456779999999999999  3477


Q ss_pred             EEEEEccc--cee-----EEEec-CCcceEEeeecCCCeEE-EEeCCC-cEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          194 VGIHQAED--AKL-----LCELD-GKKRILCAAPGENGVLF-TGGEDR-SITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       194 i~~~d~~~--~~~-----~~~~~-~~~~i~~~~~~~~~~l~-~~~~dg-~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      +.-|++..  +..     ...+. ..+..-.++...+..+. ++-.+| .|.+|+.. ++.+..+. -....+++++|-.
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG  264 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGG  264 (307)
T ss_pred             EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeC
Confidence            77777652  111     11111 23444555555344444 444443 89999999 99999888 5557788888876


Q ss_pred             c
Q 019326          264 K  264 (343)
Q Consensus       264 ~  264 (343)
                      .
T Consensus       265 ~  265 (307)
T COG3386         265 P  265 (307)
T ss_pred             C
Confidence            4

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.67  E-value=0.018  Score=45.71  Aligned_cols=221  Identities=17%  Similarity=0.239  Sum_probs=130.7

Q ss_pred             CceEEEeeCCCe-EEEEEcCCCeeeeEeccCCC-CCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEECCC-ccee
Q 019326           52 GTAAASGGTDDT-IHLYDLSTSSSLGAIHHHES-SSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFDADP-FVLL  123 (343)
Q Consensus        52 ~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~-~~~~  123 (343)
                      +.-++.+-.-|+ ..++|.++.+....+...+. .---.=.|+|++     .+|.+.-.|     |.|-|||.+. .+.+
T Consensus        80 ~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-----~~LYATEndfd~~rGViGvYd~r~~fqrv  154 (366)
T COG3490          80 PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-----RLLYATENDFDPNRGVIGVYDAREGFQRV  154 (366)
T ss_pred             cceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-----cEEEeecCCCCCCCceEEEEeccccccee
Confidence            344555555444 45778877766655533211 111223689999     677665443     6899999864 4567


Q ss_pred             eeeeeccccEEEEEEecCCCEEEEEeC------------------CCeEEEEEccCCceeEEEEcC-----CcceEEEEe
Q 019326          124 TSVKVHKKGVNDLAVHHSGKLALTVGR------------------DDCLAMVNLVRGRRSFYHKIG-----KEASLIKFD  180 (343)
Q Consensus       124 ~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~  180 (343)
                      .++..|.-....+.+.+||+.++.+..                  .-++.+.|..+++.+....++     -.+..++..
T Consensus       155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g  234 (366)
T COG3490         155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG  234 (366)
T ss_pred             cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence            788888878888999999998887642                  112334444455544444333     345667888


Q ss_pred             CCCCEEEEE-eCCc-----EEEEEcccceeEEEecC--------CcceEEeeec-CCCeE-EEEeCCCcEEEEECCCCce
Q 019326          181 GSGEKFFMV-TEEK-----VGIHQAEDAKLLCELDG--------KKRILCAAPG-ENGVL-FTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       181 ~~~~~~~~~-~~~~-----i~~~d~~~~~~~~~~~~--------~~~i~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~  244 (343)
                      +++..++.+ ..|.     -.+=-...++.+.-+..        ...|-+++.+ ...++ +++-..+...+||..+|..
T Consensus       235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence            888877777 3221     22223334455544442        2456677776 23444 4444566788999999987


Q ss_pred             eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          245 AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       245 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      +..-.   -.....++....+           ++..+.+|.+.++.-
T Consensus       315 v~~a~---l~daaGva~~~~g-----------f~vssg~G~~~~~s~  347 (366)
T COG3490         315 VSEAA---LPDAAGVAAAKGG-----------FAVSSGQGRIIFYSR  347 (366)
T ss_pred             Eeccc---ccccccceeccCc-----------eEEecCCceEEeccc
Confidence            65533   2223344443332           555566888888743

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.67  E-value=0.017  Score=45.77  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=112.9

Q ss_pred             eeeeeeeccc--cEEEEEEecCCCEEEEEeCCC--eEEEEEccCCceeEEEEcCCcc--eEEEEeCCCCEEEEE-eCCcE
Q 019326          122 LLTSVKVHKK--GVNDLAVHHSGKLALTVGRDD--CLAMVNLVRGRRSFYHKIGKEA--SLIKFDGSGEKFFMV-TEEKV  194 (343)
Q Consensus       122 ~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~i  194 (343)
                      .+.++. |..  -...+.|..++.++-+.+.-|  .|+.+|+.+++......++...  ..++...+ +..... .++..
T Consensus        35 vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEE
T ss_pred             EEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeE
Confidence            344444 433  456678877888888888876  6999999999988887777543  34555543 333334 89999


Q ss_pred             EEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc-cc---ccEEEEEEEecCCCCCC
Q 019326          195 GIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA-HS---ARVKGIVVLTKNDGGST  270 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-h~---~~v~~~~~~~~~~~~~~  270 (343)
                      .+||..+.+.+.++.....=..++. ++..|+.......|+.+|..+.+....+.-. ..   ..++.|.+.. +.    
T Consensus       113 f~yd~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G~----  186 (264)
T PF05096_consen  113 FVYDPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-GK----  186 (264)
T ss_dssp             EEEETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-TE----
T ss_pred             EEEccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-CE----
Confidence            9999999999999987777777775 6677777777888999999888777666511 12   2345555542 21    


Q ss_pred             CCCCeEEEEEcCCCcEEEEeccCccccCCCccc-----------ccccccceeEEEcCCCC-ceecc
Q 019326          271 AENPYLVASASSDGVICVWDVRMAIKEKPLPLA-----------EAKTNSRLTCLAGSSTK-SFKRP  325 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~i~~~~~s~~~-~~~~~  325 (343)
                           ..|-.=....|..-|..++.......+.           ......-.+.+|+.+.. ++.+.
T Consensus       187 -----IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  187 -----IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             -----EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             -----EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence                 4444444445555566655322111111           11123457889996654 44443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.033  Score=47.88  Aligned_cols=197  Identities=16%  Similarity=0.239  Sum_probs=136.1

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR---DDCLAMVNLVR  161 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~wd~~~  161 (343)
                      .-..++.++.+.    +.++....++.|.+.|..+.+.......-. ....++++|+++.+.++..   ++++.+.|..+
T Consensus        75 ~p~~i~v~~~~~----~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t  149 (381)
T COG3391          75 YPAGVAVNPAGN----KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT  149 (381)
T ss_pred             cccceeeCCCCC----eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence            345677777772    456666667899999988777666665333 5678999999977776665   68999999998


Q ss_pred             CceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEE-E----ecCCcceEEeeec-CCCeEEEEeC-C-
Q 019326          162 GRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLC-E----LDGKKRILCAAPG-ENGVLFTGGE-D-  231 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~-~----~~~~~~i~~~~~~-~~~~l~~~~~-d-  231 (343)
                      ++.............++++|+++.++.+  .++.+.++|.......+ .    ..-......+.+. ++.+++.... + 
T Consensus       150 ~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         150 NKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             CeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            8887776665555889999999988888  58999999977766664 1    2212222334444 4454443333 2 


Q ss_pred             -CcEEEEECCCCceeEE-ecccccccEEEEEEEecCCCCCCCCCCeEEEEE-cCCCcEEEEeccCccc
Q 019326          232 -RSITAWDTNSGKVAYC-IEDAHSARVKGIVVLTKNDGGSTAENPYLVASA-SSDGVICVWDVRMAIK  296 (343)
Q Consensus       232 -g~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~  296 (343)
                       +.+...|..++..... ...+.. ....+.+.|.+.         .+... +..+.+.+-|..+...
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~---------~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGK---------AAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccC-CCCceeECCCCC---------EEEEEecCCCeEEEEeCCCCce
Confidence             6899999988876665 221222 556778888877         66666 4458888888887643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00037  Score=60.47  Aligned_cols=89  Identities=12%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcce-EEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEAS-LIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  207 (343)
                      ..+.-+.|+|.-..+|.+..+|.+.++.+. .+++..++ .+..+. +++|.|+|+.++++ .||+|++.|..++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467789999999999999999999999988 66677666 445565 89999999999999 999999999999988887


Q ss_pred             --ecCCcceEEeeec
Q 019326          208 --LDGKKRILCAAPG  220 (343)
Q Consensus       208 --~~~~~~i~~~~~~  220 (343)
                        +.....|.++.|+
T Consensus       100 ~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  100 FLFSVETDISKGIWD  114 (665)
T ss_pred             cccccccchheeecc
Confidence              4466778888774

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0036  Score=53.64  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=102.4

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCC--CCCceEEEeeCCCeEEEEECCCc-c-eeeeeeec
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNL--SVPRNLFSTSADGFVSIFDADPF-V-LLTSVKVH  129 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~-~-~~~~~~~~  129 (343)
                      +|.++.....++-.|++.|+.+.++..+  ..|+-+.+.|+...  ..+..-+.|-.|..|.-||.+-. . .+..-++|
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            4556777777999999999999999988  34888888887643  11233455667888999998532 1 22222222


Q ss_pred             c----ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce--eEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          130 K----KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR--SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       130 ~----~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      .    ....|++-..+| ++++|+.+|.|++||- .+..  .....++.+|..+..+.+|+++++..+..+.+.++.
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            2    244555555554 8999999999999996 4443  334556789999999999999999999888888764

>PHA02713 hypothetical protein; Provisional

Probab=97.54  E-value=0.011  Score=53.56  Aligned_cols=211  Identities=9%  Similarity=0.031  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------CeEEEEECCCcc--eeeeeeecccc
Q 019326           63 TIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVSIFDADPFV--LLTSVKVHKKG  132 (343)
Q Consensus        63 ~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~--~~~~~~~~~~~  132 (343)
                      .+..||..+++...  .+... .. -.+++.. ++     ..++.|+.+      ..+..||..+.+  .+..+......
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~-r~-~~~~a~l-~~-----~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~  344 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNH-II-NYASAIV-DN-----EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR  344 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcc-cc-ceEEEEE-CC-----EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc
Confidence            56778887764322  22211 11 1223333 33     577777753      357788876543  22222211111


Q ss_pred             EEEEEEecCCCEEEEEeCCC-----eEEEEEccCCceeEEEEcCCcceEE-EEeCCCCEEEEE-eC--------------
Q 019326          133 VNDLAVHHSGKLALTVGRDD-----CLAMVNLVRGRRSFYHKIGKEASLI-KFDGSGEKFFMV-TE--------------  191 (343)
Q Consensus       133 v~~i~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--------------  191 (343)
                      . +++ .-+++..+.||.++     .+..||..+++-......+.+.... ...-++...+.+ .+              
T Consensus       345 ~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        345 F-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             e-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccc
Confidence            1 122 22567777887653     4788998877644333333222211 112255655555 22              


Q ss_pred             ---------CcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC------CcEEEEECCC-Cc--eeEEeccc
Q 019326          192 ---------EKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED------RSITAWDTNS-GK--VAYCIEDA  251 (343)
Q Consensus       192 ---------~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~  251 (343)
                               ..+..||..+.+-...-.  ....-.+++..++.+.+.|+.+      ..+..||..+ .+  .+..++ .
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~  501 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-S  501 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-c
Confidence                     246678877654332211  1111122333366666677654      2467899886 33  333443 2


Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC--cEEEEeccCcc
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDG--VICVWDVRMAI  295 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~  295 (343)
                      .... .+++.. ++.         +.+.|+.||  .+..||..+.+
T Consensus       502 ~r~~-~~~~~~-~~~---------iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        502 RLSA-LHTILH-DNT---------IMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cccc-ceeEEE-CCE---------EEEEeeecceeehhhcCccccc
Confidence            2222 233332 222         888999888  67778887753

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=97.49  E-value=0.023  Score=49.44  Aligned_cols=264  Identities=13%  Similarity=0.047  Sum_probs=138.1

Q ss_pred             CCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           43 SPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        43 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      .+|..+..+ ...|..|+.+| |.+.+.+..+.......-....|..+.-...+      .+..|+..|..+.--.+.+-
T Consensus       206 k~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG------~lWiGTenGl~r~~l~rq~L  278 (671)
T COG3292         206 KAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG------ELWIGTENGLWRTRLPRQGL  278 (671)
T ss_pred             hhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC------CEEEeecccceeEecCCCCc
Confidence            567777666 77889999888 77877776433332222224566666555555      78888888765433333322


Q ss_pred             eeeeeeecc--ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeC--CCCEEEEE-eCCcEE
Q 019326          122 LLTSVKVHK--KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDG--SGEKFFMV-TEEKVG  195 (343)
Q Consensus       122 ~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-~~~~i~  195 (343)
                      .+...+.|.  ..|.++..+.+|. +.+++.++.+++-+-.-.........+ ..+..++..|  .+..+... +-+.+.
T Consensus       279 q~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~  357 (671)
T COG3292         279 QIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELM  357 (671)
T ss_pred             cccccccCCccccccceeeccCCC-EeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEE
Confidence            222222222  3566666666664 566666665554332211111111111 1111122222  11111111 233344


Q ss_pred             EEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCC-CceeEEecccccccEEEEEEEecCCCCCCCC
Q 019326          196 IHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNS-GKVAYCIEDAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       196 ~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                      +-+-.++..++...  ....|+..++..+..+..|+...-+..|+..+ +-.+.........+|..+.-.|++.      
T Consensus       358 van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns------  431 (671)
T COG3292         358 VANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS------  431 (671)
T ss_pred             EecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC------
Confidence            44555555554432  23456666665567788888875677787776 4444444434567788777766663      


Q ss_pred             CCeEEEEEcCCCcEEEEeccCccc-cCCCcccccccccceeEEEcCCCCceecc
Q 019326          273 NPYLVASASSDGVICVWDVRMAIK-EKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                          |..|+.+|.++. +.+.+.- ....+-......+.+..+...+++++-+.
T Consensus       432 ----LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a  480 (671)
T COG3292         432 ----LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA  480 (671)
T ss_pred             ----EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE
Confidence                888888885543 2222211 11111122333455777888888777543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0048  Score=57.31  Aligned_cols=109  Identities=19%  Similarity=0.228  Sum_probs=78.7

Q ss_pred             eEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee
Q 019326           45 ITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT  124 (343)
Q Consensus        45 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  124 (343)
                      +.+.+.-+..++.|+..|.+-..|....-.......+..++|++++|+.++     ..++.|-.+|.|.+||...++..+
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-----~~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-----SLLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-----ceeccccCCCcEEEEEccCCccee
Confidence            444444477888999999999988775422111122336899999999999     899999999999999999999998


Q ss_pred             eeeeccccEEEEE---EecCCCEEEEEeCCCeEEEEEcc
Q 019326          125 SVKVHKKGVNDLA---VHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus       125 ~~~~~~~~v~~i~---~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      .+..|..+...+-   +..++..++++...|.  +|.+.
T Consensus       167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            8887776555443   3445556777776665  55543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.45  E-value=0.037  Score=50.11  Aligned_cols=219  Identities=16%  Similarity=0.203  Sum_probs=115.2

Q ss_pred             eEEeccC------CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCC------CeEEEEEc
Q 019326            3 LIAGSYE------KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTD------DTIHLYDL   69 (343)
Q Consensus         3 l~~g~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~d------g~i~iwd~   69 (343)
                      +++|+.+      ..+..||..+.          .......+..... -.+++.. +...++||.|      .++..||.
T Consensus       288 ~~vGG~~~~~~~~~~ve~yd~~~~----------~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  288 VAVGGYNRQGQSLRSVECYDPKTN----------EWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             EEECCCCCCCcccceeEEecCCcC----------cEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecC
Confidence            3555555      35667776651          1223333332222 3344444 7788889988      34777888


Q ss_pred             CCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-----eEEEEECCCcc--eeeeeeeccccEEEEEEec
Q 019326           70 STSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-----FVSIFDADPFV--LLTSVKVHKKGVNDLAVHH  140 (343)
Q Consensus        70 ~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~  140 (343)
                      .+++-..  .+... .... .++.. ++     ...++|+.||     ++-.||..+.+  .+..+..........  .-
T Consensus       357 ~~~~W~~~a~M~~~-R~~~-~v~~l-~g-----~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~  426 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTK-RSDF-GVAVL-DG-----KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VL  426 (571)
T ss_pred             CCCceeccCCccCc-cccc-eeEEE-CC-----EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EE
Confidence            7765332  22222 1112 22222 33     5888899886     47778875532  333222111112222  22


Q ss_pred             CCCEEEEEeCC------CeEEEEEccCCceeEEEEcCCcceE--EEEeCCCCEEEEE-eCC-----cEEEEEcccceeEE
Q 019326          141 SGKLALTVGRD------DCLAMVNLVRGRRSFYHKIGKEASL--IKFDGSGEKFFMV-TEE-----KVGIHQAEDAKLLC  206 (343)
Q Consensus       141 ~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~-----~i~~~d~~~~~~~~  206 (343)
                      +|...++||.+      .++..||..+++..........-..  ++. -++...+++ .++     .+..||..+.+...
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            56777888754      4577888888875554444322222  222 244455555 343     26778887765444


Q ss_pred             Ee--cCCcceEEeeecCCCeEEEEeCCCc-----EEEEECCCCc
Q 019326          207 EL--DGKKRILCAAPGENGVLFTGGEDRS-----ITAWDTNSGK  243 (343)
Q Consensus       207 ~~--~~~~~i~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~  243 (343)
                      .-  .....-..++..++...++|+.||.     |..||..+.+
T Consensus       506 v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            32  2222222333336777788887754     6667766543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.38  E-value=0.00052  Score=52.14  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=62.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeee-eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSL-GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      +..++.|+.+|.|.+|+....... ..+... ...|.++--.-..    ..+..+++.||.|+.|++...+.+...-.|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~----~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRD----SSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccc----cceeEEeccCCceeeeccccCceeeeecccc
Confidence            678999999999999988732211 112222 2333333222111    2588899999999999999888777766666


Q ss_pred             -ccEEEEEEecCCCEEEEE--eCCCeEEEEEcc
Q 019326          131 -KGVNDLAVHHSGKLALTV--GRDDCLAMVNLV  160 (343)
Q Consensus       131 -~~v~~i~~~~~~~~l~~~--~~d~~i~~wd~~  160 (343)
                       .++........++.+..+  +.|..++.|++.
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence             344433334344444444  444555555544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.36  E-value=0.087  Score=46.06  Aligned_cols=233  Identities=13%  Similarity=0.140  Sum_probs=122.4

Q ss_pred             EEEec--CceEEEe-eCCC----eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC----------
Q 019326           47 TVAVS--GTAAASG-GTDD----TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD----------  109 (343)
Q Consensus        47 ~l~~~--~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----------  109 (343)
                      ..+++  ++++|.+ +..|    .++++|+++++.+...-..  ..-..+.|.+++     +.|+....+          
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~-----~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDG-----KGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTS-----SEEEEEECSTTTSS-CCGC
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCC-----CEEEEEEeCcccccccCCC
Confidence            34555  7766643 3333    4999999999876543222  222349999997     455444332          


Q ss_pred             -CeEEEEECCCccee--eeeeecccc--EEEEEEecCCCEEEEEeC---C-CeEEEEEccCC-----ceeEEEEcCCcce
Q 019326          110 -GFVSIFDADPFVLL--TSVKVHKKG--VNDLAVHHSGKLALTVGR---D-DCLAMVNLVRG-----RRSFYHKIGKEAS  175 (343)
Q Consensus       110 -g~i~iwd~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~l~~~~~---d-~~i~~wd~~~~-----~~~~~~~~~~~~~  175 (343)
                       ..|+.|.+.+...-  ..+......  ...+..++++++++....   + ..+.+.|+..+     ...........+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence             23788888665432  333333332  567889999998775443   2 35788888775     2222222222333


Q ss_pred             E-EEEeCCCCEEEEE----eCCcEEEEEccccee---E-EEecCCc--ceEEeeecCCCeEEEEeCCC--cEEEEECCCC
Q 019326          176 L-IKFDGSGEKFFMV----TEEKVGIHQAEDAKL---L-CELDGKK--RILCAAPGENGVLFTGGEDR--SITAWDTNSG  242 (343)
Q Consensus       176 ~-~~~~~~~~~~~~~----~~~~i~~~d~~~~~~---~-~~~~~~~--~i~~~~~~~~~~l~~~~~dg--~i~i~d~~~~  242 (343)
                      . +... .+.+++..    ..+.|...++.+...   . ..+.+..  .+..+....+.+++.-..++  .|+++++..+
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence            2 3333 44444444    245566677776542   2 2223333  46666664555666665555  4888998844


Q ss_pred             ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE-EcCC--CcEEEEeccCcc
Q 019326          243 KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS-ASSD--GVICVWDVRMAI  295 (343)
Q Consensus       243 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s-~~~d--g~i~vwd~~~~~  295 (343)
                      .....+...-.+.|..+...+..+        .+.++ .|.-  +++.-||+.+++
T Consensus       360 ~~~~~~~~p~~g~v~~~~~~~~~~--------~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  360 KESREIPLPEAGSVSGVSGDFDSD--------ELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEEEESSSSSEEEEEES-TT-S--------EEEEEEEETTEEEEEEEEETTTTC
T ss_pred             cEEeeecCCcceEEeccCCCCCCC--------EEEEEEeCCCCCCEEEEEECCCCC
Confidence            445444423334455544333322        13333 3322  567777777763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.34  E-value=0.13  Score=47.89  Aligned_cols=316  Identities=12%  Similarity=0.096  Sum_probs=162.6

Q ss_pred             CeeEEeccCCeEEEEEeecCCCCCCCCcceee-EEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeee---
Q 019326            1 MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTL-TQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSL---   75 (343)
Q Consensus         1 ~~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~---   75 (343)
                      ++.+.|..+|.+...-+...      ++.... .....+-+...-..|+.+- ...|++|+.-|.=++-.+.+....   
T Consensus       270 ~~yLl~d~~G~Lf~l~l~~~------~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy  343 (1096)
T KOG1897|consen  270 SRYLLGDEDGMLFKLLLSHT------GETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSY  343 (1096)
T ss_pred             cEEEEecCCCcEEEEEeecc------cccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCch
Confidence            35677888888877666521      111111 1112222455556666665 788999998887677666554322   


Q ss_pred             ----eEeccCCCCCeEEEEEeCCCCCCCCceEEEee---CCCeEEEEECCCc-ceeee--eeeccccEEEEE--EecCC-
Q 019326           76 ----GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS---ADGFVSIFDADPF-VLLTS--VKVHKKGVNDLA--VHHSG-  142 (343)
Q Consensus        76 ----~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~-~~~~~--~~~~~~~v~~i~--~~~~~-  142 (343)
                          .++..  -++|..++........ ...+++++   .||++++..-.-+ ..+..  +.+ -..++.+.  ++++- 
T Consensus       344 ~~ilet~~N--LgPI~Dm~Vvd~d~q~-q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d  419 (1096)
T KOG1897|consen  344 VVILETFVN--LGPIVDMCVVDLDRQG-QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD  419 (1096)
T ss_pred             hhhhhhccc--ccceeeEEEEeccccC-CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence                33333  3788888876544212 24555554   3899999864221 12222  222 23455665  43321 


Q ss_pred             CEEEEEeCCCeEEEEEccCC-ceeEEEEcCCcceEEEE-eCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeec
Q 019326          143 KLALTVGRDDCLAMVNLVRG-RRSFYHKIGKEASLIKF-DGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPG  220 (343)
Q Consensus       143 ~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~  220 (343)
                      .+++.+-.+. -++..+... +......+......+.. .-.++.++=.....|++++-.  .....+..+..++....+
T Consensus       420 ~ylvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p~~~ti~~~~  496 (1096)
T KOG1897|consen  420 NYLVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPPGKITIGVVS  496 (1096)
T ss_pred             cEEEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCCCceEEEEEe
Confidence            3555444333 333343222 11111111222222222 234555555567778888755  233344444444443333


Q ss_pred             -CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC-ccccC
Q 019326          221 -ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-AIKEK  298 (343)
Q Consensus       221 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~  298 (343)
                       +...++.++.++.+...++..+.....-.......|.|+.++|.++.+   ...++++.|.++..+.+--... .....
T Consensus       497 ~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~---~~s~~~aVG~Ws~~~~~l~~~pd~~~~~  573 (1096)
T KOG1897|consen  497 ANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP---NKSRLLAVGLWSDISMILTFLPDLILIT  573 (1096)
T ss_pred             ecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCC---CcceEEEEEeecceEEEEEECCCcceee
Confidence             455667777777787777776652222222345789999999886532   1234888888877665543322 21111


Q ss_pred             CCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          299 PLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       299 ~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                      ...+.....+..|.-..+-.|..|+..+.++|..
T Consensus       574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l  607 (1096)
T KOG1897|consen  574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL  607 (1096)
T ss_pred             eeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence            1111111122235555555667777777777743

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.30  E-value=0.092  Score=45.10  Aligned_cols=191  Identities=16%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCC-CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE-SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      +..++.+..+|.|.-.|.++++.+....... ...+..-.+..++      .++.++.++.++.+|.++++.+.......
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G------~i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG------KIYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC------eEEEecccceEEEEECCCCcEEEEEecCC
Confidence            6667777889999999999998766443320 1233333333356      68899999999999998999988887655


Q ss_pred             -ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCc----ceEEEEeCCCCEEEEEe--CCcEEEEEcccce
Q 019326          131 -KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKE----ASLIKFDGSGEKFFMVT--EEKVGIHQAEDAK  203 (343)
Q Consensus       131 -~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~  203 (343)
                       ..+..-..-.++ .+..++.++.+...|..++...........    +..-....++..++...  ++.+.-+|..++.
T Consensus       142 ~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         142 SPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             CeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence             111222222233 444444789999999998888766555432    11111122333333334  5567778888888


Q ss_pred             eEEEecCCcceEE-----e-eec-----CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          204 LLCELDGKKRILC-----A-APG-----ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       204 ~~~~~~~~~~i~~-----~-~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      .....+....+..     . ...     -+.-++.++.++.+...|..+++.+.++.
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            7777431111110     1 111     13344677778889999999999999988

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.30  E-value=0.075  Score=48.29  Aligned_cols=196  Identities=13%  Similarity=0.093  Sum_probs=104.6

Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe------CCC--eEEEEEccCCceeEEEEcCCcceEEEEe
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG------RDD--CLAMVNLVRGRRSFYHKIGKEASLIKFD  180 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|+.++...      .|.  .|.+++.  +..............-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGHSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCCCCCCceEC
Confidence            56655444332223322223334678899999998877665      243  4555554  2222333334457788999


Q ss_pred             CCCCEEEEEeCC-c-EEEE-----------EcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEE---EECCCCc
Q 019326          181 GSGEKFFMVTEE-K-VGIH-----------QAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITA---WDTNSGK  243 (343)
Q Consensus       181 ~~~~~~~~~~~~-~-i~~~-----------d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i---~d~~~~~  243 (343)
                      |+|..+++..++ . .++.           ++..+....  .....|..+.|+ ++..++... +|.|++   -....|+
T Consensus       406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            998877777333 2 2222           222222211  224579999999 455555443 477777   4444454


Q ss_pred             -ee---EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCC
Q 019326          244 -VA---YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       244 -~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                       .+   ..+...-...+.++.|..++.          |+.+..++.-.+|.+.-...... .+.......++..++.+++
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~----------L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDS----------LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCE----------EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc
Confidence             11   112212334467888988874          44555556556666543321111 1122223456778888775


Q ss_pred             C
Q 019326          320 K  320 (343)
Q Consensus       320 ~  320 (343)
                      .
T Consensus       552 ~  552 (591)
T PRK13616        552 T  552 (591)
T ss_pred             e
Confidence            3

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.25  E-value=0.084  Score=46.44  Aligned_cols=150  Identities=12%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             CCCeEEEEec-CceEEEee---CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           42 LSPITTVAVS-GTAAASGG---TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      -.+|..++|. |+.++-..   .+|.+++=|.   +.+    +. -..|..+.|.|-+....+.+| +.-....|.||.+
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----Gq-FEhV~GlsW~P~~~~~~paLL-AVQHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQ-FEHVHGLSWAPPCTADTPALL-AVQHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----ec-cceeeeeeecCcccCCCCceE-EEeccceEEEEEe
Confidence            4589999998 65544322   2233322211   122    22 356889999998643334444 4556678999998


Q ss_pred             C-----Ccceeeeeee-ccc----cEEEEEEecCCCEEEEEeCCCeEEEEEccCCce--eEEEEcCCcceEEEEeCCCCE
Q 019326          118 D-----PFVLLTSVKV-HKK----GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR--SFYHKIGKEASLIKFDGSGEK  185 (343)
Q Consensus       118 ~-----~~~~~~~~~~-~~~----~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~  185 (343)
                      .     ..+.+..-.. ...    --..+.|+|....|++-.....-.+++++....  .......+.|.|.+|.+||++
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence            4     2222211111 111    123567999888887776665555666654432  233455688999999999999


Q ss_pred             EEEEeC--CcEEEEEcc
Q 019326          186 FFMVTE--EKVGIHQAE  200 (343)
Q Consensus       186 ~~~~~~--~~i~~~d~~  200 (343)
                      ++++-+  =.-++||-.
T Consensus       170 LVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEeCCeEEEEEecCc
Confidence            999933  345677754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.24  E-value=0.1  Score=44.49  Aligned_cols=146  Identities=10%  Similarity=0.026  Sum_probs=73.7

Q ss_pred             CceEEEee------CCCeEEEEEcCCCeeeeEeccC--CCCCeEEEEEeCCCCCCCCceEEEeeC---------------
Q 019326           52 GTAAASGG------TDDTIHLYDLSTSSSLGAIHHH--ESSSVTSLAFYTPQNLSVPRNLFSTSA---------------  108 (343)
Q Consensus        52 ~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~~~l~s~~~---------------  108 (343)
                      |+.++++-      .-|-+.+.|-++.+........  ...--..+-|.|..     +.++|...               
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-----nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-----NVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-----TEEEE-B---HHHHTT---TTTH
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-----CEEEEeccCChhhcccCCChhHh
Confidence            66777642      2345788888877766666542  12344567777776     56666543               


Q ss_pred             -----CCeEEEEECCCcceeeeeeeccc--cEEEEEEecC--CCE-EEEEeCCCeEEEEEc-cCCce----eEEEE----
Q 019326          109 -----DGFVSIFDADPFVLLTSVKVHKK--GVNDLAVHHS--GKL-ALTVGRDDCLAMVNL-VRGRR----SFYHK----  169 (343)
Q Consensus       109 -----dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~--~~~-l~~~~~d~~i~~wd~-~~~~~----~~~~~----  169 (343)
                           ..++.+||+.+.+.++++..-..  ....+.|..+  ..+ ++.+....+|..|-- ..++-    +....    
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence                 36899999999999999875432  4556777554  333 333334445544433 33331    11111    


Q ss_pred             -------c-------CCcceEEEEeCCCCEEEEE--eCCcEEEEEcccc
Q 019326          170 -------I-------GKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDA  202 (343)
Q Consensus       170 -------~-------~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~  202 (343)
                             .       +.-++.+.+|.|.++|.++  ..|.++.||+...
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                   0       2335778999999999888  8999999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.23  E-value=0.06  Score=41.52  Aligned_cols=206  Identities=13%  Similarity=0.117  Sum_probs=113.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeE-eccCCCCCeEEEEEeCCCCCCCCceEEE-eeCCCeEEEEECC--Ccceeeeee
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGA-IHHHESSSVTSLAFYTPQNLSVPRNLFS-TSADGFVSIFDAD--PFVLLTSVK  127 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~--~~~~~~~~~  127 (343)
                      +.++.+--..|.|.-||..+.+..+. +.+.   +..++.+--.+.   ++.+++ ++..-.|.-||..  .....+++.
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p---~~ag~ilpv~~~---~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~  100 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP---PSAGFILPVEGG---PQEFAVGCGSKFVIVNWDGVSESAKVYRTLF  100 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC---cceeEEEEecCC---CceEEEeecceEEEEEcccccceeeeeeecc
Confidence            55666666667788899887654332 3222   123333322221   233333 3333344456632  222222221


Q ss_pred             e-----ccccEEEEEEecCCCEEEEEeCC---------CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eC
Q 019326          128 V-----HKKGVNDLAVHHSGKLALTVGRD---------DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TE  191 (343)
Q Consensus       128 ~-----~~~~v~~i~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  191 (343)
                      .     .+...+.-..+|+|++++-.-.|         |.++.|-.. ++.......-.-.+.++|+.+.+.+...  .+
T Consensus       101 ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  101 EVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             ccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCc
Confidence            1     13355666678999884432222         334444321 1111112222334568899888888777  45


Q ss_pred             CcEEEEE--cccce-----eEEEecCCcc-----eEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEE
Q 019326          192 EKVGIHQ--AEDAK-----LLCELDGKKR-----ILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       192 ~~i~~~d--~~~~~-----~~~~~~~~~~-----i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                      -.|.-||  ..++.     .+..++...+     .-.++.. .+++.++.-..++|..+|..+|+.+.++. -....|++
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qits  258 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITS  258 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEE
Confidence            5665676  55543     3333332111     1223333 56677788888999999999999999999 67889999


Q ss_pred             EEEEecC
Q 019326          259 IVVLTKN  265 (343)
Q Consensus       259 ~~~~~~~  265 (343)
                      ++|-..+
T Consensus       259 ccFgGkn  265 (310)
T KOG4499|consen  259 CCFGGKN  265 (310)
T ss_pred             EEecCCC
Confidence            9997664

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=97.15  E-value=0.043  Score=38.39  Aligned_cols=113  Identities=11%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCC--------ceeEEEEcCCcceEEEEeC-----CCCEEEEEeCCcEEEEEcccc
Q 019326          136 LAVHHSGKLALTVGRDDCLAMVNLVRG--------RRSFYHKIGKEASLIKFDG-----SGEKFFMVTEEKVGIHQAEDA  202 (343)
Q Consensus       136 i~~~~~~~~l~~~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~d~~~~  202 (343)
                      -.|......|++++.-|.|.+++....        ..+........+.+++-.+     ....|+.++...+..||+.+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            345555668888889999999987633        3556777788888876644     456788889999999999988


Q ss_pred             eeEEEecCCcceEEeeec---C-CCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          203 KLLCELDGKKRILCAAPG---E-NGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       203 ~~~~~~~~~~~i~~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      ..+..-.-+..+.++.+.   . ..-++..+.+..|.-||..-.+..++.
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            777666666777777764   1 233444445677888887755555544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.088  Score=41.93  Aligned_cols=206  Identities=14%  Similarity=0.172  Sum_probs=120.0

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCe-EEEEECCCcceeeeeeecccc--EEEEEEecCCCEEEEEeCC-----CeEE
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGF-VSIFDADPFVLLTSVKVHKKG--VNDLAVHHSGKLALTVGRD-----DCLA  155 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~d-----~~i~  155 (343)
                      ..-..++|+|..    +.-++.+-.-|+ ..++|..+.+...++...++.  --.=.|+|+|.+|...-.|     |.|-
T Consensus        68 aR~Hgi~~~p~~----~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          68 ARGHGIAFHPAL----PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             cccCCeecCCCC----cceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEE
Confidence            344568888877    356666666665 567898887766665433321  1223689999998876543     7799


Q ss_pred             EEEccCCce-eEEE-EcCCcceEEEEeCCCCEEEEEeCC-------------------cEEEEEcccceeEEEec-----
Q 019326          156 MVNLVRGRR-SFYH-KIGKEASLIKFDGSGEKFFMVTEE-------------------KVGIHQAEDAKLLCELD-----  209 (343)
Q Consensus       156 ~wd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~-----  209 (343)
                      +||.+.+-. +-.+ .+.-....+.+.+||+.++.+..|                   .+.+.|..++.++.+..     
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            999885421 2222 233456778999999999988432                   24555666666665544     


Q ss_pred             CCcceEEeeecCCCeEEEEeC-CCc-----EEEEECCCCceeEEecc------cccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          210 GKKRILCAAPGENGVLFTGGE-DRS-----ITAWDTNSGKVAYCIED------AHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       210 ~~~~i~~~~~~~~~~l~~~~~-dg~-----i~i~d~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      +.-.+..++..+++.++.|+. .|-     -.+=-...++++.-+..      .....|-+++.+....         ++
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g---------lV  294 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG---------LV  294 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC---------eE
Confidence            234566666654444444432 111     11111123444443331      2335677888776554         45


Q ss_pred             EEEc-CCCcEEEEeccCccccCCCcc
Q 019326          278 ASAS-SDGVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       278 ~s~~-~dg~i~vwd~~~~~~~~~~~~  302 (343)
                      +..+ .-+...+||..++......++
T Consensus       295 ~lTSP~GN~~vi~da~tG~vv~~a~l  320 (366)
T COG3490         295 ALTSPRGNRAVIWDAATGAVVSEAAL  320 (366)
T ss_pred             EEecCCCCeEEEEEcCCCcEEecccc
Confidence            4444 445678899999864443333

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.17  Score=44.27  Aligned_cols=190  Identities=13%  Similarity=0.115  Sum_probs=106.5

Q ss_pred             eEEEEEeCCCCCCCCceEE-EeeCCC----eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC--------
Q 019326           86 VTSLAFYTPQNLSVPRNLF-STSADG----FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD--------  152 (343)
Q Consensus        86 v~~l~~~~~~~~~~~~~l~-s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--------  152 (343)
                      +....++|++     ++++ +.+..|    .++++|+++++.+...-.. ..-..+.|.++++.|+....+.        
T Consensus       126 ~~~~~~Spdg-----~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  126 LGGFSVSPDG-----KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEETTTS-----SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred             eeeeeECCCC-----CEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCC
Confidence            3357889998     5555 434545    5999999998766533111 1223499999988776665433        


Q ss_pred             ---eEEEEEccCCcee--EEEEcC--Cc-ceEEEEeCCCCEEEEE--e--C-CcEEEEEcccc-----eeEEEecCCcce
Q 019326          153 ---CLAMVNLVRGRRS--FYHKIG--KE-ASLIKFDGSGEKFFMV--T--E-EKVGIHQAEDA-----KLLCELDGKKRI  214 (343)
Q Consensus       153 ---~i~~wd~~~~~~~--~~~~~~--~~-~~~~~~~~~~~~~~~~--~--~-~~i~~~d~~~~-----~~~~~~~~~~~i  214 (343)
                         .|+.|.+.+....  ..+...  .. ...+..++++++++..  .  + ..+.+.++...     ...........+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence               3778887766432  233222  22 4568889999998876  2  3 45777787764     233333333333


Q ss_pred             E-EeeecCCCeEEEEe---CCCcEEEEECCCCce---eEEecccccc--cEEEEEEEecCCCCCCCCCCeEEEEEcCCC-
Q 019326          215 L-CAAPGENGVLFTGG---EDRSITAWDTNSGKV---AYCIEDAHSA--RVKGIVVLTKNDGGSTAENPYLVASASSDG-  284 (343)
Q Consensus       215 ~-~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg-  284 (343)
                      . .+....+.+++...   ..+.|...++.+...   ...+. .|..  .+..+....+.          +++....++ 
T Consensus       280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~----------Lvl~~~~~~~  348 (414)
T PF02897_consen  280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFKDY----------LVLSYRENGS  348 (414)
T ss_dssp             EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTE----------EEEEEEETTE
T ss_pred             EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEECCE----------EEEEEEECCc
Confidence            3 33333333333332   246677778877652   22343 4555  45566554332          555555555 


Q ss_pred             -cEEEEecc
Q 019326          285 -VICVWDVR  292 (343)
Q Consensus       285 -~i~vwd~~  292 (343)
                       .|+++++.
T Consensus       349 ~~l~v~~~~  357 (414)
T PF02897_consen  349 SRLRVYDLD  357 (414)
T ss_dssp             EEEEEEETT
T ss_pred             cEEEEEECC
Confidence             57888988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.09  E-value=0.15  Score=43.50  Aligned_cols=239  Identities=15%  Similarity=0.115  Sum_probs=123.3

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCC---
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE---   82 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---   82 (343)
                      ..+.+.+||+++.          +..++..   ....+....|+  |+.++... ++.|.+++..+++..+......   
T Consensus        21 ~~~~y~i~d~~~~----------~~~~l~~---~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i   86 (353)
T PF00930_consen   21 FKGDYYIYDIETG----------EITPLTP---PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGI   86 (353)
T ss_dssp             EEEEEEEEETTTT----------EEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTE
T ss_pred             cceeEEEEecCCC----------ceEECcC---CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeE
Confidence            3456788888761          1222222   14567778888  77777665 5789999987775443221110   


Q ss_pred             -------------CCCeEEEEEeCCCCCCCCceEEEeeCC-CeE-----------------------------------E
Q 019326           83 -------------SSSVTSLAFYTPQNLSVPRNLFSTSAD-GFV-----------------------------------S  113 (343)
Q Consensus        83 -------------~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i-----------------------------------~  113 (343)
                                   -+.-..+.|+|++     ++|+....| ..|                                   .
T Consensus        87 ~nG~~dwvyeEEv~~~~~~~~WSpd~-----~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~  161 (353)
T PF00930_consen   87 YNGVPDWVYEEEVFDRRSAVWWSPDS-----KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLF  161 (353)
T ss_dssp             EESB--HHHHHHTSSSSBSEEE-TTS-----SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEE
T ss_pred             EcCccceeccccccccccceEECCCC-----CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEE
Confidence                         1233568899998     555544332 222                                   2


Q ss_pred             EEECCCcceeee--e---eeccccEEEEEEecCCCEEEEEe--CC---CeEEEEEccCCceeEEEE--cCCcc---eEEE
Q 019326          114 IFDADPFVLLTS--V---KVHKKGVNDLAVHHSGKLALTVG--RD---DCLAMVNLVRGRRSFYHK--IGKEA---SLIK  178 (343)
Q Consensus       114 iwd~~~~~~~~~--~---~~~~~~v~~i~~~~~~~~l~~~~--~d---~~i~~wd~~~~~~~~~~~--~~~~~---~~~~  178 (343)
                      ++|+.+++....  .   ......+..+.|.+++..|+..-  .+   -.+.++|..++.......  ....+   ....
T Consensus       162 v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~  241 (353)
T PF00930_consen  162 VVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH  241 (353)
T ss_dssp             EEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred             EEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence            334433332110  0   01223577888988887343332  22   236677887765433322  22222   3455


Q ss_pred             Ee-CCCCEEEEE--eCCc--EEEEEcccceeEEEecCCcceEE-eeec-C-CCeEEEEeCC----CcEEEEECCCCceeE
Q 019326          179 FD-GSGEKFFMV--TEEK--VGIHQAEDAKLLCELDGKKRILC-AAPG-E-NGVLFTGGED----RSITAWDTNSGKVAY  246 (343)
Q Consensus       179 ~~-~~~~~~~~~--~~~~--i~~~d~~~~~~~~~~~~~~~i~~-~~~~-~-~~~l~~~~~d----g~i~i~d~~~~~~~~  246 (343)
                      +. +++..++..  .+|.  |.+++...+.....-.+.-.|.. +.++ . +.+.+++..+    ..|+.-++..+..+.
T Consensus       242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~  321 (353)
T PF00930_consen  242 FLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK  321 (353)
T ss_dssp             E-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred             cccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence            54 666655555  4454  55566666664433235566655 3344 2 3355566653    356666666344566


Q ss_pred             EecccccccEEEEEEEecCC
Q 019326          247 CIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~  266 (343)
                      .+. .....-..+.|+|++.
T Consensus       322 ~LT-~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  322 CLT-CEDGDHYSASFSPDGK  340 (353)
T ss_dssp             ESS-TTSSTTEEEEE-TTSS
T ss_pred             ecc-CCCCCceEEEECCCCC
Confidence            666 2222225888998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.055  Score=40.96  Aligned_cols=170  Identities=12%  Similarity=0.033  Sum_probs=105.8

Q ss_pred             ceEEEeeCC--CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCceeEEEEcCCcceEE
Q 019326          101 RNLFSTSAD--GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLA-LTVGRDDCLAMVNLVRGRRSFYHKIGKEASLI  177 (343)
Q Consensus       101 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  177 (343)
                      .++.+.+.-  ..|++||+.+++.+.+-......+..=-...-+..+ ...-.+|.-..+|.++-+.+..+..++.-..+
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgL  136 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGL  136 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceee
Confidence            466666654  479999999988776654321111111111112222 23345788889999988888777777766666


Q ss_pred             EEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CC---cceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec-
Q 019326          178 KFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GK---KRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE-  249 (343)
Q Consensus       178 ~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~---~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  249 (343)
                      +.  ++..++.+ ....++.-|..+.....++.   ..   ..++.+.|-++.+.+-.-.+..|...|..+|+.+..+. 
T Consensus       137 t~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl  214 (262)
T COG3823         137 TS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL  214 (262)
T ss_pred             ec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence            54  45556666 66677777887766555544   22   33455666666666666666677777888887766544 


Q ss_pred             ----------ccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          250 ----------DAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       250 ----------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                                ..|....+++++.+..+        ++++||
T Consensus       215 S~L~~~~~~~~~~~nvlNGIA~~~~~~--------r~~iTG  247 (262)
T COG3823         215 SGLLKELNLDKSNDNVLNGIAHDPQQD--------RFLITG  247 (262)
T ss_pred             cCCchhcCccccccccccceeecCcCC--------eEEEec
Confidence                      23445678888887764        266666

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.06  E-value=0.16  Score=43.33  Aligned_cols=186  Identities=10%  Similarity=0.052  Sum_probs=93.6

Q ss_pred             ceEEEee-CCCeEEEEECCC----cceeeeeee---cc----ccEEEEEEecCCCEEEEEeC------CCeEEEEEccCC
Q 019326          101 RNLFSTS-ADGFVSIFDADP----FVLLTSVKV---HK----KGVNDLAVHHSGKLALTVGR------DDCLAMVNLVRG  162 (343)
Q Consensus       101 ~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~i~~~~~~~~l~~~~~------d~~i~~wd~~~~  162 (343)
                      ++|+..+ ..+.|+|.|+.+    .+..+.++.   +.    .....+...|+|+.++++-.      -|.+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            4566555 678999999863    344444442   11    23345666788888877533      256888888877


Q ss_pred             ceeEEEEcCCc----ceEEEEeCCCCEEEEEe---------------------CCcEEEEEcccceeEEEecCC---cce
Q 019326          163 RRSFYHKIGKE----ASLIKFDGSGEKFFMVT---------------------EEKVGIHQAEDAKLLCELDGK---KRI  214 (343)
Q Consensus       163 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---------------------~~~i~~~d~~~~~~~~~~~~~---~~i  214 (343)
                      +..........    ...+-+.|..+.++++.                     ...+.+||+.+.+.++++...   ...
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p  247 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP  247 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence            76666555322    34477788888888773                     346999999999999999833   335


Q ss_pred             EEeeec--CC-C-eEEEEeCCCcEEEEEC-CCCc----eeEEeccc----------------ccccEEEEEEEecCCCCC
Q 019326          215 LCAAPG--EN-G-VLFTGGEDRSITAWDT-NSGK----VAYCIEDA----------------HSARVKGIVVLTKNDGGS  269 (343)
Q Consensus       215 ~~~~~~--~~-~-~l~~~~~dg~i~i~d~-~~~~----~~~~~~~~----------------h~~~v~~~~~~~~~~~~~  269 (343)
                      ..+.|.  +. . -++.+....+|..|-- ..++    .+.++...                -..-|+.|.++.+.+   
T Consensus       248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr---  324 (461)
T PF05694_consen  248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR---  324 (461)
T ss_dssp             EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS----
T ss_pred             EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC---
Confidence            566665  22 2 2333334555555533 3332    23333200                024578888888876   


Q ss_pred             CCCCCeEEE-EEcCCCcEEEEeccCcc
Q 019326          270 TAENPYLVA-SASSDGVICVWDVRMAI  295 (343)
Q Consensus       270 ~~~~~~~l~-s~~~dg~i~vwd~~~~~  295 (343)
                            +|. +.=.+|.|+.||+..+.
T Consensus       325 ------fLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  325 ------FLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ------EEEEEETTTTEEEEEE-SSTT
T ss_pred             ------EEEEEcccCCcEEEEecCCCC
Confidence                  555 45568999999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.05  E-value=0.28  Score=46.04  Aligned_cols=152  Identities=9%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE-------------EEEEeCCCCCCCCceEEEeeC----------
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT-------------SLAFYTPQNLSVPRNLFSTSA----------  108 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-------------~l~~~~~~~~~~~~~l~s~~~----------  108 (343)
                      +..++.++.|+.+.-.|.++|+....+...  +.|.             .+.-.|-   .....++.|+.          
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~---V~~g~VIvG~~v~d~~~~~~~  334 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPL---VAGTTVVIGGRVADNYSTDEP  334 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCE---EECCEEEEEecccccccccCC
Confidence            458888999999999999999998877432  2221             0000110   00135666643          


Q ss_pred             CCeEEEEECCCcceeeeeeec---------cc--------cE-EEEEEecCCCEEEEEe------------------CCC
Q 019326          109 DGFVSIFDADPFVLLTSVKVH---------KK--------GV-NDLAVHHSGKLALTVG------------------RDD  152 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~---------~~--------~v-~~i~~~~~~~~l~~~~------------------~d~  152 (343)
                      +|.|+-+|.++++.+..+..-         .+        .+ ..+++++....++...                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            688999999999988877521         00        11 2234444433333321                  235


Q ss_pred             eEEEEEccCCceeEEEEc-CC---------cceEEEEeC-CCC---EEEEE-eCCcEEEEEcccceeEEEe
Q 019326          153 CLAMVNLVRGRRSFYHKI-GK---------EASLIKFDG-SGE---KFFMV-TEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~~-~~---------~~~~~~~~~-~~~---~~~~~-~~~~i~~~d~~~~~~~~~~  208 (343)
                      .|.-.|.++|+....+.. ++         +...+.+.. +++   .++.+ .+|.+.++|.++++.+...
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            677888889987765544 22         233334433 553   55555 8999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.05  E-value=0.093  Score=40.55  Aligned_cols=130  Identities=15%  Similarity=0.084  Sum_probs=80.8

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCC----------CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEE-EEEeCCC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSAD----------GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLA-LTVGRDD  152 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~  152 (343)
                      ...+.-..+|++     ++ +.|...          |.++.|-...  .+..+...-..-+.++|+.+.+.+ ++-+.+-
T Consensus       109 nR~NDgkvdP~G-----ry-y~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  109 NRLNDGKVDPDG-----RY-YGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNY  180 (310)
T ss_pred             cccccCccCCCC-----ce-eeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCce
Confidence            445556677888     55 444432          3344443321  122222222334668888776544 4556677


Q ss_pred             eEEEEE--ccCCcee-----EEEEc-----CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEee
Q 019326          153 CLAMVN--LVRGRRS-----FYHKI-----GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAA  218 (343)
Q Consensus       153 ~i~~wd--~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~  218 (343)
                      .|..||  ..+|...     .....     ....-.+++..+|++.+++ ..+++...|..+++.+.++. ....++|++
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            787787  5555422     11111     1223446777889988888 99999999999999999998 557799999


Q ss_pred             ecC
Q 019326          219 PGE  221 (343)
Q Consensus       219 ~~~  221 (343)
                      |..
T Consensus       261 FgG  263 (310)
T KOG4499|consen  261 FGG  263 (310)
T ss_pred             ecC
Confidence            963

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.93  E-value=0.0039  Score=35.02  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL  122 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  122 (343)
                      ...|.+++|+|..     .+|+.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~m-----dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTM-----DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCC-----CEEEEEECCCeEEEEEC-CCcC
Confidence            4679999999999     79999999999999998 4443

>PHA03098 kelch-like protein; Provisional

Probab=96.89  E-value=0.13  Score=46.62  Aligned_cols=183  Identities=10%  Similarity=0.058  Sum_probs=88.5

Q ss_pred             ecCceEEEeeCCC------eEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEE
Q 019326           50 VSGTAAASGGTDD------TIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFD  116 (343)
Q Consensus        50 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd  116 (343)
                      ..+..++.||.++      .+..||..+.+....  +... .... +++.. ++     ..++.|+.+     ..+..||
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~-~~~~~-~~-----~lyv~GG~~~~~~~~~v~~yd  364 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNP-GVTVF-NN-----RIYVIGGIYNSISLNTVESWK  364 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccc-eEEEE-CC-----EEEEEeCCCCCEecceEEEEc
Confidence            3366667776543      477888877654321  1111 1222 22222 34     577777765     3577788


Q ss_pred             CCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC------CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEE
Q 019326          117 ADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD------DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKF  186 (343)
Q Consensus       117 ~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  186 (343)
                      ..+.+  ....+....... +++ .-+++..+.||.+      +.+..||..+++-......+.+  ..++ ...++..+
T Consensus       365 ~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iy  441 (534)
T PHA03098        365 PGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIY  441 (534)
T ss_pred             CCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEE
Confidence            76543  222221111111 112 2356667777632      4578899887654332222211  1122 22344555


Q ss_pred             EEE-eC--------CcEEEEEcccceeEEEe--cCCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          187 FMV-TE--------EKVGIHQAEDAKLLCEL--DGKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       187 ~~~-~~--------~~i~~~d~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      +.+ ..        ..+.+||..+.+-...-  ..+..-.+++..++.+++.|+.+     ..+.+||..+.+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            554 21        13778888776533221  11111112222256666667654     467888877553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.86  E-value=0.41  Score=44.91  Aligned_cols=174  Identities=11%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             eEEEEECCCcceeeeeeecc----ccEEEEEEecC-CCEEEEEeC----------CCeEEEEEccCCcee-EEEEcCCcc
Q 019326          111 FVSIFDADPFVLLTSVKVHK----KGVNDLAVHHS-GKLALTVGR----------DDCLAMVNLVRGRRS-FYHKIGKEA  174 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~-~~~l~~~~~----------d~~i~~wd~~~~~~~-~~~~~~~~~  174 (343)
                      .++++|-.+.+.+...+...    -.+.+..|..| +.++++|..          .|.|.++.....+.+ ......-..
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            36677776665544333111    14555568777 567777653          577888887773322 222222222


Q ss_pred             eEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECC--CCceeEEecc
Q 019326          175 SLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTN--SGKVAYCIED  250 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~  250 (343)
                      ...++..-+..++++-+..+++|++.+.+.++.-. +..++..+... .++.+++|..-+.+.+...+  .|.....-++
T Consensus       831 av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD  910 (1096)
T KOG1897|consen  831 AVYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD  910 (1096)
T ss_pred             ceeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence            23333344556667788899999999886555433 66777777766 67899999988887775554  4445555555


Q ss_pred             cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          251 AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       251 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .+....+++.+..+.          .++-+-.+|.+.+-..++.
T Consensus       911 ~~p~Wmtaveil~~d----------~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  911 YNPNWMTAVEILDDD----------TYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             hCccceeeEEEecCc----------eEEeecccccEEEEEecCC
Confidence            688899999888776          5666777888888776654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.85  E-value=0.2  Score=41.22  Aligned_cols=227  Identities=12%  Similarity=0.120  Sum_probs=114.7

Q ss_pred             CeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEecc--CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           44 PITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH--HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        44 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      ...++.|.++....++..+. .+...+.|+.-..+..  .-......+....+.      ....++..|.|+.= .+.++
T Consensus        63 ~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~------~~~l~~~~G~iy~T-~DgG~  134 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG------SAELAGDRGAIYRT-TDGGK  134 (302)
T ss_dssp             EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETT------EEEEEETT--EEEE-SSTTS
T ss_pred             eEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC------cEEEEcCCCcEEEe-CCCCC
Confidence            36677887444444555563 3444454543333321  102334444444443      33334455554322 22232


Q ss_pred             ee-eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEE-
Q 019326          122 LL-TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQ-  198 (343)
Q Consensus       122 ~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-  198 (343)
                      .= .....-.+.+..+.-+++|++++++.......-||.-... ..........+..+.|.|++...+++..+.++.=+ 
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~  214 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD  214 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC
Confidence            21 1223344678888899999988888777667788754332 33344456889999999999988888888888877 


Q ss_pred             cccceeEEE--ec---CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc--ccccEEEEEEEecCCCCCCC
Q 019326          199 AEDAKLLCE--LD---GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA--HSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       199 ~~~~~~~~~--~~---~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~  271 (343)
                      .........  .+   ....+..+++.+.+.+.+++..|.+ +.....|+.-...+..  -..-+..+.|.+..      
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~------  287 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD------  287 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT------
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC------
Confidence            233333322  11   2334788899876666666667755 4566667665555422  23457888888765      


Q ss_pred             CCCeEEEEEcCCCcEEEE
Q 019326          272 ENPYLVASASSDGVICVW  289 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vw  289 (343)
                          .-...+.+|.|.-|
T Consensus       288 ----~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  288 ----KGFVLGQDGVLLRY  301 (302)
T ss_dssp             ----EEEEE-STTEEEEE
T ss_pred             ----ceEEECCCcEEEEe
Confidence                46666678877655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.80  E-value=0.095  Score=36.74  Aligned_cols=106  Identities=11%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             ceEEEeeCCCeEEEEECCCc--------ceeeeeeeccccEEEEEEec-----CCCEEEEEeCCCeEEEEEccCCceeEE
Q 019326          101 RNLFSTSADGFVSIFDADPF--------VLLTSVKVHKKGVNDLAVHH-----SGKLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                      ..|+.++.-|.|.|++....        ..+..+. -...|++++-.+     +...|+.|+ ...+..||+..+..++.
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFY   88 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhh
Confidence            57888888999999987532        2334443 456777776544     234566655 46799999999998888


Q ss_pred             EEcCCcceEEEEeC----CCCEEEEEeCCcEEEEEcccceeEEEe
Q 019326          168 HKIGKEASLIKFDG----SGEKFFMVTEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       168 ~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~d~~~~~~~~~~  208 (343)
                      ...+..+.++.+-.    ..+.++++.+..|.-||....+...+.
T Consensus        89 ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   89 KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            88888888877733    344555557777777776665555443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=96.78  E-value=0.38  Score=43.30  Aligned_cols=249  Identities=11%  Similarity=0.116  Sum_probs=124.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-Cc--eEEEeeCCC--eEEEEEcCCCeeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GT--AAASGGTDD--TIHLYDLSTSSSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg--~i~iwd~~~~~~~~   76 (343)
                      +++.+..+|.++...+...      +.......+..+   ....+++++- ..  +|+.|+.-|  .+..|....-+.+.
T Consensus       224 ~~lL~~e~G~l~~l~l~~~------~~~i~i~~~g~~---~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~  294 (504)
T PF10433_consen  224 RILLQDEDGDLYLLTLDND------GGSISITYLGTL---CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLD  294 (504)
T ss_dssp             EEEEEETTSEEEEEEEEEE------EEEEEEEEEEE-----S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEEC------CCeEEEEEcCCc---CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence            5778889999988888761      111223333221   4455666666 55  888887744  45555545556666


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCC-----ceEEEee---CCCeEEEEECCCcce--eeeeeec--cccEEEEEEec-CCC
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVP-----RNLFSTS---ADGFVSIFDADPFVL--LTSVKVH--KKGVNDLAVHH-SGK  143 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~-----~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~i~~~~-~~~  143 (343)
                      .+..-  ++|..+++.+......+     ..|++++   .+|.+++..-.-+-.  .......  -..++.+.... +..
T Consensus       295 ~~~N~--~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~  372 (504)
T PF10433_consen  295 SLPNW--GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHS  372 (504)
T ss_dssp             EE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBS
T ss_pred             eccCc--CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCce
Confidence            77665  89999999754221111     0455554   477888875421111  1111111  22444454433 245


Q ss_pred             EEEEEeCCCeEEEEEcc---CCceeEEE---EcCCcceEEEEeC-CCCEEEEEeCCcEEEEEcccceeEEEec--CCcce
Q 019326          144 LALTVGRDDCLAMVNLV---RGRRSFYH---KIGKEASLIKFDG-SGEKFFMVTEEKVGIHQAEDAKLLCELD--GKKRI  214 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~---~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~i  214 (343)
                      +|+....+ .-+++.+.   ....+...   .+......+.... .+..++=.....|++.+....+......  ....|
T Consensus       373 ~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I  451 (504)
T PF10433_consen  373 YLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSII  451 (504)
T ss_dssp             EEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---
T ss_pred             EEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeE
Confidence            66665554 44455553   23322111   1111111121111 2555555577889999888777766553  45556


Q ss_pred             EEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec-c---cccccEEEEEEEe
Q 019326          215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE-D---AHSARVKGIVVLT  263 (343)
Q Consensus       215 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~h~~~v~~~~~~~  263 (343)
                      .+.+. .+.+++.+..++.+..+.+.......... .   .....|.++...|
T Consensus       452 ~~a~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  452 VAASI-NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEE-SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEE-CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            66666 55667777778889999887665543322 1   1456788877665

...

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.75  E-value=0.32  Score=42.02  Aligned_cols=140  Identities=8%  Similarity=0.051  Sum_probs=92.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCc-----eeEEEEcCCcceEEEEeC-----CCCEEEEEeCCcEEEEEcccce--------
Q 019326          142 GKLALTVGRDDCLAMVNLVRGR-----RSFYHKIGKEASLIKFDG-----SGEKFFMVTEEKVGIHQAEDAK--------  203 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~d~~~~~--------  203 (343)
                      ...+++|+..|.+++|+.....     .+.......+|..+....     ....+++-.-..+.+|.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            3689999999999999986543     445566677877776543     3345566699999999884221        


Q ss_pred             --eEEEecCC--cceEEee---ec--C-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          204 --LLCELDGK--KRILCAA---PG--E-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       204 --~~~~~~~~--~~i~~~~---~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                        ....+.|.  .....++   |.  . ..++.+-+.||.+.+|+-+.-.....++  ...-...+.+.+..+       
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tD-------  187 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTD-------  187 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCC-------
Confidence              11122232  2222233   22  2 3588889999999999977544333343  233345567888777       


Q ss_pred             CeEEEEEcCCCcEEEEecc
Q 019326          274 PYLVASASSDGVICVWDVR  292 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~  292 (343)
                        .+++++.+..|.-|...
T Consensus       188 --sfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  188 --SFVTASSSWTLECYKYQ  204 (418)
T ss_pred             --EEEEecCceeEEEecHH
Confidence              89999999888888774

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.73  E-value=0.32  Score=44.16  Aligned_cols=142  Identities=9%  Similarity=0.147  Sum_probs=85.1

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      |.|+.|...-...    ..........++..-....+-+.-+  +...++-+....+.|||...+....+-.-...+.|.
T Consensus         1 g~~~~~~a~v~~~----~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~   76 (631)
T PF12234_consen    1 GRIRTWTARVDTE----SNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR   76 (631)
T ss_pred             CeeEEEEEEEcCC----CCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCcee
Confidence            5677776643111    2233333444444333444444443  444444444567999999988754433321258999


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECC---------Ccceeeee--eecc-ccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDAD---------PFVLLTSV--KVHK-KGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~--~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      ++.|.....   ++.+++.+....|.+|--.         ....++.+  ..|+ .+|.+..|.++|..++.+  ++.+.
T Consensus        77 dLDWtst~d---~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlf  151 (631)
T PF12234_consen   77 DLDWTSTPD---GQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLF  151 (631)
T ss_pred             eceeeecCC---CCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEE
Confidence            999975442   3788888999999998541         22334443  2344 588999999998665544  35788


Q ss_pred             EEEcc
Q 019326          156 MVNLV  160 (343)
Q Consensus       156 ~wd~~  160 (343)
                      ++|-.
T Consensus       152 v~dk~  156 (631)
T PF12234_consen  152 VFDKW  156 (631)
T ss_pred             EECCC
Confidence            88743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.72  E-value=0.0076  Score=33.85  Aligned_cols=34  Identities=15%  Similarity=0.036  Sum_probs=29.7

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 019326          130 KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR  164 (343)
Q Consensus       130 ~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~  164 (343)
                      ...|..++|+|...+++.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            346899999999999999999999999998 4443

>PHA02790 Kelch-like protein; Provisional

Probab=96.71  E-value=0.25  Score=44.12  Aligned_cols=180  Identities=8%  Similarity=-0.059  Sum_probs=88.2

Q ss_pred             CceEEEeeCCC-----eEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC--CeEEEEECCCc--
Q 019326           52 GTAAASGGTDD-----TIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD--GFVSIFDADPF--  120 (343)
Q Consensus        52 ~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~--  120 (343)
                      +..++.||.++     .+..||..+++...  .+... .... +++. -++     ...+.|+.+  ..+..||..+.  
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-r~~~-~~v~-~~~-----~iYviGG~~~~~sve~ydp~~n~W  343 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-RLYA-SGVP-ANN-----KLYVVGGLPNPTSVERWFHGDAAW  343 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-hhcc-eEEE-ECC-----EEEEECCcCCCCceEEEECCCCeE
Confidence            55567777543     46778887764322  22222 1122 2222 244     567777764  35778887543  


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCC---eEEEEEccCCceeEEEEcCCcceE-EEEeCCCCEEEEEeCCcEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD---CLAMVNLVRGRRSFYHKIGKEASL-IKFDGSGEKFFMVTEEKVGI  196 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~  196 (343)
                      ..+..+........ + ..-+++..+.||.++   .+..||.++++-......+.+... .+..-++...+.+  |...+
T Consensus       344 ~~~~~l~~~r~~~~-~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~  419 (480)
T PHA02790        344 VNMPSLLKPRCNPA-V-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEF  419 (480)
T ss_pred             EECCCCCCCCcccE-E-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEE
Confidence            22222221111111 1 223566777777653   467888877654333222222111 1222345544444  34677


Q ss_pred             EEcccceeEEE--ecCCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          197 HQAEDAKLLCE--LDGKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       197 ~d~~~~~~~~~--~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      ||..+.+-...  +..+..-.+++..++...+.|+.+     ..+..||..+.+
T Consensus       420 ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        420 YCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            88876543322  222111223333367777777754     346677766543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.65  E-value=0.072  Score=45.98  Aligned_cols=140  Identities=12%  Similarity=0.175  Sum_probs=95.1

Q ss_pred             CCCEEE-EEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCC--------CEEEEEeCCcEEEEEccc-ceeEEEec-
Q 019326          141 SGKLAL-TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSG--------EKFFMVTEEKVGIHQAED-AKLLCELD-  209 (343)
Q Consensus       141 ~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~d~~~-~~~~~~~~-  209 (343)
                      +..+|+ .++....++--|++.|+.+-.......+ .+.+.|..        +.++..++..|.-.|.+- +..+.... 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            344443 4555677888899999999998888888 77887743        334444777777777764 32222222 


Q ss_pred             ----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc
Q 019326          210 ----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       210 ----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                          ......|......+++++++..|-|++||.-.-.....++ +.+..|..+..+.++.         ++++.+. ..
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk---------~ilaTCk-~y  625 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGK---------HILATCK-NY  625 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCc---------EEEEeec-ce
Confidence                3334444444467899999999999999965333334455 8888999999998887         6665554 46


Q ss_pred             EEEEecc
Q 019326          286 ICVWDVR  292 (343)
Q Consensus       286 i~vwd~~  292 (343)
                      +.+-|++
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            7777765

>PHA03098 kelch-like protein; Provisional

Probab=96.54  E-value=0.31  Score=44.30  Aligned_cols=146  Identities=9%  Similarity=0.068  Sum_probs=69.9

Q ss_pred             EEEecCceEEEeeCC-----CeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------CeEE
Q 019326           47 TVAVSGTAAASGGTD-----DTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVS  113 (343)
Q Consensus        47 ~l~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~  113 (343)
                      .+...+..++.||.+     ..+..||..+++-..  .+... ... .+++.. ++     +.++.|+.+      ..+.
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~-~~~~~~-~~-----~iYv~GG~~~~~~~~~~v~  409 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYN-PCVVNV-NN-----LIYVIGGISKNDELLKTVE  409 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-Ccc-ceEEEE-CC-----EEEEECCcCCCCcccceEE
Confidence            344457777777765     347778877654322  11111 111 122222 33     566777632      4588


Q ss_pred             EEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC--------CeEEEEEccCCceeEEEEcC--CcceEEEEeC
Q 019326          114 IFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD--------DCLAMVNLVRGRRSFYHKIG--KEASLIKFDG  181 (343)
Q Consensus       114 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~  181 (343)
                      .||+.+.+  .+..+....... ++ ...++..++.|+.+        ..+..||..+++-......+  .....++. .
T Consensus       410 ~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~  486 (534)
T PHA03098        410 CFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-F  486 (534)
T ss_pred             EEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-E
Confidence            89986533  222221111111 12 22345666666643        23888898877643322221  11111222 2


Q ss_pred             CCCEEEEEe------CCcEEEEEcccce
Q 019326          182 SGEKFFMVT------EEKVGIHQAEDAK  203 (343)
Q Consensus       182 ~~~~~~~~~------~~~i~~~d~~~~~  203 (343)
                      ++..++.++      .+.+.+||..+.+
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            455555552      2356777766544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.53  E-value=0.41  Score=40.50  Aligned_cols=261  Identities=11%  Similarity=0.075  Sum_probs=119.0

Q ss_pred             Cce-EEEeeCCC--eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee
Q 019326           52 GTA-AASGGTDD--TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV  128 (343)
Q Consensus        52 ~~~-l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  128 (343)
                      |+. |+++..||  .+.+.|+.+++..+...+. ........++++.     +.++-......|+-.|+++.+....+..
T Consensus        47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~~~-----~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-GDNTFGGFLSPDD-----RALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTS-----SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCEEEEEeccCCCcceEEEEcccCEEEECccCC-CCCccceEEecCC-----CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            544 45455455  4667788888766655443 2222245566776     5665555566889999999877666666


Q ss_pred             ccccEEEEEEe--cCCCEEEEEeC----------------------CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC
Q 019326          129 HKKGVNDLAVH--HSGKLALTVGR----------------------DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE  184 (343)
Q Consensus       129 ~~~~v~~i~~~--~~~~~l~~~~~----------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
                      ....+-...|.  .++..++-.-.                      ...|...|+.+|+..........+..+.++|...
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence            66655555554  34444432211                      2345667888888777777778888999999765


Q ss_pred             EEE-EEeCC-----cEEEEEccc-ceeEEEec---CCcceEEeeec-CCCeE-EEE----eCCCcEEEEECCCCceeEEe
Q 019326          185 KFF-MVTEE-----KVGIHQAED-AKLLCELD---GKKRILCAAPG-ENGVL-FTG----GEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       185 ~~~-~~~~~-----~i~~~d~~~-~~~~~~~~---~~~~i~~~~~~-~~~~l-~~~----~~dg~i~i~d~~~~~~~~~~  248 (343)
                      .++ .|.+|     .-++|-+++ +...+.+.   ....+..=.|. ++..+ +.+    +.+..|.-+|+.+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence            544 44322     135565443 33333332   12223333344 44422 222    22445777888887653322


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC----------------CcEEEEeccCccccCCCc------ccccc
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD----------------GVICVWDVRMAIKEKPLP------LAEAK  306 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~------~~~~~  306 (343)
                      .   ..+...+..++++.         +++-=+.|                --|+++++..+.......      +....
T Consensus       281 ~---~p~~~H~~ss~Dg~---------L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~  348 (386)
T PF14583_consen  281 E---MPWCSHFMSSPDGK---------LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD  348 (386)
T ss_dssp             E---E-SEEEEEE-TTSS---------EEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred             e---CCceeeeEEcCCCC---------EEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence            2   22344455555554         44433333                246677776653211000      00000


Q ss_pred             cccceeEEEcCCCCceeccccCCC
Q 019326          307 TNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       307 ~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ....=.-..||||++.++-.+..+
T Consensus       349 ~q~~hPhp~FSPDgk~VlF~Sd~~  372 (386)
T PF14583_consen  349 RQVTHPHPSFSPDGKWVLFRSDME  372 (386)
T ss_dssp             SSTT----EE-TTSSEEEEEE-TT
T ss_pred             CccCCCCCccCCCCCEEEEECCCC
Confidence            000124577999999887665543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.14  Score=46.33  Aligned_cols=169  Identities=12%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEe----ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAI----HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      ...+..+.|+ ...|++...+|++++|++- |+.+...    ... ...|..+.+..+|       ++.-..+|.+.+-+
T Consensus        83 ~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~-~~~I~ec~~f~~G-------Vavlt~~g~v~~i~  153 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQ-MSDIVECRFFHNG-------VAVLTVSGQVILIN  153 (829)
T ss_pred             CCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccc-cCceeEEEEecCc-------eEEEecCCcEEEEc
Confidence            3478899999 8889999999999999986 4433331    222 3457777777777       55555566666554


Q ss_pred             CCCcceeeeeee---ccccEEEEEEecCC---CEEEEEe-CCCeEEEEEccC--CceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          117 ADPFVLLTSVKV---HKKGVNDLAVHHSG---KLALTVG-RDDCLAMVNLVR--GRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       117 ~~~~~~~~~~~~---~~~~v~~i~~~~~~---~~l~~~~-~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      -.......++..   ..-+-.+-...+++   ..++-.. ..+ ..++-...  .+..........+..+..+|+.++++
T Consensus       154 ~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~la  232 (829)
T KOG2280|consen  154 GVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLA  232 (829)
T ss_pred             CCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEE
Confidence            322222222221   11111222222221   1111111 000 01111111  11111111235677799999999999


Q ss_pred             EE-eCCcEEEEEcccceeEEEec--CCcceEEeeec
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPG  220 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~  220 (343)
                      .- ..|.+.+.+....+....+.  ...+...++|.
T Consensus       233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc  268 (829)
T KOG2280|consen  233 LYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC  268 (829)
T ss_pred             EEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence            88 89999999888877777766  22333355554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.23  E-value=0.29  Score=44.43  Aligned_cols=108  Identities=12%  Similarity=0.104  Sum_probs=71.6

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEe--CCCCEEEEE-eCCcEEEEEcc------
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFD--GSGEKFFMV-TEEKVGIHQAE------  200 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~-~~~~i~~~d~~------  200 (343)
                      ...-+.-+.-++..++-+....+.|||.+.+.......+  .+.|..+.|.  |+++.+++. -.+.|.+|.-.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            444455555555555555566799999998886666555  6778888874  577766665 88888887432      


Q ss_pred             ---cceeEEEec----CCcceEEeeecCCCeEEEEeCCCcEEEEECC
Q 019326          201 ---DAKLLCELD----GKKRILCAAPGENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       201 ---~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~  240 (343)
                         ....++.+.    .+.+|.+..|.+++.+++|+ ++.+.|+|-.
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence               123344443    34678888888777777776 4568888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.09  E-value=0.6  Score=37.92  Aligned_cols=202  Identities=11%  Similarity=0.124  Sum_probs=119.1

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-------Ccceeeeeee-----ccccEEEEEEecCC----------
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-------PFVLLTSVKV-----HKKGVNDLAVHHSG----------  142 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~-----~~~~v~~i~~~~~~----------  142 (343)
                      --+.|+++|.+     .+-++....+...+||..       ...++-++..     .....+.+.|+...          
T Consensus        24 N~WGia~~p~~-----~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        24 NAWGLSYRPGG-----PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             ccceeEecCCC-----CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            34679999988     566666677899999986       1122333331     12356777776432          


Q ss_pred             --CEEEEEeCCCeEEEEEccCCce---eEEEEc----CCcc-eEEEEe--CCCCEEEEE--eCCcEEEEEcccceeEEE-
Q 019326          143 --KLALTVGRDDCLAMVNLVRGRR---SFYHKI----GKEA-SLIKFD--GSGEKFFMV--TEEKVGIHQAEDAKLLCE-  207 (343)
Q Consensus       143 --~~l~~~~~d~~i~~wd~~~~~~---~~~~~~----~~~~-~~~~~~--~~~~~~~~~--~~~~i~~~d~~~~~~~~~-  207 (343)
                        ..++.+++||+|.-|...-+..   ......    ...+ ..+++.  ..+.+|+.+  ..++|.+||-.-.+.... 
T Consensus        99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118        99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence              2367888999999998543322   111111    1222 224544  346777777  899999998654332211 


Q ss_pred             -ec------CCcc--eEE------eee---c-CCCeEEEEeCCCcEEEEECCCCceeEEec-ccccccEEEEEEEecCCC
Q 019326          208 -LD------GKKR--ILC------AAP---G-ENGVLFTGGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       208 -~~------~~~~--i~~------~~~---~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~  267 (343)
                       +.      ...+  |..      +.+   . +...=+.|..-|.|-+||.. ++.++++. .+.-...+.|+..|..-.
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence             11      0011  111      111   1 11223344456789999987 88888775 234456688888775421


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                         ...+.+|+--=.||+|..||..++.
T Consensus       258 ---~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       258 ---SLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             ---CCCCCeEEeecCCceeEEecCCCCc
Confidence               2233467766679999999998774

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.05  E-value=0.82  Score=40.40  Aligned_cols=267  Identities=10%  Similarity=0.062  Sum_probs=137.2

Q ss_pred             CCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           41 HLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        41 h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ...+|..+.++ .+.+..|+.|| +..||..+++.++.-......+|..+...-.+      .+..|+.+| |++.+.+.
T Consensus       163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg------~LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG------RLWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC------cEEEEeccc-eEEEchhh
Confidence            35678888888 77888899988 67788888887766555423677777766665      788888887 66677665


Q ss_pred             cceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEEeCCcEE
Q 019326          120 FVLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMVTEEKVG  195 (343)
Q Consensus       120 ~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~  195 (343)
                      .+...-.. ...+.|..+.-..+| .+..|+.+|-.+.---+.+-.....+..   ..+..+..+.+|..-+...++.++
T Consensus       235 ~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~  313 (671)
T COG3292         235 WRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVR  313 (671)
T ss_pred             ccccccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEE
Confidence            32221111 123345444444444 5666776665433322222222222222   334556666666665555555555


Q ss_pred             EEEcccceeEEEec-CCcceE---Eeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCC
Q 019326          196 IHQAEDAKLLCELD-GKKRIL---CAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGST  270 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-~~~~i~---~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  270 (343)
                      +-+.. ......+. ..+.+.   ..+.. .+..+--...-|.+.+-+-.++..+.........-|+.+++...+     
T Consensus       314 ~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-----  387 (671)
T COG3292         314 YLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-----  387 (671)
T ss_pred             Eecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-----
Confidence            44322 22211111 111111   11110 111122222223344445555555554432333455666665533     


Q ss_pred             CCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          271 AENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                           .+..++...-+..|+.++.  ..+.........++|..+--.++++ +-.++..+
T Consensus       388 -----~lWlgs~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dns-LWIGTs~G  439 (671)
T COG3292         388 -----RLWLGSMQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGG  439 (671)
T ss_pred             -----cEEEEecccchhhhccCCc--ccccccccCCcccceeeeeecCCCC-EEEeccCC
Confidence                 4666666645666666651  1111222233455688888888888 44455554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.69  Score=37.30  Aligned_cols=156  Identities=9%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      |-...|.++.|+  .+.|++......-.|+=..+|+.++.+.-..-...-.+.+..++     ++.++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-----~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-----QFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-----EEEEEehhcceEEEEEE
Confidence            445559999999  56677666666666777777998888754323555678888777     56666667888888877


Q ss_pred             CCcceeeeee---------ec-cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-----------CCcceE
Q 019326          118 DPFVLLTSVK---------VH-KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-----------GKEASL  176 (343)
Q Consensus       118 ~~~~~~~~~~---------~~-~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~  176 (343)
                      +....+..++         .+ +.....++|.|....|+.+-+-+-+.+|.............           -..++.
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            5432221111         12 45678899999999999988888888887764432111111           134667


Q ss_pred             EEEeCCCCEEEEE--eCCcEEEEEcc
Q 019326          177 IKFDGSGEKFFMV--TEEKVGIHQAE  200 (343)
Q Consensus       177 ~~~~~~~~~~~~~--~~~~i~~~d~~  200 (343)
                      +.|++....+++-  .++.+.-.|..
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecC
Confidence            7887755544444  45555555543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.91  E-value=0.8  Score=37.82  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=78.8

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~  162 (343)
                      ...+..+..++++     ++++++..-....-||.-...-...-+.....|.+|.|.|++...+. ...|.|+.=+....
T Consensus       144 ~gs~~~~~r~~dG-----~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  144 SGSINDITRSSDG-----RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDD  217 (302)
T ss_dssp             ---EEEEEE-TTS------EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTE
T ss_pred             cceeEeEEECCCC-----cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCC
Confidence            5788889889998     67766666555667775421111112224568999999999766554 48888888772211


Q ss_pred             ceeEEE---E---cCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec----CCcceEEeeecCCCeEEEEeCCC
Q 019326          163 RRSFYH---K---IGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD----GKKRILCAAPGENGVLFTGGEDR  232 (343)
Q Consensus       163 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~dg  232 (343)
                      ......   .   ....+..+++.++++..+++..+. .+.....++..+..+    -+..+..+.|.+.+.-++-+.+|
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            111111   1   112357789999988888776664 345556666666554    34567888887555555566788


Q ss_pred             cEEEE
Q 019326          233 SITAW  237 (343)
Q Consensus       233 ~i~i~  237 (343)
                      .|--|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77655

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.19  Score=47.81  Aligned_cols=137  Identities=11%  Similarity=0.021  Sum_probs=85.5

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee-----eeeee------ccccEEEEEEecCC-CEEEEEeC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL-----TSVKV------HKKGVNDLAVHHSG-KLALTVGR  150 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~------~~~~v~~i~~~~~~-~~l~~~~~  150 (343)
                      .-++..+...++...   ..++..+.+-.|..||+++...-     .-+..      ......++.|+|.- ...+....
T Consensus       100 ~~pi~~~v~~~D~t~---s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATD---SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             cccceEEEeccCCce---EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc
Confidence            456666666677511   23333344458899998653211     11111      12345677788854 34566778


Q ss_pred             CCeEEEEEccCCceeE-EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----CCcceEEeeecCCC
Q 019326          151 DDCLAMVNLVRGRRSF-YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----GKKRILCAAPGENG  223 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----~~~~i~~~~~~~~~  223 (343)
                      |+.|++..+....... .........+++|+|.|+.++++ ..|.+.-|...- +....+.     ....|.+++|-...
T Consensus       177 dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             ccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecce
Confidence            8888888775544322 33566778999999999999999 888888886543 3223322     34779999997443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.81  E-value=0.088  Score=41.24  Aligned_cols=63  Identities=11%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCceeEEE---------------EcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLVRGRRSFYH---------------KIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      +..++.++++.+.+|.+++||+.+++.+...               .....+..+.++.+|.-+++..++..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            4456789999999999999999988754322               11233444555555555544444555555443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.81  E-value=0.72  Score=42.46  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=74.3

Q ss_pred             CCeEEEEec----CceEEEeeCCCeEEEEEcCCC-----------ee-------eeEeccCCCCCeEEEEEe--CCCCCC
Q 019326           43 SPITTVAVS----GTAAASGGTDDTIHLYDLSTS-----------SS-------LGAIHHHESSSVTSLAFY--TPQNLS   98 (343)
Q Consensus        43 ~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~-----------~~-------~~~~~~~~~~~v~~l~~~--~~~~~~   98 (343)
                      ..|+.|...    .+.|+.+..||.|.+|.+++-           +.       ...+........+.++++  ...   
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~---  177 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS---  177 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc---
Confidence            457777665    568999999999999976320           00       001222224789999998  555   


Q ss_pred             CCceEEEeeCCCeEEEEECCCc--c-eeeeeeeccccEEEEEEecCC---C---EEEEEeCCCeEEEEEc
Q 019326           99 VPRNLFSTSADGFVSIFDADPF--V-LLTSVKVHKKGVNDLAVHHSG---K---LALTVGRDDCLAMVNL  159 (343)
Q Consensus        99 ~~~~l~s~~~dg~i~iwd~~~~--~-~~~~~~~~~~~v~~i~~~~~~---~---~l~~~~~d~~i~~wd~  159 (343)
                        ++||+++....|.||-....  + ....-..+...|-+|+|.++.   .   .+++++-.|.+.+|++
T Consensus       178 --rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 --RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             --eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              68888888888888765331  1 111111255678899997753   2   7788889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=95.73  E-value=1.1  Score=37.95  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=87.7

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEccCC-cee--EEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEE
Q 019326          130 KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG-RRS--FYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLC  206 (343)
Q Consensus       130 ~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  206 (343)
                      ...+..+.+.|++.++++ +..|.+..- .+.+ +.-  ........+..+.+.++++.++++..+.+.+-....+....
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            456888999998765544 455655432 1122 211  11223356788899999998888777766543344444444


Q ss_pred             EecC-----CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          207 ELDG-----KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       207 ~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      ....     ...+..+.+.+.+.+++++.+|.+. .....++.-.....  .-......+.+..++          ..+.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~----------~~~~  318 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE----------KGFV  318 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC----------ceEE
Confidence            3322     2346777777665566677778665 44555554444331  122357777777665          3555


Q ss_pred             EcCCCcEEEEecc
Q 019326          280 ASSDGVICVWDVR  292 (343)
Q Consensus       280 ~~~dg~i~vwd~~  292 (343)
                      .+..|.|.-|+-.
T Consensus       319 ~G~~G~il~~~~~  331 (334)
T PRK13684        319 LGQRGVLLRYVGS  331 (334)
T ss_pred             ECCCceEEEecCC
Confidence            6678888877643

>PHA02790 Kelch-like protein; Provisional

Probab=95.71  E-value=1.5  Score=39.31  Aligned_cols=107  Identities=7%  Similarity=-0.067  Sum_probs=53.1

Q ss_pred             EEecCceEEEeeCC--CeEEEEEcCCCeee--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---eEEEEECCCc
Q 019326           48 VAVSGTAAASGGTD--DTIHLYDLSTSSSL--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---FVSIFDADPF  120 (343)
Q Consensus        48 l~~~~~~l~s~~~d--g~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~  120 (343)
                      +...+...+.||.+  ..+..||..+++-.  ..+... .... +++.. ++     +..+.|+.++   .+..||.++.
T Consensus       315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~-~~~~~-~g-----~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNP-AVASI-NN-----VIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-Cccc-EEEEE-CC-----EEEEecCcCCCCccEEEEeCCCC
Confidence            34446677777754  35778887665332  222211 1111 22222 34     5677777653   4677887653


Q ss_pred             c--eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE
Q 019326          121 V--LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus       121 ~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                      +  .+..+....... +++ .-+++..+.|+   .+..||.++++-...
T Consensus       387 ~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~  430 (480)
T PHA02790        387 QWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLI  430 (480)
T ss_pred             EEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEc
Confidence            2  222221111111 121 23455555553   577889887765433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.87  Score=36.75  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             CCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCC-CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-
Q 019326           43 SPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHES-SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-  120 (343)
Q Consensus        43 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  120 (343)
                      +-+..+.+++++...+..+.-++|.|+.+......+..-.. +--.++..+  +     ++...+..|.-+.+.|+.+. 
T Consensus        87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-----n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-----NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-----CEEEEeeccCcEEEEECCCCC
Confidence            34555667788999988888899999987654443332212 334444444  4     57777786777778888543 


Q ss_pred             --ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE---EcCCcceEEEEeCCCCEEEEEeCCcEE
Q 019326          121 --VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH---KIGKEASLIKFDGSGEKFFMVTEEKVG  195 (343)
Q Consensus       121 --~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~  195 (343)
                        ++...+......-..++.+  |++-..+..|+-+.+.|+.........   .....+..+..+++..+++. .+..+.
T Consensus       160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv-y~egvl  236 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV-YDEGVL  236 (370)
T ss_pred             CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE-cccceE
Confidence              2333444344444556665  667788889999999999766533332   22334555555554433333 444555


Q ss_pred             EEEccccee
Q 019326          196 IHQAEDAKL  204 (343)
Q Consensus       196 ~~d~~~~~~  204 (343)
                      +-|..+.+.
T Consensus       237 ivd~s~~ss  245 (370)
T COG5276         237 IVDVSGPSS  245 (370)
T ss_pred             EEecCCCCC
Confidence            666655443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.2  Score=47.63  Aligned_cols=142  Identities=13%  Similarity=0.013  Sum_probs=92.5

Q ss_pred             CcceEEEEeCCCCEEEEE-e--CCcEEEEEcccceeEEE-----ec-------CCcceEEeeecC--CCeEEEEeCCCcE
Q 019326          172 KEASLIKFDGSGEKFFMV-T--EEKVGIHQAEDAKLLCE-----LD-------GKKRILCAAPGE--NGVLFTGGEDRSI  234 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~--~~~i~~~d~~~~~~~~~-----~~-------~~~~i~~~~~~~--~~~l~~~~~dg~i  234 (343)
                      ..+..+...+++...++. .  +-.|..||++.......     +.       ...-..++.|.+  ....+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            445566677777766666 3  33688899886443221     11       123345566653  3356677789999


Q ss_pred             EEEECCCCc-eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeE
Q 019326          235 TAWDTNSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTC  313 (343)
Q Consensus       235 ~i~d~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~  313 (343)
                      ++..+.... .+..++  -....++++|++.+.         .++.|-..|++.-|...-..+ ..++........+|.|
T Consensus       181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGK---------Ql~iG~nnGt~vQy~P~leik-~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGK---------QLFIGRNNGTEVQYEPSLEIK-SEIPEPPVEENYRVLS  248 (1405)
T ss_pred             hhhhhhhhhhhhcccC--cccceeeEEeccccc---------eeeEecCCCeEEEeeccccee-ecccCCCcCCCcceeE
Confidence            998776433 233333  667889999999988         999999999999987764411 1122222333678999


Q ss_pred             EEcCCCCceecc
Q 019326          314 LAGSSTKSFKRP  325 (343)
Q Consensus       314 ~~~s~~~~~~~~  325 (343)
                      +.|-....|++.
T Consensus       249 v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  249 VTWLSTQEFLVV  260 (1405)
T ss_pred             EEEecceeEEEE
Confidence            999888887653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.34  E-value=0.22  Score=39.09  Aligned_cols=70  Identities=13%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             CCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEe-------c-------cCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           43 SPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAI-------H-------HHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        43 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      .++..+...+++|++-+.+|.+++||+.+++.+..-       .       .. ...|..+.++.+|     .-+++ -.
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~-~~~i~~~~lt~~G-----~PiV~-ls   85 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSS-SPNITSCSLTSNG-----VPIVT-LS   85 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCC-CCcEEEEEEcCCC-----CEEEE-Ee
Confidence            366667777999999999999999999988654322       1       23 5678888888777     33443 44


Q ss_pred             CCeEEEEECCC
Q 019326          109 DGFVSIFDADP  119 (343)
Q Consensus       109 dg~i~iwd~~~  119 (343)
                      +|..+.|+.+-
T Consensus        86 ng~~y~y~~~L   96 (219)
T PF07569_consen   86 NGDSYSYSPDL   96 (219)
T ss_pred             CCCEEEecccc
Confidence            57788888643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=1.2  Score=35.91  Aligned_cols=188  Identities=9%  Similarity=0.072  Sum_probs=110.0

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee---eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL---TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      ...+..+.++.       ++...+..+.-++|.|+.+....   ..+.. .+--.++  .-.|++..++..|.-+.+.|+
T Consensus        86 ~~l~~Dv~vse-------~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv--~vsGn~aYVadlddgfLivdv  155 (370)
T COG5276          86 RDLFADVRVSE-------EYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGV--YVSGNYAYVADLDDGFLIVDV  155 (370)
T ss_pred             hhhhheeEecc-------cEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEE--EecCCEEEEeeccCcEEEEEC
Confidence            36677778875       46777788888999999764432   22221 1223333  335788888887777889998


Q ss_pred             cCCceeEEE---EcC-CcceEEEEeCCCCEEEEE-eCCcEEEEEccccee---EEEecCCcceEEeeecCCCeEEEEeCC
Q 019326          160 VRGRRSFYH---KIG-KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL---LCELDGKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       160 ~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      .+.+.....   ..+ .....++.  .|++...+ .++.+.+.|+.+...   +........+.++..+++.-.++-...
T Consensus       156 sdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e  233 (370)
T COG5276         156 SDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE  233 (370)
T ss_pred             CCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Confidence            776543222   222 11233444  46666666 899999999886543   333334446777777766544444334


Q ss_pred             CcEEEEECCCCceeEEeccccc---ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHS---ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      | +.+-|....+....+.....   ..++.+..+..           +...+..+.-+-+-|+.++
T Consensus       234 g-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-----------~~Yvadga~gl~~idisnp  287 (370)
T COG5276         234 G-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-----------YAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             c-eEEEecCCCCCceEeeccccCCcccccceecccc-----------eeeeeccccCceeEeccCC
Confidence            3 66677766654433321112   22333344333           5666666666777777765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.24  E-value=0.62  Score=40.54  Aligned_cols=143  Identities=10%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCC--CCceEEEeeCCCeEEEEECCC-cceeeeeeecc
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLS--VPRNLFSTSADGFVSIFDADP-FVLLTSVKVHK  130 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~  130 (343)
                      .+..|+....+.--|++.|+.+..+..|  ..+ -+.|.|...++  .+..-+.|-.+..|.-.|.+- +..+.... ..
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sK  557 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SK  557 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-eh
Confidence            3445666777888899999999999888  344 67788775321  112233444455555556532 22222211 12


Q ss_pred             ccEEEEEEec----CCCEEEEEeCCCeEEEEEccCCc-eeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          131 KGVNDLAVHH----SGKLALTVGRDDCLAMVNLVRGR-RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       131 ~~v~~i~~~~----~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      ..++--.|+.    ...++++++..|-|++||--.-+ ......++..|..+..+.+|.++++.....+.+.|++
T Consensus       558 dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         558 DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            2222222222    33589999999999999953322 2334556788889999999999999888888888875

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=1  Score=34.38  Aligned_cols=102  Identities=13%  Similarity=0.042  Sum_probs=68.5

Q ss_pred             CCCEEEEEeCC--CeEEEEEccCCceeEEEEcC-CcceE--EEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceE
Q 019326          141 SGKLALTVGRD--DCLAMVNLVRGRRSFYHKIG-KEASL--IKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRIL  215 (343)
Q Consensus       141 ~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~  215 (343)
                      ++.++.+.+.-  ..|+.||+.+++........ ..+-.  +.-..+.-+.++-.++....||..+.+.+..+..++.-.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            44666666653  46999999999988777766 22222  222222223333389999999999999999988777777


Q ss_pred             EeeecCCCeEEEEeCCCcEEEEECCCCc
Q 019326          216 CAAPGENGVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       216 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      .++.. +..|+.++....++.-|.++..
T Consensus       135 gLt~d-~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         135 GLTSD-DKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             eeecC-CcceEeeCCceEEEecCHHHhh
Confidence            77774 4446666556677777766543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.12  E-value=1.8  Score=36.62  Aligned_cols=236  Identities=14%  Similarity=0.104  Sum_probs=118.2

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeee----eeccccEEEEEEecC---CCEEEEEeCC----
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSV----KVHKKGVNDLAVHHS---GKLALTVGRD----  151 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~----~~~~~~v~~i~~~~~---~~~l~~~~~d----  151 (343)
                      ..+.|+|.|++     + ++++...|.|++++.....  .+..+    .........++++|+   ..+|.+....    
T Consensus         3 ~P~~~a~~pdG-----~-l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~   76 (331)
T PF07995_consen    3 NPRSMAFLPDG-----R-LLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED   76 (331)
T ss_dssp             SEEEEEEETTS-----C-EEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred             CceEEEEeCCC-----c-EEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence            35789999998     4 4556779999999933322  12222    123457899999994   2344433331    


Q ss_pred             -----CeEEEEEccCC-------ceeE-EEEc----CCcceEEEEeCCCCEEEEEeCCc--------------EEEEEcc
Q 019326          152 -----DCLAMVNLVRG-------RRSF-YHKI----GKEASLIKFDGSGEKFFMVTEEK--------------VGIHQAE  200 (343)
Q Consensus       152 -----~~i~~wd~~~~-------~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------i~~~d~~  200 (343)
                           ..|.-|....+       +.+. ....    .+....+.|.|++.+.++..+..              |.-.+..
T Consensus        77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence                 24554555443       1111 1111    35567799999997666663222              2222211


Q ss_pred             cceeE-------------EEec-CCcceEEeeecCC-CeEEEEeC--CCcEEEEECCCC---------------------
Q 019326          201 DAKLL-------------CELD-GKKRILCAAPGEN-GVLFTGGE--DRSITAWDTNSG---------------------  242 (343)
Q Consensus       201 ~~~~~-------------~~~~-~~~~i~~~~~~~~-~~l~~~~~--dg~i~i~d~~~~---------------------  242 (343)
                       ++..             ..+. .-.....++|++. ..|+++..  ++.=.|--+..+                     
T Consensus       157 -G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~  235 (331)
T PF07995_consen  157 -GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD  235 (331)
T ss_dssp             -SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred             -CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence             1100             0000 1122346677654 55555432  222122111111                     


Q ss_pred             --------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEE
Q 019326          243 --------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCL  314 (343)
Q Consensus       243 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~  314 (343)
                              .++..+.  +...+..+.|.....-  -...+.++++.-..+.|....++.................++..+
T Consensus       236 ~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~f--p~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  236 APSCPGFVPPVFAYP--PHSAPTGIIFYRGSAF--PEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             GSS-TTS---SEEET--TT--EEEEEEE-SSSS--GGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred             ccCCCCcCccceeec--CccccCceEEECCccC--ccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence                    1333444  4467788888766541  133566788777778888888875432111111112344579999


Q ss_pred             EcCCCCceeccccCCCC
Q 019326          315 AGSSTKSFKRPQIGDSA  331 (343)
Q Consensus       315 ~~s~~~~~~~~~~~~~~  331 (343)
                      +..|||.+.+....+++
T Consensus       312 ~~~pDG~Lyv~~d~~G~  328 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGK  328 (331)
T ss_dssp             EEETTSEEEEEE-TTTT
T ss_pred             EEcCCCeEEEEECCCCe
Confidence            99999999888776664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.99  E-value=2.1  Score=36.80  Aligned_cols=139  Identities=19%  Similarity=0.148  Sum_probs=71.5

Q ss_pred             CCeEEEEec--CceEEEee-----------CCC-eEEEEEcCC--Ce--eeeEeccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           43 SPITTVAVS--GTAAASGG-----------TDD-TIHLYDLST--SS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      .....|+|+  |+++++-.           ..+ .|.+++-.+  ++  ....+... -.....+++.+++       |+
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-------ly   85 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-------VY   85 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-------EE
Confidence            345678888  55544432           223 677776432  22  22344333 3456788888776       34


Q ss_pred             EeeCCCeEEEEECCCc-----c--ee-eeeee----ccccEEEEEEecCCCEEEEEeCC-------------------Ce
Q 019326          105 STSADGFVSIFDADPF-----V--LL-TSVKV----HKKGVNDLAVHHSGKLALTVGRD-------------------DC  153 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~-----~--~~-~~~~~----~~~~v~~i~~~~~~~~l~~~~~d-------------------~~  153 (343)
                      ++......++.|....     +  .+ ..+..    +......++|.|+|.+.++.+..                   |.
T Consensus        86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            4444433334354211     1  11 11221    12347789999999877665521                   34


Q ss_pred             EEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE
Q 019326          154 LAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (343)
                      |.-++..+++......--.....++|+++++.+++-
T Consensus       166 i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       166 LFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             EEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            444554443322111112334568888887776554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.94  E-value=0.0044  Score=52.67  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCcee
Q 019326           87 TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLA-LTVGRDDCLAMVNLVRGRRS  165 (343)
Q Consensus        87 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~  165 (343)
                      ....|.+.+     .-++.++.+..+..||-.. +.+.... ..+....++|..++..+ +.+-..+.+.+||+.+....
T Consensus        38 i~~~w~~e~-----~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   38 IIHRWRPEG-----HNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             ceeeEecCC-----CceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            345677777     4588888888999998644 3333333 34456678888877544 44556789999999765422


Q ss_pred             E-EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          166 F-YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       166 ~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      . .......-.-+.|++....++.+ ..+.+.+|+..+.+...... |..+++++++...++.+.++.|..+.+-..
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQ  187 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhh
Confidence            1 22222334447889988888888 89999999998887777766 888999999988888888888877655443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.80  E-value=0.071  Score=49.22  Aligned_cols=107  Identities=17%  Similarity=0.093  Sum_probs=66.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEE-----------EeCCCCCCCCceEEEeeCCCeEEEEEC---
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLA-----------FYTPQNLSVPRNLFSTSADGFVSIFDA---  117 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~~~~~~l~s~~~dg~i~iwd~---  117 (343)
                      .-++..+-.++.|++.+.++... ..+.+| ...+..++           .+|+|     +.++++..||.++.|.+   
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDG-----tv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRALR-SLFRSH-SQRVTDMAFFAEGVLKLASLSPDG-----TVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             cceeeeccCCCceeEeeechHHH-HHHHhc-CCCcccHHHHhhchhhheeeCCCC-----cEEEEeecCCccceeeeeee
Confidence            55677778889999887765432 334445 44444433           56777     78999999998888875   


Q ss_pred             --CCcceeeeeeeccc-cEEEEEEecCC---------CEEEEEeC-CCeEEEEEccCCcee
Q 019326          118 --DPFVLLTSVKVHKK-GVNDLAVHHSG---------KLALTVGR-DDCLAMVNLVRGRRS  165 (343)
Q Consensus       118 --~~~~~~~~~~~~~~-~v~~i~~~~~~---------~~l~~~~~-d~~i~~wd~~~~~~~  165 (343)
                        ...++...++.|.+ +-.|..|+.+.         .++++++. +..+++|.....++.
T Consensus       268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence              33456777777773 33333354332         23344333 456888877666654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.74  E-value=2.9  Score=37.34  Aligned_cols=146  Identities=14%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEee--CCCeEEEEECCCcceeeeeeeccccEEEEEEecCC----CEEEEEeCCCeEEEE
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTS--ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG----KLALTVGRDDCLAMV  157 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~d~~i~~w  157 (343)
                      .++..++|....     +.+++.-  .+|.+++=|.   +.+..|    ..|..++|.|-+    ..+++.-....|.+|
T Consensus        20 HPvhGlaWTDGk-----qVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWTDGK-----QVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEecCCC-----EEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            578889998544     4555533  2333333221   233333    358889998853    356666777899999


Q ss_pred             EccC-----CceeE--EEEcCC----cceEEEEeCCCCEEEEEeCCcEE-EEEcc--cceeEEEecCCcceEEeeec-CC
Q 019326          158 NLVR-----GRRSF--YHKIGK----EASLIKFDGSGEKFFMVTEEKVG-IHQAE--DAKLLCELDGKKRILCAAPG-EN  222 (343)
Q Consensus       158 d~~~-----~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~-~~d~~--~~~~~~~~~~~~~i~~~~~~-~~  222 (343)
                      .+..     ++.+.  ......    -...+.|+|....+++-....+. +++++  +.+....++..+.|.|.+|. +|
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            8852     22222  222222    34568999999998888555554 44444  45566677789999999998 55


Q ss_pred             CeE-EEEeCCCcEEEEECCC
Q 019326          223 GVL-FTGGEDRSITAWDTNS  241 (343)
Q Consensus       223 ~~l-~~~~~dg~i~i~d~~~  241 (343)
                      +.| ++.+..=.-++||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            544 4444455677888653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.59  E-value=1  Score=39.01  Aligned_cols=83  Identities=17%  Similarity=0.146  Sum_probs=54.8

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecccc-EEEEEEecCC------------------C
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKG-VNDLAVHHSG------------------K  143 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~------------------~  143 (343)
                      ...+.++..+|.+     ++.++...-|.|.++|+.++..++.+++-.+. +.-+.....+                  -
T Consensus       307 ~R~~~~i~~sP~~-----~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  307 KREGESICLSPSG-----RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             CceEEEEEECCCC-----CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            4568899999998     77888777899999999998888888875542 1111111110                  1


Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEc
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~  170 (343)
                      +++-+-.-|.|.+|.++.+.++..+..
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            223344567777887777776554443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.51  E-value=2.8  Score=36.07  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=92.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCC-CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES-SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      ...++.++.+|.+..+|..+|+.+...... . ..+..-....++      .+..++.++.+...|..+++.........
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~-~~~~~~~~~v~~~~------~v~~~s~~g~~~al~~~tG~~~W~~~~~~  183 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVG-GSPYYASPPVVGDG------TVYVGTDDGHLYALNADTGTLKWTYETPA  183 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecC-CCeEEecCcEEcCc------EEEEecCCCeEEEEEccCCcEEEEEecCC
Confidence            455888899999999999899999988877 3 112222233333      55555578999999999888877755322


Q ss_pred             c---cEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcCCcceE-----------EEEeCCCCEEEEEeCCcE
Q 019326          131 K---GVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIGKEASL-----------IKFDGSGEKFFMVTEEKV  194 (343)
Q Consensus       131 ~---~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i  194 (343)
                      .   .+..-... ....++.+..  ++.+.-.|.++|...........+..           -...-++.......++.+
T Consensus       184 ~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~  262 (370)
T COG1520         184 PLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKL  262 (370)
T ss_pred             ccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeE
Confidence            1   11111111 2234455544  66788888888887666433222111           111113333333367778


Q ss_pred             EEEEcccceeEEEecCC
Q 019326          195 GIHQAEDAKLLCELDGK  211 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~~~  211 (343)
                      ...+..+++.+..+...
T Consensus       263 ~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         263 LCLDADTGELIWSFPAG  279 (370)
T ss_pred             EEEEcCCCceEEEEecc
Confidence            88999999998888754

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.27  E-value=2.8  Score=38.86  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=59.0

Q ss_pred             eEEeeec---CCCeEEEEeCCCcEEEEECCC-------C-------------ceeEEecccccccEEEEEEE--ecCCCC
Q 019326          214 ILCAAPG---ENGVLFTGGEDRSITAWDTNS-------G-------------KVAYCIEDAHSARVKGIVVL--TKNDGG  268 (343)
Q Consensus       214 i~~~~~~---~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~h~~~v~~~~~~--~~~~~~  268 (343)
                      |+.+...   ....|+++.+||.|.+|.+++       .             ++...+.  -....++++++  ....  
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~r--  178 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSR--  178 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcce--
Confidence            4444443   456899999999999996521       0             1222222  45588999998  4444  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCC
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  320 (343)
                             +||.++....|.||-..... .+............|.+++|-++.
T Consensus       179 -------lIAVSsNs~~VTVFaf~l~~-~r~~~~~s~~~~hNIP~VSFl~~~  222 (717)
T PF08728_consen  179 -------LIAVSSNSQEVTVFAFALVD-ERFYHVPSHQHSHNIPNVSFLDDD  222 (717)
T ss_pred             -------EEEEecCCceEEEEEEeccc-cccccccccccccCCCeeEeecCC
Confidence                   88888888888888665531 111111133455678888876543

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.26  E-value=5.4  Score=38.33  Aligned_cols=171  Identities=13%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             eEEEEECCCcceeeeeeeccc----cEEEEEEecCCC--EEEEEeC-----------CCeEEEEEccCCceeEEEEc--C
Q 019326          111 FVSIFDADPFVLLTSVKVHKK----GVNDLAVHHSGK--LALTVGR-----------DDCLAMVNLVRGRRSFYHKI--G  171 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~----~v~~i~~~~~~~--~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~--~  171 (343)
                      .|++.|..+++.+..+....+    .+....|+....  +++++..           +|.++.|++-.......+-+  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            367777766665554442222    456666665432  3333332           34466666543322222222  2


Q ss_pred             CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEEEEeCCCcEEEEE--CCCCceeE
Q 019326          172 KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFTGGEDRSITAWD--TNSGKVAY  246 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~  246 (343)
                      -+....++.|...+++++....+++||+...+++++..   -+..|+.+.+ ....++.|...-.+.++.  ....+.+.
T Consensus       934 ~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~VgD~qeSV~~~~y~~~~n~l~~ 1012 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVGDIQESVHFVRYRREDNQLIV 1012 (1205)
T ss_pred             CCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEeeccceEEEEEEecCCCeEEE
Confidence            23344677788889999999999999999888777655   2566777777 556777777665565544  43333333


Q ss_pred             EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      -..+.-...|+++.+...+          .+|.+..=|.+.+-.+.
T Consensus      1013 fadD~~pR~Vt~~~~lD~~----------tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1013 FADDPVPRHVTALELLDYD----------TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EeCCCccceeeEEEEecCC----------ceeeccccCcEEEEECC
Confidence            3333344567777666555          57777666777666654

>PRK13684 Ycf48-like protein; Provisional

Probab=94.24  E-value=3  Score=35.30  Aligned_cols=145  Identities=7%  Similarity=-0.059  Sum_probs=76.2

Q ss_pred             CCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          171 GKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      ...+..+.+.|++.+++++..|.+..-....++....+.  ....+.++.+.+++.++..+..|.+++=....+..-...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence            345677888999888777767765542112223333333  446678888875554444456676653234444433322


Q ss_pred             ccc---ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecc
Q 019326          249 EDA---HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       249 ~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      ..+   ....+.++.+.+++.          ++.++.+|.|. ...+.++.-...+.. .........+.+-++++..+.
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~----------~~~~G~~G~v~-~S~d~G~tW~~~~~~-~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGE----------IWAGGGNGTLL-VSKDGGKTWEKDPVG-EEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             cCCccccccceeeEEEcCCCC----------EEEEcCCCeEE-EeCCCCCCCeECCcC-CCCCcceEEEEEeCCCceEEE
Confidence            201   224577888887654          55566677655 344433221111110 111234666666666666555


Q ss_pred             cc
Q 019326          326 QI  327 (343)
Q Consensus       326 ~~  327 (343)
                      +.
T Consensus       320 G~  321 (334)
T PRK13684        320 GQ  321 (334)
T ss_pred             CC
Confidence            44

>PRK10115 protease 2; Provisional

Probab=94.23  E-value=4.9  Score=37.80  Aligned_cols=191  Identities=8%  Similarity=-0.009  Sum_probs=100.6

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEee-CCC----eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC------C
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTS-ADG----FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD------D  152 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------~  152 (343)
                      -.+..+.++|++     ++|+.+. .+|    .|++.|+.+++.+...-....  ..++|.++++.|+....+      .
T Consensus       127 ~~l~~~~~Spdg-----~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        127 YTLGGMAITPDN-----TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EEEeEEEECCCC-----CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCC
Confidence            457778999998     5665443 333    688999988764322211111  458999998766655432      3


Q ss_pred             eEEEEEccCC--ceeEEEEc-CCcce-EEEEeCCCCEEEEE----eCCcEEEEEcc--cceeEEEecCCcceEEeeecCC
Q 019326          153 CLAMVNLVRG--RRSFYHKI-GKEAS-LIKFDGSGEKFFMV----TEEKVGIHQAE--DAKLLCELDGKKRILCAAPGEN  222 (343)
Q Consensus       153 ~i~~wd~~~~--~~~~~~~~-~~~~~-~~~~~~~~~~~~~~----~~~~i~~~d~~--~~~~~~~~~~~~~i~~~~~~~~  222 (343)
                      .|+.+++.++  +....... ..... ....+.++++++..    .++.+.+++..  .+.....+........-..+.+
T Consensus       200 ~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (686)
T PRK10115        200 QVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ  279 (686)
T ss_pred             EEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC
Confidence            6788888877  32223332 22222 22334477766655    34568888843  3433333332222221111223


Q ss_pred             CeEEEEeC----CCcEEEEECCCCceeEEecccc-c-ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          223 GVLFTGGE----DRSITAWDTNSGKVAYCIEDAH-S-ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       223 ~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +.++.-+.    ...|...++........+. .+ . ..|..+.+..+.          ++++...+|.-+++-+.
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~~~~----------l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPRENIMLEGFTLFTDW----------LVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEE-CCCCCCEEEEEEEECCE----------EEEEEEeCCEEEEEEEc
Confidence            33333222    2234444554212223333 34 2 367888887432          67777778876666554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.00  E-value=0.31  Score=26.61  Aligned_cols=32  Identities=9%  Similarity=-0.011  Sum_probs=25.8

Q ss_pred             ccEEEEEEecCC---CEEEEEeCCCeEEEEEccCC
Q 019326          131 KGVNDLAVHHSG---KLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus       131 ~~v~~i~~~~~~---~~l~~~~~d~~i~~wd~~~~  162 (343)
                      +.|.++.|+|+.   .+|+.+-.-|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999854   47887777899999999853

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.85  E-value=0.45  Score=25.98  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ++|.++.|+|...  .+.+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~--~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPG--GNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCC--cccEEEEEccCCeEEEEEccc
Confidence            4689999998661  115788888889999999984

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.82  E-value=3.1  Score=39.06  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEE
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      .|..|.++|+|.+++..|..|...+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE
Confidence            6888999999999999988665443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=6  Score=36.56  Aligned_cols=193  Identities=13%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee----eeccccEEEE
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV----KVHKKGVNDL  136 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~i  136 (343)
                      --.|+||+.. |+.+..+.-. ...+-.+.|+.+.      .|+....+|++++|++-.. .+...    ......|..+
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~-~~~lI~mgWs~~e------eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWK-HGELIGMGWSDDE------ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhc-CCCeeeecccCCc------eEEEEeccceEEEeecchh-hhcccccccccccCceeEE
Confidence            3568888875 6666666555 4688899999876      7888999999999998542 22221    1122334445


Q ss_pred             EEecCCCEEEEEeCCCeEEEEE-ccCCceeEEEEcC---CcceEEEEeCCCCE--EEEEeC-C-cEEEEEcccce-eEEE
Q 019326          137 AVHHSGKLALTVGRDDCLAMVN-LVRGRRSFYHKIG---KEASLIKFDGSGEK--FFMVTE-E-KVGIHQAEDAK-LLCE  207 (343)
Q Consensus       137 ~~~~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~-~-~i~~~d~~~~~-~~~~  207 (343)
                      .+..+|-.+++  .+|.+.+-+ ......-.....+   -+..+-...+++..  +...-+ - ...++...... ....
T Consensus       134 ~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  134 RFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA  211 (829)
T ss_pred             EEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence            55545533333  344444332 2221111111101   11122222222111  111111 0 00111111111 1111


Q ss_pred             ec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEec
Q 019326          208 LD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       208 ~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      +. ....+..+..+ +.++|+-=...|.|.+-+....+.+.++...-..+...++|..+
T Consensus       212 ~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  212 LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            11 33667777777 45688888889999998888777666665222233334555444

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=2.6  Score=36.40  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=65.1

Q ss_pred             CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC-c
Q 019326          171 GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG-K  243 (343)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~  243 (343)
                      .+++.++.|++|.+.+++- .+..|.+++....+......     ....|...+|.+..-++.-+..| +.+|-.... +
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekr  144 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKR  144 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhh
Confidence            4689999999999999999 99999999875433332222     33458888998777666666555 666655432 3


Q ss_pred             eeEEecccccccEEEEEEEecCC
Q 019326          244 VAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       244 ~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      .++..+ .|...|+-..|.++..
T Consensus       145 slRlVk-s~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  145 SLRLVK-SHNLNVNWYMYCPETA  166 (657)
T ss_pred             hhhhhh-hcccCccEEEEccccc
Confidence            344444 6777777777777765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.33  E-value=4.6  Score=34.45  Aligned_cols=226  Identities=9%  Similarity=0.027  Sum_probs=103.1

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-----------------------
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-----------------------  108 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-----------------------  108 (343)
                      .+.++-......|+-.|+++.+....+... ...+-...|..+..    ...++|..                       
T Consensus        92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d----~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p  166 (386)
T PF14583_consen   92 DRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSD----CTKLVGIEISREDWKPLTKWKGFREFYEARP  166 (386)
T ss_dssp             SSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TT----SSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred             CCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCC----ccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence            555554555567888899998766666555 55555566643321    22333321                       


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC----e-EEEEEccCCc----eeEEEEcCCcceEEEE
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD----C-LAMVNLVRGR----RSFYHKIGKEASLIKF  179 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~-i~~wd~~~~~----~~~~~~~~~~~~~~~~  179 (343)
                      ...|.-.|+.+++....+. ....+..+.|+|....+++-+..|    . -+||-+++..    ++........+..=-|
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw  245 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW  245 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence            1234555667766544444 455778889999765555544322    1 3677665432    1222222233444568


Q ss_pred             eCCCCEEEEE--e----CCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEe-CC----------------CcEEE
Q 019326          180 DGSGEKFFMV--T----EEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGG-ED----------------RSITA  236 (343)
Q Consensus       180 ~~~~~~~~~~--~----~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~-~d----------------g~i~i  236 (343)
                      .|+|..+.--  .    +..|.-+|+.+++.......+ ....+..+.++.|++|. .|                -.|++
T Consensus       246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~  324 (386)
T PF14583_consen  246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL  324 (386)
T ss_dssp             -TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred             cCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence            8998877654  1    224566777776554322222 22222333444444443 22                14667


Q ss_pred             EECCCCceeEEec--------ccccc-cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          237 WDTNSGKVAYCIE--------DAHSA-RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       237 ~d~~~~~~~~~~~--------~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +++..+....-..        .++.. .=....|+|+++        ..|.++...|...||=++
T Consensus       325 ~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk--------~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  325 FDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGK--------WVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             EETTTTEEEEEEE-------BTTBSSTT----EE-TTSS--------EEEEEE-TTSS-EEEEEE
T ss_pred             eccccCceeeeeeccCcceeecCCCccCCCCCccCCCCC--------EEEEECCCCCCccEEEEe
Confidence            8887665432111        01111 123456777765        256677778887777554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.20  E-value=0.0095  Score=50.76  Aligned_cols=143  Identities=13%  Similarity=0.111  Sum_probs=98.0

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEE-Ee
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLC-EL  208 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~-~~  208 (343)
                      ......|.|.+.-++.++.+..+..||- .++.......+.....++|+.++..+++.  ..+.+.+||+.+....+ .+
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3445678888777888888888999984 44544555556666778888888877666  78999999987633211 11


Q ss_pred             cCCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          209 DGKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       209 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      .....-.-+.|+++ ..++.|...|.+.+++..+.+.+...- .|..+++++++.+.+          +.+.++.|..+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd----------~vil~dcd~~L  182 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLED----------YVILCDCDNTL  182 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccc----------eeeecCcHHHH
Confidence            11111112556543 467778889999999988776655554 489999999999887          56666665543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.18  E-value=0.17  Score=46.84  Aligned_cols=98  Identities=9%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             cCCCCCeEEEEec-C--ceEEEeeCCCeEEEEEcCC--CeeeeEe-----ccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           39 PAHLSPITTVAVS-G--TAAASGGTDDTIHLYDLST--SSSLGAI-----HHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        39 ~~h~~~v~~l~~~-~--~~l~s~~~dg~i~iwd~~~--~~~~~~~-----~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      +|..+.|-.++|. .  ..++  -.-|.+.||+++-  |+....+     ... ...+.-+.|.|---  ..-++..+..
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-gs~~~~V~wcp~~~--~~~~ic~~~~  203 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY-GSDPQLVSWCPIAV--NKVYICYGLK  203 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC-CCCcceeeeccccc--ccceeeeccC
Confidence            4556667777775 1  1111  2336788898763  3322222     222 34445555554320  1146777777


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCC
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG  142 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  142 (343)
                      ++++++.+..+.. ...+++|...+..++|-..|
T Consensus       204 ~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  204 GGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             CCceeEeeechHH-HHHHHhcCCCcccHHHHhhc
Confidence            8898888776533 25556688888877776554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.01  E-value=1.4  Score=42.95  Aligned_cols=161  Identities=11%  Similarity=0.090  Sum_probs=81.5

Q ss_pred             eeCCCeEEEEECCCcceeeeeeeccccEEEEEE--------ecCCCEEEEEeCCCeEEEEEccCCc----ee-----EEE
Q 019326          106 TSADGFVSIFDADPFVLLTSVKVHKKGVNDLAV--------HHSGKLALTVGRDDCLAMVNLVRGR----RS-----FYH  168 (343)
Q Consensus       106 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--------~~~~~~l~~~~~d~~i~~wd~~~~~----~~-----~~~  168 (343)
                      .+.|+.+.+|+.+++.....+.+....|..+..        -|.=++++..+.--.|.++-+.-.+    ..     ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            356789999999987777777766665655543        2222455555555556665443221    10     111


Q ss_pred             -EcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          169 -KIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       169 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                       ..+..+.++....+|+.|++|.|+.+  |.+.-...-.-+.  .....++.       +.+.-..+.      +. +..
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~l--yEl~Yq~~~gWf~--~rc~Kicl-------t~s~ls~lv------Ps-~~~  236 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNL--YELVYQAEDGWFG--SRCRKICL-------TKSVLSSLV------PS-LLS  236 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCE--EEEEEeccCchhh--cccccccC-------chhHHHHhh------hh-hhc
Confidence             11344566666666777766655533  3221000000000  00000000       000000000      00 111


Q ss_pred             ecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +...+..+|..+.+.....         .+.+-+..|+|.+|++..
T Consensus       237 ~~~~~~dpI~qi~ID~SR~---------IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  237 VPGSSKDPIRQITIDNSRN---------ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCCCcceeeEeccccc---------eeeeeccCceEEEEEccC
Confidence            1125677888888887776         888888888999998876

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.92  E-value=8.4  Score=36.32  Aligned_cols=76  Identities=11%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---------ccee---eeee--------eccccEEEEEEecC-
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---------FVLL---TSVK--------VHKKGVNDLAVHHS-  141 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~---~~~~--------~~~~~v~~i~~~~~-  141 (343)
                      .-.|..+.++|++     .+++..|..|.+.+.=.+.         ++..   +++.        .+...|..+.|+|. 
T Consensus        84 ~f~v~~i~~n~~g-----~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   84 LFEVHQISLNPTG-----SLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             ceeEEEEEECCCC-----CEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence            3568889999999     6788777766444332221         1111   1111        23347899999996 


Q ss_pred             --CCEEEEEeCCCeEEEEEccCCc
Q 019326          142 --GKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus       142 --~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                        +.+|++-..|+++++||+...+
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCCCC
Confidence              4899999999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=92.84  E-value=5.1  Score=39.12  Aligned_cols=141  Identities=11%  Similarity=0.054  Sum_probs=79.6

Q ss_pred             CCeEEEEEeecCCCCCCCCcce---eeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCC-eeeeEeccCCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTL---TLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTS-SSLGAIHHHESS   84 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~   84 (343)
                      .|.+.|||+-..-+.+  +++.   +.+.+.. +..+++|..++=-..+|+++.. ..|.+|+++.. ..+..-. - .-
T Consensus      1064 RGr~hi~diIeVVPep--gkP~t~~KlKel~~-eE~KGtVsavceV~G~l~~~~G-qKI~v~~l~r~~~ligVaF-i-D~ 1137 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEP--GKPFTKNKLKELYI-EEQKGTVSAVCEVRGHLLSSQG-QKIIVRKLDRDSELIGVAF-I-DL 1137 (1366)
T ss_pred             cccEEEEEEEEecCCC--CCCcccceeeeeeh-hhcccceEEEEEeccEEEEccC-cEEEEEEeccCCcceeeEE-e-cc
Confidence            6899999986532222  3333   3333332 3467889888776555665543 56999999543 3222111 1 12


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeee-e-ccccEEEEEEecCCC--EEEEEeCCCeEEEEEc
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVK-V-HKKGVNDLAVHHSGK--LALTVGRDDCLAMVNL  159 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~-~~~~v~~i~~~~~~~--~l~~~~~d~~i~~wd~  159 (343)
                      ++......--.     ++|+.|..-..|.+...+.. ..+..+. . ..-.+.++.|.-+|.  .++++..++.|.++-.
T Consensus      1138 ~~yv~s~~~vk-----nlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1138 PLYVHSMKVVK-----NLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             ceeEEehhhhh-----hheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            22222222222     57777777777776665431 1222221 1 123688888887774  5778888999888865


Q ss_pred             c
Q 019326          160 V  160 (343)
Q Consensus       160 ~  160 (343)
                      .
T Consensus      1213 ~ 1213 (1366)
T KOG1896|consen 1213 A 1213 (1366)
T ss_pred             C
Confidence            4

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.84  E-value=1.5  Score=28.61  Aligned_cols=44  Identities=2%  Similarity=-0.157  Sum_probs=31.4

Q ss_pred             eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCC
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEE  192 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (343)
                      ..+|.+.-||..+++.......-...+.+++++++..++++.-.
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~   77 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG   77 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence            34678888999888765555555678899999999999988433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.71  E-value=0.88  Score=24.49  Aligned_cols=40  Identities=5%  Similarity=0.060  Sum_probs=26.9

Q ss_pred             cCCCEEEEEe-CCCeEEEEEccCCceeEEEEcCCcceEEEE
Q 019326          140 HSGKLALTVG-RDDCLAMVNLVRGRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       140 ~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  179 (343)
                      |+++.|+++. .++.|.++|..+++.............+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4566555544 578899999988877776666555555544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=92.67  E-value=7.5  Score=35.14  Aligned_cols=245  Identities=15%  Similarity=0.145  Sum_probs=125.2

Q ss_pred             CceEEEeeCCCeEEEEEcCCCe---eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECCCcceeeee
Q 019326           52 GTAAASGGTDDTIHLYDLSTSS---SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDADPFVLLTSV  126 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  126 (343)
                      +..++.+..+|.+....+....   .+..+..- ....+++.+..++    +.+|+.|+.-|  .+.-|.....+.+..+
T Consensus       222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~-~~~~s~l~~l~~g----~d~lf~gs~~gds~l~~~~~~~l~~~~~~  296 (504)
T PF10433_consen  222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTL-CSIASSLTYLKNG----GDYLFVGSEFGDSQLLQISLSNLEVLDSL  296 (504)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE---S-ESEEEEESTT------EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCc-CChhheEEEEcCC----CEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence            6778889999999888776543   23333321 2455677776654    24788888754  5555554444555555


Q ss_pred             eeccccEEEEEEecC---C-C------EEEEEe---CCCeEEEEEccCCce-----eEEEEcCCcceEEEEeC----CCC
Q 019326          127 KVHKKGVNDLAVHHS---G-K------LALTVG---RDDCLAMVNLVRGRR-----SFYHKIGKEASLIKFDG----SGE  184 (343)
Q Consensus       127 ~~~~~~v~~i~~~~~---~-~------~l~~~~---~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~----~~~  184 (343)
                      . .-++|.++++.+.   + .      .|++++   .+|.+++..  .|-.     ......+. +..+-.-+    +..
T Consensus       297 ~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~  372 (504)
T PF10433_consen  297 P-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHS  372 (504)
T ss_dssp             -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBS
T ss_pred             c-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCce
Confidence            5 4568888888532   1 2      555554   367888764  3322     22223333 33322222    256


Q ss_pred             EEEEEeCCcEEEEEcc---cceeEEEe-----cC-CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccccccc
Q 019326          185 KFFMVTEEKVGIHQAE---DAKLLCEL-----DG-KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR  255 (343)
Q Consensus       185 ~~~~~~~~~i~~~d~~---~~~~~~~~-----~~-~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~  255 (343)
                      +++.+....-+++.+.   ....+..+     .. ...+.+-.+ .++.++=... ..|++.+...++....+.......
T Consensus       373 ~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~-~~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~  450 (504)
T PF10433_consen  373 YLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV-GDGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSI  450 (504)
T ss_dssp             EEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEE-TTTEEEEEES-SEEEEEESSSTSEEEEEE-TTS--
T ss_pred             EEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc-CCCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCe
Confidence            7777755566666663   23333222     11 122333333 3455554444 348899988888777765334555


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCc-ccccccccceeEEEcCC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP-LAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~  318 (343)
                      |.+.+....           +++.+-.++.+..+.++......... .........|.|+..+|
T Consensus       451 I~~a~~~~~-----------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  451 IVAASINDP-----------QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             -SEEEESSS-----------EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEEECCC-----------EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            655555433           67777778899999987653211100 11112456789988876

...

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.48  E-value=4  Score=31.56  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             eEEEeeCCCeEEEEECC--CcceeeeeeeccccEEEEEEecCCCEEEEEeCCC------eEEEE---Ecc--CCce----
Q 019326          102 NLFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD------CLAMV---NLV--RGRR----  164 (343)
Q Consensus       102 ~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~------~i~~w---d~~--~~~~----  164 (343)
                      .|+.+...+.|.+|++.  ..+.+.++.. -+.|..+.++..|+++++--.+.      .+++|   +..  ..++    
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            45555677789999987  3445566653 37899999999999999875432      45554   221  0111    


Q ss_pred             -------------------eEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEccccee
Q 019326          165 -------------------SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKL  204 (343)
Q Consensus       165 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  204 (343)
                                         +...+...++.+++..|-.-.++++.++.+.+|.+.....
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI  167 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence                               1122233566778888877778888888899998765443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.22  E-value=5.3  Score=35.11  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=24.0

Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ..|.+++..+...         .+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~---------~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRR---------LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTT---------EEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcC---------EEEEEeCCCcEEEEEEeC
Confidence            3488888887776         999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.19  E-value=4.1  Score=35.42  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=63.4

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCC-----------
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNL-----------   97 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-----------   97 (343)
                      +......+......+.+++.+  +.+.|+...-|.|.++|+.++..++.+++..+..+.=+........           
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence            344555666666778888888  7777777778999999999998888887763333322222222100           


Q ss_pred             C--CCceEEEeeCCCeEEEEECCCcceeeeeee
Q 019326           98 S--VPRNLFSTSADGFVSIFDADPFVLLTSVKV  128 (343)
Q Consensus        98 ~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  128 (343)
                      .  .--+++-+-.-|.|-||.++.+..+..+..
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            0  001334456678899999988877766653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.08  E-value=0.87  Score=24.51  Aligned_cols=29  Identities=14%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             CCCCEEEEE--eCCcEEEEEcccceeEEEec
Q 019326          181 GSGEKFFMV--TEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       181 ~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~  209 (343)
                      |++++++++  .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            455655555  56777777777776666655

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.75  E-value=7.3  Score=32.94  Aligned_cols=230  Identities=15%  Similarity=0.103  Sum_probs=112.6

Q ss_pred             eEEEEec-CceEEEeeCCCeEEEEEcCCCee---eeEe---ccCCCCCeEEEEEeCCCCCCCCceEEEeeC-C-------
Q 019326           45 ITTVAVS-GTAAASGGTDDTIHLYDLSTSSS---LGAI---HHHESSSVTSLAFYTPQNLSVPRNLFSTSA-D-------  109 (343)
Q Consensus        45 v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~~~---~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-d-------  109 (343)
                      .++|+|. ...++++...|.|++++ ..+..   +..+   ..........++++|+-  ....+|..... .       
T Consensus         4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f--~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDF--ASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTC--CCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceecccc--CCCCEEEEEEEcccCCCCCc
Confidence            5678887 34555567799999999 33433   2222   11225678999999951  00123333332 1       


Q ss_pred             -CeEEEEECCCc-------cee-eeeee---ccccEEEEEEecCCCEEEEEeCCCe-------------EEEEEccCCce
Q 019326          110 -GFVSIFDADPF-------VLL-TSVKV---HKKGVNDLAVHHSGKLALTVGRDDC-------------LAMVNLVRGRR  164 (343)
Q Consensus       110 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-------------i~~wd~~~~~~  164 (343)
                       ..|.-|.....       +.+ ..+..   ....-..|+|.|+|.+.++.+..+.             |.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             23444444322       111 11121   1234567999999977777665332             2222221 110


Q ss_pred             -------------eEEEEcC-CcceEEEEeCC-CCEEEEE--eCCcEEEEEcccc-------------------------
Q 019326          165 -------------SFYHKIG-KEASLIKFDGS-GEKFFMV--TEEKVGIHQAEDA-------------------------  202 (343)
Q Consensus       165 -------------~~~~~~~-~~~~~~~~~~~-~~~~~~~--~~~~i~~~d~~~~-------------------------  202 (343)
                                   ....... .....++|+|. +.++++-  .+..=.+.-+..+                         
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                         0011111 22456899998 5444433  2222223222221                         


Q ss_pred             ----eeEEEecCCcceEEeeec--------CCCeEEEEeCCCcEEEEECCCCceeE---EecccccccEEEEEEEecCCC
Q 019326          203 ----KLLCELDGKKRILCAAPG--------ENGVLFTGGEDRSITAWDTNSGKVAY---CIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       203 ----~~~~~~~~~~~i~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~  267 (343)
                          .+...+.+...+..+.+.        .+.++++.-..+.|....+..+..+.   .+.......+..+++.|++. 
T Consensus       240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-  318 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-  318 (331)
T ss_dssp             TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-
T ss_pred             CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-
Confidence                122233344556666654        23456655556788888876553332   22223455789999998876 


Q ss_pred             CCCCCCCeEEEEEcCCCcEE
Q 019326          268 GSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~  287 (343)
                              ++++-+.+|.|.
T Consensus       319 --------Lyv~~d~~G~iy  330 (331)
T PF07995_consen  319 --------LYVSDDSDGKIY  330 (331)
T ss_dssp             --------EEEEE-TTTTEE
T ss_pred             --------EEEEECCCCeEe
Confidence                    777777788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.65  E-value=8.4  Score=33.46  Aligned_cols=145  Identities=10%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCc-eeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccce-----eEE
Q 019326          133 VNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK-----LLC  206 (343)
Q Consensus       133 v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~  206 (343)
                      ...+...+++.+++.+..-..++-||--... ..........+..+.+.+++..++++..|.+.. ....++     ...
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~  319 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE  319 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence            3445667777766665544333344432111 222333345678889999999988886666544 333332     223


Q ss_pred             EecC---CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec--ccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          207 ELDG---KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE--DAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       207 ~~~~---~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      ....   ...+..+.+.+++.+++++..|.+..-. ..|+.-....  ..-......+.|.+++.          ....+
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~----------g~~~G  388 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK----------GFVLG  388 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc----------eEEEe
Confidence            3332   2358888888777777777888776653 4454433332  12345678888877653          55666


Q ss_pred             CCCcEEEE
Q 019326          282 SDGVICVW  289 (343)
Q Consensus       282 ~dg~i~vw  289 (343)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            78877654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.52  E-value=11  Score=34.71  Aligned_cols=160  Identities=15%  Similarity=0.168  Sum_probs=89.2

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeeeee-ccc------cEEEEEEecCCCEEEEEeC-C-
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSVKV-HKK------GVNDLAVHHSGKLALTVGR-D-  151 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~-~~~------~v~~i~~~~~~~~l~~~~~-d-  151 (343)
                      ...|-.+.|.+++     +.+++.-.+|.|.+||.....  .+..+.. +..      -|..........++++.+. + 
T Consensus       129 ~~kvv~Ik~~~~~-----~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~  203 (670)
T PF10395_consen  129 DDKVVGIKFSSDG-----KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSN  203 (670)
T ss_pred             ccceEEEEEecCC-----CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCC
Confidence            4789999999887     799999999999999993222  1112221 111      1221111112244544444 2 


Q ss_pred             --CeEEEEEc--cCCceeEEE---EcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecCC-------cceEEe
Q 019326          152 --DCLAMVNL--VRGRRSFYH---KIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGK-------KRILCA  217 (343)
Q Consensus       152 --~~i~~wd~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~i~~~  217 (343)
                        -..+++.+  .........   ..........|.-....+..-.++.+.+|++.+.+..+++.-+       ..+.++
T Consensus       204 ~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl  283 (670)
T PF10395_consen  204 SKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL  283 (670)
T ss_pred             CcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence              23567776  222211111   1112222233333333344448889999999998887777622       234455


Q ss_pred             eec-CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          218 APG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       218 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      ... +++.|++  .++.|++.|+.-...+.++.
T Consensus       284 ~~~s~nRvLLs--~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  284 KPPSPNRVLLS--VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             ecCCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence            443 4555554  36789999997666555554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.41  E-value=8.1  Score=38.00  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          210 GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       210 ~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      +..++.+..+....-++.+...+.+.+|+.........+.      +.......++.         .++++-.||.+.+|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---------~~v~~h~Dgs~~fW  261 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYL------PNGQLESRDGS---------HFVSYHTDGSYAFW  261 (993)
T ss_pred             cccccceeeeecCCCcceeeeeeeeeehhcccccchhhcc------cccccCccCCc---------eEEEEEecCCEEee
Confidence            3444555555433444455556666677655443333332      11111144444         99999999999999


Q ss_pred             eccCc
Q 019326          290 DVRMA  294 (343)
Q Consensus       290 d~~~~  294 (343)
                      |...+
T Consensus       262 d~s~g  266 (993)
T KOG1983|consen  262 DVSSG  266 (993)
T ss_pred             ecCCC
Confidence            99986

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.36  E-value=7.4  Score=38.41  Aligned_cols=137  Identities=14%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             EEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----C------ceEEEeeCCCeEEEEEcCCCe
Q 019326            4 IAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----G------TAAASGGTDDTIHLYDLSTSS   73 (343)
Q Consensus         4 ~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~------~~l~s~~~dg~i~iwd~~~~~   73 (343)
                      +-.+.|+.+.+|+.+..            .....+.+-...|..+..-    |      ++++.-+.--.|.++-+.-.+
T Consensus        93 aWiTiDn~L~lWny~~~------------~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESD------------NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eEEEeCCeEEEEEcCCC------------CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            44577999999999872            2233344445566666543    1      233333333446565432211


Q ss_pred             e-------e--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC----CCc---c-e--------------
Q 019326           74 S-------L--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA----DPF---V-L--------------  122 (343)
Q Consensus        74 ~-------~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~----~~~---~-~--------------  122 (343)
                      .       .  ..+... ...|+|+....+|      .++-++.||.  +|.+    ..+   + +              
T Consensus       161 ~~~~~~~f~~~~~i~~d-g~~V~~I~~t~nG------RIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISVD-GVSVNCITYTENG------RIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             ccCcccccccceeeecC-CceEEEEEeccCC------cEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            1       1  122233 4678899977777      5666667774  4443    110   0 0              


Q ss_pred             --eeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326          123 --LTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus       123 --~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                        +..+. .+..+|..|+.......+.+-+..++|.+||+..
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence              11222 4567999999998889999999999999999976

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.05  E-value=9.2  Score=32.77  Aligned_cols=186  Identities=20%  Similarity=0.256  Sum_probs=108.1

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec----CCCE--EEEEe-CC---CeEEEEEccCCc-eeEEEE
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH----SGKL--ALTVG-RD---DCLAMVNLVRGR-RSFYHK  169 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~----~~~~--l~~~~-~d---~~i~~wd~~~~~-~~~~~~  169 (343)
                      .+++....++-+.+||++. +.++.+.  .+.++.+..-.    +++.  |+.++ .+   .+|++|.+.... .+....
T Consensus        69 SlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             ceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            5788888889999999976 4555553  23444444322    3322  33333 32   579999776321 222211


Q ss_pred             --------cCCcceEEEE--eC-CCCEEEEE--eCCcEEEEEcc---c----ceeEEEecCCcceEEeeecC-CCeEEEE
Q 019326          170 --------IGKEASLIKF--DG-SGEKFFMV--TEEKVGIHQAE---D----AKLLCELDGKKRILCAAPGE-NGVLFTG  228 (343)
Q Consensus       170 --------~~~~~~~~~~--~~-~~~~~~~~--~~~~i~~~d~~---~----~~~~~~~~~~~~i~~~~~~~-~~~l~~~  228 (343)
                              .-..+..+|+  ++ ++.+.+..  .+|.+..|.+.   .    ++.++++.....+..+...+ ...|+.|
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg  225 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG  225 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence                    1123556665  33 45544444  67888888775   2    25678888778888888874 4699999


Q ss_pred             eCCCcEEEEECCCC-----ceeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          229 GEDRSITAWDTNSG-----KVAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       229 ~~dg~i~i~d~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      -++.-|.-|+....     +.+..... .....|..|++.....     ..|++|+|.=.+++..||+.+..
T Consensus       226 EE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-----g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  226 EEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD-----GKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             ETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC-----C-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC-----CCeEEEEEcCCCCeEEEEecCCC
Confidence            99988888887522     22323321 2456889999886542     23456777777889999998864

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.95  E-value=6.2  Score=30.59  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             EEEecC-ceEEEeeCCCeEEEEEcC--CCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC------eEEEE--
Q 019326           47 TVAVSG-TAAASGGTDDTIHLYDLS--TSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG------FVSIF--  115 (343)
Q Consensus        47 ~l~~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg------~i~iw--  115 (343)
                      .++-.| +.|+.+...+.|.+|++.  ..+....|..-  +.|..+.++..|     ++|++--.+.      .+++|  
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~G-----DYlvTlE~k~~~~~~~fvR~Y~N   94 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAG-----DYLVTLEEKNKRSPVDFVRAYFN   94 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEecccc-----ceEEEEEeecCCccceEEEEEEE
Confidence            334444 666665667889999988  34566677665  889999999999     7898875532      45665  


Q ss_pred             -ECC--Ccceee-eeeec---------------------cccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 019326          116 -DAD--PFVLLT-SVKVH---------------------KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus       116 -d~~--~~~~~~-~~~~~---------------------~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~  162 (343)
                       +..  ..+++. .+-+|                     ..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus        95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence             211  111111 11121                     23566777777543444444 457888887644

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.89  E-value=8.8  Score=32.29  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=54.4

Q ss_pred             EEEecCceEEEeeCC-----CeEEEEEcCCCeee---eEeccCCCCCe--EEEEEeCCCCCCCCceEEEeeC-----CCe
Q 019326           47 TVAVSGTAAASGGTD-----DTIHLYDLSTSSSL---GAIHHHESSSV--TSLAFYTPQNLSVPRNLFSTSA-----DGF  111 (343)
Q Consensus        47 ~l~~~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~~v--~~l~~~~~~~~~~~~~l~s~~~-----dg~  111 (343)
                      +++..+.+++.|+.+     ..+..+|+.+.+..   ..+..- ..+.  .+++.. ++     +..+.|+.     ...
T Consensus        68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-p~~~~~~~~~~~-~~-----~iYv~GG~~~~~~~~~  140 (323)
T TIGR03548        68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-PFTFENGSACYK-DG-----TLYVGGGNRNGKPSNK  140 (323)
T ss_pred             EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC-CcCccCceEEEE-CC-----EEEEEeCcCCCccCce
Confidence            344446666777754     34667777665431   122111 1111  122333 33     46666664     246


Q ss_pred             EEEEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCCC----eEEEEEccCCce
Q 019326          112 VSIFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRDD----CLAMVNLVRGRR  164 (343)
Q Consensus       112 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~i~~wd~~~~~~  164 (343)
                      +..||+.+.+  .+..+... ......+...++++.+.|+.++    .+..||.++.+-
T Consensus       141 v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       141 SYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             EEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            8888876533  22222211 1112222334566777777653    256788887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>smart00564 PQQ beta-propeller repeat

Probab=90.89  E-value=0.75  Score=23.22  Aligned_cols=27  Identities=22%  Similarity=0.625  Sum_probs=21.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      ++.+++++.+|.+..+|..+|+.+.++
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            446778888899999999888877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.83  E-value=8.2  Score=34.19  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .|..+..++.|..++..+.+|.+.++=
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEc
Confidence            567788899999999999999776654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.58  E-value=11  Score=32.84  Aligned_cols=151  Identities=6%  Similarity=-0.004  Sum_probs=87.0

Q ss_pred             eEEEEec-CceEEEeeCCCeEEEEEcCCC--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           45 ITTVAVS-GTAAASGGTDDTIHLYDLSTS--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        45 v~~l~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      -+.+-|+ .+..+-+-..|.+.=|-+...  ...-.+.-...++|.++.|+++.     +.++.--.+++|.+++....+
T Consensus        25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-----kilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-----KILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-----ceEEEEecCceEEEEecCCCc
Confidence            3445566 333333344455666655432  22334433336899999999998     789998999999999984333


Q ss_pred             ee----eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc--eeEEEEcCCcceEEEEeCCCCEEEEE---eCC
Q 019326          122 LL----TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR--RSFYHKIGKEASLIKFDGSGEKFFMV---TEE  192 (343)
Q Consensus       122 ~~----~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  192 (343)
                      ..    .+.+..+..|....|..+ ..++.....| +-+|.....+  ......+...+.-..|.++.+.++.+   ..+
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n  177 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN  177 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence            22    223333456888999876 4455555444 4555443222  22222334556667777877766555   234


Q ss_pred             cEEEEEcccc
Q 019326          193 KVGIHQAEDA  202 (343)
Q Consensus       193 ~i~~~d~~~~  202 (343)
                      .+.-+.++++
T Consensus       178 ~lnpf~~~~~  187 (657)
T KOG2377|consen  178 VLNPFHFRAG  187 (657)
T ss_pred             ccccEEEeec
Confidence            4444444443

>PRK10115 protease 2; Provisional

Probab=90.55  E-value=16  Score=34.59  Aligned_cols=187  Identities=6%  Similarity=-0.053  Sum_probs=93.8

Q ss_pred             eEEEEec--CceEEEeeC-----CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-C-----Ce
Q 019326           45 ITTVAVS--GTAAASGGT-----DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-D-----GF  111 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-d-----g~  111 (343)
                      +..+.++  +++|+.+..     .-.|++.|+.+++.+......  .. ..++|.+++     +.|+.... +     ..
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~-----~~~~y~~~~~~~~~~~~  200 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDS-----WTFYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCC-----CEEEEEEecCCCCCCCE
Confidence            4455666  666665422     235888899888644322222  12 469999988     44444333 2     36


Q ss_pred             EEEEECCCc--ceeeeeeeccccEE-EEEEecCCCEEEEEeC---CCeEEEEEcc--CCceeEEEEcCCcceEEEEeCCC
Q 019326          112 VSIFDADPF--VLLTSVKVHKKGVN-DLAVHHSGKLALTVGR---DDCLAMVNLV--RGRRSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       112 i~iwd~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~---d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
                      |+.+++.++  +-...+........ .+..+.++++++..+.   ++.+.+++..  .+..............-..+..+
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQH  280 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCC
Confidence            788888776  33333443233233 2333447776655444   3568888843  33322233333332222223333


Q ss_pred             CEEEEEe--CCc--EEEEEccc-ceeEEEecC--CcceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          184 EKFFMVT--EEK--VGIHQAED-AKLLCELDG--KKRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       184 ~~~~~~~--~~~--i~~~d~~~-~~~~~~~~~--~~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      .+++...  ...  +...++.+ ++....+.+  ...+..+.+..+.++++...+|.-+++-+
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence            3333332  123  33334432 222223333  23677777766667777777777555543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.30  E-value=3.6  Score=37.57  Aligned_cols=72  Identities=21%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             cCceEEEeeCCCeEEEEEcCC----CeeeeEe-----------cc----------CCCCCeEEEEEeC----CCCCCCCc
Q 019326           51 SGTAAASGGTDDTIHLYDLST----SSSLGAI-----------HH----------HESSSVTSLAFYT----PQNLSVPR  101 (343)
Q Consensus        51 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~-----------~~----------~~~~~v~~l~~~~----~~~~~~~~  101 (343)
                      +...++.+..||.+.......    +......           .+          ........++++.    +.     .
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  231 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-----T  231 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-----T
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-----C
Confidence            567788888899888877664    1111111           00          0023455566655    33     6


Q ss_pred             eEEEeeCCCeEEEEECCCcceeeeee
Q 019326          102 NLFSTSADGFVSIFDADPFVLLTSVK  127 (343)
Q Consensus       102 ~l~s~~~dg~i~iwd~~~~~~~~~~~  127 (343)
                      ++++.+.|+++++||+.+++++.+..
T Consensus       232 ~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  232 FLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEec
Confidence            99999999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.18  E-value=3.3  Score=37.83  Aligned_cols=70  Identities=19%  Similarity=0.158  Sum_probs=43.5

Q ss_pred             ceEEEeeCCCeEEEEECCC----cceeeee-e---------------------eccccEEEEEEec----CCCEEEEEeC
Q 019326          101 RNLFSTSADGFVSIFDADP----FVLLTSV-K---------------------VHKKGVNDLAVHH----SGKLALTVGR  150 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~----~~~~~~~-~---------------------~~~~~v~~i~~~~----~~~~l~~~~~  150 (343)
                      ..++.+..||.+.......    +...... .                     .....+..++.+.    +..++++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            5788888999888877643    1111110 0                     0123455666666    6689999999


Q ss_pred             CCeEEEEEccCCceeEEEEc
Q 019326          151 DDCLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~~  170 (343)
                      |+++++||+.+++++.....
T Consensus       239 D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  239 DHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             TSEEEEEETTTTCEEEEEET
T ss_pred             CCeEEEEECCCCeEEEEecc
Confidence            99999999999998665433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.11  E-value=23  Score=36.39  Aligned_cols=166  Identities=10%  Similarity=0.024  Sum_probs=96.9

Q ss_pred             EeCCCeEEEEEccCCceeE-----------------EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc----cceeEE
Q 019326          148 VGRDDCLAMVNLVRGRRSF-----------------YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE----DAKLLC  206 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~~~~~  206 (343)
                      +-.||.|..||-.+.....                 ..-..+.+..+.+++....++-+.+..+.+=-.+    -+..+.
T Consensus       619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~  698 (1774)
T PF11725_consen  619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALE  698 (1774)
T ss_pred             eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcccc
Confidence            4457999999976543110                 1112345666666666555555444433321111    123333


Q ss_pred             EecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          207 ELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      -+. ...|+.++.-+++.+++-+..|.+..+. ..+.++.--..+-.+.|..|++....          -|.+...+|.+
T Consensus       699 Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~----------nL~Alt~~G~L  766 (1774)
T PF11725_consen  699 GLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQ----------NLYALTSTGEL  766 (1774)
T ss_pred             CCC-cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeecccc----------ceeEecCCCce
Confidence            333 5668888888888899999999999998 66664433222556899999998876          47777788887


Q ss_pred             EEEeccCccccCCC-------cccccccccceeEEEcCCCCceecc
Q 019326          287 CVWDVRMAIKEKPL-------PLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       287 ~vwd~~~~~~~~~~-------~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      +--+-+........       .-.......+|.++....+..+.+.
T Consensus       767 f~~~k~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~  812 (1774)
T PF11725_consen  767 FRLPKEAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQ  812 (1774)
T ss_pred             eecCHHHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEE
Confidence            76443332111111       1112234456777766666665543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.94  E-value=1.2  Score=23.62  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             eEEEEeCCCcEEEEECCCCceeEEec
Q 019326          224 VLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      .++.++.+|.|+-+|.++|+.+..+.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            46677999999999999999998887

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.89  E-value=3.2  Score=35.87  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             ceEEEeeCCCeEEEE-ECCC-cc----eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcc
Q 019326          101 RNLFSTSADGFVSIF-DADP-FV----LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEA  174 (343)
Q Consensus       101 ~~l~s~~~dg~i~iw-d~~~-~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  174 (343)
                      .-++.++.||.|.-| |.+. +.    .++.++....++..+.-..+.+-+++-+..|++..+.....+.+.....-..+
T Consensus       281 ~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~  360 (733)
T COG4590         281 FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP  360 (733)
T ss_pred             eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence            568888999998877 4322 22    22222322334444444444567888888999998887666666555556678


Q ss_pred             eEEEEeCCCCEEEEEeCCcEEEEEccccee
Q 019326          175 SLIKFDGSGEKFFMVTEEKVGIHQAEDAKL  204 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  204 (343)
                      ..++++|.+.+++.-..++++++.+++..+
T Consensus       361 ~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         361 QLVAMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             ceeeeCcccchheeecCCceEEEEecCCCC
Confidence            889999999999999999999998877543

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=89.33  E-value=5  Score=37.49  Aligned_cols=146  Identities=15%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             eEEEeeCCCeEEEEEcCCC---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-----cceeee
Q 019326           54 AAASGGTDDTIHLYDLSTS---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-----FVLLTS  125 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~  125 (343)
                      .+..|+.++.|-++.-..+   +....+...+...+.++.+++..       +..|.-||++-.|-...     +++-..
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S-------lgagl~dgt~a~y~rap~gSwd~ep~~~  621 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS-------LGAGLIDGTLAVYGRAPSGSWDGEPNIS  621 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc-------cccCccCCccccccCCCCCCCCCCCccc
Confidence            4677888888888876522   12222222225778888887654       67777788776654321     112222


Q ss_pred             eeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE----EEcCCcceEEEEeCCCCEEEEEeCCcEEEEEccc
Q 019326          126 VKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY----HKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAED  201 (343)
Q Consensus       126 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  201 (343)
                      +.....+|.+.++..+   ++.++.+|.+.++...+......    ......|+.+....++-+++.+....+++++..+
T Consensus       622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet  698 (925)
T KOG3522|consen  622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET  698 (925)
T ss_pred             cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence            2333457888887765   56778899999998877554332    2344678888888777777777777777777666


Q ss_pred             ceeEEEec
Q 019326          202 AKLLCELD  209 (343)
Q Consensus       202 ~~~~~~~~  209 (343)
                      ....+.+.
T Consensus       699 l~hlqd~n  706 (925)
T KOG3522|consen  699 LWHLQDSN  706 (925)
T ss_pred             cCCccccc
Confidence            55444443

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=89.29  E-value=1.2  Score=23.86  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=16.5

Q ss_pred             CCCeEEEEeCCCcEEEEECCC
Q 019326          221 ENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       221 ~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      .++.++.++.||.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            567899999999999999764

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=89.21  E-value=1.2  Score=21.55  Aligned_cols=26  Identities=12%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             CCeEEEEecCceEEEeeCCCeEEEEE
Q 019326           43 SPITTVAVSGTAAASGGTDDTIHLYD   68 (343)
Q Consensus        43 ~~v~~l~~~~~~l~s~~~dg~i~iwd   68 (343)
                      ..|.+++....+++.+...+.+|+|.
T Consensus         2 E~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccCCEEEEEeCCCeEEecC
Confidence            35788898889999999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.08  E-value=4  Score=37.69  Aligned_cols=68  Identities=15%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      ...++++.-+|.+     +.++.++.||.|++|+....+...... ...+-..+.|...|  |++...|..+.-|.
T Consensus        14 ~e~~~aiqshp~~-----~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGG-----QSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCC-----ceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence            3567788888988     789999999999999986544322211 12233345555443  56666677676665

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.62  E-value=11  Score=30.12  Aligned_cols=139  Identities=12%  Similarity=0.040  Sum_probs=73.6

Q ss_pred             EEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-C--CeEEEEECCCcceeeeee------eccccEE
Q 019326           64 IHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-D--GFVSIFDADPFVLLTSVK------VHKKGVN  134 (343)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~------~~~~~v~  134 (343)
                      -.+||+.+++... +....+.-..+-.+.++|     ++|.+|+. +  ..+++++.........+.      .....--
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG-----~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDG-----RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCC-----CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence            4588988875433 222213334444677888     78888876 2  357788764311011111      1122233


Q ss_pred             EEEEecCCCEEEEEeCCCe-EEEEEccCC-ceeEEEEcC---------CcceEEEEeCCCCEEEEEeCCcEEEEEcccce
Q 019326          135 DLAVHHSGKLALTVGRDDC-LAMVNLVRG-RRSFYHKIG---------KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK  203 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~d~~-i~~wd~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  203 (343)
                      +....|||+.|+.|+.... ..+|.-+.. ........-         .--..+.+.|+|+.|+.+.. .-.+||..+.+
T Consensus       122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~  200 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNT  200 (243)
T ss_pred             cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCe
Confidence            4455679999999988743 344443211 111111110         11123666788888877743 34566877777


Q ss_pred             eEEEec
Q 019326          204 LLCELD  209 (343)
Q Consensus       204 ~~~~~~  209 (343)
                      .++.++
T Consensus       201 v~~~lP  206 (243)
T PF07250_consen  201 VVRTLP  206 (243)
T ss_pred             EEeeCC
Confidence            666655

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00564 PQQ beta-propeller repeat

Probab=88.34  E-value=1.6  Score=21.97  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=22.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      +..++.++.+|.+..+|.++|+.+..+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            446888899999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.10  E-value=16  Score=31.42  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=53.0

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEee-----------CCC-eEEEEECCC--cc--eeeeeeeccccEEEEEEecCCCEEEE
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTS-----------ADG-FVSIFDADP--FV--LLTSVKVHKKGVNDLAVHHSGKLALT  147 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~~  147 (343)
                      .....|+|.+++     +++++-.           ..+ .|.+++-..  ++  ....+.........+++.+++ +++ 
T Consensus        14 ~~P~~ia~d~~G-----~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-   86 (367)
T TIGR02604        14 RNPIAVCFDERG-----RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-   86 (367)
T ss_pred             CCCceeeECCCC-----CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-
Confidence            445678898888     4444432           223 677776432  22  223333333456889999888 444 


Q ss_pred             EeCCCeEEEEEccCC-----c-eeEEEEc-------CCcceEEEEeCCCCEEEEE
Q 019326          148 VGRDDCLAMVNLVRG-----R-RSFYHKI-------GKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~-----~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~  189 (343)
                      +......++.|....     + .+.....       .+....+.+.|+|.+.++.
T Consensus        87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~  141 (367)
T TIGR02604        87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH  141 (367)
T ss_pred             eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec
Confidence            444443334344321     1 1111112       2336679999999866654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.80  E-value=14  Score=30.34  Aligned_cols=111  Identities=14%  Similarity=0.030  Sum_probs=0.0

Q ss_pred             EEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee------CCCeEEEEECCCcceeeeeeecc-----cc
Q 019326           64 IHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS------ADGFVSIFDADPFVLLTSVKVHK-----KG  132 (343)
Q Consensus        64 i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~-----~~  132 (343)
                      |++||..+.+-...-.+- .+.|++|.|..+.     +++++|.      ....+..||..+ +....+..-.     ++
T Consensus        18 lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~-----~Llv~G~ft~~~~~~~~la~yd~~~-~~w~~~~~~~s~~ipgp   90 (281)
T PF12768_consen   18 LCLYDTDNSQWSSPGNGI-SGTVTDLQWASNN-----QLLVGGNFTLNGTNSSNLATYDFKN-QTWSSLGGGSSNSIPGP   90 (281)
T ss_pred             EEEEECCCCEeecCCCCc-eEEEEEEEEecCC-----EEEEEEeeEECCCCceeEEEEecCC-CeeeecCCcccccCCCc


Q ss_pred             EEEEEEecCCCEEEE-----EeCCCeEEEEEccCCceeEE--EEcCCcceEEEEeC
Q 019326          133 VNDLAVHHSGKLALT-----VGRDDCLAMVNLVRGRRSFY--HKIGKEASLIKFDG  181 (343)
Q Consensus       133 v~~i~~~~~~~~l~~-----~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~  181 (343)
                      |..+.+..+...=+.     ...+..|..||-.+-..+..  ......+..+.+-|
T Consensus        91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.76  E-value=6  Score=29.76  Aligned_cols=31  Identities=19%  Similarity=0.093  Sum_probs=25.8

Q ss_pred             ccEEEEEEecCC------CEEEEEeCCCeEEEEEccC
Q 019326          131 KGVNDLAVHHSG------KLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus       131 ~~v~~i~~~~~~------~~l~~~~~d~~i~~wd~~~  161 (343)
                      ..+..++|+|.|      .+|++...++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954      5788889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.59  E-value=21  Score=32.09  Aligned_cols=174  Identities=12%  Similarity=-0.002  Sum_probs=0.0

Q ss_pred             eEEEe---eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           54 AAASG---GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        54 ~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      ++++.   ...+...+.|.+ |...+.+... ......+...+++     .+++...  ..+..+|+.. +.+..+....
T Consensus       117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~-~~~~~~~~~l~nG-----~ll~~~~--~~~~e~D~~G-~v~~~~~l~~  186 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLD-SGSDNSFKQLPNG-----NLLIGSG--NRLYEIDLLG-KVIWEYDLPG  186 (477)
T ss_dssp             EEEEETT--BEEEEEEEETT-S-EEEEE-GG-GT--SSEEE-TTS------EEEEEB--TEEEEE-TT---EEEEEE--T
T ss_pred             EEEeCCCCCCCceEEEECCC-ccEEEEEccC-ccccceeeEcCCC-----CEEEecC--CceEEEcCCC-CEEEeeecCC


Q ss_pred             cc---EEEEEEecCCCEEEEEeC-------------CCeEEEEEccCCceeEEEEcCCcc--------------------
Q 019326          131 KG---VNDLAVHHSGKLALTVGR-------------DDCLAMVNLVRGRRSFYHKIGKEA--------------------  174 (343)
Q Consensus       131 ~~---v~~i~~~~~~~~l~~~~~-------------d~~i~~wd~~~~~~~~~~~~~~~~--------------------  174 (343)
                      ..   -..+...|+|++|+.+..             ...|..+| .+|+.+.........                    
T Consensus       187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~  265 (477)
T PF05935_consen  187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG  265 (477)
T ss_dssp             TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred             cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC


Q ss_pred             --------eEEEEeC-CCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEE-----------------------eeecC
Q 019326          175 --------SLIKFDG-SGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILC-----------------------AAPGE  221 (343)
Q Consensus       175 --------~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~-----------------------~~~~~  221 (343)
                              +++.+.+ ++.+++++ ....|...|.++++....+..+.....                       ..+..
T Consensus       266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~  345 (477)
T PF05935_consen  266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFW  345 (477)
T ss_dssp             TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----S
T ss_pred             CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccc


Q ss_pred             CCeEEEEeCCC---cEEEEE
Q 019326          222 NGVLFTGGEDR---SITAWD  238 (343)
Q Consensus       222 ~~~l~~~~~dg---~i~i~d  238 (343)
                      +++-+.--.+|   .|.+||
T Consensus       346 gQH~~~~~~~g~~~~l~vFD  365 (477)
T PF05935_consen  346 GQHTAHLIPDGPQGNLLVFD  365 (477)
T ss_dssp             S-EEEEE-TTS---SEEEEE
T ss_pred             cccceEEcCCCCeEEEEEEE

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=87.30  E-value=2  Score=22.73  Aligned_cols=28  Identities=18%  Similarity=0.120  Sum_probs=23.8

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .++.++.+|.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566799999999999999999988654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.30  E-value=14  Score=29.84  Aligned_cols=135  Identities=12%  Similarity=0.017  Sum_probs=80.3

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEee---CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE-c
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTS---ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN-L  159 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd-~  159 (343)
                      ..+.+.++++++     +.++...   ....++++...  ....... ....+..-.|++++...+....+...+++. .
T Consensus        24 ~~~~s~AvS~dg-----~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   24 YDVTSPAVSPDG-----SRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             ccccceEECCCC-----CeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence            378899999999     5555544   33355555443  2222222 233677788999987766666666666663 3


Q ss_pred             cCCcee-EEEEcC---CcceEEEEeCCCCEEEEEe----CCcEEEEEcc---cc--e----eEEEec-CCcceEEeeecC
Q 019326          160 VRGRRS-FYHKIG---KEASLIKFDGSGEKFFMVT----EEKVGIHQAE---DA--K----LLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       160 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~---~~--~----~~~~~~-~~~~i~~~~~~~  221 (343)
                      ..+... ......   ..|..+.++|+|.+++...    ++.+.+--+.   .+  .    ...... ....+..+.|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            333321 111111   2799999999999998884    6677766543   22  0    111111 246788999986


Q ss_pred             CCeEE
Q 019326          222 NGVLF  226 (343)
Q Consensus       222 ~~~l~  226 (343)
                      +..|+
T Consensus       176 ~~~L~  180 (253)
T PF10647_consen  176 DSTLV  180 (253)
T ss_pred             CCEEE
Confidence            55333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=87.27  E-value=11  Score=30.36  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             CCCeEEEEEeCCCCCC--CCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEE---EecCCCEEEEEeCCCeEEEE
Q 019326           83 SSSVTSLAFYTPQNLS--VPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLA---VHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~---~~~~~~~l~~~~~d~~i~~w  157 (343)
                      ...|+|++--......  ....|+.|.++|.|.|.|......+..++...-++.-.+   |..-...++++++||.|++.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            4678888765443221  346899999999999999998888887775555443222   22123467888889988764

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.27  E-value=29  Score=33.47  Aligned_cols=244  Identities=11%  Similarity=0.037  Sum_probs=0.0

Q ss_pred             CCCeE-EEEecCceEEEeeCCCeEEEEEcCCCeeeeEecc-----------CCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           42 LSPIT-TVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHH-----------HESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        42 ~~~v~-~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ...|. |++-.++.++.|+.+|.+.+|.+...........           + ..+|..+...+.-      .++-.-.|
T Consensus        15 ~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~-kk~i~~l~~~~~~------~~ll~l~d   87 (877)
T KOG2063|consen   15 PLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS-KKPINKLLVCASL------ELLLILSD   87 (877)
T ss_pred             CCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc-cchhHHHhhcchh------cchheecC


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecC---C--CEEEEEe-CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCC
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS---G--KLALTVG-RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~--~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
                      +.|.++++.+.+.......-.+..........   +  .+.++.+ ....+.+.-.............-+....+..-.+
T Consensus        88 sqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  167 (877)
T KOG2063|consen   88 SQIAVHKLPELEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCG  167 (877)
T ss_pred             CcceeeecCcccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccc


Q ss_pred             CEEEEE-eCCcEEEEEcccceeEEEec----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCc-eeEEecccccccEE
Q 019326          184 EKFFMV-TEEKVGIHQAEDAKLLCELD----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGK-VAYCIEDAHSARVK  257 (343)
Q Consensus       184 ~~~~~~-~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~  257 (343)
                      ..+.++ .+....++...++.....+.    ....-..+....++..+..+.|+...+-|..... .-.++.  -.....
T Consensus       168 ~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~--ws~~P~  245 (877)
T KOG2063|consen  168 HIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLV--WSEVPL  245 (877)
T ss_pred             eeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceE--ecccch


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCC-cccccc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL-PLAEAK  306 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~  306 (343)
                      ++.+.+.           ++++-+.. .|.||+..++...+.+ ++....
T Consensus       246 ~v~~~~P-----------YlIa~~~~-~veI~s~~~~qlvQSI~~~~~~~  283 (877)
T KOG2063|consen  246 SVVVESP-----------YLIALLDR-SVEIRSKLDGQLVQSITPLSNGR  283 (877)
T ss_pred             hhcccCc-----------eEEEEccc-cEEEEeccCHHHhhccccccccc

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.88  E-value=15  Score=29.69  Aligned_cols=139  Identities=14%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             CeEEEEec--CceEEEee-CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE-CCC
Q 019326           44 PITTVAVS--GTAAASGG-TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD-ADP  119 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~  119 (343)
                      .+.+.+.+  ++.++... .++.-.+|-...+........  ...+..-.|.+++     ...+....+...+++. ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g-----~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDG-----WVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCC-----CEEEEEcCCCceEEEEecCC
Confidence            57777777  66555544 223333333333333333322  3477788899987     4455545555666663 223


Q ss_pred             ccee-eeeeec--cccEEEEEEecCCCEEEEEe---CCCeEEEEEccCCcee---------EEE-EcCCcceEEEEeCCC
Q 019326          120 FVLL-TSVKVH--KKGVNDLAVHHSGKLALTVG---RDDCLAMVNLVRGRRS---------FYH-KIGKEASLIKFDGSG  183 (343)
Q Consensus       120 ~~~~-~~~~~~--~~~v~~i~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~---------~~~-~~~~~~~~~~~~~~~  183 (343)
                      ++.. ......  ...|..+.++|||..++...   .++.|.+--+.....-         ... .....+..+.|.+++
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            2221 112211  12899999999998877666   3577777655422110         011 123567889999999


Q ss_pred             CEEEEE
Q 019326          184 EKFFMV  189 (343)
Q Consensus       184 ~~~~~~  189 (343)
                      .+++..
T Consensus       178 ~L~V~~  183 (253)
T PF10647_consen  178 TLVVLG  183 (253)
T ss_pred             EEEEEe
Confidence            988888

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.87  E-value=19  Score=30.93  Aligned_cols=190  Identities=17%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeC----CCCCCCCceEEEee-CC---CeEEEEECCCc-ce
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYT----PQNLSVPRNLFSTS-AD---GFVSIFDADPF-VL  122 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~~~~l~s~~-~d---g~i~iwd~~~~-~~  122 (343)
                      ..+++....++-+.+||++ |+.+..+..   +.++.+....    .+.   .--|+.++ .+   .+|++|.+... ..
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~---Gr~NNVDvrygf~l~g~---~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV---GRPNNVDVRYGFPLNGK---TVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-S---S-EEEEEEEEEEEETTE---EEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecC---CCcceeeeecceecCCc---eEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            4577777888889999998 666666642   3444444321    220   01244444 32   47999977531 12


Q ss_pred             eeeeee-------ccccEEEEEEe--c-CC-CEEEEEeCCCeEEEEEccC---C----ceeEEEEcCCcceEEEEeCCCC
Q 019326          123 LTSVKV-------HKKGVNDLAVH--H-SG-KLALTVGRDDCLAMVNLVR---G----RRSFYHKIGKEASLIKFDGSGE  184 (343)
Q Consensus       123 ~~~~~~-------~~~~v~~i~~~--~-~~-~~l~~~~~d~~i~~wd~~~---~----~~~~~~~~~~~~~~~~~~~~~~  184 (343)
                      +..+..       ....+..+|+-  + ++ -+.+....+|.+..|.+..   +    +.++.+....++..|.......
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETG  220 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccC
Confidence            222221       12346777763  3 34 3677778899998888752   2    2467778888999999999999


Q ss_pred             EEEEE-eCCcEEEEEccc-----ceeEEEec---CCcceEEeeec---CC-CeEEE-EeCCCcEEEEECCCC-ceeEEe
Q 019326          185 KFFMV-TEEKVGIHQAED-----AKLLCELD---GKKRILCAAPG---EN-GVLFT-GGEDRSITAWDTNSG-KVAYCI  248 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~-----~~~~~~~~---~~~~i~~~~~~---~~-~~l~~-~~~dg~i~i~d~~~~-~~~~~~  248 (343)
                      .++.+ .+.-|.-|+.+.     ++.+....   ....+..+++.   ++ .||++ .-.+++..+|+.... ..+..+
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            99999 777788887762     22222222   12445566653   22 35554 445778999998753 334444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=86.68  E-value=19  Score=30.62  Aligned_cols=109  Identities=12%  Similarity=0.083  Sum_probs=52.0

Q ss_pred             ecCceEEEeeCC-------CeEEEEEcCCCeeeeEec--cCCCC-Ce-EEEEEeCCCCCCCCceEEEeeCC-----CeEE
Q 019326           50 VSGTAAASGGTD-------DTIHLYDLSTSSSLGAIH--HHESS-SV-TSLAFYTPQNLSVPRNLFSTSAD-----GFVS  113 (343)
Q Consensus        50 ~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~--~~~~~-~v-~~l~~~~~~~~~~~~~l~s~~~d-----g~i~  113 (343)
                      ..+.+++.|+.+       ..+.+||+.+.+-...-.  ..... .. .+++.. ++     ++++.|+.+     ..+.
T Consensus        31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~-----~iyv~GG~~~~~~~~~v~  104 (341)
T PLN02153         31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GT-----KLYIFGGRDEKREFSDFY  104 (341)
T ss_pred             ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CC-----EEEEECCCCCCCccCcEE
Confidence            346666666653       257788887764332111  01011 00 112222 23     567777753     3577


Q ss_pred             EEECCCcc--eeeeeee---ccccEEEEEEecCCCEEEEEeCC-----------CeEEEEEccCCce
Q 019326          114 IFDADPFV--LLTSVKV---HKKGVNDLAVHHSGKLALTVGRD-----------DCLAMVNLVRGRR  164 (343)
Q Consensus       114 iwd~~~~~--~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d-----------~~i~~wd~~~~~~  164 (343)
                      +||+.+.+  .+..+..   ........+..-++++++.|+.+           ..+.+||..+.+-
T Consensus       105 ~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        105 SYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             EEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            88886533  2222210   11111112222345667777753           2477888877653

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=86.48  E-value=9.3  Score=35.86  Aligned_cols=140  Identities=15%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEE--------EEcCCCee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHL--------YDLSTSSS   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~i--------wd~~~~~~   74 (343)
                      +..|+.++.|.++.-..       +...+. ...........+.++.++...+..|.-||++-.        ||.+   +
T Consensus       550 ic~gtq~ssisissss~-------~s~ke~-~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~e---p  618 (925)
T KOG3522|consen  550 ICLGTQTSSISISSSSL-------DSIKEV-TSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGE---P  618 (925)
T ss_pred             ccccCccceeEEeeccC-------Ccccce-eccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCC---C
Confidence            56788889999987652       111111 111122234667788887555555666666544        4433   2


Q ss_pred             eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee---ccccEEEEEEecCCCEEEEEeCC
Q 019326           75 LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV---HKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        75 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      ...+... ..+|.++++..        -++.++.+|.|.++...+......+..   |...|+++....++-+++..+. 
T Consensus       619 ~~~~~~g-~lPvrsla~~e--------d~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG-  688 (925)
T KOG3522|consen  619 NISIPTG-SLPVRSLAFQE--------DFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASG-  688 (925)
T ss_pred             ccccccC-Cccccchhhhh--------ceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCC-
Confidence            2333333 57788888764        367788999999999977665555544   4457888888876644444333 


Q ss_pred             CeEEEEEccCCc
Q 019326          152 DCLAMVNLVRGR  163 (343)
Q Consensus       152 ~~i~~wd~~~~~  163 (343)
                      ..+++++.++..
T Consensus       689 ~~~rlfhtetl~  700 (925)
T KOG3522|consen  689 DEERLFHTETLW  700 (925)
T ss_pred             CEEEEecccccC
Confidence            355655555443

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=86.47  E-value=36  Score=33.76  Aligned_cols=175  Identities=14%  Similarity=0.112  Sum_probs=88.0

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeC---C-CCCCCCceEEEeeC---------CCeEEEEEC-----CCccee
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYT---P-QNLSVPRNLFSTSA---------DGFVSIFDA-----DPFVLL  123 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~---~-~~~~~~~~l~s~~~---------dg~i~iwd~-----~~~~~~  123 (343)
                      ..|.+-+..+++.+..+.-.....|.+++...   . .......+|++|..         -|.+.++|+     +.+++.
T Consensus      1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred             ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence            34555555566555544433234455554431   1 11122357887764         378999997     233322


Q ss_pred             eee-------eeccccEEEEEEecCCCEEEEEeCCCeEEEEEc-cCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcE
Q 019326          124 TSV-------KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL-VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKV  194 (343)
Q Consensus       124 ~~~-------~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  194 (343)
                      ...       +..++.|..++= -+|. |+++ ....|.+|++ +....+...-..-++.......-.++++.+ --..+
T Consensus      1084 t~~KlKel~~eE~KGtVsavce-V~G~-l~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksi 1160 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCE-VRGH-LLSS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSI 1160 (1366)
T ss_pred             ccceeeeeehhhcccceEEEEE-eccE-EEEc-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhce
Confidence            211       124566666553 3454 4443 3457999999 444433332233333333443444555555 33444


Q ss_pred             EEEEccc-ceeEEEec---CCcceEEeeec-CCC--eEEEEeCCCcEEEEEC
Q 019326          195 GIHQAED-AKLLCELD---GKKRILCAAPG-ENG--VLFTGGEDRSITAWDT  239 (343)
Q Consensus       195 ~~~d~~~-~~~~~~~~---~~~~i~~~~~~-~~~--~l~~~~~dg~i~i~d~  239 (343)
                      .+..... ...+.-+.   ..-.+.+..|- ++.  .++++..++.|++|-.
T Consensus      1161 sfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1161 SFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             EEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            4433322 12222222   22335555554 433  7888899999988754

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.02  E-value=36  Score=33.25  Aligned_cols=172  Identities=14%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCeeeeEeccCC---CCCeEEEEEeCCCCCCCCceEEEeeC-----------CCeEEEEEC-CCcceeeeee
Q 019326           63 TIHLYDLSTSSSLGAIHHHE---SSSVTSLAFYTPQNLSVPRNLFSTSA-----------DGFVSIFDA-DPFVLLTSVK  127 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~-~~~~~~~~~~  127 (343)
                      .|++.|..+++.+..+....   .-.+.++.|+....   ..++++|..           +|.++.|++ +.++.+.-+.
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~---~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh  930 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEY---QPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH  930 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCC---ceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence            48888888777666554320   23456666665542   123333332           244666665 3333222221


Q ss_pred             e--ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC-cceEEEEeCCCCEEEEE-eCCcEE--EEEccc
Q 019326          128 V--HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK-EASLIKFDGSGEKFFMV-TEEKVG--IHQAED  201 (343)
Q Consensus       128 ~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~i~--~~d~~~  201 (343)
                      .  -.+.|  .+..|-..++++ +....+++||+-..+.++...... +.........+.+++++ ....+.  .|+...
T Consensus       931 ~T~~~~~v--~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen  931 KTEIPGPV--GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred             ccCCCccc--eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC
Confidence            1  12234  344555555554 445689999998776655544443 22222333356777777 333333  344333


Q ss_pred             ceeEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECC
Q 019326          202 AKLLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       202 ~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~  240 (343)
                      .+...-..  -+..++++.+-+.+.++.+..=|.+.+..+.
T Consensus      1008 n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence            33333332  3445777777677888888888888777654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.81  E-value=32  Score=32.50  Aligned_cols=92  Identities=9%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             eEEEEeCCCCEEEEE-eCCc-----EEEEEcc---cceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCcee
Q 019326          175 SLIKFDGSGEKFFMV-TEEK-----VGIHQAE---DAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~-~~~~-----i~~~d~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                      ..+.|-|+|..+++- .|+.     +..+..+   .|+.-............+|.-...+.+....+.|.+|-..+-.-.
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY  329 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY  329 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence            348999999999887 4432     3333321   122212222334455556643333334455678999977654322


Q ss_pred             EEecccccccEEEEEEEecCCC
Q 019326          246 YCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      .... -.-..+.-+.|+|...+
T Consensus       330 LK~e-~~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         330 LKVE-RQIPGISYVKWHPEEKN  350 (1243)
T ss_pred             EEEe-ecCCCcceeeeccccCc
Confidence            2222 22334555667766553

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=84.59  E-value=22  Score=29.62  Aligned_cols=227  Identities=12%  Similarity=-0.025  Sum_probs=108.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCee----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSS----   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~----   74 (343)
                      .|+.|+.+|...+ +...        .......+    .+..+|+++...  -+ .++.++....++.+++..-..    
T Consensus        15 ~lL~GTe~Gly~~-~~~~--------~~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~   81 (302)
T smart00036       15 WLLVGTEEGLYVL-NISD--------QPGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEA   81 (302)
T ss_pred             EEEEEeCCceEEE-Eccc--------CCCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhc
Confidence            5788888886544 4442        11112222    356789999887  33 344455555699999843221    


Q ss_pred             -----------eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----ceeeee---e-eccccEEE
Q 019326           75 -----------LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----VLLTSV---K-VHKKGVND  135 (343)
Q Consensus        75 -----------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~---~-~~~~~v~~  135 (343)
                                 ....-.+ ..............    ..++.+....+|.++.....    .....+   . ....++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~-tkGc~~~~v~~~~~----~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~  156 (302)
T smart00036       82 LGSARLVIRKNVLTKIPD-TKGCHLCAVVNGKR----SLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFV  156 (302)
T ss_pred             cCCccccccccceEeCCc-CCceEEEEEEcCCC----cEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceE
Confidence                       0111123 23233333332221    23445555567777644221    112211   0 01123333


Q ss_pred             EEEecC--CCEEEEEeCCCeEEEEEccC--Ccee----E--EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEccccee-
Q 019326          136 LAVHHS--GKLALTVGRDDCLAMVNLVR--GRRS----F--YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKL-  204 (343)
Q Consensus       136 i~~~~~--~~~l~~~~~d~~i~~wd~~~--~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-  204 (343)
                      +..+++  ...+..|+..+...++++..  ....    .  .......+.++..-+++ .++.+.+......|....+. 
T Consensus       157 ~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~-e~Llc~~~~~v~Vn~~G~~~~  235 (302)
T smart00036      157 ELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRD-EFLLCYDEFGVFVNLYGKRRS  235 (302)
T ss_pred             eeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCC-eEEEEECcEEEEEeCCCCccc
Confidence            333332  34666666643344444432  1100    0  00001023333333333 45555555555555543121 


Q ss_pred             -EEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          205 -LCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       205 -~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                       ...+.-.....++++.. .++++-. +..|.++++.+++.++++.
T Consensus       236 r~~~l~w~~~p~~~~~~~-pyll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      236 RNPILHWEFMPESFAYHS-PYLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             cceEEEcCCcccEEEEEC-CEEEEEc-CCcEEEEECCCCceEEEEe
Confidence             12333445566777753 5555554 4559999999999888887

Unpublished observations.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.91  E-value=12  Score=28.16  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          253 SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       253 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ...+.+++|+|.+-.   ...+-+|+....+|.|.||.-..
T Consensus        85 ~~~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cccEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence            348899999997742   12244889999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.37  E-value=22  Score=28.52  Aligned_cols=135  Identities=9%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC---CeEEEEEccCC--ceeE-----EEEcCCcceEEEEeC
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD---DCLAMVNLVRG--RRSF-----YHKIGKEASLIKFDG  181 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~i~~wd~~~~--~~~~-----~~~~~~~~~~~~~~~  181 (343)
                      -.+||+.+++....-......+.+-.+.++|+++.+|+..   ..+++++....  .+..     ....+..-......+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            4578887755322211222344455678999999998862   34777776440  1111     112223344566678


Q ss_pred             CCCEEEEE-eC-CcEEEEEccc-ceeEEE---ec--------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          182 SGEKFFMV-TE-EKVGIHQAED-AKLLCE---LD--------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       182 ~~~~~~~~-~~-~~i~~~d~~~-~~~~~~---~~--------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                      +|+.++++ .. .....|.... ......   +.        .-.+...+.. ++++++.+..+  -.|||..+.+.++.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~--s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRG--SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCC--cEEEeCCCCeEEee
Confidence            99999888 33 3344444321 111111   11        1112222222 56666666554  44679888877777


Q ss_pred             ec
Q 019326          248 IE  249 (343)
Q Consensus       248 ~~  249 (343)
                      ++
T Consensus       205 lP  206 (243)
T PF07250_consen  205 LP  206 (243)
T ss_pred             CC
Confidence            66

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	343
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.61
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.49
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.39
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.38
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.37
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.34
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.26
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.23
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.22
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.21
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.09
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.06
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.03
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.85
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.63
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.62
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.6
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.56
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.5
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.4
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.23
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.12
3ott_A	758	Two-component system sensor histidine kinase; beta	98.12
3ott_A	758	Two-component system sensor histidine kinase; beta	98.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.01
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.91
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.85
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.84
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.7
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.61
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.48
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.42
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.41
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	97.26
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.2
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.15
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.1
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.06
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.0
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.96
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.94
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.85
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.83
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.35
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.59
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.95
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.34
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.74
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.73
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	86.12
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.29
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	85.13
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.1
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.62
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	83.6

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.1e-47  Score=314.56  Aligned_cols=265  Identities=19%  Similarity=0.256  Sum_probs=244.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++|++...          .......+.+|...|.+++|+  +.++++++.|+.|++||+.+++.+..+.
T Consensus        50 ~l~tgs~D~~v~vW~~~~~----------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~  119 (321)
T 3ow8_A           50 TVVTGSLDDLVKVWKWRDE----------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID  119 (321)
T ss_dssp             EEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCC----------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe
Confidence            4899999999999999761          234556788999999999999  7899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .+ ...+.+++|+|++     ++|++|+.||.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus       120 ~~-~~~~~~~~~spdg-----~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~  193 (321)
T 3ow8_A          120 AG-PVDAWTLAFSPDS-----QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI  193 (321)
T ss_dssp             CC-TTCCCCEEECTTS-----SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CC-CccEEEEEECCCC-----CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            88 8899999999999     89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEE
Q 019326          160 VRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSIT  235 (343)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~  235 (343)
                      ++++.+.... +...+.+++|+|++++++++ .|+.|++||+++++....+. |...|.+++|++ +.+|++++.|+.|+
T Consensus       194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            9998776654 45789999999999999999 89999999999999888887 788899999994 67999999999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +||+++++++..+. +|...|.+++|++++.         +|++++.||.|++||..
T Consensus       274 iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~---------~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          274 VWDVGTRTCVHTFF-DHQDQVWGVKYNGNGS---------KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTTTEEEEEEC-CCSSCEEEEEECTTSS---------EEEEEETTCCEEEEECC
T ss_pred             EEeCCCCEEEEEEc-CCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEeCC
Confidence            99999999999998 9999999999999887         99999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-47  Score=328.77  Aligned_cols=282  Identities=20%  Similarity=0.299  Sum_probs=255.9

Q ss_pred             eEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           35 LFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      ...+.+|.++|++++|+  +.+|++|+.||.|++||+.+++....+.+| ...|.+++|+|++     ++|++|+.|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~-----~~l~sgs~D~~i  174 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSG-----KLLASCSADMTI  174 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTS-----SEEEEEETTSCC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCC-----CEEEEEeCCCeE
Confidence            45677999999999999  789999999999999999999999999999 9999999999998     899999999999


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-e
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~  190 (343)
                      ++||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||++++..+..+. +...+..+.++|++.+++++ .
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~  254 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  254 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence            999999999999999999999999999999999999999999999999998776554 45678999999999999999 8


Q ss_pred             CCcEEEEEcccceeEEEec-CCcceEEeeecC---------------------CCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          191 EEKVGIHQAEDAKLLCELD-GKKRILCAAPGE---------------------NGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~---------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      |+.|++||+.+++....+. |...|.+++|++                     +.+|++|+.|+.|++||+++++++..+
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            9999999999999888886 788999999985                     458999999999999999999999999


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      . +|...|++++|+|++.         +|++++.||.|++||++++....   .. ..+...|.+++|+|++.+++.+..
T Consensus       335 ~-~h~~~v~~v~~~~~g~---------~l~s~s~D~~i~vwd~~~~~~~~---~~-~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          335 V-GHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRCMK---TL-NAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             E-CCSSCEEEEEECSSSS---------CEEEEETTTEEEEECCTTSCCCE---EE-ECCSSCEEEEEECSSSSCEEEEET
T ss_pred             E-CCCCcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCceEE---EE-cCCCCcEEEEEEcCCCCEEEEEeC
Confidence            8 9999999999999887         99999999999999998764221   11 234567999999999999999999


Q ss_pred             CCCCCCcc
Q 019326          329 DSAPKGEE  336 (343)
Q Consensus       329 ~~~~~~~~  336 (343)
                      |+.++.++
T Consensus       401 D~~i~vW~  408 (410)
T 1vyh_C          401 DQTVKVWE  408 (410)
T ss_dssp             TSEEEEEC
T ss_pred             CCcEEEEe
Confidence            99877665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-46  Score=310.80  Aligned_cols=279  Identities=15%  Similarity=0.177  Sum_probs=242.8

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +....++.+|.+.|++++|+  +.+|++|+.||.|++||+.+++.+..+..| ..+|.+++|+|++     ++|++|+.|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~~~v~~~~~~~~~-----~~l~s~s~d   76 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-ETPVRAGKFIARK-----NWIIVGSDD   76 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGG-----TEEEEEETT
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-CCcEEEEEEeCCC-----CEEEEECCC
Confidence            34556778999999999999  889999999999999999999999999999 8999999999998     899999999


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE--EEcCCcceEEEEeC-CCCEE
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY--HKIGKEASLIKFDG-SGEKF  186 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~  186 (343)
                      ++|++||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||++++.....  ..+...+.+++|+| ++..+
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            9999999999999999999999999999999999999999999999999998754432  23567899999999 57888


Q ss_pred             EEE-eCCcEEEEEcccceeEEEec--CCcceEEeeec---CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEE
Q 019326          187 FMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPG---ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      +++ .|+.|++||+++......+.  +...+..+.+.   ++.+|++|+.|+.|++||+++++++..+. +|...|.+++
T Consensus       157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~  235 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV  235 (304)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEE
Confidence            888 89999999998877665554  55778888886   34699999999999999999999999999 9999999999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc--eeccccCCC
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS--FKRPQIGDS  330 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~~~~~~~~~  330 (343)
                      |+|++.         +|++++.||+|++||+++++......    .+...+.+++++|++.  +++.+..++
T Consensus       236 ~~p~~~---------~l~s~s~Dg~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          236 FHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLN----VGLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             ECSSSS---------EEEEEETTSCEEEEETTTCCEEEEEC----CSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             ECCCCC---------EEEEEcCCCeEEEEECCCCceeeecc----CCCccEEEEEECCCCCceEEEEecCCc
Confidence            999987         99999999999999999875332221    2345799999888765  567766655

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-47  Score=325.79  Aligned_cols=263  Identities=15%  Similarity=0.231  Sum_probs=241.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+.+            ......+.+|.++|++++|+  +++|++|+.|++|++||+.+++++..+.
T Consensus       122 ~l~s~s~Dg~i~vwd~~~------------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          122 VMVSASEDATIKVWDYET------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH  189 (410)
T ss_dssp             EEEEEESSSCEEEEETTT------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             EEEEEeCCCeEEEEECCC------------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence            489999999999999987            23456778999999999998  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| ...|.+++|+|++     ++|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+|++++.|+.|++||+
T Consensus       190 ~h-~~~V~~v~~~p~~-----~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~  263 (410)
T 1vyh_C          190 GH-DHNVSSVSIMPNG-----DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  263 (410)
T ss_dssp             CC-SSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CC-CCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            99 8999999999998     79999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEE-EcCCcceEEEEeCC--------------------CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEE
Q 019326          160 VRGRRSFYH-KIGKEASLIKFDGS--------------------GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILC  216 (343)
Q Consensus       160 ~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~  216 (343)
                      ++++..... .+...+.+++|+|+                    +.+++++ .|+.|++||+++++.+..+. |...|.+
T Consensus       264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~  343 (410)
T 1vyh_C          264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  343 (410)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence            998876554 45578999999996                    6688888 89999999999999988887 7888999


Q ss_pred             eeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          217 AAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       217 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      ++|++ +.+|++|+.||.|++||+.+++.+..+. +|...|++++|+|++.         +|++|+.||+|++|+++
T Consensus       344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~---------~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAP---------YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSS---------CEEEEETTSEEEEEC--
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcCCCC---------EEEEEeCCCcEEEEeCC
Confidence            99984 6799999999999999999999999998 9999999999999987         99999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-46  Score=310.92  Aligned_cols=286  Identities=17%  Similarity=0.154  Sum_probs=254.5

Q ss_pred             eEEeEEecCCCCCeEEEEec------CceEEEeeCCCeEEEEEcCCCee--eeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           32 LTQLFSYPAHLSPITTVAVS------GTAAASGGTDDTIHLYDLSTSSS--LGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      ......+++|.++|.+++|+      +.+|++|+.|++|++|++.+++.  ...+.+| ...|.+++|++++     .++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh-~~~v~~~~~~~~~-----~~l   95 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH-QLGVVSVDISHTL-----PIA   95 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECSSS-----SEE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccC-CCCEEEEEECCCC-----CEE
Confidence            34456677999999999996      45899999999999999987754  4567888 9999999999998     799


Q ss_pred             EEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCC
Q 019326          104 FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGS  182 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~  182 (343)
                      ++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....... ...+.+++|+|+
T Consensus        96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD  175 (321)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTT
T ss_pred             EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999999987765554 467899999999


Q ss_pred             CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEE
Q 019326          183 GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI  259 (343)
Q Consensus       183 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~  259 (343)
                      +++++++ .|+.|++||+++++.+..+. |..+|.+++|++ +.+|++|+.|+.|++||+++++....+. +|...|.++
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~  254 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNV  254 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEE
Confidence            9999999 89999999999999998887 788999999995 5799999999999999999999999998 999999999


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +|+|++.         +|++++.|++|++||++++.....    ...+...|.+++|++++.+++.+..|+.++.++.
T Consensus       255 ~~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~----~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          255 AFCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHT----FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EECTTSS---------EEEEEETTSCEEEEETTTTEEEEE----ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEE----EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999887         999999999999999998753221    1235567999999999999999999998887764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7e-46  Score=335.42  Aligned_cols=307  Identities=18%  Similarity=0.207  Sum_probs=254.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++||..+            .+....+.+|...|++++|+  +++|++|+.|++|++||+.+++.+..+.
T Consensus       162 ~l~s~s~D~~v~lwd~~~------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~  229 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPP------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  229 (611)
T ss_dssp             EEEEEETTSCEEEEETTT------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             EEEEEeCCCeEEEEECCC------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeec
Confidence            589999999999999765            45567788999999999999  8899999999999999999999888874


Q ss_pred             -------cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee----------------------------
Q 019326           80 -------HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT----------------------------  124 (343)
Q Consensus        80 -------~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------  124 (343)
                             +| ...|.+++|+|++     ++|++++.|++|++||+.+++++.                            
T Consensus       230 ~~~~~~~~h-~~~V~~v~~spdg-----~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          230 DDSLKNVAH-SGSVFGLTWSPDG-----TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             CTTSSSCSS-SSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             ccccccccc-CCCEEEEEECCCC-----CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence                   67 8999999999999     899999999999999998766543                            


Q ss_pred             ---------------eeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE---------------------
Q 019326          125 ---------------SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH---------------------  168 (343)
Q Consensus       125 ---------------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---------------------  168 (343)
                                     .+.+|...|.+++|+|++++|++++.|++|++||+.+++.....                     
T Consensus       304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s  383 (611)
T 1nr0_A          304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT  383 (611)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred             CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE
Confidence                           33468889999999999999999999999999998765432110                     


Q ss_pred             --------------------------------------------------------------EcCCcceEEEEeCCCCEE
Q 019326          169 --------------------------------------------------------------KIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       169 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~  186 (343)
                                                                                    .+...+.+++|+|+++++
T Consensus       384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~l  463 (611)
T 1nr0_A          384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV  463 (611)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEE
T ss_pred             EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEE
Confidence                                                                          012335679999999999


Q ss_pred             EEE-eCCcEEEEEccccee--EEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCC-CceeEE-ecccccccEEEEE
Q 019326          187 FMV-TEEKVGIHQAEDAKL--LCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNS-GKVAYC-IEDAHSARVKGIV  260 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~--~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~h~~~v~~~~  260 (343)
                      +++ .|+.|++||+.++..  .....|...|.+++|+ ++++|++++.|+.|++||+.+ ++.... ...+|...|.+++
T Consensus       464 asgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~  543 (611)
T 1nr0_A          464 AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  543 (611)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             EEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE
Confidence            999 899999999987653  3445589999999999 467999999999999999987 555443 2325999999999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      |+|++.         +|++++.|++|++||+.++.... ......+....|.+++|+|++. ++.+..|+.++.++.
T Consensus       544 fspdg~---------~lasgs~D~~v~lW~~~~~~~~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          544 WSPDNV---------RLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             ECTTSS---------EEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             ECCCCC---------EEEEEECCCcEEEEECCCccccc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence            999988         99999999999999998753211 0122222256799999999999 888999998887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6e-45  Score=306.38  Aligned_cols=260  Identities=18%  Similarity=0.245  Sum_probs=236.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC----eee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS----SSL   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~~~   75 (343)
                      .|++|+.||.|++||+..            ...+..+..|...|.+++|+  +++|++|+.|+.|++|++.+.    +..
T Consensus        69 ~l~s~s~Dg~v~iWd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~  136 (340)
T 1got_B           69 LLLSASQDGKLIIWDSYT------------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             EEEEEETTTEEEEEETTT------------CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEE
T ss_pred             EEEEEeCCCcEEEEECCC------------CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeE
Confidence            489999999999999876            34556677899999999999  899999999999999999875    355


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      ..+.+| ...|.++.|++++      .+++++.|++|++||+.+++++..+.+|.+.|.+++|+|+++++++++.|+.|+
T Consensus       137 ~~~~~h-~~~v~~~~~~~~~------~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          137 RELAGH-TGYLSCCRFLDDN------QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             EEEECC-SSCEEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEecCC-CccEEEEEECCCC------cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            677888 8999999999887      699999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC---cceEEeeecC-CCeEEEEe
Q 019326          156 MVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK---KRILCAAPGE-NGVLFTGG  229 (343)
Q Consensus       156 ~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~~-~~~l~~~~  229 (343)
                      +||+++++...... +...+.+++|+|++++++++ .|+.|++||+++++.+..+.+.   ..+.+++|++ +.+|++|+
T Consensus       210 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence            99999998776554 56789999999999999999 8999999999999888887754   4799999994 67999999


Q ss_pred             CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          230 EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       230 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      .||.|++||+.+++.+..+. +|..+|.+++|+|++.         +|++|+.||.|+|||
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~---------~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM---------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS---------CEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCC---------EEEEEcCCccEEecC
Confidence            99999999999999999998 9999999999999887         999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-44  Score=303.20  Aligned_cols=285  Identities=14%  Similarity=0.121  Sum_probs=249.5

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      .......+.+|.++|++++|+  +++|++|+.||.|++||+.+++.+..+..| ...|.+++|+|++     ++|++|+.
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~~~~s~~~-----~~l~s~~~  117 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSG-----NYVACGGL  117 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-SSCEEEEEECTTS-----SEEEEEET
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC-CccEEEEEECCCC-----CEEEEEeC
Confidence            355677889999999999998  889999999999999999999999999998 8999999999999     89999999


Q ss_pred             CCeEEEEECCCc----ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCC
Q 019326          109 DGFVSIFDADPF----VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSG  183 (343)
Q Consensus       109 dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~  183 (343)
                      |+.|++|++.+.    +....+.+|.+.|.++.|++++. +++++.|++|++||+++++...... +...+.+++|+|++
T Consensus       118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence            999999999764    35567788999999999998874 8999999999999999998776654 55789999999999


Q ss_pred             CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc-cccccEEEE
Q 019326          184 EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED-AHSARVKGI  259 (343)
Q Consensus       184 ~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~  259 (343)
                      ++++++ .|+.|++||+++++....+. |...|.+++|++ +++|++|+.||.|++||+++++.+..+.. .+...|.++
T Consensus       197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~  276 (340)
T 1got_B          197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence            999999 89999999999999988887 788999999994 67999999999999999999988877751 233579999


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      +|+|++.         +|++|+.||.|++||+.++.....    ...+...|.+++|+|++.+++.+..|+.++.+
T Consensus       277 ~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~----~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          277 SFSKSGR---------LLLAGYDDFNCNVWDALKADRAGV----LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EECTTSS---------EEEEEETTSEEEEEETTTCCEEEE----EECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EECCCCC---------EEEEECCCCeEEEEEcccCcEeeE----eecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            9999887         999999999999999987642211    12355689999999999999999999887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.9e-44  Score=324.03  Aligned_cols=285  Identities=12%  Similarity=0.132  Sum_probs=237.6

Q ss_pred             EEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           36 FSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      ..+.+|...|++++|+  +. .|++|+.|++|++||..++++...+.+| ...|.+++|+|++     ++|++|+.|++|
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg-----~~las~s~D~~i  214 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDG-----SLFASTGGDGTI  214 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-SSCEEEEEECTTS-----SEEEEEETTSCE
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-cCceEEEEECCCC-----CEEEEEECCCcE
Confidence            3467899999999999  33 6999999999999999999999999999 9999999999999     899999999999


Q ss_pred             EEEECCCcceeeeee-------eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-----------------
Q 019326          113 SIFDADPFVLLTSVK-------VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-----------------  168 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-----------------  168 (343)
                      ++||+.+++++..+.       +|.+.|.+++|+|++++|++++.|++|++||+++++.....                 
T Consensus       215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (611)
T 1nr0_A          215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  294 (611)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence            999999988888874       79999999999999999999999999999999887654332                 


Q ss_pred             ---------------------------EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe------------
Q 019326          169 ---------------------------KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL------------  208 (343)
Q Consensus       169 ---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~------------  208 (343)
                                                 .+...+.+++|+|++++++++ .|+.|++||+.+++....+            
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence                                       234568899999999999999 8999999998765443221            


Q ss_pred             -----------------------------------------------------------------------cCCcceEEe
Q 019326          209 -----------------------------------------------------------------------DGKKRILCA  217 (343)
Q Consensus       209 -----------------------------------------------------------------------~~~~~i~~~  217 (343)
                                                                                             .+...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                                                                   112345678


Q ss_pred             eec-CCCeEEEEeCCCcEEEEECCCCce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC-
Q 019326          218 APG-ENGVLFTGGEDRSITAWDTNSGKV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-  293 (343)
Q Consensus       218 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-  293 (343)
                      +|+ ++++|++|+.|+.|++||+.++..  +.. . +|...|++++|+|++.         +|++++.|++|++|++.+ 
T Consensus       455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~-~h~~~v~~v~fspdg~---------~las~s~d~~v~~w~~~~~  523 (611)
T 1nr0_A          455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I-VHPAEITSVAFSNNGA---------FLVATDQSRKVIPYSVANN  523 (611)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E-ECSSCEEEEEECTTSS---------EEEEEETTSCEEEEEGGGT
T ss_pred             EEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c-CCCCceEEEEECCCCC---------EEEEEcCCCCEEEEEcCCC
Confidence            887 467999999999999999987653  233 4 7999999999999988         999999999999999987 


Q ss_pred             ccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          294 AIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       294 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      +..... .. ...+...|.+++|+|++++++.+..|+.++.++...
T Consensus       524 ~~~~~~-~~-~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          524 FELAHT-NS-WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             TEESCC-CC-CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             Cceeee-ee-eeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            322111 01 112566799999999999999999999888776543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.7e-44  Score=296.89  Aligned_cols=290  Identities=13%  Similarity=0.116  Sum_probs=246.7

Q ss_pred             eeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC-----CeeeeEeccCCCCCeEEEEEeCCCCCCCCce
Q 019326           31 TLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST-----SSSLGAIHHHESSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~  102 (343)
                      .+....++.+|.++|++++|+   +++|++|+.|++|++|++..     +.++..+.+| ...|.+++|+|++     ++
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg-----~~   79 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADG-----AY   79 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTS-----SE
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCC-----CE
Confidence            356677889999999999998   47999999999999999864     3456788899 9999999999999     89


Q ss_pred             EEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCC
Q 019326          103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGS  182 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      |++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++.........+...+..+.+.|.
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence            99999999999999999999999999999999999999999999999999999999976555445556678999999985


Q ss_pred             C------CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccc
Q 019326          183 G------EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS  253 (343)
Q Consensus       183 ~------~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~  253 (343)
                      .      ..++++ .|+.|++||+++.+....+. |...|.++++++ +.+|++|+.||.|++||+.+++.+..+.  +.
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~  237 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQ  237 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CC
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CC
Confidence            4      478888 89999999999998888776 889999999995 6799999999999999999999998887  45


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC----CcccccccccceeEEEcCCCCceeccccCC
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP----LPLAEAKTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                      ..|.+++|+|++.         +|++++.+ .+++|+++.......    ...........+.+++|+|++++++.+..|
T Consensus       238 ~~v~~~~~sp~~~---------~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          238 DEVFSLAFSPNRY---------WLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             SCEEEEEECSSSS---------EEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEEcCCCC---------EEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            7899999999987         88877754 599999987532111    111112334568999999999999999999


Q ss_pred             CCCCCcccc
Q 019326          330 SAPKGEEKA  338 (343)
Q Consensus       330 ~~~~~~~~~  338 (343)
                      +.++.++..
T Consensus       308 g~i~vWd~~  316 (319)
T 3frx_A          308 NVIRVWQVM  316 (319)
T ss_dssp             SCEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            988877653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.1e-45  Score=305.77  Aligned_cols=276  Identities=13%  Similarity=0.082  Sum_probs=221.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEe---
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAI---   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---   78 (343)
                      +++++.|+++++||................ .......|...|++++|+ .+.|++|+.||.|++||+.+++.+..+   
T Consensus        44 ~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~  122 (344)
T 4gqb_B           44 LLLGASSLSGRCWAGSLWLFKDPCAAPNEG-FCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC  122 (344)
T ss_dssp             EEEEEECCSSSCCCEEEEEESSGGGTTCGG-GCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEE
T ss_pred             EEEEEeCCceEEeeceeeeeccccccCCcc-eeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecc
Confidence            455566888888875321000000000000 111122467889999999 778999999999999999998765443   


Q ss_pred             -ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEE
Q 019326           79 -HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAM  156 (343)
Q Consensus        79 -~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~  156 (343)
                       .+| ...|++++|+|++     ++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++
T Consensus       123 ~~~H-~~~V~~v~~spdg-----~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~i  196 (344)
T 4gqb_B          123 KYEH-DDIVSTVSVLSSG-----TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL  196 (344)
T ss_dssp             EECC-SSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             ccCC-CCCEEEEEECCCC-----CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccc
Confidence             467 8999999999999     899999999999999999999999999999999999999988 57899999999999


Q ss_pred             EEccCCceeEEEE---cCCcceEEEEeCC-CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-C-CeEEEE
Q 019326          157 VNLVRGRRSFYHK---IGKEASLIKFDGS-GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-N-GVLFTG  228 (343)
Q Consensus       157 wd~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~-~~l~~~  228 (343)
                      ||+++++......   ....+.+++|+|+ +++++++ .|+.|++||+++++.+..+. |...|.+++|++ + .+|++|
T Consensus       197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             EETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             ccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence            9999998766543   2356889999995 4567777 89999999999999998887 888999999985 3 579999


Q ss_pred             eCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          229 GEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +.|++|++||+++++.+ .+. +|...|++++|+|++..        +|+++|.||+|++|++.+..
T Consensus       277 s~D~~i~vwd~~~~~~~-~~~-~H~~~V~~v~~sp~~~~--------llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          277 SEDCSLAVLDSSLSELF-RSQ-AHRDFVRDATWSPLNHS--------LLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ETTSCEEEECTTCCEEE-EEC-CCSSCEEEEEECSSSTT--------EEEEEETTSCEEEEECCC--
T ss_pred             eCCCeEEEEECCCCcEE-EEc-CCCCCEEEEEEeCCCCe--------EEEEEcCCCeEEEEECCCCC
Confidence            99999999999988755 566 89999999999998752        68899999999999998753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-43  Score=294.84  Aligned_cols=270  Identities=16%  Similarity=0.205  Sum_probs=235.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++|++..       .......++..+.+|...|.+++|+  +.+|++|+.|++|++||+.+++.+..+.
T Consensus        32 ~l~s~s~D~~v~~W~~~~-------~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~  104 (319)
T 3frx_A           32 LLLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV  104 (319)
T ss_dssp             EEEEEETTSEEEEEEEEE-------ETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCccEEEecCCC-------CCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc
Confidence            489999999999999976       2333345678889999999999998  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC------CCEEEEEeCCCe
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS------GKLALTVGRDDC  153 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~~~d~~  153 (343)
                      +| ...|.+++|+|++     .+|++|+.|++|++||++. +++..+.+|...|.+++|.|.      +..+++++.|+.
T Consensus       105 ~h-~~~v~~~~~~~~~-----~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A          105 GH-KSDVMSVDIDKKA-----SMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             CC-SSCEEEEEECTTS-----CEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             cC-CCcEEEEEEcCCC-----CEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            99 9999999999998     8999999999999999975 678888899999999999985      448999999999


Q ss_pred             EEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCC
Q 019326          154 LAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       154 i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      |++||+++.+..... .+...+.+++|+|++++++++ .|+.|++||+.+++.+..+.+..++.+++|++++.+++++.+
T Consensus       178 i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             EEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC
Confidence            999999988765544 456789999999999999999 899999999999999999998899999999965544444445


Q ss_pred             CcEEEEECCCCceeEEec-------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          232 RSITAWDTNSGKVAYCIE-------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +.+++|++..+..+..+.       ..|...+.+++|+|+++         +|++|+.||.|++||+.+.
T Consensus       258 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~---------~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ---------TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS---------EEEEEETTSCEEEEEEEEC
T ss_pred             CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC---------EEEEeecCceEEEEEEeec
Confidence            669999999877766654       13567899999999988         9999999999999999763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-43  Score=293.28  Aligned_cols=265  Identities=13%  Similarity=0.147  Sum_probs=232.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+.+            ...+..+.+|..+|.+++|+  +++|++|+.|+.|++||+.+++.+..+.
T Consensus        27 ~l~s~~~dg~v~lWd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~   94 (304)
T 2ynn_A           27 WVLTTLYSGRVELWNYET------------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (304)
T ss_dssp             EEEEEETTSEEEEEETTT------------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCC------------CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            489999999999999987            34567778999999999998  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~w  157 (343)
                      +| ...|.+++|+|++     ++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++++.|++|++|
T Consensus        95 ~h-~~~v~~~~~~~~~-----~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw  168 (304)
T 2ynn_A           95 AH-PDYIRSIAVHPTK-----PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (304)
T ss_dssp             CC-SSCEEEEEECSSS-----SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred             CC-CCcEEEEEEcCCC-----CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            99 9999999999998     79999999999999999876 45677889999999999999 57899999999999999


Q ss_pred             EccCCceeEEEEc--CCcceEEEEeC--CCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeC
Q 019326          158 NLVRGRRSFYHKI--GKEASLIKFDG--SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGE  230 (343)
Q Consensus       158 d~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~  230 (343)
                      |++++........  ...+..+.+.|  ++.+++++ .|+.|++||+++++++..+. |...|.+++|++ +.+|++|+.
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  248 (304)
T 2ynn_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (304)
T ss_dssp             ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence            9988776554443  35678888876  67789988 89999999999999998887 888999999995 579999999


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ||.|++||..+++.+..+. .|...+.+++++|++...       ++++|+.| .+.+|++.+
T Consensus       249 Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          249 DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKN-------YIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             TSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGG-------CEEEEETT-EEEEEECC-
T ss_pred             CCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCce-------EEEEecCC-ceEEEEecc
Confidence            9999999999999999999 899999999999876421       47777655 578888765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.8e-43  Score=296.79  Aligned_cols=286  Identities=13%  Similarity=0.109  Sum_probs=248.2

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      .......+.+|.++|++++|+  +.+|++|+.||+|++||..+++....+..| ...|.+++|+|++     .+|++|+.
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g-----~~lasg~~  126 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSG-----CAIACGGL  126 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTS-----SEEEEEST
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCC-----CEEEEeeC
Confidence            345677889999999999999  889999999999999999999998888888 8899999999999     89999999


Q ss_pred             CCeEEEEECCCc------ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeC
Q 019326          109 DGFVSIFDADPF------VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDG  181 (343)
Q Consensus       109 dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~  181 (343)
                      |+.+++|++...      .....+..|...|.+++|+|++..|++++.|++|++||+++++.+..+. +...+.+++++|
T Consensus       127 d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          127 DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            999999998543      3456778899999999999999999999999999999999998876655 457788999987


Q ss_pred             --CCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc-ccccc
Q 019326          182 --SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED-AHSAR  255 (343)
Q Consensus       182 --~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~h~~~  255 (343)
                        +++.++++ .|+.+++||+++++.+..+. |...|.+++|++ +++|++|+.|++|++||+++++.+..+.. .+...
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~  286 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG  286 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence              46789988 89999999999999988887 788999999984 67999999999999999999887776651 23457


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      +.+++|+|++.         +|++++.|+.|++||+.++....    ....+...|.+++|+|++.+++.+..|+.++.+
T Consensus       287 ~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~----~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          287 ASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVS----ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEE----EECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             eeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEE----EEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            89999999887         99999999999999998764221    112456689999999999999999999876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.5e-43  Score=296.32  Aligned_cols=261  Identities=18%  Similarity=0.252  Sum_probs=233.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC------e
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS------S   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~------~   73 (343)
                      .|++|+.||.|++||..+            ......+..|...|.+++|+  +..|++|+.|+.+++|++...      .
T Consensus        78 ~l~s~s~Dg~v~vWd~~~------------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~  145 (354)
T 2pbi_B           78 RIVSSSQDGKVIVWDSFT------------TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA  145 (354)
T ss_dssp             EEEEEETTSEEEEEETTT------------CCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred             EEEEEeCCCeEEEEECCC------------CCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence            589999999999999876            23445666789999999999  899999999999999998643      3


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec--CCCEEEEEeCC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH--SGKLALTVGRD  151 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d  151 (343)
                      ....+..| ...|.+++|+|++     ..|++++.|++|++||+++++++..+.+|...|.+++|+|  ++++|++++.|
T Consensus       146 ~~~~~~~h-~~~v~~~~~~~~~-----~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          146 KKKSVAMH-TNYLSACSFTNSD-----MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             GCEEEEEC-SSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred             cceeeecc-CCcEEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence            45566778 8999999999998     7999999999999999999999999999999999999987  46899999999


Q ss_pred             CeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC---CcceEEeeec-CCCeE
Q 019326          152 DCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG---KKRILCAAPG-ENGVL  225 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~---~~~i~~~~~~-~~~~l  225 (343)
                      |.|++||+++++.+.... +...+.+++|+|++..++++ .|+.+++||++..+.+..+..   ...+.+++|+ ++.+|
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            999999999998776654 45789999999999999999 899999999999888777663   3468899998 56799


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ++|+.|+.|++||+.+++.+..+. +|...|++++|+|++.         +|++|+.||+|++|+
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~---------~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGT---------AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSS---------CEEEEETTSEEEEEC
T ss_pred             EEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCC---------EEEEEcCCCCEEecC
Confidence            999999999999999999999998 9999999999999987         999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5e-43  Score=291.35  Aligned_cols=263  Identities=20%  Similarity=0.262  Sum_probs=234.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++|+...            ......+.+|...|.+++|+  +++|++|+.|+.|++||+.+++.+..+.
T Consensus        37 ~l~s~~~dg~i~iw~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  104 (312)
T 4ery_A           37 WLASSSADKLIKIWGAYD------------GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK  104 (312)
T ss_dssp             EEEEEETTSCEEEEETTT------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeeCCCeEEEEeCCC------------cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc
Confidence            489999999999999876            23455677999999999999  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...|.+++|+|++     ++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus       105 ~~-~~~v~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A          105 GH-SNYVFCCNFNPQS-----NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             CC-SSCEEEEEECSSS-----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CC-CCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            99 8999999999998     89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEEc--CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEE--eee--cCCCeEEEEeCC
Q 019326          160 VRGRRSFYHKI--GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILC--AAP--GENGVLFTGGED  231 (343)
Q Consensus       160 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~--~~~--~~~~~l~~~~~d  231 (343)
                      ++++.+.....  ...+..++|+|++++++++ .++.|++||+++++.+..+. |.....+  ..+  .++.++++|+.|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred             CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence            99887665533  3568889999999999999 89999999999999888886 3332221  222  356799999999


Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc--CCCcEEEEecc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS--SDGVICVWDVR  292 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~  292 (343)
                      |.|++||+.+++.+..+. +|...|.+++|+|++.         ++++++  .|+.|++|+.+
T Consensus       259 g~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~---------~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          259 NLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTEN---------IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSS---------EEEEEECTTTCCEEEEECC
T ss_pred             CEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCC---------ceEEEEccCCccEEEecCC
Confidence            999999999999999999 9999999999999987         899886  69999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-44  Score=309.58  Aligned_cols=292  Identities=16%  Similarity=0.137  Sum_probs=249.1

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ......+.+|.++|++++|+  +++|++|+.||+|++||+.+++....+..| ...|.+++|+|++     ++|++|+.|
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h-~~~v~~~~~s~~g-----~~las~~~d  129 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-CPWVMECAFAPNG-----QSVACGGLD  129 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECC-CTTCCCCEECTTS-----SEEEECCSS
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecC-CCCEEEEEECCCC-----CEEEEeeCC
Confidence            56678899999999999999  889999999999999999999999999999 8999999999999     899999999


Q ss_pred             CeEEEEECCCc-------ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE------cCCcce
Q 019326          110 GFVSIFDADPF-------VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK------IGKEAS  175 (343)
Q Consensus       110 g~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~  175 (343)
                      +.+++||+.+.       .....+.+|.+.|.++.|.|++ ..|++++.|++|++||+++++.+....      +...+.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            99999998642       2456678899999999999974 679999999999999999998776552      346688


Q ss_pred             EEEEeC-CCCEEEEE-eCCcEEEEEcc-cceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc
Q 019326          176 LIKFDG-SGEKFFMV-TEEKVGIHQAE-DAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED  250 (343)
Q Consensus       176 ~~~~~~-~~~~~~~~-~~~~i~~~d~~-~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  250 (343)
                      ++++++ ++..++++ .|+.|++||++ ..+.+..+. |...|.+++|++ +.+|++|+.||+|++||+++++.+..+. 
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~-  288 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN-  288 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC-
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec-
Confidence            899977 78888888 89999999998 446666665 889999999995 5799999999999999999999888876 


Q ss_pred             ccc-------ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCcee
Q 019326          251 AHS-------ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       251 ~h~-------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~  323 (343)
                      .+.       ..|++++|+|++.         +|++|+.||.|++||+..+............+...|.+++|+|++.++
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             ccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            332       3489999999988         999999999999999987643322211123456789999999999999


Q ss_pred             ccccCCCCCCCccccC
Q 019326          324 RPQIGDSAPKGEEKAS  339 (343)
Q Consensus       324 ~~~~~~~~~~~~~~~~  339 (343)
                      +.+..|+.++.++...
T Consensus       360 ~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEECTTSCEEEEECCS
T ss_pred             EEeeCCCCEEEEecCC
Confidence            9999999988776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-43  Score=295.88  Aligned_cols=291  Identities=14%  Similarity=0.156  Sum_probs=236.9

Q ss_pred             eeeEEeEEecCCCCCeEEEEe-----c---CceEEEeeCCCeEEEEEcCCC-------eeeeEeccCCCCCeEEEEEeCC
Q 019326           30 LTLTQLFSYPAHLSPITTVAV-----S---GTAAASGGTDDTIHLYDLSTS-------SSLGAIHHHESSSVTSLAFYTP   94 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~-----~---~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~~~   94 (343)
                      ........+++|.++|++++|     +   +.+|++|+.|++|++||+.+.       .....+.+| ...|.+++|+|+
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~~~~   87 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH-NHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC-SSCEEEEEECSS
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC-CCceEEEEECCC
Confidence            345667788999999999999     3   779999999999999999753       456678888 899999999999


Q ss_pred             CCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE---EcC
Q 019326           95 QNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH---KIG  171 (343)
Q Consensus        95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~  171 (343)
                      +     .++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.........   .+.
T Consensus        88 ~-----~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  162 (343)
T 2xzm_R           88 N-----CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS  162 (343)
T ss_dssp             T-----TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS
T ss_pred             C-----CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC
Confidence            8     79999999999999999999999999999999999999999999999999999999999744332222   244


Q ss_pred             CcceEEEEeCCC----------CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEE
Q 019326          172 KEASLIKFDGSG----------EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWD  238 (343)
Q Consensus       172 ~~~~~~~~~~~~----------~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d  238 (343)
                      ..+.+++|+|++          .+++++ .|+.|++||. ..+....+. |...|.+++|++ +++|++|+.||.|++||
T Consensus       163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            678999999987          678888 8999999994 445555554 889999999994 67999999999999999


Q ss_pred             CC-CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc---------ccccc
Q 019326          239 TN-SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA---------EAKTN  308 (343)
Q Consensus       239 ~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~~  308 (343)
                      +. .......+.  +...|.+++|+|++.         +++ ++.|+.|++||+.+........+.         ...+.
T Consensus       242 ~~~~~~~~~~~~--~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          242 ILNLTYPQREFD--AGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             SSCCSSCSEEEE--CSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             CCCCcccceeec--CCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            94 444555554  566799999999875         655 556889999999876422200000         01244


Q ss_pred             cceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          309 SRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       309 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      ..|.+++|+|++.+++.+..|+.++.++.+.
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            5799999999999999999999888776544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-43  Score=295.75  Aligned_cols=291  Identities=17%  Similarity=0.168  Sum_probs=228.7

Q ss_pred             eEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCC--eeeeEe-cc-CCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           32 LTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTS--SSLGAI-HH-HESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      .+.+..+.+|.++|.+++|++++|++|+.|+.|++||+.++  +....+ .. | ...|.+++|+|++     ++|++|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~-----~~las~s   77 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAH-KKAIRSVAWRPHT-----SLLAAGS   77 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCC-CSCEEEEEECTTS-----SEEEEEE
T ss_pred             cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCc-cCCEEEEEECCCC-----CEEEEEe
Confidence            45667788999999999999779999999999999999875  445555 34 6 8999999999998     8999999


Q ss_pred             CCCeEEEEECCC-------cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC----ceeEE-EEcCCcce
Q 019326          108 ADGFVSIFDADP-------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG----RRSFY-HKIGKEAS  175 (343)
Q Consensus       108 ~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~-~~~~~~~~  175 (343)
                      .|++|++||+..       .+++..+.+|...|.+++|+|++++|++++.|++|++||++..    +.+.. ..+...+.
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            999999999842       3567778899999999999999999999999999999999543    22222 23557899


Q ss_pred             EEEEeCCCCEEEEE-eCCcEEEEEcccc--eeEEEec-CCcceEEeeecCC---CeEEEEeCCCcEEEEECCCC------
Q 019326          176 LIKFDGSGEKFFMV-TEEKVGIHQAEDA--KLLCELD-GKKRILCAAPGEN---GVLFTGGEDRSITAWDTNSG------  242 (343)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~i~~~d~~~~--~~~~~~~-~~~~i~~~~~~~~---~~l~~~~~dg~i~i~d~~~~------  242 (343)
                      +++|+|++.+++++ .|+.|++||..++  +++..+. |...|.++.|++.   .+|++|+.|++|++||+..+      
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            99999999999999 8999999999876  5666666 8889999999853   57999999999999998754      


Q ss_pred             --ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC--
Q 019326          243 --KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS--  318 (343)
Q Consensus       243 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~--  318 (343)
                        .....+...|...|.+++|++.+          +|++++.||.|++||..++...........+....|.+++|+|  
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~  307 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN  307 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred             eeEEeeecccccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCC
Confidence              34455553499999999998554          7999999999999999865211110111112222799999999  


Q ss_pred             CCceeccccCCCCCCCcccc
Q 019326          319 TKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~  338 (343)
                      ++.+++.+..|+.++.++..
T Consensus       308 ~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          308 GKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             --CCEEEEETTSEEEEEEC-
T ss_pred             CceEEEEecCCCcEEEEEec
Confidence            78999999999988776643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-43  Score=292.12  Aligned_cols=267  Identities=19%  Similarity=0.224  Sum_probs=214.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe-cC-CCCCeEEEEec--CceEEEeeCCCeEEEEEcCC------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY-PA-HLSPITTVAVS--GTAAASGGTDDTIHLYDLST------   71 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~------   71 (343)
                      .|++|+.|+.|++|++...       .   ......+ .+ |..+|.+++|+  +++|++|+.|+.|++||+..      
T Consensus        26 ~las~~~D~~i~lw~~~~~-------~---~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~   95 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD-------D---FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF   95 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS-------C---CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred             EEEEEcCCCEEEEEEecCC-------C---eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence            4899999999999999751       1   1233334 34 99999999998  88999999999999999853      


Q ss_pred             -CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC----cceeeeeeeccccEEEEEEecCCCEEE
Q 019326           72 -SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP----FVLLTSVKVHKKGVNDLAVHHSGKLAL  146 (343)
Q Consensus        72 -~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~  146 (343)
                       .+.+..+.+| ...|.+++|+|++     ++|++|+.|++|++||++.    .+++..+.+|...|.+++|+|++.+|+
T Consensus        96 ~~~~~~~~~~h-~~~V~~v~~sp~g-----~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  169 (330)
T 2hes_X           96 EMDLLAIIEGH-ENEVKGVAWSNDG-----YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA  169 (330)
T ss_dssp             CCEEEEEEC-----CEEEEEECTTS-----CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred             cceeEEEEcCC-CCcEEEEEECCCC-----CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEE
Confidence             3566778889 9999999999998     8999999999999999943    356778889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCc--eeEEE-EcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEcccc--------eeEEEec--C
Q 019326          147 TVGRDDCLAMVNLVRGR--RSFYH-KIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDA--------KLLCELD--G  210 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~--~~~~~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~--------~~~~~~~--~  210 (343)
                      +++.|++|++||..++.  .+... .+...+.+++|+|+  +..++++ .|+.|++||++.+        .....+.  |
T Consensus       170 s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h  249 (330)
T 2hes_X          170 SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH  249 (330)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCC
T ss_pred             EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccc
Confidence            99999999999998763  33333 35578999999998  6788888 8999999999865        3344443  7


Q ss_pred             CcceEEeeecCCCeEEEEeCCCcEEEEECCCCc--eeEEecccccc-cEEEEEEEe--cCCCCCCCCCCeEEEEEcCCCc
Q 019326          211 KKRILCAAPGENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAHSA-RVKGIVVLT--KNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       211 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h~~-~v~~~~~~~--~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                      ...|.+++|+++.+|++++.||.|++||..+++  .......+|.. .|.+++|+|  ++.         +|++|+.||+
T Consensus       250 ~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~---------~las~s~Dg~  320 (330)
T 2hes_X          250 KRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT---------ILATGGDDGI  320 (330)
T ss_dssp             SSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C---------CEEEEETTSE
T ss_pred             ccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce---------EEEEecCCCc
Confidence            789999999988899999999999999998774  34343237887 899999998  444         8999999999


Q ss_pred             EEEEeccC
Q 019326          286 ICVWDVRM  293 (343)
Q Consensus       286 i~vwd~~~  293 (343)
                      |++||++.
T Consensus       321 v~~W~~~~  328 (330)
T 2hes_X          321 VNFWSLEK  328 (330)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEecc
Confidence            99999875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8e-44  Score=298.99  Aligned_cols=277  Identities=15%  Similarity=0.114  Sum_probs=225.5

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-----------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-----------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      .|...|.+++|+  |.+|++++ |+++++||....           ........+ ...|.+++|+|++      .|++|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~------~l~~~   99 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT-EAGVADLTWVGER------GILVA   99 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE-SSCEEEEEEETTT------EEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeecc-CCCEEEEEEeCCC------eEEEE
Confidence            577889999999  77887776 778888873211           111112234 5789999999987      78999


Q ss_pred             eCCCeEEEEECCCcceeeee----eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeC
Q 019326          107 SADGFVSIFDADPFVLLTSV----KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDG  181 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~  181 (343)
                      +.||+|++||+.+++.+..+    .+|.+.|.+++|+|++++|++++.|++|++||+++++.+..+. +...|.+++|+|
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            99999999999988765443    4799999999999999999999999999999999998877665 568899999999


Q ss_pred             CCC-EEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccc
Q 019326          182 SGE-KFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSA  254 (343)
Q Consensus       182 ~~~-~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~  254 (343)
                      ++. .++++ .|+.|++||+++++....+.   +...+.+++|++  ++++++|+.||.|++||+++++++..+. +|..
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~  258 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQ  258 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSS
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCC
Confidence            985 56777 89999999999999888775   455688999984  4688999999999999999999999999 9999


Q ss_pred             cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc-eeccccCCCCCC
Q 019326          255 RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS-FKRPQIGDSAPK  333 (343)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~~~~~~~~~~~~  333 (343)
                      .|++++|+|++..        +|++|+.|++|+|||+++++.     +....+...|++++|+|++. +++.+..|+.++
T Consensus       259 ~v~~v~fsp~g~~--------~lasgs~D~~i~vwd~~~~~~-----~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~  325 (344)
T 4gqb_B          259 CVTGLVFSPHSVP--------FLASLSEDCSLAVLDSSLSEL-----FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVV  325 (344)
T ss_dssp             CEEEEEECSSSSC--------CEEEEETTSCEEEECTTCCEE-----EEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             CEEEEEEccCCCe--------EEEEEeCCCeEEEEECCCCcE-----EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence            9999999998641        799999999999999988642     22234567899999999986 566788899887


Q ss_pred             Ccccc
Q 019326          334 GEEKA  338 (343)
Q Consensus       334 ~~~~~  338 (343)
                      .++.+
T Consensus       326 ~w~v~  330 (344)
T 4gqb_B          326 HHVVP  330 (344)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            66543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.9e-44  Score=303.88  Aligned_cols=280  Identities=15%  Similarity=0.137  Sum_probs=228.9

Q ss_pred             cCCCCCeEEEEec--CceEEEeeC------CCeEEEEEcCCCeeee----EeccCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           39 PAHLSPITTVAVS--GTAAASGGT------DDTIHLYDLSTSSSLG----AIHHHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~------dg~i~iwd~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      .+|...|++++|+  |.+|++|+.      |+.|++|+..++....    ....| ...|.+++|+|++      .++++
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~------~~l~~  111 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEK------GILVA  111 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTT------EEEEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCC------CEEEE
Confidence            4799999999999  899999997      7889999988765433    33456 7889999999987      67788


Q ss_pred             eCCCeEEEEECCCcceee----eeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeC
Q 019326          107 SADGFVSIFDADPFVLLT----SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDG  181 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~  181 (343)
                      +.||+|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+|
T Consensus       112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            899999999998776543    234789999999999999999999999999999999998776655 457899999999


Q ss_pred             CCC-EEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccc
Q 019326          182 SGE-KFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSA  254 (343)
Q Consensus       182 ~~~-~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~  254 (343)
                      ++. .++++ .|+.|++||+++++....+.   +...+.+++|++  +.+|++|+.|+.|++||+++++.+..+. +|..
T Consensus       192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~  270 (357)
T 4g56_B          192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQ  270 (357)
T ss_dssp             TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSS
T ss_pred             CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccce
Confidence            875 56666 89999999999988776654   567799999984  4588999999999999999999999999 9999


Q ss_pred             cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC-CCceeccccCCCCCC
Q 019326          255 RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS-TKSFKRPQIGDSAPK  333 (343)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~~~~~~~~~~  333 (343)
                      .|++++|+|++.        ++|++++.||+|+|||+++++.     +....+...|++++|+| ++.+++.+..|+.++
T Consensus       271 ~v~~l~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~-----~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          271 NITGLAYSYHSS--------PFLASISEDCTVAVLDADFSEV-----FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             CEEEEEECSSSS--------CCEEEEETTSCEEEECTTSCEE-----EEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             eEEEEEEcCCCC--------CEEEEEeCCCEEEEEECCCCcE-----eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            999999998864        1799999999999999998752     23345677899999998 789999999999888


Q ss_pred             CccccC
Q 019326          334 GEEKAS  339 (343)
Q Consensus       334 ~~~~~~  339 (343)
                      .++.+.
T Consensus       338 iW~~~~  343 (357)
T 4g56_B          338 HHHLPS  343 (357)
T ss_dssp             EEECC-
T ss_pred             EEECCC
Confidence            776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-42  Score=289.55  Aligned_cols=286  Identities=17%  Similarity=0.201  Sum_probs=246.8

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ......+.+|..+|++++|+  +++|++|+.||.|++|++.+++....+..| ...|.+++|+|++     ++|++++.|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~-----~~l~s~~~d   86 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDS-----NLLVSASDD   86 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS-----SEEEEEETT
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEcCCC-----CEEEEECCC
Confidence            45667888999999999999  889999999999999999999999999999 8999999999998     899999999


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEE
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  188 (343)
                      +.|++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||+++++...... +...+.+++|+|+++++++
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999988776654 4578999999999999999


Q ss_pred             E-eCCcEEEEEcccceeEEEec--CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEE--EEE
Q 019326          189 V-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI--VVL  262 (343)
Q Consensus       189 ~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~--~~~  262 (343)
                      + .|+.|++||+++++.+..+.  +..++.+++|++ +++|++++.||.|++||+++++.+..+. +|...+..+  .++
T Consensus       167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  245 (312)
T 4ery_A          167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFS  245 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEE
T ss_pred             EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEE
Confidence            9 89999999999998887764  556799999984 6799999999999999999999999888 776654333  333


Q ss_pred             -ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc--CCCCCCCccc
Q 019326          263 -TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI--GDSAPKGEEK  337 (343)
Q Consensus       263 -~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~--~~~~~~~~~~  337 (343)
                       +++.         +|++|+.||.|++||++++......    ..+...|.+++++|++.+++.+.  .|+.++.++.
T Consensus       246 ~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          246 VTGGK---------WIVSGSEDNLVYIWNLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CSSSC---------EEEECCTTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             eCCCc---------EEEEECCCCEEEEEECCCchhhhhh----hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence             3333         9999999999999999876422111    13456799999999999998875  5777665543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-42  Score=293.20  Aligned_cols=272  Identities=19%  Similarity=0.161  Sum_probs=225.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++||+...+.     ......+...+.+|..+|++++|+  +.++++|+.|++|++||+.+++.+..+.
T Consensus        41 ~l~sgs~D~~v~iWd~~~~~~-----~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  115 (343)
T 2xzm_R           41 VLISGSRDKTVMIWKLYEEEQ-----NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV  115 (343)
T ss_dssp             EEEEEETTSCEEEEEECSSCC-----SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCcCCc-----ccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            489999999999999975211     112235567788999999999998  7899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee---eccccEEEEEEecCC----------CEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK---VHKKGVNDLAVHHSG----------KLAL  146 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~----------~~l~  146 (343)
                      +| ...|.+++|+|++     ++|++++.|++|++||+... ......   .|...|.+++|+|++          .+|+
T Consensus       116 ~h-~~~v~~v~~sp~~-----~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~  188 (343)
T 2xzm_R          116 GH-QSEVYSVAFSPDN-----RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA  188 (343)
T ss_dssp             CC-CSCEEEEEECSST-----TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred             CC-CCcEEEEEECCCC-----CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence            99 9999999999999     89999999999999999743 333332   688899999999986          7899


Q ss_pred             EEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcc-cceeEEEecCCcceEEeeecCCCe
Q 019326          147 TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAE-DAKLLCELDGKKRILCAAPGENGV  224 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~i~~~~~~~~~~  224 (343)
                      +++.|+.|++||...........+...+.+++|+|++++|+++ .|+.|++||+. .......+.+...|.+++|+++..
T Consensus       189 s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~  268 (343)
T 2xzm_R          189 SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ  268 (343)
T ss_dssp             EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred             EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence            9999999999995433233334566789999999999999999 89999999994 445556666777899999997666


Q ss_pred             EEEEeCCCcEEEEECCCCceeE--Eec----------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          225 LFTGGEDRSITAWDTNSGKVAY--CIE----------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~--~~~----------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +++++.|+.|++||+.+++...  .+.          .+|...|.+++|+|++.         +|++|+.||.|++|+++
T Consensus       269 ~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---------~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          269 WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK---------KLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC---------CEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC---------eEEEecCCceEEEEEEE
Confidence            6667778899999998776433  332          15778899999999987         99999999999999998


Q ss_pred             Cc
Q 019326          293 MA  294 (343)
Q Consensus       293 ~~  294 (343)
                      ++
T Consensus       340 ~g  341 (343)
T 2xzm_R          340 TS  341 (343)
T ss_dssp             EE
T ss_pred             cc
Confidence            75

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-42  Score=290.60  Aligned_cols=273  Identities=21%  Similarity=0.246  Sum_probs=223.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC--eeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS--SSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~   77 (343)
                      .|++|+.|+.|++||+..       +..  ........+|...|++++|+  +++|++|+.|+.|++|++.++  +.+..
T Consensus        30 ~las~~~D~~i~iw~~~~-------~~~--~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           30 LLASCGGDRRIRIWGTEG-------DSW--ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             CEEEEETTSCEEEEEEET-------TEE--EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred             EEEEEcCCCeEEEEEcCC-------Ccc--eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence            489999999999999986       211  11222336899999999998  889999999999999999876  45778


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc---ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF---VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      +.+| ...|.+++|+|++     ++|++|+.|++|++||+++.   +++..+.+|...|.+++|+|++++|++++.|+.|
T Consensus       101 ~~~h-~~~v~~v~~sp~~-----~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i  174 (345)
T 3fm0_A          101 LEGH-ENEVKSVAWAPSG-----NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV  174 (345)
T ss_dssp             ECCC-SSCEEEEEECTTS-----SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCE
T ss_pred             ccCC-CCCceEEEEeCCC-----CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcE
Confidence            8889 9999999999998     89999999999999999765   3466778899999999999999999999999999


Q ss_pred             EEEEccCCceeE---EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc---------------eeEEEec--CCcc
Q 019326          155 AMVNLVRGRRSF---YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA---------------KLLCELD--GKKR  213 (343)
Q Consensus       155 ~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~---------------~~~~~~~--~~~~  213 (343)
                      ++||.++++...   ...+...+.+++|+|++++|+++ .|+.|++|+....               +++..+.  |...
T Consensus       175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  254 (345)
T 3fm0_A          175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT  254 (345)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred             EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence            999998876432   22345789999999999999999 8999999997432               2233333  6788


Q ss_pred             eEEeeec-CCCeEEEEeCCCcEEEEECCCCc--------eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC
Q 019326          214 ILCAAPG-ENGVLFTGGEDRSITAWDTNSGK--------VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG  284 (343)
Q Consensus       214 i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg  284 (343)
                      |.+++|+ .+..|++++.|+.|++|+...+.        .......+|...|++++|+|++..        +|++++.||
T Consensus       255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--------~laS~s~Dg  326 (345)
T 3fm0_A          255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG--------LLASCSDDG  326 (345)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT--------EEEEEETTS
T ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce--------EEEEcCCCC
Confidence            9999998 46799999999999999987542        112222389999999999998631        899999999


Q ss_pred             cEEEEeccCcccc
Q 019326          285 VICVWDVRMAIKE  297 (343)
Q Consensus       285 ~i~vwd~~~~~~~  297 (343)
                      +|++|++.+.++.
T Consensus       327 ~v~~W~~~~~~~~  339 (345)
T 3fm0_A          327 EVAFWKYQRPEGL  339 (345)
T ss_dssp             CEEEEEECC----
T ss_pred             cEEEEEecCCCCc
Confidence            9999999987543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=292.54  Aligned_cols=293  Identities=18%  Similarity=0.195  Sum_probs=241.3

Q ss_pred             eEEeEEecCCCC-CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee--Ee-ccCCCCCeEEEEEeCCCCCCCCceEEE
Q 019326           32 LTQLFSYPAHLS-PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG--AI-HHHESSSVTSLAFYTPQNLSVPRNLFS  105 (343)
Q Consensus        32 ~~~~~~~~~h~~-~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--~~-~~~~~~~v~~l~~~~~~~~~~~~~l~s  105 (343)
                      +..+..+++|.. .|.+++|+  +++|++|+.|+.|++||+.+++...  .+ .+| ...|.+++|+|++     ++|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g-----~~l~s   78 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWSPCG-----NYLAS   78 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-SSCEEEEEECTTS-----SEEEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-CCcEEEEEECCCC-----CEEEE
Confidence            567788889988 99999999  8999999999999999999876432  22 567 8999999999998     89999


Q ss_pred             eeCCCeEEEEECCCc--ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE----EEEcCCcceEEEE
Q 019326          106 TSADGFVSIFDADPF--VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF----YHKIGKEASLIKF  179 (343)
Q Consensus       106 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~  179 (343)
                      |+.|++|++||+...  +++..+.+|...|.+++|+|++++|++++.|++|++||++++....    ...+...+.+++|
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            999999999998765  4678889999999999999999999999999999999998765322    2234577999999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEccccee--EEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCC------------
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAEDAKL--LCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSG------------  242 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~------------  242 (343)
                      +|++++++++ .|+.|++||.+.++.  ...+. |...|.+++|++ +++|++|+.|++|++||....            
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~  238 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD  238 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence            9999999999 899999999988753  34554 888999999994 679999999999999996322            


Q ss_pred             ---ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc----c-ccccccceeEE
Q 019326          243 ---KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL----A-EAKTNSRLTCL  314 (343)
Q Consensus       243 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~-~~~~~~~i~~~  314 (343)
                         +.+..+...|...|.+++|++++.         .|++++.|+.|++|+............    . ...+...|.++
T Consensus       239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          239 PSWKCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             CEEEEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             CccceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence               234455534899999999999887         899999999999999986532211111    0 11345679999


Q ss_pred             EcCCCC-ceeccccCCCCCCCccccC
Q 019326          315 AGSSTK-SFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       315 ~~s~~~-~~~~~~~~~~~~~~~~~~~  339 (343)
                      +|+|++ .+++.+..|+.++.++...
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEecC
Confidence            999998 4899999999888776654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-42  Score=311.54  Aligned_cols=296  Identities=20%  Similarity=0.249  Sum_probs=252.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.|+.|++|+...             .....+.+|..+|.+++|+  +..|++++.|+.|++||.. ++.+..+.
T Consensus       276 ~l~~~~~d~~i~~w~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~  341 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLT  341 (577)
T ss_dssp             EEEEEETTSCEEEEETTS-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             EEEEEeCCCEEEEEeCCC-------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEe
Confidence            478999999999999653             3455678999999999998  7899999999999999986 45566788


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...|.+++|+|++     ++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus       342 ~~-~~~v~~~~~s~~g-----~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          342 GH-SSSVWGVAFSPDG-----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  414 (577)
T ss_dssp             CC-SSCEEEEEECTTS-----SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CC-CCCEEEEEECCCC-----CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            88 8999999999999     89999999999999996 55788899999999999999999999999999999999996


Q ss_pred             cCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEE
Q 019326          160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITA  236 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i  236 (343)
                      ..........+...+.+++|+|++++++++ .|+.+++||.. ++.+..+. |...+.+++|+ ++.+|++++.|+.|++
T Consensus       415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~i  493 (577)
T 2ymu_A          415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL  493 (577)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence            443333344566889999999999999999 89999999975 45555554 88999999999 4679999999999999


Q ss_pred             EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEc
Q 019326          237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAG  316 (343)
Q Consensus       237 ~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~  316 (343)
                      ||. +++.+..+. +|...|++++|+|++.         +|++++.||.|++||... ..   .. ....+...|.+++|
T Consensus       494 w~~-~~~~~~~~~-~h~~~v~~l~~s~dg~---------~l~s~~~dg~v~lwd~~~-~~---~~-~~~~h~~~v~~~~f  557 (577)
T 2ymu_A          494 WNR-NGQLLQTLT-GHSSSVRGVAFSPDGQ---------TIASASDDKTVKLWNRNG-QL---LQ-TLTGHSSSVWGVAF  557 (577)
T ss_dssp             EET-TSCEEEEEE-CCSSCEEEEEECTTSS---------CEEEEETTSEEEEECTTS-CE---EE-EEECCSSCEEEEEE
T ss_pred             EcC-CCCEEEEEe-CCCCCEEEEEEcCCCC---------EEEEEECcCEEEEEeCCC-CE---EE-EEcCCCCCEEEEEE
Confidence            995 588899998 9999999999999887         999999999999999643 21   11 11235678999999


Q ss_pred             CCCCceeccccCCCCCCCc
Q 019326          317 SSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       317 s~~~~~~~~~~~~~~~~~~  335 (343)
                      +||+++++.+..|+.++.+
T Consensus       558 s~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          558 SPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEE
T ss_pred             cCCCCEEEEEeCCCEEEEe
Confidence            9999999999999877654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-42  Score=296.17  Aligned_cols=282  Identities=17%  Similarity=0.243  Sum_probs=242.2

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCC-----------------CCCeEEEEEeCCCCCCCC
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE-----------------SSSVTSLAFYTPQNLSVP  100 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~~~~~~  100 (343)
                      +|...|++++|+  +++|++|+ ++.+++|++.+++.+..+..+.                 ...|.+++|+|++     
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-----  135 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-----  135 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-----
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-----
Confidence            699999999999  88899876 6889999999998888776541                 1249999999999     


Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEe
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFD  180 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  180 (343)
                      ++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++..........+..++++
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~  215 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  215 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999988888888899999999


Q ss_pred             C-CCCEEEEE-eCCcEEEEEcccceeEEEe--------cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC-------
Q 019326          181 G-SGEKFFMV-TEEKVGIHQAEDAKLLCEL--------DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG-------  242 (343)
Q Consensus       181 ~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~--------~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------  242 (343)
                      | ++.+++++ .|+.|++||+++++.+..+        .|...|.+++|+ ++.+|++|+.||.|++||+++.       
T Consensus       216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~  295 (393)
T 1erj_A          216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  295 (393)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence            9 88999999 8999999999998887766        267889999998 4679999999999999999763       


Q ss_pred             -----ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          243 -----KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       243 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                           .....+. +|...|.++++++++.         +|++++.||.|++||++++....   .. ..+...|.+++++
T Consensus       296 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~---~l-~~h~~~v~~v~~~  361 (393)
T 1erj_A          296 TPNSGTCEVTYI-GHKDFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLL---ML-QGHRNSVISVAVA  361 (393)
T ss_dssp             -----CEEEEEE-CCSSCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEE---EE-ECCSSCEEEEEEC
T ss_pred             CCCCCcceEEEe-cccCcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEE---EE-CCCCCCEEEEEec
Confidence                 3445666 8999999999999987         99999999999999999864221   11 1345679999987


Q ss_pred             C------CCceeccccCCCCCCCccccCcc
Q 019326          318 S------TKSFKRPQIGDSAPKGEEKASME  341 (343)
Q Consensus       318 ~------~~~~~~~~~~~~~~~~~~~~~~~  341 (343)
                      +      ++.+++.+..|+.++.++....+
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            6      68899999999998887765543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-43  Score=299.14  Aligned_cols=268  Identities=16%  Similarity=0.147  Sum_probs=218.1

Q ss_pred             eeEEecc------CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCee
Q 019326            2 SLIAGSY------EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      .|++|+.      |+.|++|+.....       +. ........+|...|++++|+ .+.+++++.||.|++||+.+++.
T Consensus        56 ~las~s~d~~~~wd~~v~~~~~~~~~-------~~-~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~  127 (357)
T 4g56_B           56 LLLAASSLSSRTWGGSIWVFKDPEGA-------PN-ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKES  127 (357)
T ss_dssp             EEEEEECSSSSSCCEEEEEESSCC----------C-GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC-------
T ss_pred             EEEEEcCCCCccccCeEEEEECCCCC-------cc-eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccce
Confidence            4778876      6788999876521       11 11223334689999999999 66788899999999999998765


Q ss_pred             ee----EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEEe
Q 019326           75 LG----AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTVG  149 (343)
Q Consensus        75 ~~----~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~  149 (343)
                      ..    ...+| ...|++++|+|++     ++|++|+.|++|++||+++++++..+.+|...|.+++|+|++ .++++++
T Consensus       128 ~~~~~~~~~~h-~~~V~~v~~spdg-----~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          128 LLVNKFAKYEH-DDIVKTLSVFSDG-----TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             -CCCCEEECCC-SSCEEEEEECSSS-----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE
T ss_pred             eEEEeeccCCC-CCCEEEEEECCCC-----CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec
Confidence            43    23467 8999999999999     899999999999999999999999999999999999999987 4789999


Q ss_pred             CCCeEEEEEccCCceeEEEEc---CCcceEEEEeCCC-CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-C
Q 019326          150 RDDCLAMVNLVRGRRSFYHKI---GKEASLIKFDGSG-EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-N  222 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~  222 (343)
                      .|+.|++||+++++.......   ...+.+++|+|++ .+++++ .++.|++||+++++.+..+. |...|.+++|++ +
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred             cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence            999999999999886654432   3568899999975 567777 89999999999999988887 788999999984 3


Q ss_pred             -CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEe-cCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          223 -GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT-KNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       223 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                       .+|++|+.|++|+|||+++++.+..+  +|...|++++|+| ++.         +|+|++.||+|++|++.+.
T Consensus       282 ~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~---------~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHS---------KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTT---------EEEEEETTSCEEEEECC--
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCC---------EEEEEcCCCeEEEEECCCC
Confidence             58999999999999999999877665  5999999999998 455         9999999999999999764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.2e-42  Score=298.62  Aligned_cols=293  Identities=15%  Similarity=0.231  Sum_probs=258.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .|++|+.||.|++||+.+            .+.+..+.+|..+|.+++|+++.+++|+.||.|++||+.+++.+..+..|
T Consensus       131 ~l~sg~~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h  198 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVT------------GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH  198 (445)
T ss_dssp             EEEEEETTSCEEEEETTT------------CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEECCCcEEEEECCC------------CcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence            489999999999999987            34567788999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                       ...|.++.|++       +.+++|+.||+|++||+.+++.+..+.+|...|.+++|  +++++++++.||.|++||+++
T Consensus       199 -~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~  268 (445)
T 2ovr_B          199 -TSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET  268 (445)
T ss_dssp             -SSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG
T ss_pred             -CCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC
Confidence             99999999963       47999999999999999999999999999999999999  678999999999999999999


Q ss_pred             CceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          162 GRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                      ++.+.... +...+.++.+  ++.+++++ .|+.|++||+++++.+..+. |...+.++.+ +++++++|+.||.|++||
T Consensus       269 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE-eCCEEEEEeCCCeEEEEE
Confidence            98776655 4567888888  78888888 89999999999999998887 7778888888 567999999999999999


Q ss_pred             CCCCceeEEeccc---ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCc-ccccccccceeEE
Q 019326          239 TNSGKVAYCIEDA---HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP-LAEAKTNSRLTCL  314 (343)
Q Consensus       239 ~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~i~~~  314 (343)
                      +++++.+..+. .   |...|.++++++  .         +|++++.||.|++||+++++...... .....+.+.|.++
T Consensus       346 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  413 (445)
T 2ovr_B          346 IKTGQCLQTLQ-GPNKHQSAVTCLQFNK--N---------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  413 (445)
T ss_dssp             TTTCCEEEEEC-STTSCSSCEEEEEECS--S---------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             CCCCcEEEEEc-cCCCCCCCEEEEEECC--C---------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence            99999999887 5   889999999964  3         99999999999999999875332221 1123556789999


Q ss_pred             EcCCCCceeccccCCCC
Q 019326          315 AGSSTKSFKRPQIGDSA  331 (343)
Q Consensus       315 ~~s~~~~~~~~~~~~~~  331 (343)
                      +++|++.+++.+..++.
T Consensus       414 ~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          414 RASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EECSSEEEEEEECSSSS
T ss_pred             EecCCEEEEEEcccCCC
Confidence            99999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.4e-43  Score=302.20  Aligned_cols=305  Identities=13%  Similarity=0.082  Sum_probs=247.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+..            ......+..| ..+....|+  +++|++|+.||.|++||+.+++....+.
T Consensus        70 ~l~~~~~d~~v~i~d~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTII------------RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             TEEEEEETTEEEEEECCS------------EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             eEEEEEcCCcEEEEEecc------------cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            488999999999999876            2223333444 333333555  8899999999999999999999988888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...|.+++|+|++     ++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       137 ~h-~~~v~~~~~~~~~-----~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          137 AH-VSEITKLKFFPSG-----EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             SS-SSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             cc-cCccEEEEECCCC-----CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence            88 9999999999998     79999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEEc----C---------------------CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec--CC
Q 019326          160 VRGRRSFYHKI----G---------------------KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD--GK  211 (343)
Q Consensus       160 ~~~~~~~~~~~----~---------------------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--~~  211 (343)
                      ++++.......    .                     ..+..++|+|++++++++ .++.|++||+++++....+.  |.
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  290 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT  290 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence            99987766653    1                     334445567899999999 89999999999998887775  67


Q ss_pred             cceEEeeecC-CC-eEEEEeCCCcEEEEECCCCce-eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          212 KRILCAAPGE-NG-VLFTGGEDRSITAWDTNSGKV-AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       212 ~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      ..+.+++|++ +. +|++|+.||.|++||+++++. +..+...|...|.++.+ +++.         +|++++.||.|++
T Consensus       291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~---------~l~s~~~d~~v~i  360 (420)
T 3vl1_A          291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGA---------LFVSSGFDTSIKL  360 (420)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTE---------EEEEETTTEEEEE
T ss_pred             CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCC---------EEEEecCCccEEE
Confidence            8899999995 44 899999999999999998754 77777347888888855 4554         9999999999999


Q ss_pred             EeccCccccC-----CCcccccccccceeEEEcCCCCc---eeccccCCCCCCCc
Q 019326          289 WDVRMAIKEK-----PLPLAEAKTNSRLTCLAGSSTKS---FKRPQIGDSAPKGE  335 (343)
Q Consensus       289 wd~~~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~---~~~~~~~~~~~~~~  335 (343)
                      |++..+....     ..+.....+...|.+++|+|++.   .+++...++....+
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY  415 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence            9998753221     11222334566799999999999   55555555544433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.2e-43  Score=298.09  Aligned_cols=267  Identities=15%  Similarity=0.231  Sum_probs=231.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS------   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~------   73 (343)
                      .|++|+.||.|++||+.+            ......+.+|...|.+++|+  +++|++|+.|+.+++||+.+..      
T Consensus        80 ~l~s~s~D~~v~iWd~~~------------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           80 WIVSASQDGRLIVWNALT------------SQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             CEEEEETTSEEEEEETTT------------TEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSS
T ss_pred             EEEEEeCCCeEEEEECCC------------CccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCc
Confidence            489999999999999876            35567778999999999999  8999999999999999987532      


Q ss_pred             -eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-----eeccccEEEEEEec-CCCEEE
Q 019326           74 -SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-----KVHKKGVNDLAVHH-SGKLAL  146 (343)
Q Consensus        74 -~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~-~~~~l~  146 (343)
                       ....+.+| ...|.++.|.|++    +..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++++|+
T Consensus       148 ~~~~~~~gh-~~~v~~~~~~~~~----~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  222 (380)
T 3iz6_a          148 PVSRVLTGH-KGYASSCQYVPDQ----ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI  222 (380)
T ss_dssp             TTCCBCCCC-SSCCCCCBCCSSS----SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred             cceeeccCC-CcceEEEEEecCC----CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence             34456788 8999999999976    267999999999999999999888777     57889999999987 789999


Q ss_pred             EEeCCCeEEEEEccCC-ceeEE-EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC--------cceE
Q 019326          147 TVGRDDCLAMVNLVRG-RRSFY-HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK--------KRIL  215 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--------~~i~  215 (343)
                      +|+.|++|++||++.. +.+.. ..+...|.+++|+|++++++++ .|+.|++||+++++.+..+...        ..+.
T Consensus       223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred             EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE
Confidence            9999999999999844 44433 3456789999999999999999 9999999999999988877521        2388


Q ss_pred             Eeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec---ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          216 CAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE---DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       216 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      +++|+ ++.++++|+.||.|++||..+++.+..+.   .+|...|++++|+|++.         +|++|+.||+|++|++
T Consensus       303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~---------~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS---------ALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS---------EEEEECTTSCEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC---------EEEEeeCCCCEEEEec
Confidence            99998 56899999999999999999998887772   37999999999999988         9999999999999999


Q ss_pred             cCc
Q 019326          292 RMA  294 (343)
Q Consensus       292 ~~~  294 (343)
                      ...
T Consensus       374 ~~~  376 (380)
T 3iz6_a          374 SGH  376 (380)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-41  Score=289.78  Aligned_cols=268  Identities=19%  Similarity=0.271  Sum_probs=225.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecC------------------CCCCeEEEEec--CceEEEeeCCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA------------------HLSPITTVAVS--GTAAASGGTDD   62 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~l~~~--~~~l~s~~~dg   62 (343)
                      |++|+ ++.+++|++...       .     .+..+..                  +...|++++|+  +++|++|+.|+
T Consensus        79 la~g~-~~~v~i~~~~~g-------~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~  145 (393)
T 1erj_A           79 LATGC-NKTTQVYRVSDG-------S-----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  145 (393)
T ss_dssp             EEEEC-BSCEEEEETTTC-------C-----EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEc-CCcEEEEEecCC-------C-----EEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence            55655 789999998762       1     1222222                  33459999998  88999999999


Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-C
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-S  141 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~  141 (343)
                      .|++||+.+++.+..+.+| ...|.+++|+|++     ++|++++.|++|++||++++++...+. +...+.+++|+| +
T Consensus       146 ~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~-----~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  218 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGH-EQDIYSLDYFPSG-----DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD  218 (393)
T ss_dssp             CEEEEETTTTEEEEEECCC-SSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred             eEEEEECCCCcEEEEEccC-CCCEEEEEEcCCC-----CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence            9999999999999999999 8999999999998     799999999999999999988887776 667899999999 8


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeEEE--------EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccce---------
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRSFYH--------KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK---------  203 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~---------  203 (343)
                      +++|++++.|+.|++||+++++.+...        .+...+.+++|+|++++++++ .|+.|++||+++..         
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            899999999999999999998866544        245679999999999999999 89999999997643         


Q ss_pred             ---eEEEe-cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE
Q 019326          204 ---LLCEL-DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA  278 (343)
Q Consensus       204 ---~~~~~-~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  278 (343)
                         ....+ .|...|.+++++ ++.+|++|+.|+.|++||..+++++..+. +|...|.++++++...   +.+++.+|+
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~---~~p~~~~l~  374 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSS---LGPEYNVFA  374 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCT---TCTTCEEEE
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcC---cCCCCCEEE
Confidence               22333 377889999998 46799999999999999999999999998 9999999999987542   345667999


Q ss_pred             EEcCCCcEEEEeccCc
Q 019326          279 SASSDGVICVWDVRMA  294 (343)
Q Consensus       279 s~~~dg~i~vwd~~~~  294 (343)
                      +|+.||+|++|+++..
T Consensus       375 sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          375 TGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEETTSEEEEEEEEEC
T ss_pred             EECCCCcEEECccccc
Confidence            9999999999999753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-43  Score=301.55  Aligned_cols=307  Identities=16%  Similarity=0.130  Sum_probs=256.8

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC----CeeeeEecc
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST----SSSLGAIHH   80 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~   80 (343)
                      +.|+.|++||+...       ...  .+...+ .|...|++++|+  +.+|++|+.||.|++||+.+    .+.+..+..
T Consensus        42 ~~d~~v~iw~~~~~-------~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~  111 (416)
T 2pm9_A           42 STDSSLELWSLLAA-------DSE--KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN  111 (416)
T ss_dssp             CCCCCCEEEESSSG-------GGC--SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred             CCCCeEEEEEccCC-------CCC--cEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence            88999999999862       111  122333 589999999998  88999999999999999987    457788888


Q ss_pred             CCCCCeEEEEEeCC-CCCCCCceEEEeeCCCeEEEEECCCcc------eee---eeeeccccEEEEEEecC-CCEEEEEe
Q 019326           81 HESSSVTSLAFYTP-QNLSVPRNLFSTSADGFVSIFDADPFV------LLT---SVKVHKKGVNDLAVHHS-GKLALTVG  149 (343)
Q Consensus        81 ~~~~~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~i~~~~~-~~~l~~~~  149 (343)
                      | ...|.+++|+|+ +     ++|++++.|+.|++||+.+++      ...   .+..|...|.+++|+|+ +.+|++++
T Consensus       112 h-~~~v~~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  185 (416)
T 2pm9_A          112 H-SSSVKTVKFNAKQD-----NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG  185 (416)
T ss_dssp             S-SSCCCEEEECSSST-----TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred             C-ccceEEEEEcCCCC-----CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence            8 899999999998 5     799999999999999998876      332   33678899999999999 78999999


Q ss_pred             CCCeEEEEEccCCceeEEEEc-------CCcceEEEEeCCC-CEEEEE-eCC---cEEEEEcccc-eeEEEec--CCcce
Q 019326          150 RDDCLAMVNLVRGRRSFYHKI-------GKEASLIKFDGSG-EKFFMV-TEE---KVGIHQAEDA-KLLCELD--GKKRI  214 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~-~~~---~i~~~d~~~~-~~~~~~~--~~~~i  214 (343)
                      .|+.|++||+++++.......       ...+.+++|+|++ .+++++ .++   .|++||++++ .....+.  |...+
T Consensus       186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v  265 (416)
T 2pm9_A          186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI  265 (416)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE
T ss_pred             CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce
Confidence            999999999999988776665       5679999999997 577777 676   9999999986 5666665  78899


Q ss_pred             EEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC-CCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          215 LCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN-DGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       215 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      .+++|++  +.+|++++.||.|++||+++++.+..+. +|...|.+++|+|++ .         +|++++.||.|++||+
T Consensus       266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~---------~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPD---------LFACASFDNKIEVQTL  335 (416)
T ss_dssp             EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTT---------EEEECCSSSEEEEEES
T ss_pred             eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCC---------EEEEEecCCcEEEEEc
Confidence            9999985  6799999999999999999999999999 999999999999987 5         9999999999999999


Q ss_pred             cCccccCCCcc------------c-------------------ccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          292 RMAIKEKPLPL------------A-------------------EAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       292 ~~~~~~~~~~~------------~-------------------~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      .+.........            .                   ...+..++.+++|++++++++.+..++.++.++...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          336 QNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            87643221100            0                   000345678999999999999999999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=293.50  Aligned_cols=311  Identities=11%  Similarity=0.123  Sum_probs=258.7

Q ss_pred             eeEEeccCCeEEEEEe----ecCCCCCCCCcc-eeeEEeEEecC----------CCCCeEEEEec--CceEEEeeCCCeE
Q 019326            2 SLIAGSYEKFIWGYKL----KPSNHYSSDQKT-LTLTQLFSYPA----------HLSPITTVAVS--GTAAASGGTDDTI   64 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~----~~~~~~~~~~~~-~~~~~~~~~~~----------h~~~v~~l~~~--~~~l~s~~~dg~i   64 (343)
                      .|++|+.||.|++|++    ..       +.. ........+..          |.+.|++++|+  +++|++|+.||.|
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  132 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQE-------GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGEL  132 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC-------------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEecCCceEEEEEEecccCC-------ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeE
Confidence            5899999999999999    55       221 11112222222          68899999999  8899999999999


Q ss_pred             EEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecccc------------
Q 019326           65 HLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKG------------  132 (343)
Q Consensus        65 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------  132 (343)
                      ++|| .+++.+..+..| ...|.+++|+|++     ++|++++.|+.|++||+.+++.+..+..+...            
T Consensus       133 ~i~~-~~~~~~~~~~~~-~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (425)
T 1r5m_A          133 RLWN-KTGALLNVLNFH-RAPIVSVKWNKDG-----THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD  205 (425)
T ss_dssp             EEEE-TTSCEEEEECCC-CSCEEEEEECTTS-----SEEEEEETTCCEEEEETTTTEEEEEECCC---------------
T ss_pred             EEEe-CCCCeeeeccCC-CccEEEEEECCCC-----CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCC
Confidence            9999 678888899988 8999999999998     79999999999999999999999888877776            


Q ss_pred             ---EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE
Q 019326          133 ---VNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       133 ---v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~  207 (343)
                         +.+++|+|++ .+++++.++.|++||+++++..... .+...+.+++|+|++++++++ .++.+++||+++++....
T Consensus       206 ~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  284 (425)
T 1r5m_A          206 GSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC  284 (425)
T ss_dssp             CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE
T ss_pred             cceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE
Confidence               9999999985 6889999999999999998776555 356789999999999999999 799999999999988888


Q ss_pred             ec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          208 LD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       208 ~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      +. |...+.+++|++++++++++.||.|++||+++++.+..+. .|...|.+++|+|++.         +|++++.||.|
T Consensus       285 ~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~---------~l~~~~~dg~i  354 (425)
T 1r5m_A          285 FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQ---------KYAVAFMDGQV  354 (425)
T ss_dssp             ECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSS---------EEEEEETTSCE
T ss_pred             ecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCC---------EEEEEECCCeE
Confidence            87 8889999999966699999999999999999999999998 8999999999999887         99999999999


Q ss_pred             EEEeccCccccC---------------CCccccccc--cc-ceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          287 CVWDVRMAIKEK---------------PLPLAEAKT--NS-RLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       287 ~vwd~~~~~~~~---------------~~~~~~~~~--~~-~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ++||+++.....               ...+..+..  .. .|.+++|++++.+++.+..++.+..++.
T Consensus       355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            999998764100               001222222  23 8999999999999999999998876654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-40  Score=280.12  Aligned_cols=272  Identities=19%  Similarity=0.250  Sum_probs=238.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++||+..       .+.....+...+.+|..+|++++|+  +++|++++.|+.|++|+...........
T Consensus        53 ~l~S~s~D~~i~vWd~~~-------~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~  125 (340)
T 4aow_A           53 MILSASRDKTIIMWKLTR-------DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV  125 (340)
T ss_dssp             EEEEEETTSCEEEEEECC-------SSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCC-------CCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec
Confidence            478999999999999987       3344456778889999999999998  8999999999999999999998888888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-eeeeeeeccccEEEEEEecCC--CEEEEEeCCCeEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVKVHKKGVNDLAVHHSG--KLALTVGRDDCLAM  156 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~d~~i~~  156 (343)
                      .+ ...+..+.+++.+     .+|++++.|+.+++||..... ......+|...+..++|++++  .++++++.|+.|++
T Consensus       126 ~~-~~~~~~~~~~~~~-----~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i  199 (340)
T 4aow_A          126 GH-TKDVLSVAFSSDN-----RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV  199 (340)
T ss_dssp             CC-SSCEEEEEECTTS-----SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             CC-CCceeEEEEeecC-----ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence            88 8899999999998     799999999999999997644 334456788999999998865  57889999999999


Q ss_pred             EEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcE
Q 019326          157 VNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSI  234 (343)
Q Consensus       157 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i  234 (343)
                      ||+++++...... +...+.+++|+|++++++++ .|+.|++||+++.+.+..+.+...+.++.+++++.+++++.|+.|
T Consensus       200 ~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i  279 (340)
T 4aow_A          200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI  279 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEE
T ss_pred             EECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEE
Confidence            9999988766554 45789999999999999999 899999999999999999999999999999988888899999999


Q ss_pred             EEEECCCCceeEEec--------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          235 TAWDTNSGKVAYCIE--------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++||++++..+..+.        .+|...|++++|+|++.         +|++|+.||.|+|||+++|.
T Consensus       280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~---------~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ---------TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS---------EEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC---------EEEEEeCCCEEEEEeCCCcC
Confidence            999999887766554        26889999999999887         99999999999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.1e-41  Score=282.53  Aligned_cols=276  Identities=15%  Similarity=0.183  Sum_probs=241.6

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee---Eec--cCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG---AIH--HHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~---~~~--~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      ..+|..+|++++|+  +++|++++ ||.|++||+.+++...   .+.  .| ...|.+++|+|++     ++|++++.||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-----~~l~~~~~d~  119 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR-DNYIRSCKLLPDG-----CTLIVGGEAS  119 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT-TSBEEEEEECTTS-----SEEEEEESSS
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCC-CCcEEEEEEcCCC-----CEEEEEcCCC
Confidence            34799999999999  78899988 9999999998775333   332  56 8999999999998     7999999999


Q ss_pred             eEEEEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEE
Q 019326          111 FVSIFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       111 ~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  187 (343)
                      .|++||+.+++  ....+..|...|.+++|+|+++++++++.||.|++||+++++...... +...+.+++|+|+++.++
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence            99999998876  667778899999999999999999999999999999999988776655 467899999999999999


Q ss_pred             EE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ++ .++.+++||+++++....+.+...+.+++++ +++++++++.++.|++||+++++.. .+. .|...|.+++|+|++
T Consensus       200 ~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTS
T ss_pred             EEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECCCC
Confidence            99 8999999999999999999999999999998 4679999999999999999988754 555 799999999999988


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      .         +|++++.||.|++||+.++..     +....+...+.++++++++.+++.+..++.++.++
T Consensus       278 ~---------~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          278 K---------WFVSTGKDNLLNAWRTPYGAS-----IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             S---------EEEEEETTSEEEEEETTTCCE-----EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             C---------EEEEecCCCcEEEEECCCCeE-----EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            7         999999999999999998642     23345567899999999999999999998776554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-40  Score=277.57  Aligned_cols=266  Identities=16%  Similarity=0.236  Sum_probs=235.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~   77 (343)
                      .|++++ ||.|++|++...       ............+|..+|++++|+  +++|++++.||.|++||+.+++  ....
T Consensus        65 ~l~~~~-dg~i~iw~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  136 (337)
T 1gxr_A           65 HVYTGG-KGCVKVWDISHP-------GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE  136 (337)
T ss_dssp             EEEEEC-BSEEEEEETTST-------TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred             EEEEcC-CCeEEEEECCCC-------CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence            356666 999999999862       222222222334799999999999  7899999999999999999887  5667


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      +..| ...|.+++|+|++     +++++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       137 ~~~~-~~~i~~~~~~~~~-----~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  210 (337)
T 1gxr_A          137 LTSS-APACYALAISPDS-----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             EECS-SSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccC-CCceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence            7778 8899999999998     799999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEE
Q 019326          158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSIT  235 (343)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~  235 (343)
                      |+++++..........+.+++|+|+++.++++ .++.+++||+++.+......|...+.+++|++ +++|++++.||.|+
T Consensus       211 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            99999988888888999999999999999999 89999999999988876666899999999994 67999999999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +||+.+++.+....  |...|.+++|+|++.         +|++++.||.|++|++.
T Consensus       291 ~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~---------~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          291 AWRTPYGASIFQSK--ESSSVLSCDISVDDK---------YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEETTTCCEEEEEE--CSSCEEEEEECTTSC---------EEEEEETTSCEEEEEEE
T ss_pred             EEECCCCeEEEEec--CCCcEEEEEECCCCC---------EEEEecCCCeEEEEEEe
Confidence            99999998886654  899999999999887         99999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-40  Score=290.37  Aligned_cols=292  Identities=15%  Similarity=0.220  Sum_probs=249.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .|++|+.||.|++||+.+            .+.+..+.+|.++|++++|+ +..|++|+.||.|++||+.+++.+..+.+
T Consensus       134 ~l~sgs~dg~i~vwd~~~------------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSIN------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEEETTSCEEEEETTT------------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEcCCCcEEEEECCC------------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            489999999999999887            45677788999999999999 56999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeC--CCCCCCCceEEEeeCCCeEEEEECCCcce-----------------------eeeeeeccccEEE
Q 019326           81 HESSSVTSLAFYT--PQNLSVPRNLFSTSADGFVSIFDADPFVL-----------------------LTSVKVHKKGVND  135 (343)
Q Consensus        81 ~~~~~v~~l~~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~  135 (343)
                      | ...|.+++|++  ++     .++++|+.||+|++||+.+.+.                       +..+.+|...|.+
T Consensus       202 h-~~~v~~l~~~~~~~~-----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  275 (464)
T 3v7d_B          202 H-NSTVRCLDIVEYKNI-----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT  275 (464)
T ss_dssp             C-SSCEEEEEEEESSSC-----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE
T ss_pred             C-CCccEEEEEecCCCC-----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE
Confidence            9 99999999994  55     7999999999999999977542                       4566778888887


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCc
Q 019326          136 LAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKK  212 (343)
Q Consensus       136 i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~  212 (343)
                      +  +++++++++++.|+.|++||+++++.+.... +...+.+++|+|+++.++++ .|+.|++||+++++.+..+. |..
T Consensus       276 ~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~  353 (464)
T 3v7d_B          276 V--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA  353 (464)
T ss_dssp             E--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             E--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Confidence            7  5678899999999999999999988776654 46789999999999999999 89999999999999999887 888


Q ss_pred             ceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          213 RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       213 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      .+.++.++ ++++++++.||.|++||+++++......  |...+..+++++++.         ++++++ ||.|++||++
T Consensus       354 ~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          354 LVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDN---------ILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             CEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSS---------EEEEEE-TTEEEEEETT
T ss_pred             cEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCC---------EEEEec-CCeEEEEECC
Confidence            99999995 6899999999999999999988777665  777888899999887         899888 9999999999


Q ss_pred             CccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          293 MAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      +++.....   ...+...|.+++++ ++.+++.+..++
T Consensus       421 ~g~~~~~~---~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          421 SGKLVHAN---ILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             TCCEEESC---TTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCcEEehh---hccCCCcEEEEEec-CCEEEEEEEeCC
Confidence            87543221   22346779999997 444555544444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-40  Score=277.95  Aligned_cols=290  Identities=17%  Similarity=0.183  Sum_probs=243.8

Q ss_pred             eeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe-----eeeEeccCCCCCeEEEEEeCCCCCCCCce
Q 019326           31 TLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS-----SLGAIHHHESSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~~~~~  102 (343)
                      +.....+|+||.++|++|+|+   +++|+||+.||+|++||+.+.+     +...+.+| ...|.+++|+|++     ++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg-----~~  100 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDG-----QF  100 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTS-----SE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCC-----CE
Confidence            355667899999999999998   5799999999999999997653     45677888 9999999999999     89


Q ss_pred             EEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEe
Q 019326          103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFD  180 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~  180 (343)
                      |++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+..........  +...+..++|+
T Consensus       101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~  180 (340)
T 4aow_A          101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS  180 (340)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred             EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence            9999999999999999988888888888999999999999999999999999999998765543322  34678889998


Q ss_pred             CCC--CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccccc
Q 019326          181 GSG--EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR  255 (343)
Q Consensus       181 ~~~--~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~  255 (343)
                      +++  ..++++ .|+.|++||+++++....+. |..+|.+++|++ +++|++|+.||.|++||+++.+.+..+.  +...
T Consensus       181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~  258 (340)
T 4aow_A          181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDI  258 (340)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSC
T ss_pred             cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCce
Confidence            765  456666 89999999999999988887 788999999984 6799999999999999999999998887  5678


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC-----CcccccccccceeEEEcCCCCceeccccCCC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP-----LPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      |.++.++|++          .+++++.|+.|++||+++......     .......+...|++++|+|++++++.+..|+
T Consensus       259 v~~~~~~~~~----------~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          259 INALCFSPNR----------YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEEEEECSSS----------SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeeecCCCC----------ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            9999999886          467777899999999987632211     1112224456799999999999999999999


Q ss_pred             CCCCcccc
Q 019326          331 APKGEEKA  338 (343)
Q Consensus       331 ~~~~~~~~  338 (343)
                      .++.++..
T Consensus       329 ~v~iW~~~  336 (340)
T 4aow_A          329 LVRVWQVT  336 (340)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEeCC
Confidence            98877654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-40  Score=297.94  Aligned_cols=297  Identities=20%  Similarity=0.267  Sum_probs=253.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.|+.|++|+...             +.+..+.+|..+|++++|+  +..|++++.|+.|++||.. ++.+..+.
T Consensus       235 ~l~~~~~d~~i~~w~~~~-------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~  300 (577)
T 2ymu_A          235 TIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLT  300 (577)
T ss_dssp             CEEEEETTSCEEEECTTS-------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             EEEEEeCCCEEEEEeCCC-------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEe
Confidence            478999999999999643             3456678999999999998  7899999999999999964 67788888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      +| ...|.+++|+|++     +.|++++.|++|++||... +.+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus       301 ~h-~~~v~~~~~~~~~-----~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          301 GH-SSSVWGVAFSPDG-----QTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR  373 (577)
T ss_dssp             CC-SSCEEEEEECTTS-----SEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cC-CCCeEEEEECCCC-----CEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence            89 8999999999998     7999999999999999865 556778889999999999999999999999999999996


Q ss_pred             cCCceeE-EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEE
Q 019326          160 VRGRRSF-YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSIT  235 (343)
Q Consensus       160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~  235 (343)
                      . ++.+. ...+...+.+++|+|++++++++ .|+.|++||. +++.+..+. |...|.+++|++ +++|++++.|+.|+
T Consensus       374 ~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          374 N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             T-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             C-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            4 44443 34456889999999999999999 8999999996 455555555 889999999994 67999999999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEE
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLA  315 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~  315 (343)
                      +||. +++.+..+. +|...|++++|+|++.         +|++++.|+.|++||.... ..   .. ...+...|++++
T Consensus       452 ~w~~-~~~~~~~~~-~~~~~v~~~~~spd~~---------~las~~~d~~i~iw~~~~~-~~---~~-~~~h~~~v~~l~  515 (577)
T 2ymu_A          452 LWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQ---------TIASASDDKTVKLWNRNGQ-LL---QT-LTGHSSSVRGVA  515 (577)
T ss_dssp             EEET-TSCEEEEEE-CCSSCEEEEEECTTSC---------EEEEEETTSEEEEEETTSC-EE---EE-EECCSSCEEEEE
T ss_pred             EEEC-CCCEEEEEc-CCCCCEEEEEEcCCCC---------EEEEEeCCCEEEEEcCCCC-EE---EE-EeCCCCCEEEEE
Confidence            9996 477888888 9999999999999887         9999999999999996432 11   11 123456799999


Q ss_pred             cCCCCceeccccCCCCCCCccc
Q 019326          316 GSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       316 ~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      |+|++++++.+..|+.++.++.
T Consensus       516 ~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          516 FSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECT
T ss_pred             EcCCCCEEEEEECcCEEEEEeC
Confidence            9999999999999998877663

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-40  Score=305.88  Aligned_cols=268  Identities=19%  Similarity=0.205  Sum_probs=230.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.|+.|++|++..       ...........+.+|...|++++|+  +++|++|+.||.|++||+.+++.+..+.
T Consensus       397 ~l~s~s~D~~i~~W~~~~-------~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~  469 (694)
T 3dm0_A          397 IIVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV  469 (694)
T ss_dssp             EEEEEETTSEEEEEECCC-------STTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEccC-------CCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe
Confidence            488999999999999976       2222234556778999999999999  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee---eeccccEEEEEEecCC--CEEEEEeCCCeE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV---KVHKKGVNDLAVHHSG--KLALTVGRDDCL  154 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~--~~l~~~~~d~~i  154 (343)
                      +| ...|.+++|+|++     ++|++|+.|++|++||..........   .+|...|.+++|+|++  ..+++++.|++|
T Consensus       470 ~h-~~~v~~~~~s~~~-----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          470 GH-TKDVLSVAFSLDN-----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             CC-SSCEEEEEECTTS-----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             CC-CCCEEEEEEeCCC-----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence            99 9999999999998     79999999999999998654332222   4688899999999986  689999999999


Q ss_pred             EEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCC
Q 019326          155 AMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDR  232 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg  232 (343)
                      ++||+++++...... +...+.+++|+|++++++++ .|+.|++||+++++.+..+.+...+.+++|++++.+++++.++
T Consensus       544 ~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCC
Confidence            999999988765544 56789999999999999999 8999999999999999998888899999999777666667778


Q ss_pred             cEEEEECCCCceeEEecccc-------------------cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          233 SITAWDTNSGKVAYCIEDAH-------------------SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h-------------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      .|++||+++++.+..+. .+                   ...+++++|+|++.         +|++|+.||.|+||++.
T Consensus       624 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~---------~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          624 GIKIWDLESKSIVEDLK-VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS---------TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEEETTTTEEEEEEC-CCCC----------------CCCCEEEEEECTTSS---------EEEEEETTSEEEEEEC-
T ss_pred             CEEEEECCCCCChhhhc-cccccccccccccccccCCceeEEeeeEEEcCCCC---------EEEEEcCCCeEEEEecc
Confidence            89999999998887765 22                   12378899999887         99999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-41  Score=288.71  Aligned_cols=296  Identities=14%  Similarity=0.191  Sum_probs=244.2

Q ss_pred             eeeEEeEEe-cCCCCCeEEEEec------CceEEEeeCCCeEEEEEcCCCeeeeEeccC----CCCCeEEEEEeCCCCCC
Q 019326           30 LTLTQLFSY-PAHLSPITTVAVS------GTAAASGGTDDTIHLYDLSTSSSLGAIHHH----ESSSVTSLAFYTPQNLS   98 (343)
Q Consensus        30 ~~~~~~~~~-~~h~~~v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~   98 (343)
                      ++++....+ .+|..+|++++|+      ...+++++.++.|++||+.+++.+..+..+    +...|.+++|+|+.. .
T Consensus         5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   83 (366)
T 3k26_A            5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN-T   83 (366)
T ss_dssp             CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT-T
T ss_pred             eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC-C
Confidence            334443333 4899999999998      245777777789999999988777766543    157899999999931 0


Q ss_pred             CCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceeEEE----EcCCc
Q 019326           99 VPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRRSFYH----KIGKE  173 (343)
Q Consensus        99 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~~~  173 (343)
                      .+.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.....    .+...
T Consensus        84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            016899999999999999999999999999999999999999 8999999999999999999999887775    46688


Q ss_pred             ceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----------------------------CCcceEEeeecCCC
Q 019326          174 ASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----------------------------GKKRILCAAPGENG  223 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----------------------------~~~~i~~~~~~~~~  223 (343)
                      +.+++|+|++.+++++ .|+.|++||+++++....+.                             |...|.+++|+ ++
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~  242 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GD  242 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TT
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CC
Confidence            9999999999999999 89999999999876544332                             78889999997 78


Q ss_pred             eEEEEeCCCcEEEEECCCCce--------------eEEecccccccEEEEEEEec--CCCCCCCCCCeEEEEEcCCCcEE
Q 019326          224 VLFTGGEDRSITAWDTNSGKV--------------AYCIEDAHSARVKGIVVLTK--NDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       224 ~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      ++++++.||.|++||+++++.              +..+. .|...|++++|+++  +.         +|++++.||.|+
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~  312 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQK---------MLALGNQVGKLY  312 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSS---------EEEEECTTSCEE
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCc---------EEEEEecCCcEE
Confidence            999999999999999987754              67777 89999999999998  66         999999999999


Q ss_pred             EEeccCccccCCCc--ccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          288 VWDVRMAIKEKPLP--LAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       288 vwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +||++++.......  +....+...|.+++|++++.+++.+..|+.++.++.
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            99999874332111  111122578999999999999999999998776553

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4e-40  Score=282.90  Aligned_cols=281  Identities=14%  Similarity=0.140  Sum_probs=235.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-C--------ceEEEeeCCCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-G--------TAAASGGTDDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~--------~~l~s~~~dg~i~iwd~~~~   72 (343)
                      .|++|+.||.|++|++.....      .........+.+|..+|++++|+ .        .+|++++.||.|++||+.++
T Consensus        28 ~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~  101 (397)
T 1sq9_A           28 FTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE  101 (397)
T ss_dssp             EEEEEETTSEEEEEESBCCTT------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEEcCCCEEEEEECCCccc------ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC
Confidence            589999999999999987321      11123456667999999999998 4        69999999999999999988


Q ss_pred             ee-----eeEeccCC----CCCeEEEEEe----CCCCCCCCce-EEEeeCCCeEEEEECCC------cceee-----eee
Q 019326           73 SS-----LGAIHHHE----SSSVTSLAFY----TPQNLSVPRN-LFSTSADGFVSIFDADP------FVLLT-----SVK  127 (343)
Q Consensus        73 ~~-----~~~~~~~~----~~~v~~l~~~----~~~~~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~~  127 (343)
                      +.     +..+..|.    ...|.+++|+    |++     ++ |++++.||.|++||+.+      ++.+.     .+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (397)
T 1sq9_A          102 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-----SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ  176 (397)
T ss_dssp             TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred             cccccccceeecccccccCCCcEEEEEEeeccCCCC-----ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee
Confidence            87     78888772    3899999999    888     78 99999999999999988      77776     774


Q ss_pred             e-------ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------CCcceEEEEeCCCCEEEEE-eC-
Q 019326          128 V-------HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------GKEASLIKFDGSGEKFFMV-TE-  191 (343)
Q Consensus       128 ~-------~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~-  191 (343)
                      +       |...|.+++|+|++ ++++++.|+.|++||+++++.+.....       ...+.+++|+|++++++++ .+ 
T Consensus       177 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~  255 (397)
T 1sq9_A          177 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN  255 (397)
T ss_dssp             EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             eeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC
Confidence            4       88899999999999 999999999999999999988877775       7889999999999999999 78 


Q ss_pred             --CcEEEEEcccceeEEEec--------------CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecc----
Q 019326          192 --EKVGIHQAEDAKLLCELD--------------GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED----  250 (343)
Q Consensus       192 --~~i~~~d~~~~~~~~~~~--------------~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  250 (343)
                        +.|++||+++++.+..+.              |...|.+++|+ ++++|++++.||.|++||+++++.+..+..    
T Consensus       256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  335 (397)
T 1sq9_A          256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  335 (397)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence              899999999999888876              67889999998 467999999999999999999998888761    


Q ss_pred             -cc---------------cccEEEEEEEecCCCCC-CCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          251 -AH---------------SARVKGIVVLTKNDGGS-TAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       251 -~h---------------~~~v~~~~~~~~~~~~~-~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                       +|               ...|++++|+|++.... -..++.+|++++.||.|++|+++++
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          336 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence             35               89999999999971000 0001129999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-40  Score=284.93  Aligned_cols=293  Identities=13%  Similarity=0.071  Sum_probs=248.4

Q ss_pred             eEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCe------eeeEeccCCCCCeEEEEEeCC----CCCCCCc
Q 019326           32 LTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSS------SLGAIHHHESSSVTSLAFYTP----QNLSVPR  101 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~l~~~~~----~~~~~~~  101 (343)
                      ......+.+|.++|++++|++++|++|+.||.|++||+.+++      .+..+..| ...|.+++|+|+    +  ...+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g--~~~~   82 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDA--FELC   82 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTT--EEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCC--cccc
Confidence            455667789999999999999999999999999999999987      78888888 899999999998    3  0003


Q ss_pred             eEEEeeCCCeEEEEECCCcce-----eeeeeec-----cccEEEEEEe----cCCCE-EEEEeCCCeEEEEEccC-----
Q 019326          102 NLFSTSADGFVSIFDADPFVL-----LTSVKVH-----KKGVNDLAVH----HSGKL-ALTVGRDDCLAMVNLVR-----  161 (343)
Q Consensus       102 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~d~~i~~wd~~~-----  161 (343)
                      +|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+++     
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            899999999999999988877     8888888     5899999999    99999 99999999999999998     


Q ss_pred             -CceeE-----EEE--------cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC-------CcceEEeee
Q 019326          162 -GRRSF-----YHK--------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG-------KKRILCAAP  219 (343)
Q Consensus       162 -~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-------~~~i~~~~~  219 (343)
                       ++.+.     ...        +...+.+++|+|++ .++++ .++.|++||+++++.+..+..       ...+.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence             55443     333        46789999999999 88888 899999999999999888875       889999999


Q ss_pred             c-CCCeEEEEeCC---CcEEEEECCCCceeEEeccc-------------ccccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          220 G-ENGVLFTGGED---RSITAWDTNSGKVAYCIEDA-------------HSARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       220 ~-~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                      + ++.+|++++.|   |.|++||+++++.+..+. +             |...|.+++|+|++.         +|++++.
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~  311 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TLCSAGW  311 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSS---------EEEEEET
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCC---------EEEEEeC
Confidence            8 46799999999   999999999999999998 7             999999999999887         9999999


Q ss_pred             CCcEEEEeccCccccCCCccc--cccc---------------ccceeEEEcCCCC----------ceeccccCCCCCCCc
Q 019326          283 DGVICVWDVRMAIKEKPLPLA--EAKT---------------NSRLTCLAGSSTK----------SFKRPQIGDSAPKGE  335 (343)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~--~~~~---------------~~~i~~~~~s~~~----------~~~~~~~~~~~~~~~  335 (343)
                      ||.|++||++++.........  ...+               ...|.+++|++++          .+++.+..++.++.+
T Consensus       312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence            999999999987533222200  0022               6789999999998          799999999888776


Q ss_pred             ccc
Q 019326          336 EKA  338 (343)
Q Consensus       336 ~~~  338 (343)
                      +..
T Consensus       392 ~~~  394 (397)
T 1sq9_A          392 REA  394 (397)
T ss_dssp             EEE
T ss_pred             EcC
Confidence            654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-40  Score=304.18  Aligned_cols=288  Identities=18%  Similarity=0.196  Sum_probs=239.5

Q ss_pred             EEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           33 TQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      .....+++|.+.|++++|+   +++|+||+.|++|++|++.+.     .....+.+| ...|.+++|+|++     ++|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~g-----~~l~  446 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLSSDG-----QFAL  446 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEECTTS-----SEEE
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-CCcEEEEEECCCC-----CEEE
Confidence            3445678999999999998   478999999999999999763     345678888 9999999999999     8999


Q ss_pred             EeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE----EcCCcceEEEEe
Q 019326          105 STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH----KIGKEASLIKFD  180 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~~~~~  180 (343)
                      +|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.........    .+...+.+++|+
T Consensus       447 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999998665433322    234568999999


Q ss_pred             CCC--CEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccccc
Q 019326          181 GSG--EKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR  255 (343)
Q Consensus       181 ~~~--~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~  255 (343)
                      |++  ..++++ .|+.|++||+++++....+. |...|.++++++ +++|++|+.||.|++||+++++.+..+.  +...
T Consensus       527 ~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~  604 (694)
T 3dm0_A          527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSV  604 (694)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSC
T ss_pred             CCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCc
Confidence            987  567777 89999999999999888887 888999999994 6799999999999999999999888877  5678


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc---------------ccccccceeEEEcCCCC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA---------------EAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~~i~~~~~s~~~  320 (343)
                      |.+++|+|++.         +|+++ .|+.|++||++++.........               .......+++++|+|++
T Consensus       605 v~~~~~sp~~~---------~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          605 IHALCFSPNRY---------WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             EEEEEECSSSS---------EEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEEEEEcCCCc---------EEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            99999999875         66555 5677999999987432211100               00011136889999999


Q ss_pred             ceeccccCCCCCCCcccc
Q 019326          321 SFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~  338 (343)
                      ++++.+..|+.++.++..
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            999999999988877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.6e-40  Score=319.10  Aligned_cols=311  Identities=17%  Similarity=0.208  Sum_probs=270.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+.+            ...+..+.+|...|++++|+  +++|++++.||.|++||+.+++.+..+.
T Consensus       629 ~l~s~~~d~~i~vw~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          629 RIASCGADKTLQVFKAET------------GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             EEEEEETTSCEEEEETTT------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCC------------CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            478999999999999987            35667788999999999998  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...|.+++|+|+++   ..++++|+.|+.|++||+.+++++..+.+|...|.+++|+|+++++++++.||.|++||+
T Consensus       697 ~~-~~~v~~~~~~~~~~---~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~  772 (1249)
T 3sfz_A          697 EH-SEQVNCCHFTNKSN---HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV  772 (1249)
T ss_dssp             CC-SSCEEEEEECSSSS---CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred             CC-CCcEEEEEEecCCC---ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence            99 99999999999542   268999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEEcC--------------CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec--CCcceEEeeec-CC
Q 019326          160 VRGRRSFYHKIG--------------KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD--GKKRILCAAPG-EN  222 (343)
Q Consensus       160 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~-~~  222 (343)
                      ++++........              ..+.+++|+|++..++++.++.+.+||+.++.....+.  |...+.+++|+ ++
T Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~  852 (1249)
T 3sfz_A          773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD  852 (1249)
T ss_dssp             GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST
T ss_pred             CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC
Confidence            998766555432              26778999999999999999999999999998887775  78899999999 46


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCc-
Q 019326          223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLP-  301 (343)
Q Consensus       223 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-  301 (343)
                      .++++++.||.|++||+.++..+..+. +|...|.+++|+|++.         +|++++.||.|++|++.+........ 
T Consensus       853 ~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~---------~l~s~s~dg~v~vw~~~~~~~~~~~~~  922 (1249)
T 3sfz_A          853 HLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGS---------SFLTASDDQTIRVWETKKVCKNSAIVL  922 (1249)
T ss_dssp             TEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCC---------EEEEEeCCCeEEEEEccccceeeeecc
Confidence            799999999999999999999999999 9999999999999887         99999999999999987532111100 


Q ss_pred             --------------------------------ccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          302 --------------------------------LAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       302 --------------------------------~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                                                      .........+.+++++|++.+++.+..++.+..++..
T Consensus       923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~  991 (1249)
T 3sfz_A          923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP  991 (1249)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred             cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence                                            0011224569999999999999999999877665543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-39  Score=280.22  Aligned_cols=266  Identities=16%  Similarity=0.232  Sum_probs=228.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .+++++.|+.|++|++..       +.   ...... ..|...|++++|+  +++|++|+.||.|++||+.+++.+..+.
T Consensus       105 ~l~~~~~d~~v~lw~~~~-------~~---~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A          105 NVVAVALERNVYVWNADS-------GS---VSALAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             SEEEEEETTEEEEEETTT-------CC---EEEEEE-CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CEEEEECCCeEEEeeCCC-------Cc---EeEeee-cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence            478999999999999987       22   112222 2389999999998  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-CcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .| ...|.+++|++       +.|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       174 ~~-~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          174 GH-QARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             CC-SSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CC-CCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence            99 99999999953       589999999999999998 5667888899999999999999999999999999999999


Q ss_pred             ccCCceeEEE-EcCCcceEEEEeCCCCEEEE-Ee---CCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEE--EeC
Q 019326          159 LVRGRRSFYH-KIGKEASLIKFDGSGEKFFM-VT---EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFT--GGE  230 (343)
Q Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~---~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~--~~~  230 (343)
                      +++++..... .+...+.+++|+|++..+++ +.   ++.+++||+.+++.+..+.+...+.+++|++ +.++++  |+.
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  325 (401)
T 4aez_A          246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP  325 (401)
T ss_dssp             TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred             CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence            9998877655 45678999999997765544 44   9999999999999999999999999999994 567777  558


Q ss_pred             CCcEEEEECCCCceeE--EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          231 DRSITAWDTNSGKVAY--CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      ||.|++||+.+++...  .+. +|...|.+++|+|++.         +|++++.||.|++|++.++..
T Consensus       326 dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~---------~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          326 DNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGR---------ILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             TCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSS---------EEEEECTTSEEEEEECCC---
T ss_pred             CCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCcc
Confidence            9999999999865444  456 8999999999999887         999999999999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-39  Score=267.60  Aligned_cols=243  Identities=16%  Similarity=0.224  Sum_probs=206.4

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC--CeeeeEeccCCCCCeEEEEEeCC--CCCCCCceEEEeeCC
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST--SSSLGAIHHHESSSVTSLAFYTP--QNLSVPRNLFSTSAD  109 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~s~~~d  109 (343)
                      ..+.+|.+.|++++|+  +++|++|+.|++|++||+.+  .+.+..+.+| ..+|.+++|+++  +     ++|++|+.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~~g-----~~l~s~s~D   76 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFG-----TILASCSYD   76 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-SSCEEEEEECCGGGC-----SEEEEEETT
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-cCCeEEEEecCCCcC-----CEEEEEcCC
Confidence            3567899999999999  89999999999999999974  4678889999 999999999864  5     699999999


Q ss_pred             CeEEEEECCCcc--eeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCce---eEEEEcCCcceEEEEeCC
Q 019326          110 GFVSIFDADPFV--LLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRR---SFYHKIGKEASLIKFDGS  182 (343)
Q Consensus       110 g~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~  182 (343)
                      ++|++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++..   .....+...+.+++|+|+
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999998764  56677889999999999997  88999999999999999987642   233445678999999997


Q ss_pred             -------------CCEEEEE-eCCcEEEEEcccce----eEEEec-CCcceEEeeecCC----CeEEEEeCCCcEEEEEC
Q 019326          183 -------------GEKFFMV-TEEKVGIHQAEDAK----LLCELD-GKKRILCAAPGEN----GVLFTGGEDRSITAWDT  239 (343)
Q Consensus       183 -------------~~~~~~~-~~~~i~~~d~~~~~----~~~~~~-~~~~i~~~~~~~~----~~l~~~~~dg~i~i~d~  239 (343)
                                   +++++++ .|+.|++||+++++    ....+. |...|.+++|++.    .+|++++.|++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                         4688888 89999999998765    455565 8889999999964    68999999999999999


Q ss_pred             CCCc---eeEEec-ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          240 NSGK---VAYCIE-DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       240 ~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++..   ....+. ..|...|.+++|+|++.         +|++++.||.|++|+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---------VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSTTSCCEEEESSSSCCSSCEEEEEECSSSC---------CEEEEETTSCEEEEEECT
T ss_pred             CCCCCccceeeeecccCCCcEEEEEECCCCC---------EEEEEcCCCcEEEEEECC
Confidence            8753   122331 26888999999999987         999999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=274.57  Aligned_cols=286  Identities=13%  Similarity=0.106  Sum_probs=249.7

Q ss_pred             eeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC
Q 019326           31 TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA  108 (343)
Q Consensus        31 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~  108 (343)
                      .......+.+|.++|++++|+  +++|++++.||.|++||+.+++.+..+..| ...|.+++|+|++     ++|++++.
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-----~~l~s~~~   94 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-TGTIWSIDVDCFT-----KYCVTGSA   94 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTS-----SEEEEEET
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-CCcEEEEEEcCCC-----CEEEEEeC
Confidence            345567788999999999998  889999999999999999999999999999 9999999999998     89999999


Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCceeE------------EEEcC
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----DCLAMVNLVRGRRSF------------YHKIG  171 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~------------~~~~~  171 (343)
                      ||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+     +.|++||+.......            ...+.
T Consensus        95 dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             CCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            9999999999999998888 88899999999999999999999     999999998764221            11122


Q ss_pred             C--cceEEEEeCCCCEEEEE-eCCcEEEEEccc-ceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCcee
Q 019326          172 K--EASLIKFDGSGEKFFMV-TEEKVGIHQAED-AKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       172 ~--~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~-~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                      .  .+.+++|+|+++.++++ .++.|.+||+++ .+....+. |...+.+++|+ ++.+|++++.||.|++||+++++.+
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence            2  78999999999999999 899999999998 67777776 78899999998 4679999999999999999999999


Q ss_pred             EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC--------------cEEEEeccCccccCCCcccccccccce
Q 019326          246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG--------------VICVWDVRMAIKEKPLPLAEAKTNSRL  311 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~i  311 (343)
                      ..+.  +...+..++|+|++.         ++++++.++              .+++||+.++.....    ...+...|
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~v  318 (369)
T 3zwl_B          254 KKYE--TDCPLNTAVITPLKE---------FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR----VQGHFGPL  318 (369)
T ss_dssp             EEEE--CSSCEEEEEECSSSS---------EEEEEECCC-------------CEEEEEETTTCCEEEE----EECCSSCE
T ss_pred             eeec--CCCCceeEEecCCCc---------eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh----eecccCcE
Confidence            8887  888999999999988         999999988              899999988642221    12345679


Q ss_pred             eEEEcCCCCceeccccCCCCCCCcccc
Q 019326          312 TCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       312 ~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      .+++|+|++.+++.+..|+.++.++..
T Consensus       319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          319 NTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            999999999999999999987766543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.7e-39  Score=278.29  Aligned_cols=264  Identities=17%  Similarity=0.226  Sum_probs=227.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++.+.|++|+|||..+       +   +......+.+|...|++|+|+  +++|++|+.||.|++||+.+++.+..+.+
T Consensus       118 ~lAvgld~tV~lWd~~t-------g---~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          118 VLAVALDNSVYLWSASS-------G---DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             EEEEEETTEEEEEETTT-------C---CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEeCCEEEEEECCC-------C---CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence            34445699999999987       2   234455667889999999999  89999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      | ...+.++.+++       ..|++|+.|+.+++||... ...+..+.+|...+..+.++|+++++++++.|+.+++|+.
T Consensus       188 h-~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          188 H-SARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             C-SSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             C-CCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence            9 89999998864       5899999999999999875 4466788899999999999999999999999999999999


Q ss_pred             cCCcee-----EEEEcCCcceEEEEeCCCCEE-EEE---eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEe
Q 019326          160 VRGRRS-----FYHKIGKEASLIKFDGSGEKF-FMV---TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       160 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~  229 (343)
                      .+++..     ....+...+..++|+|.+..+ +++   .|+.|++||+.+++....+.+...+.++.++ +++.+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence            877532     233455789999999976644 443   5899999999999999999988899999988 456666544


Q ss_pred             --CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          230 --EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       230 --~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                        .|+.|++||+.+++++.++. +|...|++++|+|++.         +|+||+.|++|+|||+...
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~---------~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA---------TVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS---------CEEEEETTTEEEEECCSCS
T ss_pred             ecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC---------EEEEEecCCeEEEEECCCC
Confidence              79999999999999999999 9999999999999887         9999999999999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.1e-40  Score=280.34  Aligned_cols=266  Identities=16%  Similarity=0.187  Sum_probs=223.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec------CceEEEeeCCCeEEEEEcCCCeeee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS------GTAAASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      +++++.++.|++|++..       +.............|...|++++|+      +.+|++|+.||.|++||+.+++.+.
T Consensus        37 ~~~~~~~~~v~vw~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  109 (366)
T 3k26_A           37 VFATVGSNRVTLYECHS-------QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK  109 (366)
T ss_dssp             EEEEEETTEEEEEEECG-------GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE
T ss_pred             EEEECCCCEEEEEEcCC-------CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee
Confidence            77888888999999986       3333222223333478899999998      2489999999999999999999999


Q ss_pred             EeccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCCeEEEEECCCcceeeee---eeccccEEEEEEecCCCEEEEEeCCC
Q 019326           77 AIHHHESSSVTSLAFYT-PQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV---KVHKKGVNDLAVHHSGKLALTVGRDD  152 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d~  152 (343)
                      .+..| ...|.+++|+| ++     ++|++++.||.|++||+++++.+..+   ..|...|.+++|+|++++|++++.||
T Consensus       110 ~~~~~-~~~i~~~~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  183 (366)
T 3k26_A          110 HYVGH-GNAINELKFHPRDP-----NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH  183 (366)
T ss_dssp             EEESC-CSCEEEEEECSSCT-----TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eecCC-CCcEEEEEECCCCC-----CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence            99989 99999999999 66     79999999999999999999988888   67999999999999999999999999


Q ss_pred             eEEEEEccCCceeEEEE-----------------------------cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc
Q 019326          153 CLAMVNLVRGRRSFYHK-----------------------------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA  202 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~  202 (343)
                      .|++||+++++......                             +...+.+++|+  +++++++ .++.|++||+.+.
T Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            99999998765432111                             56778999998  6788888 8999999999876


Q ss_pred             ee--------------EEEec-CCcceEEeeec-C--CCeEEEEeCCCcEEEEECCCCce----eEEecccc--cccEEE
Q 019326          203 KL--------------LCELD-GKKRILCAAPG-E--NGVLFTGGEDRSITAWDTNSGKV----AYCIEDAH--SARVKG  258 (343)
Q Consensus       203 ~~--------------~~~~~-~~~~i~~~~~~-~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~h--~~~v~~  258 (343)
                      ..              +..+. |...+.+++|+ +  +++|++|+.||.|++||+.+++.    ...+. +|  ...|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~  340 (366)
T 3k26_A          262 EDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQ  340 (366)
T ss_dssp             TCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEE
T ss_pred             cccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc-ccccCCceEE
Confidence            43              44444 67788889888 4  68999999999999999998763    34666 66  799999


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          259 IVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++|+|++.         +|++++.||.|++||+.+
T Consensus       341 ~~~s~~~~---------~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          341 TSFSRDSS---------ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSS---------EEEEEETTSEEEEEEC--
T ss_pred             EEeCCCCC---------eEEEEeCCCEEEEEEecC
Confidence            99999887         999999999999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-39  Score=272.13  Aligned_cols=265  Identities=13%  Similarity=0.136  Sum_probs=237.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+..            .+.+..+.+|...|++++|+  +++|++++.||.|++||+.+++.+..+.
T Consensus        46 ~l~~~~~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  113 (369)
T 3zwl_B           46 LLFSCSKDSSASVWYSLN------------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK  113 (369)
T ss_dssp             EEEEEESSSCEEEEETTT------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCC------------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            488999999999999876            35567788999999999999  8899999999999999999999998888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEECCCcc-----------eeeeeeeccc--cEEEEEEecC
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFDADPFV-----------LLTSVKVHKK--GVNDLAVHHS  141 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~~~~~  141 (343)
                       + ...|.+++|+|++     +++++++.+     +.|++||+....           ....+..|..  .+.+++|+|+
T Consensus       114 -~-~~~v~~~~~~~~~-----~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          114 -S-PVPVKRVEFSPCG-----NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             -C-SSCEEEEEECTTS-----SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             -c-CCCeEEEEEccCC-----CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence             5 6899999999999     899999998     999999986543           3444555666  8999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccC-CceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEee
Q 019326          142 GKLALTVGRDDCLAMVNLVR-GRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAA  218 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~  218 (343)
                      +++|++++.||.|++||+++ .+...... +...+.+++|+|++++++++ .++.|++||+++++....+.+...+.+++
T Consensus       187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  266 (369)
T 3zwl_B          187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV  266 (369)
T ss_dssp             GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEE
Confidence            99999999999999999998 55555444 46789999999999999999 89999999999999999999999999999


Q ss_pred             ec-CCCeEEEEeCCC--------------cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          219 PG-ENGVLFTGGEDR--------------SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       219 ~~-~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      ++ ++.++++++.++              .+++||..+++.+..+. +|...|++++|+|++.         +|++++.|
T Consensus       267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------~l~s~~~d  336 (369)
T 3zwl_B          267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQGT---------SYASGGED  336 (369)
T ss_dssp             ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS---------EEEEEETT
T ss_pred             ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCCC---------EEEEEcCC
Confidence            98 467888988888              89999999999999998 9999999999999887         99999999


Q ss_pred             CcEEEEeccCcc
Q 019326          284 GVICVWDVRMAI  295 (343)
Q Consensus       284 g~i~vwd~~~~~  295 (343)
                      |.|++|+++.+.
T Consensus       337 g~v~iw~~~~~~  348 (369)
T 3zwl_B          337 GFIRLHHFEKSY  348 (369)
T ss_dssp             SEEEEEEECHHH
T ss_pred             CeEEEEECcccc
Confidence            999999999764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.8e-40  Score=283.86  Aligned_cols=257  Identities=17%  Similarity=0.255  Sum_probs=225.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .|++|+.||.|++||+.+            .+....+.+|.++|++++|++++|++|+.||.|++||+.+++.+..+..|
T Consensus       145 ~l~~g~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          145 KIVSGLRDNTIKIWDKNT------------LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             EEEEEESSSCEEEEESSS------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             EEEEEeCCCeEEEEeCCC------------CeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence            478999999999999886            34567788999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee---eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL---TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                       ...|.+++|++       ..+++|+.||.|++||+.+++..   ..+.+|...|.+++|  +++++++++.||.|++||
T Consensus       213 -~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd  282 (435)
T 1p22_A          213 -CEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN  282 (435)
T ss_dssp             -CSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             -CCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence             99999999973       48999999999999999887665   667789999999999  577999999999999999


Q ss_pred             ccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEE
Q 019326          159 LVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSIT  235 (343)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~  235 (343)
                      +++++.+.... +...+.++.+  ++..++++ .|+.|++||+++++.+..+. |...+.++.+ +++++++|+.||.|+
T Consensus       283 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~  359 (435)
T 1p22_A          283 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIK  359 (435)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEE
T ss_pred             CCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEE
Confidence            99998877665 4567888888  46788888 89999999999999998888 8889999999 788999999999999


Q ss_pred             EEECCCCc---------eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          236 AWDTNSGK---------VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       236 i~d~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      +||+.+++         .+..+. +|...|.+++|  ++.         +|++++.||.|++||+.+..
T Consensus       360 vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~---------~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          360 VWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEF---------QIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSS---------CEEECCSSSEEEEEC-----
T ss_pred             EEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCC---------EEEEEeCCCEEEEEECCCCC
Confidence            99997665         788888 99999999999  444         89999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4e-39  Score=282.37  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=239.6

Q ss_pred             EeEEecCCCCC-eEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           34 QLFSYPAHLSP-ITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        34 ~~~~~~~h~~~-v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      ....+.+|... +.++.+++++|++|+.||.|++||+.+++.+..+.+| ...|.+++|+|++      .|++|+.||+|
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~------~l~s~s~dg~i  185 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG------ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSTT------EEEEEETTSCE
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-CcCEEEEEEcCCC------EEEEEeCCCCE
Confidence            44577899888 4788888999999999999999999999999999999 9999999999876      89999999999


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEe--cCCCEEEEEeCCCeEEEEEccCCceeEE----------------------E
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVH--HSGKLALTVGRDDCLAMVNLVRGRRSFY----------------------H  168 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~----------------------~  168 (343)
                      ++||+++++.+..+.+|...|.+++|+  +++.++++++.|+.|++||++++.....                      .
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999999999999999999999999998  5778999999999999999988764321                      1


Q ss_pred             EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCcee
Q 019326          169 KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                      ...+.....++++++++++++ .|+.|++||+++++.+..+. |...+.++++++ ++++++|+.||.|++||+++++.+
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            122333445567889999999 89999999999999998887 788999999984 679999999999999999999999


Q ss_pred             EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecc
Q 019326          246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      ..+. +|...|.++.+++  .         +|++++.||.|++||++++.     ..........+..+++++++.+++.
T Consensus       346 ~~~~-~h~~~v~~~~~~~--~---------~l~s~s~dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~  408 (464)
T 3v7d_B          346 YTLQ-GHTALVGLLRLSD--K---------FLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDNILVS  408 (464)
T ss_dssp             EEEC-CCSSCEEEEEECS--S---------EEEEEETTSEEEEEETTTCC-----EEEEEECTTCCCEEEEEECSSEEEE
T ss_pred             EEEe-CCCCcEEEEEEcC--C---------EEEEEeCCCcEEEEECCCCc-----eeeeecCCCCccEEEEEeCCCEEEE
Confidence            9999 9999999999974  3         99999999999999999753     2333445566888899999998888


Q ss_pred             ccCCCCCCCccc
Q 019326          326 QIGDSAPKGEEK  337 (343)
Q Consensus       326 ~~~~~~~~~~~~  337 (343)
                      +. ++.++.++.
T Consensus       409 ~~-dg~i~iwd~  419 (464)
T 3v7d_B          409 GS-ENQFNIYNL  419 (464)
T ss_dssp             EE-TTEEEEEET
T ss_pred             ec-CCeEEEEEC
Confidence            87 666655544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.9e-39  Score=275.55  Aligned_cols=263  Identities=14%  Similarity=0.104  Sum_probs=221.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|++|+.||.|++||+...       .   ........+|...|.+++|+   +++|++++.|+.|++||+.+ +.+..+
T Consensus        88 ~l~s~~~dg~i~iwd~~~~-------~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~  156 (383)
T 3ei3_B           88 TVAVGSKGGDIILWDYDVQ-------N---KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVF  156 (383)
T ss_dssp             EEEEEEBTSCEEEEETTST-------T---CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCc-------c---cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEE
Confidence            5899999999999999862       1   22333445799999999998   47999999999999999985 555555


Q ss_pred             ccCC--CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCCeEE
Q 019326           79 HHHE--SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDDCLA  155 (343)
Q Consensus        79 ~~~~--~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~  155 (343)
                      ..+.  ...|.+++|+|++     ++|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|+
T Consensus       157 ~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  230 (383)
T 3ei3_B          157 AKTDSWDYWYCCVDVSVSR-----QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK  230 (383)
T ss_dssp             ECCCCSSCCEEEEEEETTT-----TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eccCCCCCCeEEEEECCCC-----CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence            5441  4789999999998     89999999999999999 5678899999999999999999998 999999999999


Q ss_pred             EEEccC----CceeEEEEcCCcceEEEEeC-CCCEEEEE-eCCcEEEEEcccceeEEEec-C-----------------C
Q 019326          156 MVNLVR----GRRSFYHKIGKEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDAKLLCELD-G-----------------K  211 (343)
Q Consensus       156 ~wd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~-----------------~  211 (343)
                      +||+++    +.......+...+.+++|+| ++.+++++ .|+.|++||+++++....+. +                 .
T Consensus       231 iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  310 (383)
T 3ei3_B          231 LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM  310 (383)
T ss_dssp             EEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred             EEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence            999998    66666677889999999999 99999999 89999999999887655554 2                 1


Q ss_pred             cceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc--ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          212 KRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA--HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       212 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      ..+..+++++++.+ +|+.||.|++||+.+++.+..+. +  |...+..++|+|++.         +|++++ ||.|++|
T Consensus       311 ~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~-~~~~~~~~~~~~~s~~g~---------~l~s~s-d~~i~iw  378 (383)
T 3ei3_B          311 YDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLR-DPNAAGIISLNKFSPTGD---------VLASGM-GFNILIW  378 (383)
T ss_dssp             SSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEEC-BTTBCSCCCEEEECTTSS---------EEEEEE-TTEEEEE
T ss_pred             CCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeec-CCCCCceEEEEEEecCcc---------EEEEec-CCcEEEE
Confidence            34445666644333 78899999999999999999998 5  567788889999887         999997 9999999


Q ss_pred             eccC
Q 019326          290 DVRM  293 (343)
Q Consensus       290 d~~~  293 (343)
                      |+++
T Consensus       379 ~~~~  382 (383)
T 3ei3_B          379 NRED  382 (383)
T ss_dssp             ECC-
T ss_pred             ecCC
Confidence            9975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=265.15  Aligned_cols=258  Identities=16%  Similarity=0.191  Sum_probs=226.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC---eeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS---SSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~   76 (343)
                      .|++|+.||.|++||+..            ......+..|...|.+++|+  +++|++++.||.|++|++...   +.+.
T Consensus        31 ~l~s~~~dg~v~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           31 KVASVSRDGTVRLWSKDD------------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             EEEEEETTSEEEEEEESS------------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred             EEEEEEcCCcEEEEECCC------------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence            589999999999999976            34556667899999999999  889999999999999998764   5677


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLA  155 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~  155 (343)
                      .+..| ...|.++.|.  +     +++++++.||.|++||  .++....+..|...+.+++|.| +++++++++.|+.|+
T Consensus        99 ~~~~~-~~~i~~~~~~--~-----~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  168 (313)
T 3odt_A           99 TLIGH-QGNVCSLSFQ--D-----GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK  168 (313)
T ss_dssp             EECCC-SSCEEEEEEE--T-----TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             chhhc-ccCEEEEEec--C-----CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence            78888 8999999994  3     5899999999999999  6678888999999999999998 889999999999999


Q ss_pred             EEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCC
Q 019326          156 MVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGED  231 (343)
Q Consensus       156 ~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d  231 (343)
                      +||..  +......  +...+.+++|+|++. ++++ .++.+++||+++++.+..+. |..++.+++|++++.+++++.|
T Consensus       169 i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  245 (313)
T 3odt_A          169 LWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED  245 (313)
T ss_dssp             EEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT
T ss_pred             EEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC
Confidence            99943  3333333  567899999999999 5555 99999999999999998887 8899999999977689999999


Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      |.|++||+++++.+..+. .|...|.+++|+|++.          +++++.||.|++||++++.
T Consensus       246 g~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~----------~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD----------IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             SEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC----------EEEEETTSCEEEEESCGGG
T ss_pred             CEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC----------EEEEeCCCcEEEEeCCCCc
Confidence            999999999999999998 8999999999999874          6679999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.2e-39  Score=272.26  Aligned_cols=273  Identities=16%  Similarity=0.153  Sum_probs=223.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe-
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI-   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-   78 (343)
                      .|++|+.|+.|++||+..       +   +......+.+|...|++++|+  +++|++++.||.|++||+.+++....+ 
T Consensus        22 ~l~~~~~d~~v~i~~~~~-------~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           22 QIAICPNNHEVHIYEKSG-------N---KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             EEEEECSSSEEEEEEEET-------T---EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCC-------C---cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence            478899999999999987       1   234677788999999999999  889999999999999999988755444 


Q ss_pred             -ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce---eee-eeeccccEEEEEEecCCCEEEEEeCCCe
Q 019326           79 -HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL---LTS-VKVHKKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        79 -~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                       ..| ...|.+++|+|++     ++|++++.|+.|++||++..+.   ... ...|...|.+++|+|++++|++++.||.
T Consensus        92 ~~~~-~~~v~~~~~~~~~-----~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  165 (372)
T 1k8k_C           92 ILRI-NRAARCVRWAPNE-----KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  165 (372)
T ss_dssp             CCCC-SSCEEEEEECTTS-----SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eecC-CCceeEEEECCCC-----CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence             556 8899999999998     8999999999999999987653   223 3567889999999999999999999999


Q ss_pred             EEEEEcc------------------CCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCc
Q 019326          154 LAMVNLV------------------RGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKK  212 (343)
Q Consensus       154 i~~wd~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~  212 (343)
                      |++||++                  .++..... .+...+.+++|+|++++++++ .|+.|++||+++++.+..+. +..
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  245 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  245 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence            9999964                  45555444 345779999999999999999 89999999999999988887 667


Q ss_pred             ceEEeeecCCCeEEEEeCCCcEEEEECCC--Cc--------------------------------ee------EEecccc
Q 019326          213 RILCAAPGENGVLFTGGEDRSITAWDTNS--GK--------------------------------VA------YCIEDAH  252 (343)
Q Consensus       213 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~--------------------------------~~------~~~~~~h  252 (343)
                      ++.+++|++++.+++++.|+.|++|++.+  ++                                ..      ..+..+|
T Consensus       246 ~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  325 (372)
T 1k8k_C          246 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH  325 (372)
T ss_dssp             CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred             CeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccc
Confidence            99999999554444444999999999987  42                                00      2232389


Q ss_pred             cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          253 SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       253 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ..+|++++|++...     .++.+|+|++.||.|++||++++.
T Consensus       326 ~~~v~~~~~~~~~g-----~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          326 KNSVSQISVLSGGK-----AKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSCEEEEEEEESTT-----TSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cCCcceeEEecCCC-----cceeeEEEecCCCceEEEEecChh
Confidence            99999999875531     000299999999999999998764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=264.23  Aligned_cols=279  Identities=14%  Similarity=0.131  Sum_probs=236.1

Q ss_pred             eEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      .+....+.+|.++|++++|. +++|++|+.||.|++||+.+++....+..| ...|.+++|+|++     ++|++++.||
T Consensus         8 ~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~-----~~l~~~~~dg   81 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEK-----ELLLFGGKDT   81 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTT-----TEEEEEETTS
T ss_pred             HHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCC-----CEEEEecCCC
Confidence            56778889999999999998 889999999999999999999999999988 9999999999998     8999999999


Q ss_pred             eEEEEECCCc---ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeC-CCCE
Q 019326          111 FVSIFDADPF---VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDG-SGEK  185 (343)
Q Consensus       111 ~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~-~~~~  185 (343)
                      .|++|++...   +.+..+..|...|.+++|  +++++++++.|+.|++||  .++..... .+...+..+.+.| ++..
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            9999998543   567788899999999999  467999999999999999  44444433 4567888999988 8889


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      ++++ .++.+++||.  .+....+.  +...+.++++++++.+++++.||.|++||+++++.+..+. +|...|++++|+
T Consensus       158 l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~  234 (313)
T 3odt_A          158 FLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLL  234 (313)
T ss_dssp             EEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEC
T ss_pred             EEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEe
Confidence            9988 8999999994  44444444  8889999999976669999999999999999999999998 999999999999


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      |++          .|++++.||.|++||++++......    ..+...|.++++++++.++ .+..++.++.++..
T Consensus       235 ~~~----------~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~  295 (313)
T 3odt_A          235 PNG----------DIVSCGEDRTVRIWSKENGSLKQVI----TLPAISIWSVDCMSNGDII-VGSSDNLVRIFSQE  295 (313)
T ss_dssp             TTS----------CEEEEETTSEEEEECTTTCCEEEEE----ECSSSCEEEEEECTTSCEE-EEETTSCEEEEESC
T ss_pred             cCC----------CEEEEecCCEEEEEECCCCceeEEE----eccCceEEEEEEccCCCEE-EEeCCCcEEEEeCC
Confidence            987          5889999999999999987422211    1234579999999999855 57778877666543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-39  Score=274.72  Aligned_cols=285  Identities=13%  Similarity=0.077  Sum_probs=231.3

Q ss_pred             eEEeEEecCCCCCeEEEEec--C-ceEEEeeCCCeEEEEEcCCCeeeeEec--cCCCCCeEEEEEeC-CCCCCCCceEEE
Q 019326           32 LTQLFSYPAHLSPITTVAVS--G-TAAASGGTDDTIHLYDLSTSSSLGAIH--HHESSSVTSLAFYT-PQNLSVPRNLFS  105 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~~~~-~~~~~~~~~l~s  105 (343)
                      ......+.+|...|++++|+  + ++|++|+.||.|++||+.+++....+.  +| ...|.+++|+| ++     ++|++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-----~~l~s  136 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNT-----NQLFV  136 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCST-TCBEEEEEEETTEE-----EEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCc-CCceeEEEeCCCCC-----CEEEE
Confidence            45566788999999999999  5 799999999999999999888777775  57 89999999999 55     79999


Q ss_pred             eeCCCeEEEEECCCcceeeeeeecc---ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCC
Q 019326          106 TSADGFVSIFDADPFVLLTSVKVHK---KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGS  182 (343)
Q Consensus       106 ~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      ++.|+.|++||+.+ +.+..+..+.   ..|.+++|+|++++|++++.|+.|++||++.........+...+.+++|+|+
T Consensus       137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSS
T ss_pred             EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCC
Confidence            99999999999986 5556665444   7899999999999999999999999999954333334446688999999999


Q ss_pred             CC-EEEEE-eCCcEEEEEccc----ceeEEEecCCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEeccccc-
Q 019326          183 GE-KFFMV-TEEKVGIHQAED----AKLLCELDGKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS-  253 (343)
Q Consensus       183 ~~-~~~~~-~~~~i~~~d~~~----~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~-  253 (343)
                      ++ +++++ .|+.|++||+++    +..+..+.|...+.+++|++  +.+|++++.|+.|++||+++++.+..+. .|. 
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~  294 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII-IHPH  294 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE-ECCB
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc-cccc
Confidence            99 88888 899999999998    67788888999999999986  5799999999999999999988776665 442 


Q ss_pred             ------c----------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          254 ------A----------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       254 ------~----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                            .          .+..+++++++.         +  +++.||.|++||+.++.....  +....+...+.+++|+
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~---------~--s~s~d~~i~iwd~~~~~~~~~--l~~~~~~~~~~~~~~s  361 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQ---------L--LLNDKRTIDIYDANSGGLVHQ--LRDPNAAGIISLNKFS  361 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTT---------T--CTTCCCCEEEEETTTCCEEEE--ECBTTBCSCCCEEEEC
T ss_pred             cccccccceEEeccCCCCceEEEecCCcc---------c--ccCCCCeEEEEecCCCceeee--ecCCCCCceEEEEEEe
Confidence                  2          333355555553         4  888999999999998753221  1112245668888999


Q ss_pred             CCCceeccccCCCCCCCcccc
Q 019326          318 STKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      +++.+++.+. |+.++.++..
T Consensus       362 ~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          362 PTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             TTSSEEEEEE-TTEEEEEECC
T ss_pred             cCccEEEEec-CCcEEEEecC
Confidence            9999999985 7777766543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-39  Score=274.40  Aligned_cols=284  Identities=11%  Similarity=0.058  Sum_probs=239.0

Q ss_pred             cCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           39 PAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ..|.++|++++|+  +++|++++.|+.|++||+.+++  .+..+..| ...|.+++|+|++     ++|++++.||.|++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~-----~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDS-----NRIVTCGTDRNAYV   78 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTT-----TEEEEEETTSCEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCC-----CEEEEEcCCCeEEE
Confidence            4589999999999  8899999999999999999987  88889888 8999999999998     89999999999999


Q ss_pred             EECCCcceeeee--eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce---eEEE--EcCCcceEEEEeCCCCEEE
Q 019326          115 FDADPFVLLTSV--KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR---SFYH--KIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       115 wd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~  187 (343)
                      ||+.+++....+  ..|...|.+++|+|++++|++++.|+.|++||++.+..   ....  .+...+.+++|+|++++++
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            999887654443  56889999999999999999999999999999998773   2222  2357799999999999999


Q ss_pred             EE-eCCcEEEEEc------------------ccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeE
Q 019326          188 MV-TEEKVGIHQA------------------EDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       188 ~~-~~~~i~~~d~------------------~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      ++ .++.+++||+                  ..++.+..+. |...+.+++|++ +++|++++.||.|++||+++++.+.
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            99 8999999995                  4667777775 788999999984 5699999999999999999999999


Q ss_pred             EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC--ccc----------------------------
Q 019326          247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM--AIK----------------------------  296 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~----------------------------  296 (343)
                      .+. .|..+|.+++|+|++.         +|+++ .|+.|++|++++  +..                            
T Consensus       239 ~~~-~~~~~v~~~~~~~~~~---------~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          239 TLA-SETLPLLAVTFITESS---------LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             EEE-CSSCCEEEEEEEETTE---------EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             EEc-cCCCCeEEEEEecCCC---------EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            999 9999999999999886         77766 899999999988  310                            


Q ss_pred             -cCCC------cccccccccceeEEEcC-CCC---ceeccccCCCCCCCccccC
Q 019326          297 -EKPL------PLAEAKTNSRLTCLAGS-STK---SFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       297 -~~~~------~~~~~~~~~~i~~~~~s-~~~---~~~~~~~~~~~~~~~~~~~  339 (343)
                       ....      ......+...|+++++. +++   .+++.+..|+.++.++...
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence             0000      11112456689999965 666   9999999999888776543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.7e-39  Score=271.64  Aligned_cols=265  Identities=13%  Similarity=0.163  Sum_probs=224.4

Q ss_pred             eEEecc---CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-C----ceEEEeeCCCeEEEEEcCCCe-
Q 019326            3 LIAGSY---EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-G----TAAASGGTDDTIHLYDLSTSS-   73 (343)
Q Consensus         3 l~~g~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~----~~l~s~~~dg~i~iwd~~~~~-   73 (343)
                      +++|+.   ||.|++||+..       ++   ...... .+|..+|++++|+ .    ++|++|+.||.|++||+.+++ 
T Consensus        34 ~~~~s~~~~d~~v~iw~~~~-------~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  102 (357)
T 3i2n_A           34 VTMGNFARGTGVIQLYEIQH-------GD---LKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM  102 (357)
T ss_dssp             EEEEC--CCCEEEEEEEECS-------SS---EEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS
T ss_pred             EEecCccCCCcEEEEEeCCC-------Cc---ccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc
Confidence            456665   89999999987       22   222222 2689999999998 3    889999999999999999988 


Q ss_pred             eeeEeccCCCCCeEEEEE------eCCCCCCCCceEEEeeCCCeEEEEECCCcc-eeeeeeeccc----cEEEEE----E
Q 019326           74 SLGAIHHHESSSVTSLAF------YTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVKVHKK----GVNDLA----V  138 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~i~----~  138 (343)
                      .+..+..| ...|.++.|      +|++     ++|++++.||.|++||+.+++ .+..+..|.+    .+.+++    |
T Consensus       103 ~~~~~~~~-~~~v~~~~~~~~~~~s~~~-----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  176 (357)
T 3i2n_A          103 PVYSVKGH-KEIINAIDGIGGLGIGEGA-----PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY  176 (357)
T ss_dssp             CSEEECCC-SSCEEEEEEESGGGCC-CC-----CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred             cEEEEEec-ccceEEEeeccccccCCCc-----cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence            88889999 999999965      5666     799999999999999998876 6777776655    889998    7


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeC---CCCEEEEE-eCCcEEEEEcccceeEEEe------
Q 019326          139 HHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDG---SGEKFFMV-TEEKVGIHQAEDAKLLCEL------  208 (343)
Q Consensus       139 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~i~~~d~~~~~~~~~~------  208 (343)
                      +|+++++++++.||.|++||+++++......+...+.+++|+|   ++..++++ .++.|++||+++++....+      
T Consensus       177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  256 (357)
T 3i2n_A          177 NQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK  256 (357)
T ss_dssp             C-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence            8899999999999999999999999888888889999999999   89999999 8999999999987765444      


Q ss_pred             cCCcceEEeeecCC-C-eEEEEeCCCcEEEEECCCC-------------------ceeEEecccccccEEEEEEEecCCC
Q 019326          209 DGKKRILCAAPGEN-G-VLFTGGEDRSITAWDTNSG-------------------KVAYCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       209 ~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      .|...|.+++|++. . ++++++.||.|++||++++                   +.+..+. +|...|++++|+|++. 
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-  334 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKR-  334 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSST-
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCC-
Confidence            48889999999964 4 7999999999999999754                   3566677 8999999999999987 


Q ss_pred             CCCCCCCeEEE-EEcCCCcEEEEeccCc
Q 019326          268 GSTAENPYLVA-SASSDGVICVWDVRMA  294 (343)
Q Consensus       268 ~~~~~~~~~l~-s~~~dg~i~vwd~~~~  294 (343)
                              +|+ +++.||.|++||+.+.
T Consensus       335 --------~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          335 --------GLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             --------TEEEEEETTSEEEEEEECC-
T ss_pred             --------eEEEEecCCCcEEEEECCCc
Confidence                    777 8999999999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8e-38  Score=260.47  Aligned_cols=264  Identities=17%  Similarity=0.228  Sum_probs=223.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++.+.|++|+|||+.+       ++   ......+.+|...|++++|+  +++|++|+.||.|++||+.+++.+..+.+
T Consensus        38 ~lAvg~D~tV~iWd~~t-------g~---~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           38 VLAVALDNSVYLWSASS-------GD---ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             EEEEEETTEEEEEETTT-------CC---EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCEEEEEECCC-------CC---EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            34555699999999987       22   33444566889999999999  89999999999999999999999999999


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      | ...+.++.+.+       ..+++++.++.+++|+.... ..+..+.+|...+..+.+.++++++++++.|+.|++||+
T Consensus       108 h-~~~~~~~~~~~-------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          108 H-SARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             C-SSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             c-cceEEEeecCC-------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            9 88888776653       57999999999999998764 466778899999999999999999999999999999999


Q ss_pred             cCCcee-----EEEEcCCcceEEEEeCCCCEEEE---E-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEE--
Q 019326          160 VRGRRS-----FYHKIGKEASLIKFDGSGEKFFM---V-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFT--  227 (343)
Q Consensus       160 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~--  227 (343)
                      ++++..     ........+..+.+.|.+..++.   + .++.|++||.+.........+...+..+.+.+ ++.+++  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEE
Confidence            887532     23334567889999997765442   2 57889999999999988888889999999884 455554  


Q ss_pred             EeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          228 GGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |+.|+.|++||+++++++.++. +|...|++++|+|++.         +|+|||.||+|+|||+.+.
T Consensus       260 g~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~---------~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          260 GFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGA---------TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS---------CEEEEETTTEEEEECCSCC
T ss_pred             EcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC---------EEEEEecCCeEEEEECCCC
Confidence            4479999999999999999999 9999999999999887         9999999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=284.44  Aligned_cols=269  Identities=13%  Similarity=0.092  Sum_probs=209.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecC--------ceEEEeeCCCeEEEEEcCCCee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSG--------TAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      |++++.|+.|+||++...       + ........+.+|.+.|.+++|+.        .+||+++.||+|++||+.+++.
T Consensus       176 laS~s~D~tI~iWd~~~~-------~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~  247 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTS-------T-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT  247 (524)
T ss_dssp             ------CEEEEEEEEETT-------T-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred             hccCCCCceEEEEEccCC-------C-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence            577889999999999862       2 11223345667889999999983        5899999999999999987642


Q ss_pred             -----------eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-eeeeeeeccccEEEE--EEec
Q 019326           75 -----------LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVKVHKKGVNDL--AVHH  140 (343)
Q Consensus        75 -----------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~  140 (343)
                                 ...+.+| ...|++++|++++      .|++|+.||+|++||+++++ +...+.+|...|.++  +|+|
T Consensus       248 ~~~~~~~~~~p~~~l~~h-~~~v~sv~~s~~~------~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~  320 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSLA-DSLITTFDFLSPT------TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD  320 (524)
T ss_dssp             SSSEEECCCSCSEEECCT-TTCEEEEEESSSS------EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred             ccccceeecCceEEEEcC-CCCEEEEEecCCC------eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence                       2366778 8999999999864      89999999999999998764 456688999999999  5788


Q ss_pred             CC-CEEEEEeCCCeEEEEEccCCceeEEEE-c-C-CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcce
Q 019326          141 SG-KLALTVGRDDCLAMVNLVRGRRSFYHK-I-G-KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRI  214 (343)
Q Consensus       141 ~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i  214 (343)
                      ++ .+|++++.|++|++||+++++...... + . ..+.+++|+|+++.++++ .++.|++||++++..+..+. |...|
T Consensus       321 ~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V  400 (524)
T 2j04_B          321 FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTI  400 (524)
T ss_dssp             TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCE
T ss_pred             CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCce
Confidence            87 899999999999999999877554332 2 2 247889999999999988 88999999999988766655 88999


Q ss_pred             EEeeecC-CCeEEEEeCCCcEEEEECCCC--------------------------------------------ceeEEec
Q 019326          215 LCAAPGE-NGVLFTGGEDRSITAWDTNSG--------------------------------------------KVAYCIE  249 (343)
Q Consensus       215 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--------------------------------------------~~~~~~~  249 (343)
                      .+++|++ +.+|++|+.||+|++||+..+                                            ..+..+.
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~  480 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID  480 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------------
T ss_pred             EEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec
Confidence            9999995 679999999999999985321                                            1112233


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                       +|...|.+++|+|++.      .+..+++|+.||.|+||+++-
T Consensus       481 -gh~~~V~~Vafsp~~~------~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          481 -AHGINITCTKWNETSA------GGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             --CCCSCCCEEECCSTT------TTTEEEEECTTSEEEEEECSC
T ss_pred             -CCCceEEEEECCCCCC------ccHHHHhhccCceEEEEEccc
Confidence             5778888899988853      123899999999999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.7e-39  Score=277.38  Aligned_cols=267  Identities=16%  Similarity=0.188  Sum_probs=225.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+..            ......+.+|...|++++|+  +++|++|+.|+.|++||+.+++.+..+.
T Consensus       111 ~l~~~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          111 RFILGTTEGDIKVLDSNF------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEEEEETTSCEEEECTTS------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             EEEEEECCCCEEEEeCCC------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            588999999999999876            34556667999999999998  7899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee---ccccEEEEE-------------------
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV---HKKGVNDLA-------------------  137 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~-------------------  137 (343)
                      +| ...|.+++|+|++     ++|++++.|++|++||+++++.+..+..   |...|.+++                   
T Consensus       179 ~h-~~~v~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~  252 (420)
T 3vl1_A          179 GH-RATVTDIAIIDRG-----RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN  252 (420)
T ss_dssp             CC-SSCEEEEEEETTT-----TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred             CC-CCcEEEEEEcCCC-----CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence            99 9999999999998     8999999999999999999998888875   334455544                   


Q ss_pred             --EecCCCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEeCCCC-EEEEE-eCCcEEEEEccccee-EEEec-
Q 019326          138 --VHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFDGSGE-KFFMV-TEEKVGIHQAEDAKL-LCELD-  209 (343)
Q Consensus       138 --~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~~~~~-~~~~~-  209 (343)
                        |+|++++|++++.||.|++||+++++.......  ...+.+++|+|++. +++++ .++.|++||+++++. +..+. 
T Consensus       253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~  332 (420)
T 3vl1_A          253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI  332 (420)
T ss_dssp             TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE
T ss_pred             eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc
Confidence              578899999999999999999999987766543  46799999999999 88888 899999999998753 55554 


Q ss_pred             -CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC---------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          210 -GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG---------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       210 -~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                       +...+.++.+.++++|++++.||.|++||+...         .....+. .|...|.+++|+|++.     .++ .+++
T Consensus       333 ~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-----~~g-~l~a  405 (420)
T 3vl1_A          333 NEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLV-SNDDAVSQFCYVSDDE-----SNG-EVLE  405 (420)
T ss_dssp             STTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEEC-CSSCCCCEEEEECCSS-----SSC-EEEE
T ss_pred             cCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEc-cCCcceEEEEEccCCC-----Ccc-eEEE
Confidence             677899998888889999999999999998863         2223344 7889999999999874     122 4666


Q ss_pred             EcCCCcEEEEeccC
Q 019326          280 ASSDGVICVWDVRM  293 (343)
Q Consensus       280 ~~~dg~i~vwd~~~  293 (343)
                      .+.+|.+.+|++++
T Consensus       406 ~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          406 VGKNNFCALYNLSN  419 (420)
T ss_dssp             EETTTEEEEEESCC
T ss_pred             EcCCceEEEEeccC
Confidence            66789999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-38  Score=274.42  Aligned_cols=260  Identities=12%  Similarity=0.104  Sum_probs=233.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||..             ......+.+|..+|.+++|+  +++|++++.||.|++||+.+++.+..+.
T Consensus       122 ~l~~~~~dg~i~i~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKT-------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             EEEEEETTSCEEEEETT-------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEEeCCCeEEEEeCC-------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            48999999999999933             24556677899999999998  8899999999999999999999999888


Q ss_pred             cCCCCC---------------eEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCE
Q 019326           80 HHESSS---------------VTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL  144 (343)
Q Consensus        80 ~~~~~~---------------v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~  144 (343)
                      .+ ...               +.+++|++++      .+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++
T Consensus       189 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          189 LK-ETGGSSINAENHSGDGSLGVDVEWVDDD------KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             CC----------------CCCBSCCEEEETT------EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             cc-ccCccceeeccccCCcceeeEEEEcCCC------EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence            77 555               9999999987      7999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC
Q 019326          145 ALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE  221 (343)
Q Consensus       145 l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~  221 (343)
                      |++++.|+.|++||+++++...... +...+.+++|+|++ .++++ .++.+++||+++++.+..+. +..++.+++|++
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence            9999999999999999988766654 56789999999999 77777 89999999999999888887 688999999984


Q ss_pred             -CCeEEEEeCCCcEEEEECCCCc--------------------eeEEecccccc--cEEEEEEEecCCCCCCCCCCeEEE
Q 019326          222 -NGVLFTGGEDRSITAWDTNSGK--------------------VAYCIEDAHSA--RVKGIVVLTKNDGGSTAENPYLVA  278 (343)
Q Consensus       222 -~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~  278 (343)
                       +++|++++.||.|++||+++++                    .+..+. .|..  .|++++|+|++.         +|+
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~---------~l~  410 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGN---------KIS  410 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSS---------EEE
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCc---------eEE
Confidence             6799999999999999999888                    888888 8866  999999999987         999


Q ss_pred             EEcCCCcEEEEecc
Q 019326          279 SASSDGVICVWDVR  292 (343)
Q Consensus       279 s~~~dg~i~vwd~~  292 (343)
                      +++.||.|++||++
T Consensus       411 ~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          411 VAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEESSSCCEEEECC
T ss_pred             EEecCceEEEEeec
Confidence            99999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-39  Score=273.30  Aligned_cols=290  Identities=13%  Similarity=0.098  Sum_probs=235.2

Q ss_pred             EEecCCCCCeEEEEec--C-ceEEEeeC---CCeEEEEEcCCCeeeeEec-cCCCCCeEEEEEeCC---CCCCCCceEEE
Q 019326           36 FSYPAHLSPITTVAVS--G-TAAASGGT---DDTIHLYDLSTSSSLGAIH-HHESSSVTSLAFYTP---QNLSVPRNLFS  105 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~-~~l~s~~~---dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~~~~---~~~~~~~~l~s  105 (343)
                      ..+.+|...|++++|+  + .++++|+.   ||.|++||+.+++...... .| ...|.+++|+|+   +     ++|++
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-----~~l~~   85 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK-AKPIKCGTFGATSLQQ-----RYLAT   85 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEE-SSCEEEEECTTCCTTT-----CCEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecc-cCcEEEEEEcCCCCCC-----ceEEE
Confidence            3456899999999999  4 45566766   9999999999987765543 56 899999999998   5     69999


Q ss_pred             eeCCCeEEEEECCCcc-eeeeeeeccccEEEEEE------ecCCCEEEEEeCCCeEEEEEccCCc-eeEEEEc-----CC
Q 019326          106 TSADGFVSIFDADPFV-LLTSVKVHKKGVNDLAV------HHSGKLALTVGRDDCLAMVNLVRGR-RSFYHKI-----GK  172 (343)
Q Consensus       106 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~-----~~  172 (343)
                      |+.||.|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.|+.|++||+++++ .......     ..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            9999999999999887 88999999999999955      6789999999999999999999887 4444432     22


Q ss_pred             cceEEE----EeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC----CCeEEEEeCCCcEEEEECCCCc
Q 019326          173 EASLIK----FDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE----NGVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       173 ~~~~~~----~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      .+.+++    |+|++++++++ .++.|++||+++++......+...+.+++|++    ++++++++.||.|++||+++++
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            677777    67899999999 78999999999999988888999999999984    6799999999999999998765


Q ss_pred             eeEE-----ecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC--------------Cccc-
Q 019326          244 VAYC-----IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP--------------LPLA-  303 (343)
Q Consensus       244 ~~~~-----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------~~~~-  303 (343)
                      ....     +. +|...|++++|+|++.        .+|++++.||.|++||++.+.....              ..+. 
T Consensus       246 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          246 PTKGFASVSEK-AHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             TTTEEEEEEEE-CCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             cccceeeeccC-CCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            4433     33 7999999999998764        1699999999999999987542210              0111 


Q ss_pred             ccccccceeEEEcCCCCceec-cccCCCCCCCccccCc
Q 019326          304 EAKTNSRLTCLAGSSTKSFKR-PQIGDSAPKGEEKASM  340 (343)
Q Consensus       304 ~~~~~~~i~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~  340 (343)
                      ...+...|.+++|+|++.+++ .+..|+.++.++..+.
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            123456799999999999998 7889998887776554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-39  Score=299.63  Aligned_cols=314  Identities=11%  Similarity=0.021  Sum_probs=238.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .||+|+.||.|++|+...            ......+ .|..+|.+++|+ +++|++++.|+.|++||+.+++.+..+. 
T Consensus        31 ~lAsgs~Dg~I~lw~~~~------------~~~~~~~-~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-   96 (902)
T 2oaj_A           31 LLAIATVTGEVHIYGQQQ------------VEVVIKL-EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-   96 (902)
T ss_dssp             EEEEEETTSEEEEECSTT------------CEEEEEC-SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred             EEEEEeCCCEEEEEeCCC------------cEEEEEc-CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence            589999999999999765            2233333 488999999999 7889999999999999999999988886 


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee-----------eeeeeccccEEEEEEecC-CCEEEEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL-----------TSVKVHKKGVNDLAVHHS-GKLALTV  148 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~i~~~~~-~~~l~~~  148 (343)
                      | ...|++++|+|++     ++|++|+.||+|++||++++++.           ..+.+|.+.|.+++|+|+ +..++++
T Consensus        97 ~-~~~V~~v~~sp~g-----~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           97 V-PGKITSIDTDASL-----DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             C-SSCEEEEECCTTC-----SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             C-CCCEEEEEECCCC-----CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            5 5899999999999     89999999999999999887653           234668899999999996 4789999


Q ss_pred             eCCCeEEEEEccCCceeEEEEcC-------------------CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE-
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIG-------------------KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE-  207 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-  207 (343)
                      +.||.| +||+++++........                   ..+.+++|+|++.+|+++ .|+.|++||+++++.+.. 
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            999999 9999998877665433                   569999999999999999 899999999998887653 


Q ss_pred             -ec-----------------CCcceEEeeec----CC--CeEEEEeCC-----CcEEEEE--------------------
Q 019326          208 -LD-----------------GKKRILCAAPG----EN--GVLFTGGED-----RSITAWD--------------------  238 (343)
Q Consensus       208 -~~-----------------~~~~i~~~~~~----~~--~~l~~~~~d-----g~i~i~d--------------------  238 (343)
                       +.                 +..+|.+++|+    ++  .++++|+.+     ..+.+|+                    
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~  329 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA  329 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence             21                 13367888774    21  345555443     1444444                    


Q ss_pred             ---------------------------------------------------CCCCceeEE-------ecccccccEEEEE
Q 019326          239 ---------------------------------------------------TNSGKVAYC-------IEDAHSARVKGIV  260 (343)
Q Consensus       239 ---------------------------------------------------~~~~~~~~~-------~~~~h~~~v~~~~  260 (343)
                                                                         +.++.....       +. .|...|++++
T Consensus       330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~-~~~~~v~~~~  408 (902)
T 2oaj_A          330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS-WLRPLATTSM  408 (902)
T ss_dssp             SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT-TBTTBEEEEE
T ss_pred             CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc-ccCCCeeEEE
Confidence                                                               433322211       11 3446677777


Q ss_pred             EEecC---------------------C----CCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccc--------ccc
Q 019326          261 VLTKN---------------------D----GGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAE--------AKT  307 (343)
Q Consensus       261 ~~~~~---------------------~----~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~  307 (343)
                      +++..                     .    ...+++++++|+||+.|++|++||+.++..... ....        ..+
T Consensus       409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-ASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-BCEEEEHHHHTTCSS
T ss_pred             EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC-ceEEeechhhcCCCC
Confidence            75410                     0    012357888999999999999999998742211 1111        134


Q ss_pred             ccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          308 NSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       308 ~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      ...|.+++|+|++++++.+..|+.++.++..
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence            5679999999999999999999988877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-38  Score=309.90  Aligned_cols=306  Identities=15%  Similarity=0.167  Sum_probs=263.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .+++|+.|+.|++||+..            ......+.+|.++|++++|+  +++|++++.||.|++||+.+++....+.
T Consensus       715 ~l~sg~~d~~v~vwd~~~------------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  782 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQ------------KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN  782 (1249)
T ss_dssp             EEEEEETTSCEEEEETTS------------SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCC------------cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence            478999999999999987            34566778999999999999  8899999999999999998765443321


Q ss_pred             -------------------------------------------------------cCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           80 -------------------------------------------------------HHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        80 -------------------------------------------------------~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                                                                             +| ...|.+++|+|++     .+++
T Consensus       783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~v~~~~~sp~~-----~~l~  856 (1249)
T 3sfz_A          783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH-HSTIQYCDFSPYD-----HLAV  856 (1249)
T ss_dssp             CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS-SSCCCEEEECSST-----TEEE
T ss_pred             ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC-CCceEEEEEcCCC-----CEEE
Confidence                                                                   45 6789999999998     8999


Q ss_pred             EeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC----------------------
Q 019326          105 STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG----------------------  162 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------  162 (343)
                      +++.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.+.                      
T Consensus       857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  936 (1249)
T 3sfz_A          857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM  936 (1249)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred             EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence            9999999999999999999999999999999999999999999999999999996531                      


Q ss_pred             ---------------------------------------------------------ceeEE-EEcCCcceEEEEeCCCC
Q 019326          163 ---------------------------------------------------------RRSFY-HKIGKEASLIKFDGSGE  184 (343)
Q Consensus       163 ---------------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~~  184 (343)
                                                                               +.... ..+...+.+++|+|+++
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A          937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp             EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred             EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence                                                                     00000 01234577899999999


Q ss_pred             EEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          185 KFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      +++++ .|+.+++||+.+++......|...+.++.++++..+++++.||.|++||+.+++....+. +|...|.+++|+|
T Consensus      1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAISS 1095 (1249)
T ss_dssp             CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE-CCSSCCCCEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc-ccCCcEEEEEECC
Confidence            99999 899999999999998877779999999999988899999999999999999999999998 9999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      ++.         ++++++.||.|++||+.++......    ..+...|.+++|+|++.+++.+..++.++.++...
T Consensus      1096 d~~---------~l~s~s~d~~v~iwd~~~~~~~~~l----~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A         1096 DAT---------KFSSTSADKTAKIWSFDLLSPLHEL----KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp             SSS---------SCEEECCSSCCCEECSSSSSCSBCC----CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred             CCC---------EEEEEcCCCcEEEEECCCcceeeee----ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            987         9999999999999999987532211    13456799999999999999999999888777543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-39  Score=280.09  Aligned_cols=268  Identities=12%  Similarity=0.117  Sum_probs=219.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC---CCeeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS---TSSSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~---~~~~~~   76 (343)
                      .|++|+.||.|++||+...+.      .........+ +|..+|++++|+  +++|++|+.||.|++||+.   +++...
T Consensus        78 ~l~s~s~dg~v~vwd~~~~~~------~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  150 (437)
T 3gre_A           78 YLITGSDQGVIKIWNLKEIIV------GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK  150 (437)
T ss_dssp             EEEEEETTSEEEEEEHHHHHT------TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE
T ss_pred             EEEEecCCceEEEeECccccc------Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee
Confidence            589999999999999876110      0112223333 499999999998  7899999999999999995   444433


Q ss_pred             Eec----------c--CCCCCeEEEE--EeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee--ccccEEEEEEec
Q 019326           77 AIH----------H--HESSSVTSLA--FYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV--HKKGVNDLAVHH  140 (343)
Q Consensus        77 ~~~----------~--~~~~~v~~l~--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~  140 (343)
                      .+.          .  + ...+.++.  +++++     .+|++|+.|+.|++||+++++++..+..  |...|.+++|+|
T Consensus       151 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~  224 (437)
T 3gre_A          151 FLNCECIRKINLKNFGK-NEYAVRMRAFVNEEK-----SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE  224 (437)
T ss_dssp             EEEEEEEEEEEGGGGSS-CCCEEEEEEEECSSC-----EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT
T ss_pred             ccccceeEEEEccCccc-ccCceEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC
Confidence            322          1  3 56777777  44666     7999999999999999999999999998  889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeEEEEc--CCcceEEEEeC----CCCEEEEE-eCCcEEEEEcccceeEEEec----
Q 019326          141 SGKLALTVGRDDCLAMVNLVRGRRSFYHKI--GKEASLIKFDG----SGEKFFMV-TEEKVGIHQAEDAKLLCELD----  209 (343)
Q Consensus       141 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~-~~~~i~~~d~~~~~~~~~~~----  209 (343)
                      ++++|++++.||.|++||+++++.+.....  ...+.+++++|    ++.+++++ .|+.|++||+++++.+..+.    
T Consensus       225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred             CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence            999999999999999999999888776643  45688896654    67789988 89999999999998877765    


Q ss_pred             -----------------------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc---------------
Q 019326          210 -----------------------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA---------------  251 (343)
Q Consensus       210 -----------------------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------  251 (343)
                                             |...|.+++++++++|++|+.||.|++||+.+++....+. +               
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~  383 (437)
T 3gre_A          305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI-SPSRFSDVFIPTQVTA  383 (437)
T ss_dssp             CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE-CC--CCCEEEEEEEET
T ss_pred             CCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe-cccccCceEEEEEeec
Confidence                                   4456888899877899999999999999999988777666 3               


Q ss_pred             ----------------------ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          252 ----------------------HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       252 ----------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                                            |...|+++++++....       .+|++|+.||.|+||+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-------~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          384 NLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-------PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             TEEEEEEECC-------------CCCEEEEEEEESSSS-------EEEEEEETTSCEEEEC
T ss_pred             ceEEEEEecccccccccCcccccccceeeEeeeccCCc-------eEEEEEcCCceEEEeC
Confidence                                  8899999999998321       2999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-37  Score=270.27  Aligned_cols=259  Identities=17%  Similarity=0.263  Sum_probs=231.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .|++|+.||.|++||+..            .+....+.+|...|.+++|+++.+++|+.||.|++||+.+++.+..+..|
T Consensus       171 ~l~s~~~dg~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAET------------GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEETTSCEEEEETTT------------TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEEeCCCeEEEEECCc------------CcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            479999999999999987            35567788999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                       ...|.+++|  ++     +++++|+.||.|++||+++++++..+.+|...|.+++|  ++.++++++.|+.|++||+++
T Consensus       239 -~~~v~~~~~--~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          239 -VAAVRCVQY--DG-----RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             -SSCEEEEEE--CS-----SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             -cccEEEEEE--CC-----CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence             999999999  44     68999999999999999999999999999999999999  778999999999999999999


Q ss_pred             CceeEEEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec----CCcceEEeeecCCCeEEEEeCCCcEE
Q 019326          162 GRRSFYHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD----GKKRILCAAPGENGVLFTGGEDRSIT  235 (343)
Q Consensus       162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~dg~i~  235 (343)
                      ++.+..... ...+.++.+  ++++++++ .|+.|++||+++++.+..+.    |...|.++++ +++++++|+.||.|+
T Consensus       309 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~  385 (445)
T 2ovr_B          309 GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVK  385 (445)
T ss_dssp             CCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEE
T ss_pred             CCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEE
Confidence            987765543 344555555  56788888 89999999999999998887    6788999999 578999999999999


Q ss_pred             EEECCCCceeEEec----ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc----EEEEeccCc
Q 019326          236 AWDTNSGKVAYCIE----DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV----ICVWDVRMA  294 (343)
Q Consensus       236 i~d~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~----i~vwd~~~~  294 (343)
                      +||+.+++.+..+.    ..|...|++++|+|++.         ++++|+.||+    |.+||++..
T Consensus       386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---------VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE---------EEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEECCCCceeeeeeccccCCCCceEEEEEecCCEE---------EEEEcccCCCCccEEEEEECCCC
Confidence            99999999998882    26889999999999887         9999999998    999999863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-39  Score=280.08  Aligned_cols=268  Identities=18%  Similarity=0.157  Sum_probs=211.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .||+|+.||.|+|||+...       .   ......+.+|.++|++|+|+   +++|++|+.||+|++||++++......
T Consensus       134 ~lasGs~dg~i~lWd~~~~-------~---~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  203 (435)
T 4e54_B          134 TVAVGSKGGDIMLWNFGIK-------D---KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA  203 (435)
T ss_dssp             CEEEEETTSCEEEECSSCC-------S---CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCC-------C---ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence            3789999999999999762       1   23345567899999999997   679999999999999999876544333


Q ss_pred             ccC-CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCCeEEE
Q 019326           79 HHH-ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDDCLAM  156 (343)
Q Consensus        79 ~~~-~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~i~~  156 (343)
                      ..+ ....+.+++|+|++     ++|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. ++++++.|+.|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~-----~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i  277 (435)
T 4e54_B          204 SSDTINIWFCSLDVSASS-----RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI  277 (435)
T ss_dssp             CCSSCSCCCCCEEEETTT-----TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred             ccCCCCccEEEEEECCCC-----CEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence            322 14567899999998     8999999999999999975 66788899999999999999875 7889999999999


Q ss_pred             EEccCCceeE----EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCc------ceEEeeec-CCC
Q 019326          157 VNLVRGRRSF----YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKK------RILCAAPG-ENG  223 (343)
Q Consensus       157 wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~------~i~~~~~~-~~~  223 (343)
                      ||+++.+...    ...+...|.+++|+|++.+|+++ .|+.|++||+.+++....+. |..      .+....++ .+.
T Consensus       278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (435)
T 4e54_B          278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN  357 (435)
T ss_dssp             EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSS
T ss_pred             EecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCC
Confidence            9998876432    23456789999999999999999 89999999999987766554 211      12223333 233


Q ss_pred             eEEEEe------------CCCcEEEEECCCCceeEEecccccccEEEE-EEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          224 VLFTGG------------EDRSITAWDTNSGKVAYCIEDAHSARVKGI-VVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       224 ~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +++++.            .++.|++||..+++.+..+..+|...|.++ +|+|++.         +|++|+ |+.|+||+
T Consensus       358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~---------~lasg~-d~~i~iW~  427 (435)
T 4e54_B          358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD---------TLASAM-GYHILIWS  427 (435)
T ss_dssp             CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS---------CEEEEC-SSEEEECC
T ss_pred             EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC---------EEEEEc-CCcEEEEE
Confidence            444432            446799999999999988876888999888 5888876         888876 88999999


Q ss_pred             ccCcc
Q 019326          291 VRMAI  295 (343)
Q Consensus       291 ~~~~~  295 (343)
                      +++++
T Consensus       428 ~~~gk  432 (435)
T 4e54_B          428 QQEAR  432 (435)
T ss_dssp             CC---
T ss_pred             CCcCe
Confidence            99874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-37  Score=282.42  Aligned_cols=247  Identities=16%  Similarity=0.262  Sum_probs=214.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC----CeEEEEEcCCCeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD----DTIHLYDLSTSSSL   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d----g~i~iwd~~~~~~~   75 (343)
                      .|++|+.||.|++||+.....    ...........+.+|..+|.+++|+  +.+|++++.+    +.|++||  +++.+
T Consensus        80 ~l~s~~~dg~v~vw~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~  153 (615)
T 1pgu_A           80 YLCSGDESGKVIVWGWTFDKE----SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL  153 (615)
T ss_dssp             EEEEEETTSEEEEEEEEEEGG----GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred             EEEEecCCCEEEEEeCCCCcc----cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence            488999999999999975100    1112346677788899999999999  8899999987    6888888  66788


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc---cEEEEEEecC-CCEEEEEeCC
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK---GVNDLAVHHS-GKLALTVGRD  151 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~l~~~~~d  151 (343)
                      ..+..| ...|.+++|+|++.    ..+++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +++|++++.|
T Consensus       154 ~~~~~~-~~~v~~~~~~~~~~----~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          154 GEVSGH-SQRINACHLKQSRP----MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             EECCSC-SSCEEEEEECSSSS----CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             eeeecC-CccEEEEEECCCCC----cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            888888 99999999999981    3899999999999999999999999999999   9999999999 9999999999


Q ss_pred             CeEEEEEccCCceeEEE-----EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC-----cceEEeeec
Q 019326          152 DCLAMVNLVRGRRSFYH-----KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK-----KRILCAAPG  220 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-----~~i~~~~~~  220 (343)
                      +.|++||+++++.+...     .+...+..++|+ ++.+++++ .++.+++||+++++.+..+...     ..+.++.+.
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence            99999999999988877     567889999999 99999999 7999999999999998888744     678888887


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEE
Q 019326          221 ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVV  261 (343)
Q Consensus       221 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~  261 (343)
                      +++++++++.||.|++||+.+++.+..+. +|...|.+++|
T Consensus       308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~  347 (615)
T 1pgu_A          308 GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV  347 (615)
T ss_dssp             ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET
T ss_pred             CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe
Confidence            88899999999999999999988888887 77777766665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-39  Score=276.74  Aligned_cols=268  Identities=12%  Similarity=0.112  Sum_probs=207.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe---eee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS---SLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---~~~   76 (343)
                      .|++|+.|+.|++||+..       +   .......+.+|..+|++++|+  +++|++++.|+.|++||+.+++   ...
T Consensus        25 ~l~~~~~d~~i~iw~~~~-------~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~   94 (377)
T 3dwl_C           25 EFVTTTATNQVELYEQDG-------N---GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL   94 (377)
T ss_dssp             EEECCCSSSCBCEEEEET-------T---EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred             EEEEecCCCEEEEEEccC-------C---ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence            478899999999999986       1   125667788999999999999  7899999999999999999877   666


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc---eeeeeee-ccccEEEEEEecCCCEEEEEeCCC
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV---LLTSVKV-HKKGVNDLAVHHSGKLALTVGRDD  152 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~  152 (343)
                      .+..| ...|.+++|+|++     ++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|++++.|+
T Consensus        95 ~~~~~-~~~v~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           95 VLLRL-NRAATFVRWSPNE-----DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             ECCCC-SSCEEEEECCTTS-----SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             Eeccc-CCceEEEEECCCC-----CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence            77788 8999999999998     799999999999999998876   4677777 999999999999999999999999


Q ss_pred             eEEEEEccC------------------CceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEccccee----EEEec
Q 019326          153 CLAMVNLVR------------------GRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL----LCELD  209 (343)
Q Consensus       153 ~i~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~----~~~~~  209 (343)
                      .|++||++.                  ++......+...+.+++|+|++++++++ .|+.|++||+++++.    +..+.
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  248 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK  248 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence            999999953                  2233333556779999999999999999 899999999999876    55555


Q ss_pred             -CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCc---------------------------------------eeEE-
Q 019326          210 -GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGK---------------------------------------VAYC-  247 (343)
Q Consensus       210 -~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---------------------------------------~~~~-  247 (343)
                       |..++.+++|++ +.+|++|+.++.+ +|+.....                                       .... 
T Consensus       249 ~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (377)
T 3dwl_C          249 LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNM  327 (377)
T ss_dssp             CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------------
T ss_pred             CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccch
Confidence             778899999994 5677777655544 77664211                                       0000 


Q ss_pred             -----------ecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          248 -----------IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       248 -----------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                                 +...|...|+++++.+....     +...|+|++.||.|++||+
T Consensus       328 ~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-----~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          328 DLKGSSQSISSLPTVHQNMIATLRPYAGTPG-----NITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ---------CCCSSSCSSCEEEEEEEEEETT-----EEEEEEEEETTSEEEEECC
T ss_pred             hhccccccccccCccccceeEEEeccCCCCC-----ceEEEEeecCCCcEEEecC
Confidence                       11139999999998776531     1125999999999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=263.76  Aligned_cols=283  Identities=14%  Similarity=0.142  Sum_probs=232.2

Q ss_pred             eEEeEEecCCCCCeEEEEec-C----ceEEEeeCCCeEEEEEcCC-Ceee-eEeccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           32 LTQLFSYPAHLSPITTVAVS-G----TAAASGGTDDTIHLYDLST-SSSL-GAIHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~-~----~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      ...+..+.+|.+.|++++|+ .    ++|++|+.||.|++||+.+ ++.+ ..+..| ...|.+++|+|++     ++|+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~-----~~l~  102 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-TGPVLDVCWSDDG-----SKVF  102 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-SSCEEEEEECTTS-----SEEE
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-cCCEEEEEECcCC-----CEEE
Confidence            45666788999999999999 3    7999999999999999997 5554 677888 9999999999998     8999


Q ss_pred             EeeCCCeEEEEECCCcceeeeeeeccccEEEEEE--ecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCC
Q 019326          105 STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAV--HHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGS  182 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
                      +++.||.|++||+.+++.+. +..|...|.+++|  +|++++|++++.||.|++||+++++.+........+.++.+.+ 
T Consensus       103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-  180 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-  180 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET-
T ss_pred             EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC-
Confidence            99999999999999987666 5669999999999  8899999999999999999999999888888777777777664 


Q ss_pred             CCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeec-CC----CeEEEEeCCCcEEEEECCCC---ceeEEecc
Q 019326          183 GEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPG-EN----GVLFTGGEDRSITAWDTNSG---KVAYCIED  250 (343)
Q Consensus       183 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~-~~----~~l~~~~~dg~i~i~d~~~~---~~~~~~~~  250 (343)
                       ..++++ .++.+.+|+++.........   ......++.+. ..    ..+++++.||.|++||++..   ..+..+. 
T Consensus       181 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-  258 (368)
T 3mmy_A          181 -PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-  258 (368)
T ss_dssp             -TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-
T ss_pred             -CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-
Confidence             456666 99999999998765443332   33444444443 22    23999999999999999987   5567777 


Q ss_pred             cccc------------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          251 AHSA------------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       251 ~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      +|..            +|++++|+|++.         +|++++.||.|++||++++......    ..+...|.+++|+|
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTS----EQLDQPISACCFNH  325 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEEC----CCCSSCEEEEEECT
T ss_pred             eeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEe----cCCCCCceEEEECC
Confidence            6766            799999999887         9999999999999999987533221    13456799999999


Q ss_pred             CCceeccccCCCCCCCccc
Q 019326          319 TKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~  337 (343)
                      ++.+++.+..++..+..+.
T Consensus       326 ~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          326 NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             TSSCEEEEECCCSTTCGGG
T ss_pred             CCCeEEEEecccccccccc
Confidence            9999999999886665553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.2e-38  Score=291.89  Aligned_cols=266  Identities=13%  Similarity=0.144  Sum_probs=237.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+.+            ...+..+.+|..+|++++|+  +++|++|+.||.|++||+.+++.+..+.
T Consensus        27 ~la~~~~~g~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           27 WVLTTLYSGRVEIWNYET------------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             EEEEEETTSEEEEEETTT------------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCC------------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            488999999999999876            35566777999999999999  8899999999999999999999999999


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~w  157 (343)
                      .| ...|.+++|+|++     ++|++++.||.|++||+.++ .....+.+|...|.+++|+| ++..+++++.||.|++|
T Consensus        95 ~~-~~~v~~~~~s~~~-----~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw  168 (814)
T 3mkq_A           95 AH-PDYIRSIAVHPTK-----PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (814)
T ss_dssp             CC-SSCEEEEEECSSS-----SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             cC-CCCEEEEEEeCCC-----CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            99 8999999999999     79999999999999999876 67788889999999999999 88999999999999999


Q ss_pred             EccCCceeEEEEcC--CcceEEEEeC--CCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeC
Q 019326          158 NLVRGRRSFYHKIG--KEASLIKFDG--SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGE  230 (343)
Q Consensus       158 d~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~  230 (343)
                      |+.++.........  ..+..++|+|  ++.+++++ .++.|++||+++++.+..+. |...+.+++|++ +.++++++.
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            99888766555443  7789999999  99999999 89999999999999988887 788999999995 569999999


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ||.|++||+.+++.+..+. .|...+.+++|+|++..        .+++++.|+.+.+|++...
T Consensus       249 dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          249 DGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRK--------NYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             TSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGG--------GEEEEEETTEEEEEECSCC
T ss_pred             CCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCc--------eEEEEEeCCCEEEEEcCCC
Confidence            9999999999999999998 89999999999998752        3455555777889987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-39  Score=267.69  Aligned_cols=241  Identities=14%  Similarity=0.185  Sum_probs=197.6

Q ss_pred             EecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCC--CCCCCCceEEEeeCCC
Q 019326           37 SYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTP--QNLSVPRNLFSTSADG  110 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~s~~~dg  110 (343)
                      .+.+|.++|++++|+  +++|++|+.|++|++||+.+++  .+..+.+| ...|.+++|+++  +     ++|++|+.|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~-----~~l~s~s~D~   81 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH-EGPVWQVAWAHPMYG-----NILASCSYDR   81 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC-SSCEEEEEECCGGGS-----SCEEEEETTS
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC-CccEEEEEeCCCCCC-----CEEEEEECCC
Confidence            346899999999998  8999999999999999998875  46778899 999999999863  5     6999999999


Q ss_pred             eEEEEECCCc--ceeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceeEE----EEcCCcceEEEEeCC
Q 019326          111 FVSIFDADPF--VLLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRRSFY----HKIGKEASLIKFDGS  182 (343)
Q Consensus       111 ~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~~~~~~~  182 (343)
                      +|++||++++  +....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+.....    ..+...+.+++|+|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            9999999876  356677889999999999998  78999999999999999987642211    123456788999987


Q ss_pred             -----------------CCEEEEE-eCCcEEEEEcccc---eeEEEec-CCcceEEeeecCC-----CeEEEEeCCCcEE
Q 019326          183 -----------------GEKFFMV-TEEKVGIHQAEDA---KLLCELD-GKKRILCAAPGEN-----GVLFTGGEDRSIT  235 (343)
Q Consensus       183 -----------------~~~~~~~-~~~~i~~~d~~~~---~~~~~~~-~~~~i~~~~~~~~-----~~l~~~~~dg~i~  235 (343)
                                       +++++++ .|+.|++||++..   +....+. |...|.+++|++.     .+|++|+.||+|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                             3678888 8999999999755   3455555 7889999999854     6899999999999


Q ss_pred             EEECCCCc----eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          236 AWDTNSGK----VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       236 i~d~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +||+.+..    ....+. .|...|.+++|+|++.         +|++++.||.|++|+...
T Consensus       242 iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~---------~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITAN---------ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTC---------CEEEEESSSCEEEEEECT
T ss_pred             EEEccCccccchhhhhhh-cCCCcEEEEEEcCCCC---------EEEEEcCCCeEEEEEECC
Confidence            99987631    223444 7899999999999987         999999999999999863

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.7e-37  Score=261.03  Aligned_cols=273  Identities=13%  Similarity=0.148  Sum_probs=211.5

Q ss_pred             eEEecc-------CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEe-----------eCCCeE
Q 019326            3 LIAGSY-------EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASG-----------GTDDTI   64 (343)
Q Consensus         3 l~~g~~-------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-----------~~dg~i   64 (343)
                      |++|+.       ++.|++|++......  ............+.+|...|++++++++.+++|           +.|+.+
T Consensus        29 l~sGGg~~~~sGi~N~i~~w~~~~~~~~--~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~  106 (365)
T 4h5i_A           29 LVAGGGGEGNNGIPNKLTVLRVDPTKDT--EKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHL  106 (365)
T ss_dssp             EEEEECCSSSSSCCEEEEEEEECTTSSS--HHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCE
T ss_pred             EEEECCCccccCCCCEEEEEEEcCCCcc--eeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcE
Confidence            566654       335999999763210  011122333456778999999999997777765           457889


Q ss_pred             EEEEcCCCeeee----Ee-----ccCCCCCeEEEEEeCCCCCCCCceEE--EeeCCCeEEEEECCCcceeeeeeeccccE
Q 019326           65 HLYDLSTSSSLG----AI-----HHHESSSVTSLAFYTPQNLSVPRNLF--STSADGFVSIFDADPFVLLTSVKVHKKGV  133 (343)
Q Consensus        65 ~iwd~~~~~~~~----~~-----~~~~~~~v~~l~~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  133 (343)
                      |+|++.+.....    ..     ..+ ...+.+++|+|++     ++++  +++.|++|++||+++++++..+. |...|
T Consensus       107 r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~fSpDg-----~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V  179 (365)
T 4h5i_A          107 RKFKYDKVNDQLEFLTSVDFDASTNA-DDYTKLVYISREG-----TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEV  179 (365)
T ss_dssp             EEEEEETTTTEEEEEEEECSSCCCCT-TCCEEEEEECTTS-----SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCC
T ss_pred             EEEEecCCCceEEEeeeeceeecCCc-ccCEEEEEEcCCC-----CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCce
Confidence            999987653221    11     122 4568999999999     6765  45579999999999999988886 78889


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE---cCCcceEEEEeCCCCEEEEE-eCC----cEEEEEcccceeE
Q 019326          134 NDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK---IGKEASLIKFDGSGEKFFMV-TEE----KVGIHQAEDAKLL  205 (343)
Q Consensus       134 ~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~  205 (343)
                      .+++|+|+++++++++.+ .+.+|+..+++......   +...+..++|+|+++.++++ .++    .+++|++......
T Consensus       180 ~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          180 KDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             CEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred             EEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence            999999999999998855 57777777777654433   34568899999999999998 555    5788888765432


Q ss_pred             ----EEe-cCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          206 ----CEL-DGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       206 ----~~~-~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                          ..+ .|..+|++++|++ +++|++|+.|+.|+|||+++++++..+..+|..+|++++|+|++.         +|+|
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~---------~laS  329 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST---------YVAS  329 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC---------EEEE
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC---------EEEE
Confidence                223 3778899999994 679999999999999999999999987559999999999999988         9999


Q ss_pred             EcCCCcEEEEeccCc
Q 019326          280 ASSDGVICVWDVRMA  294 (343)
Q Consensus       280 ~~~dg~i~vwd~~~~  294 (343)
                      +|.|++|+|||+...
T Consensus       330 ~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          330 VSAANTIHIIKLPLN  344 (365)
T ss_dssp             EETTSEEEEEECCTT
T ss_pred             EeCCCeEEEEEcCCC
Confidence            999999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=296.17  Aligned_cols=306  Identities=13%  Similarity=0.067  Sum_probs=232.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL----   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~----   75 (343)
                      .|++++.|+.|++||+..       +     +.+..+. |...|++++|+  +++|++|+.||.|++||+.+++..    
T Consensus        71 ~L~S~s~D~~v~lWd~~~-------~-----~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           71 YLVVINAKDTVYVLSLYS-------Q-----KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             EEEEEETTCEEEEEETTT-------C-----SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             EEEEEECcCeEEEEECCC-------C-----cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            389999999999999986       2     2334443 67899999999  899999999999999999988754    


Q ss_pred             -------eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec------------------c
Q 019326           76 -------GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH------------------K  130 (343)
Q Consensus        76 -------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~  130 (343)
                             ..+.+| ...|.+++|+|++    ...+++|+.||.| +||+++++++..+..|                  .
T Consensus       138 ~~~~~~~~~~~~h-~~~V~sl~~sp~~----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          138 DNLQKSSFFPAAR-LSPIVSIQWNPRD----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             CCHHHHHTCSSSC-CCCCCEEEEETTE----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ccccccccccccC-CCCeEEEEEccCC----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence                   233567 8999999999974    1689999999999 9999999888888765                  4


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------------------CCcceEEEE------------
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------------------GKEASLIKF------------  179 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------------------~~~~~~~~~------------  179 (343)
                      ..|.+++|+|++++|++++.||.|++||+++++.+.....                   ...|..++|            
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll  291 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL  291 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence            6799999999999999999999999999977654321000                   011222222            


Q ss_pred             --------------------------------------------------------------------------------
Q 019326          180 --------------------------------------------------------------------------------  179 (343)
Q Consensus       180 --------------------------------------------------------------------------------  179 (343)
                                                                                                      
T Consensus       292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s  371 (902)
T 2oaj_A          292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL  371 (902)
T ss_dssp             EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred             EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------------------eCCCCEEE
Q 019326          180 ------------------------------------------------------------------------DGSGEKFF  187 (343)
Q Consensus       180 ------------------------------------------------------------------------~~~~~~~~  187 (343)
                                                                                              +|+++.++
T Consensus       372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la  451 (902)
T 2oaj_A          372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI  451 (902)
T ss_dssp             TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred             CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence                                                                                    23344455


Q ss_pred             EE-eCCcEEEEEcccceeE----EE--e------cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCc----------
Q 019326          188 MV-TEEKVGIHQAEDAKLL----CE--L------DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGK----------  243 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~----~~--~------~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----------  243 (343)
                      ++ .|+.|++||+.++...    ..  +      .|...|.+++|+ ++++|++|+.||+|++||+.+++          
T Consensus       452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~  531 (902)
T 2oaj_A          452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPES  531 (902)
T ss_dssp             EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred             EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence            55 5666666665554311    00  0      345679999999 46799999999999999987652          


Q ss_pred             -----------------------------------eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          244 -----------------------------------VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       244 -----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                                                         ++..+. +|...|++++|+|++          +||+|+.|++|+|
T Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~svafSpdG----------~lAsgs~D~tv~l  600 (902)
T 2oaj_A          532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAINNSNIG----------FVGIAYAAGSLML  600 (902)
T ss_dssp             ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEEEECBTS----------EEEEEETTSEEEE
T ss_pred             cccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-cCCCcEEEEEecCCc----------EEEEEeCCCcEEE
Confidence                                               356677 899999999998876          8999999999999


Q ss_pred             EeccCccccCCCccccc--ccccceeEEEcC-----CCC---ceeccccCCCCCCCccc
Q 019326          289 WDVRMAIKEKPLPLAEA--KTNSRLTCLAGS-----STK---SFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       289 wd~~~~~~~~~~~~~~~--~~~~~i~~~~~s-----~~~---~~~~~~~~~~~~~~~~~  337 (343)
                      ||++++.......+...  .+...|++++|+     ||+   ++++.+..|+.++.++.
T Consensus       601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            99987642211111122  456679999999     885   89999999998887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.9e-38  Score=292.00  Aligned_cols=277  Identities=14%  Similarity=0.174  Sum_probs=241.3

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      +.....+.+|.+.|++++|+  +.+|++++.||.|++||+.+++.+..+..| ...|.+++|+|++     ++|++++.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~-----~~l~~~~~d   76 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT-ETPVRAGKFIARK-----NWIIVGSDD   76 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGG-----TEEEEEETT
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC-CCcEEEEEEeCCC-----CEEEEEeCC
Confidence            34556778999999999999  899999999999999999999999999999 9999999999999     899999999


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-eEEE-EcCCcceEEEEeC-CCCEE
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR-SFYH-KIGKEASLIKFDG-SGEKF  186 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~  186 (343)
                      |.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++.. .... .+...+.+++|+| ++..+
T Consensus        77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence            9999999999999999999999999999999999999999999999999998743 3333 3567899999999 78888


Q ss_pred             EEE-eCCcEEEEEcccceeEEEec--CCcceEEeeecC---CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEE
Q 019326          187 FMV-TEEKVGIHQAEDAKLLCELD--GKKRILCAAPGE---NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      +++ .++.|++||+.+++....+.  +...+.+++|++   +.++++++.||.|++||+.+++.+..+. +|...|.+++
T Consensus       157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~  235 (814)
T 3mkq_A          157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV  235 (814)
T ss_dssp             EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEE
Confidence            888 89999999999887776665  347899999984   5799999999999999999999999998 9999999999


Q ss_pred             EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCc--eeccccC
Q 019326          261 VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS--FKRPQIG  328 (343)
Q Consensus       261 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~~~~~~~  328 (343)
                      |+|++.         +|++++.||.|++||+.++......    ......+.+++++|++.  +++.+..
T Consensus       236 ~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          236 FHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             ECSSSS---------EEEEEETTSCEEEEETTTCSEEEEE----CCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             EcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEe----ecCCCcEEEEEEccCCCceEEEEEeC
Confidence            999988         9999999999999999876422211    12345799999999987  3444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-38  Score=273.32  Aligned_cols=286  Identities=12%  Similarity=0.113  Sum_probs=230.3

Q ss_pred             eEEeEEe-cCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC---Ce---eeeEeccCCCCCeEEEEEeCCCCCCCCc
Q 019326           32 LTQLFSY-PAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST---SS---SLGAIHHHESSSVTSLAFYTPQNLSVPR  101 (343)
Q Consensus        32 ~~~~~~~-~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~~  101 (343)
                      .+.+..+ .+|.++|++++|+   +++|++|+.||.|++||+.+   +.   ....+ .| ...|.+++|+|++     +
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h-~~~v~~~~~~~~~-----~  124 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC-SSTVTQITMIPNF-----D  124 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC-SSCEEEEEECTTS-----S
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cC-CCCEEEEEEeCCC-----C
Confidence            3556677 8899999999998   57999999999999999987   43   22233 46 8999999999988     7


Q ss_pred             eEEEeeCCCeEEEEECC---Ccceeeeeee------------ccccEEEEE--EecCCCEEEEEeCCCeEEEEEccCCce
Q 019326          102 NLFSTSADGFVSIFDAD---PFVLLTSVKV------------HKKGVNDLA--VHHSGKLALTVGRDDCLAMVNLVRGRR  164 (343)
Q Consensus       102 ~l~s~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~i~--~~~~~~~l~~~~~d~~i~~wd~~~~~~  164 (343)
                      +|++|+.||+|++||+.   +++....+..            +...+.++.  +++++.+|++++.|+.|++||+++++.
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            99999999999999994   5555544443            334555555  557889999999999999999999998


Q ss_pred             eEEEE---cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe--cCCcceEEeeec----C-CCeEEEEeCCCc
Q 019326          165 SFYHK---IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL--DGKKRILCAAPG----E-NGVLFTGGEDRS  233 (343)
Q Consensus       165 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~--~~~~~i~~~~~~----~-~~~l~~~~~dg~  233 (343)
                      +....   +...+.+++|+|++++++++ .|+.|++||+++++.+..+  .+..+|.+++++    + +.+|++|+.||.
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            77766   45889999999999999999 8999999999999998877  477899999665    2 458999999999


Q ss_pred             EEEEECCCCceeEEeccc--------------------------ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          234 ITAWDTNSGKVAYCIEDA--------------------------HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~--------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      |++||+++++.+..+. +                          |...|++++|+ ++.         +|++++.||.|+
T Consensus       285 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~---------~l~s~~~d~~i~  353 (437)
T 3gre_A          285 LTIWNFVKGHCQYAFI-NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK---------ILLTDEATSSIV  353 (437)
T ss_dssp             EEEEETTTTEEEEEEE-SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE---------EEEEEGGGTEEE
T ss_pred             EEEEEcCCCcEEEEEE-cCCCCCccceecccccccccceecccccCCceEEEEEC-Cce---------EEEecCCCCeEE
Confidence            9999999999887776 3                          56668888888 544         999999999999


Q ss_pred             EEeccCccccCCCccc---------------------------------ccccccceeEEEcCCC--CceeccccCCCCC
Q 019326          288 VWDVRMAIKEKPLPLA---------------------------------EAKTNSRLTCLAGSST--KSFKRPQIGDSAP  332 (343)
Q Consensus       288 vwd~~~~~~~~~~~~~---------------------------------~~~~~~~i~~~~~s~~--~~~~~~~~~~~~~  332 (343)
                      +||+.++.......-.                                 ...+...|++++++++  +.+++.+..++.+
T Consensus       354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I  433 (437)
T 3gre_A          354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI  433 (437)
T ss_dssp             EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred             EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence            9999987533211100                                 0115677999999988  8899999999987


Q ss_pred             CCc
Q 019326          333 KGE  335 (343)
Q Consensus       333 ~~~  335 (343)
                      +.+
T Consensus       434 ~iw  436 (437)
T 3gre_A          434 GIF  436 (437)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-37  Score=262.17  Aligned_cols=243  Identities=18%  Similarity=0.225  Sum_probs=209.3

Q ss_pred             EecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeC--CCCCCCCceEEEeeC
Q 019326           37 SYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYT--PQNLSVPRNLFSTSA  108 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~--~~~~~~~~~l~s~~~  108 (343)
                      .+.+|.++|++++|+  +++|++|+.||.|++||+.++    +....+..| ...|.+++|+|  ++     ++|++++.
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~d~-----~~l~s~~~   79 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWASPEYG-----RIIASASY   79 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC-SSCEEEEEECCGGGC-----SEEEEEET
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC-CCcEEEEEEcCCCCC-----CEEEEEcC
Confidence            446899999999998  889999999999999999976    466777888 99999999999  46     79999999


Q ss_pred             CCeEEEEECCCc---------ceeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCceeEEE---------
Q 019326          109 DGFVSIFDADPF---------VLLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRRSFYH---------  168 (343)
Q Consensus       109 dg~i~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~---------  168 (343)
                      ||.|++||++++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+++++.+...         
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            999999999876         557788889999999999999  999999999999999999987744322         


Q ss_pred             -----EcCCcceEEEEeCC---CCEEEEE-eCCcEEEEEccccee--EEEec-CCcceEEeeecCC-----CeEEEEeCC
Q 019326          169 -----KIGKEASLIKFDGS---GEKFFMV-TEEKVGIHQAEDAKL--LCELD-GKKRILCAAPGEN-----GVLFTGGED  231 (343)
Q Consensus       169 -----~~~~~~~~~~~~~~---~~~~~~~-~~~~i~~~d~~~~~~--~~~~~-~~~~i~~~~~~~~-----~~l~~~~~d  231 (343)
                           .....+.+++|+|+   +..++++ .++.+.+|+...++.  ...+. |...|.+++|++.     ++|++|+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d  239 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD  239 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence                 23456889999997   8888888 788887777776664  44444 7889999999965     689999999


Q ss_pred             CcEEEEECCCC----------------------------------------------ceeEEecccccccEEEEEEEecC
Q 019326          232 RSITAWDTNSG----------------------------------------------KVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       232 g~i~i~d~~~~----------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      |.|++||++++                                              +.+..+. +|...|++++|+|++
T Consensus       240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTG  318 (351)
T ss_dssp             SCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSS
T ss_pred             CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCC
Confidence            99999999865                                              5666677 899999999999988


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      .         +|++++.||.|++||+.++.
T Consensus       319 ~---------~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          319 T---------ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             C---------CEEEEETTSCEEEEEECTTS
T ss_pred             C---------EEEEecCCCcEEEEecCcCc
Confidence            7         99999999999999999764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-37  Score=265.17  Aligned_cols=283  Identities=14%  Similarity=0.168  Sum_probs=238.0

Q ss_pred             EecCCCCC--eEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           37 SYPAHLSP--ITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        37 ~~~~h~~~--v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ...+|...  +.+++|+++.+++++.|+.|++||+.+++....+...+...|.+++|+|++     ++|++|+.||.|++
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~i  160 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-----SFLSVGLGNGLVDI  160 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-----SEEEEEETTSCEEE
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-----CEEEEECCCCeEEE
Confidence            33455544  556788878889999999999999999998888876338999999999998     89999999999999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC-ceeE-EEEcCCcceEEEEeCCCCEEEEE-eC
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG-RRSF-YHKIGKEASLIKFDGSGEKFFMV-TE  191 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  191 (343)
                      ||+.+++.+..+.+|...|.+++|+  ++++++++.||.|++||++.. .... ...+...+.+++|+|++.+++++ .|
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence            9999999999999999999999995  569999999999999999844 3333 33456889999999999999999 89


Q ss_pred             CcEEEEEcccceeEEEec-CCcceEEeeecC-C-CeEEEEe--CCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          192 EKVGIHQAEDAKLLCELD-GKKRILCAAPGE-N-GVLFTGG--EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +.|++||+++++....+. |...+.+++|++ + .++++++  .|+.|++||+.+++.+..+.  |...|.+++|++++.
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSS
T ss_pred             CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCC
Confidence            999999999999888876 888999999985 3 4666655  79999999999999998887  778999999999987


Q ss_pred             CCCCCCCCeEEEE--EcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          267 GGSTAENPYLVAS--ASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       267 ~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                               ++++  |+.||.|++||+.++.......  ...+...|.+++|+|++.+++.+..|+.++.++...
T Consensus       317 ---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          317 ---------EIMSTHGFPDNNLSIWSYSSSGLTKQVD--IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ---------EEEEEECTTTCEEEEEEEETTEEEEEEE--EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ---------eEEEEeecCCCcEEEEecCCccceeEEE--ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                     8888  5589999999999864222111  123456799999999999999999999777666543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=265.05  Aligned_cols=276  Identities=14%  Similarity=0.126  Sum_probs=224.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeE-----EecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLF-----SYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~   73 (343)
                      .|++|+.||.|++||+......    .........     ...+|..+|++++|+   +.+|++++.||.|++||+.+++
T Consensus        58 ~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  133 (408)
T 4a11_B           58 YMLSGGSDGVIVLYDLENSSRQ----SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ  133 (408)
T ss_dssp             EEEEEETTSCEEEEECCCCSSS----SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE
T ss_pred             EEEEEcCCCeEEEEECCCCccc----ceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc
Confidence            4899999999999999873211    111111111     113699999999997   5689999999999999999999


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-EEEEEeCCC
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-LALTVGRDD  152 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~  152 (343)
                      ....+. + ...+.++.+++.+  ....++++++.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++.||
T Consensus       134 ~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg  209 (408)
T 4a11_B          134 TADVFN-F-EETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS  209 (408)
T ss_dssp             EEEEEE-C-SSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred             cceecc-C-CCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence            888887 4 5889999999865  1125899999999999999999999999999999999999999998 589999999


Q ss_pred             eEEEEEccCCcee-EE----------------EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC----
Q 019326          153 CLAMVNLVRGRRS-FY----------------HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG----  210 (343)
Q Consensus       153 ~i~~wd~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~----  210 (343)
                      .|++||++++... ..                ..+...+.+++|+|++++++++ .++.+++||+.+++....+..    
T Consensus       210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  289 (408)
T 4a11_B          210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN  289 (408)
T ss_dssp             CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC
T ss_pred             cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc
Confidence            9999999877522 22                2345678999999999999999 899999999998876554431    


Q ss_pred             ---CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          211 ---KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       211 ---~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                         ..............+++++.++.|++||+.+++.+..+. +|...|++++|+|++.         +|++++.||.|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------~l~s~~~dg~i~  359 (408)
T 4a11_B          290 NSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQ---------ELYSGSRDCNIL  359 (408)
T ss_dssp             CCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTT---------EEEEEETTSCEE
T ss_pred             cccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCC---------EEEEECCCCeEE
Confidence               111222223345678888889999999999999999999 9999999999999987         999999999999


Q ss_pred             EEeccCcc
Q 019326          288 VWDVRMAI  295 (343)
Q Consensus       288 vwd~~~~~  295 (343)
                      +||+++.+
T Consensus       360 iw~~~~~~  367 (408)
T 4a11_B          360 AWVPSLYE  367 (408)
T ss_dssp             EEEECC--
T ss_pred             EEeCCCCC
Confidence            99999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-39  Score=274.76  Aligned_cols=237  Identities=10%  Similarity=0.071  Sum_probs=199.0

Q ss_pred             cCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           39 PAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ..|.++|++++|+  +++|++|+.|+.|++||+.++  +.+..+.+| ...|.+++|+|++     ++|++++.|++|++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~-----~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH-DKIVTCVDWAPKS-----NRIVTCSQDRNAYV   81 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC-SSCEEEEEECTTT-----CCEEEEETTSSEEE
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC-CceEEEEEEeCCC-----CEEEEEeCCCeEEE
Confidence            3467899999999  889999999999999999988  788888889 9999999999998     79999999999999


Q ss_pred             EECCCcc---eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce---eEEEE--cCCcceEEEEeCCCCEE
Q 019326          115 FDADPFV---LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR---SFYHK--IGKEASLIKFDGSGEKF  186 (343)
Q Consensus       115 wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~  186 (343)
                      ||+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   .....  +...+.+++|+|+++++
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            9998876   6677778999999999999999999999999999999998863   33333  56789999999999999


Q ss_pred             EEE-eCCcEEEEEcc------------------cceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCce--
Q 019326          187 FMV-TEEKVGIHQAE------------------DAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKV--  244 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~------------------~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--  244 (343)
                      +++ .|+.+++||+.                  .++.+..+.|...|.+++|++ +++|++++.||.|++||+.+++.  
T Consensus       162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            999 89999999985                  355666667888999999994 67999999999999999999987  


Q ss_pred             --eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          245 --AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       245 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                        +..+. +|..+|.+++|+|++.         +|++++.|+.+ +|+..
T Consensus       242 ~~~~~~~-~~~~~v~~~~~s~~~~---------~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          242 RALITVK-LSQLPLRSLLWANESA---------IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EECCCEE-CSSSCEEEEEEEETTE---------EEEEESSSSEE-EECCC
T ss_pred             eeeEeec-CCCCceEEEEEcCCCC---------EEEEEcCCcEE-EEEeC
Confidence              77777 8999999999999987         88888766655 77665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.8e-37  Score=268.43  Aligned_cols=276  Identities=18%  Similarity=0.275  Sum_probs=234.1

Q ss_pred             EEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           36 FSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      ....+|...|+++++++++|++|+.||.|++||+.+++.+..+.+| ...|.+++|  ++     ++|++|+.||+|++|
T Consensus       127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~-----~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY--DE-----RVIITGSSDSTVRVW  198 (435)
T ss_dssp             ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC--CS-----SEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE--CC-----CEEEEEcCCCeEEEE
Confidence            3334677889999999999999999999999999999999999999 999999999  44     699999999999999


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE----EEEcCCcceEEEEeCCCCEEEEE-e
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF----YHKIGKEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~  190 (343)
                      |+.+++.+..+.+|...|.+++|++  ..+++++.||.|++||++++....    ...+...+.++++  ++++++++ .
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999999975  499999999999999999877542    2234467777887  77888888 8


Q ss_pred             CCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCC
Q 019326          191 EEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGS  269 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  269 (343)
                      |+.|++||+++++.+..+. |...+.++.+ +++++++|+.||.|++||+++++.+..+. +|...|.++++  ++.   
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~---  347 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNK---  347 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSS---
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCC---
Confidence            9999999999999998887 7888999999 57899999999999999999999999999 99999999998  344   


Q ss_pred             CCCCCeEEEEEcCCCcEEEEeccCccccCCC----ccc-ccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          270 TAENPYLVASASSDGVICVWDVRMAIKEKPL----PLA-EAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       270 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~-~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                            +|++|+.||.|++||+.++......    .+. ...+...|.++++  ++.+++.+..|+.++.++..
T Consensus       348 ------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          348 ------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             ------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             ------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence                  9999999999999999876421110    111 1245567999998  67788888888877666543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-37  Score=262.40  Aligned_cols=274  Identities=12%  Similarity=0.109  Sum_probs=231.1

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe---eeeEeccCCCCCeEEEEEeCCCCCCCCc-eEEEeeCCCe
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS---SLGAIHHHESSSVTSLAFYTPQNLSVPR-NLFSTSADGF  111 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~s~~~dg~  111 (343)
                      ..+|.+.|++++|+  +++|++++.||.|++|++.+++   ....+..| ...|.+++|+|++     + +|++|+.||.
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-----~~~l~~~~~dg~   80 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNT-----DLQIYVGTVQGE   80 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESS-----SEEEEEEETTSC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec-CCceEEEEECCCC-----CcEEEEEcCCCe
Confidence            35899999999998  7899999999999999999876   34455577 8999999999998     8 8999999999


Q ss_pred             EEEEEC-CCcceeeeeee--ccccEEEEEEecCCCEEEEEeCCCeEEEEEccC---------CceeEEEEcCCcceEEEE
Q 019326          112 VSIFDA-DPFVLLTSVKV--HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR---------GRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       112 i~iwd~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~  179 (343)
                      |++||+ .+++. ..+..  |...|.+++|+| ++++++++.|+.|++||+++         ++.+....+...+.+++|
T Consensus        81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            999999 77654 77788  999999999999 99999999999999999988         666555567788999999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEccc-ceeE---EEecCCcceEEeeecC--CCeEEEEeCCCcEEEEECCCC------ceeE
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAED-AKLL---CELDGKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSG------KVAY  246 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~-~~~~---~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~  246 (343)
                      +|++  ++++ .++.|++||+++ +...   ....+...+.++++++  ++++++++.||.|++|+++..      +...
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            9988  6666 899999999998 5432   3334788999999986  679999999999999999887      7777


Q ss_pred             Eecccccc---------cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          247 CIEDAHSA---------RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       247 ~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                      .+. .|..         .|.+++|+|++.         +|++++.||.|++||+.++......   ..++...|.+++  
T Consensus       237 ~~~-~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~---~~~h~~~v~~~~--  301 (342)
T 1yfq_A          237 AFR-CHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKIA--  301 (342)
T ss_dssp             EEE-CCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEEC---CCCSSSEEEEEE--
T ss_pred             eee-cccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhh---hcccCCCceEec--
Confidence            887 7755         999999999887         9999999999999999987532221   122256799999  


Q ss_pred             CCCceeccccCCCC-CCCcc
Q 019326          318 STKSFKRPQIGDSA-PKGEE  336 (343)
Q Consensus       318 ~~~~~~~~~~~~~~-~~~~~  336 (343)
                      +++.+++.+..|+. .+..+
T Consensus       302 ~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          302 CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCeEEEEecCCccccccc
Confidence            99999999999987 44444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-36  Score=275.81  Aligned_cols=295  Identities=17%  Similarity=0.191  Sum_probs=242.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCC-eEEEEecC----ceEEEeeCCCeEEEEEcCCC-----
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSP-ITTVAVSG----TAAASGGTDDTIHLYDLSTS-----   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~----~~l~s~~~dg~i~iwd~~~~-----   72 (343)
                      |++++ ++.|++|++.+..        ........+.+|... |++++|+.    ++|++|+.||.|++||+.++     
T Consensus        33 l~~~~-~~~v~v~~~~~~~--------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  103 (615)
T 1pgu_A           33 IAYPC-GKSAFVRCLDDGD--------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS  103 (615)
T ss_dssp             EEEEE-TTEEEEEECCSSC--------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred             EEEec-CCeEEEEECCCCC--------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence            55555 8999999998620        011456677899999 99999974    79999999999999999754     


Q ss_pred             ---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC----CeEEEEECCCcceeeeeeeccccEEEEEEecCCC-E
Q 019326           73 ---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD----GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-L  144 (343)
Q Consensus        73 ---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~  144 (343)
                         +....+..| ...|.+++|+|++     ++|++++.+    +.|++||  .++.+..+.+|...|.+++|+|++. .
T Consensus       104 ~~~~~~~~~~~~-~~~v~~~~~s~~~-----~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (615)
T 1pgu_A          104 VEVNVKSEFQVL-AGPISDISWDFEG-----RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMR  175 (615)
T ss_dssp             EEEEEEEEEECC-SSCEEEEEECTTS-----SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             ccccccchhhcc-cccEEEEEEeCCC-----CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcE
Confidence               677788888 8999999999999     799999987    6888888  5678888999999999999999997 8


Q ss_pred             EEEEeCCCeEEEEEccCCceeEEEE-cCC---cceEEEEeCC-CCEEEEE-eCCcEEEEEcccceeEEEe-----cCCcc
Q 019326          145 ALTVGRDDCLAMVNLVRGRRSFYHK-IGK---EASLIKFDGS-GEKFFMV-TEEKVGIHQAEDAKLLCEL-----DGKKR  213 (343)
Q Consensus       145 l~~~~~d~~i~~wd~~~~~~~~~~~-~~~---~~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~-----~~~~~  213 (343)
                      +++++.|+.|++||+.+++...... +..   .+.+++|+|+ +++++++ .++.|++||+++++.+..+     .|...
T Consensus       176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  255 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  255 (615)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence            9999999999999999988776665 345   7999999999 9999998 8999999999999999998     78899


Q ss_pred             eEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccc----cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          214 ILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH----SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       214 i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      |.+++|+++.++++++.||.|++||+++++.+..+. .+    ...+.++.+. ++.         ++++++.||.|++|
T Consensus       256 v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~---------~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          256 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNG---------RIISLSLDGTLNFY  324 (615)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETT---------EEEEEETTSCEEEE
T ss_pred             eEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcccCceeEEEeC-CCC---------eEEEEECCCCEEEE
Confidence            999999966799999999999999999999988887 54    4778888886 555         99999999999999


Q ss_pred             eccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          290 DVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       290 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      |+.++......    ..+...|.++++ |+   ++.+..++.++
T Consensus       325 d~~~~~~~~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~  360 (615)
T 1pgu_A          325 ELGHDEVLKTI----SGHNKGITALTV-NP---LISGSYDGRIM  360 (615)
T ss_dssp             ETTEEEEEEEE----CCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred             ECCCCcEEEEE----eCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence            99875422111    123345666666 55   44444444443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=275.57  Aligned_cols=271  Identities=13%  Similarity=0.113  Sum_probs=226.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCe-----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSS-----   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-----   73 (343)
                      .|++|+.||.|++|++....        ........+.+|..+|++++|+   +++|++++.||.|++||+.+++     
T Consensus        81 ~l~~~~~dg~v~vw~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           81 IIAGALDNGSLELYSTNEAN--------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             CEEEEESSSCEEEECCSSTT--------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             eEEEEccCCeEEEeeccccc--------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence            47899999999999997521        1123567778999999999998   6799999999999999999886     


Q ss_pred             -eeeE---eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec------cccEEEEEEecCC-
Q 019326           74 -SLGA---IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH------KKGVNDLAVHHSG-  142 (343)
Q Consensus        74 -~~~~---~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~-  142 (343)
                       ....   +..| ...|.+++|+|++    +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+|++ 
T Consensus       153 ~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (416)
T 2pm9_A          153 YTPLTPGQSMSS-VDEVISLAWNQSL----AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS  227 (416)
T ss_dssp             CCCBCCCCSCCS-SCCCCEEEECSSC----TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred             ccccccccccCC-CCCeeEEEeCCCC----CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC
Confidence             3333   3567 8899999999994    179999999999999999999998888876      7899999999997 


Q ss_pred             CEEEEEeCCC---eEEEEEccCC-ceeEEEE--cCCcceEEEEeC-CCCEEEEE-eCCcEEEEEcccceeEEEec-CCcc
Q 019326          143 KLALTVGRDD---CLAMVNLVRG-RRSFYHK--IGKEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKR  213 (343)
Q Consensus       143 ~~l~~~~~d~---~i~~wd~~~~-~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~  213 (343)
                      .++++++.|+   .|++||++++ .......  +...+.+++|+| ++.+++++ .|+.|++||+++++.+..+. |...
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            6899999998   9999999986 4444443  667899999999 89999999 89999999999999988887 7888


Q ss_pred             eEEeeecC-C-CeEEEEeCCCcEEEEECCCCceeEEec----------------------------------ccccccEE
Q 019326          214 ILCAAPGE-N-GVLFTGGEDRSITAWDTNSGKVAYCIE----------------------------------DAHSARVK  257 (343)
Q Consensus       214 i~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~h~~~v~  257 (343)
                      +.+++|++ + .++++++.||.|++||+.++.......                                  ..|..++.
T Consensus       308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSP  387 (416)
T ss_dssp             CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSC
T ss_pred             eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCcc
Confidence            99999995 4 699999999999999998765332211                                  01566777


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +++|++++.         +|++++.||.|+||++.+.
T Consensus       388 ~~~~s~dg~---------~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          388 AAHWAFGGK---------LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCEEETTTE---------EECBCTTSSCBCCBCCCCC
T ss_pred             ceEEeeCCe---------EEEEeCCCCeEEEEEeccC
Confidence            888888876         9999999999999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=269.15  Aligned_cols=274  Identities=11%  Similarity=0.149  Sum_probs=219.8

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe-----------eeeEeccCCC------------CCeEEEEEeCCC
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS-----------SLGAIHHHES------------SSVTSLAFYTPQ   95 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~------------~~v~~l~~~~~~   95 (343)
                      |.+.|++++|+  +++|++|+.||.|++||+.+++           ....+.+| .            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH-EPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECC-CCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccc-cccccccccccccCceEEEEEcCCC
Confidence            67899999999  8999999999999999999876           57788888 7            889999999986


Q ss_pred             CCCCCceEEEeeCCCeEEEEECCCccee---------------------------------------ee-eeeccccEEE
Q 019326           96 NLSVPRNLFSTSADGFVSIFDADPFVLL---------------------------------------TS-VKVHKKGVND  135 (343)
Q Consensus        96 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~  135 (343)
                      +   ...|++++.|++|++||+.+++..                                       .. ..+|...|.+
T Consensus       106 ~---~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          106 N---AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             S---SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             C---cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            2   148999999999999998764432                                       12 3579999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCc-eeEEE--------EcCCcceEEEEeCCC-CEEEEE-eCCcEEEEEccccee
Q 019326          136 LAVHHSGKLALTVGRDDCLAMVNLVRGR-RSFYH--------KIGKEASLIKFDGSG-EKFFMV-TEEKVGIHQAEDAKL  204 (343)
Q Consensus       136 i~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~--------~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~d~~~~~~  204 (343)
                      ++|+|++++|+++ .|+.|++||+++.. .....        .+...+.+++|+|++ ++++++ .|+.|++||+++++.
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            9999999999998 79999999998443 33322        345679999999998 899988 899999999999886


Q ss_pred             ----EEEecC-Cc------------ceEEeeecC-CCeEEEEeCCCcEEEEECCC-CceeEEeccccccc----------
Q 019326          205 ----LCELDG-KK------------RILCAAPGE-NGVLFTGGEDRSITAWDTNS-GKVAYCIEDAHSAR----------  255 (343)
Q Consensus       205 ----~~~~~~-~~------------~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~h~~~----------  255 (343)
                          ...+.. ..            .|.+++|++ +.+|++++. +.|++||+++ ++++..+. +|...          
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYEN  339 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHT
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccccccccccccc
Confidence                666663 33            899999995 578888888 9999999997 88888887 77542          


Q ss_pred             -----EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC----------------------------Ccc
Q 019326          256 -----VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP----------------------------LPL  302 (343)
Q Consensus       256 -----v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------------------~~~  302 (343)
                           +..++|+|++.         +|++++.||.|++||+.++.....                            ...
T Consensus       340 ~~i~~~~~~~~s~~~~---------~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDS---------VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             SGGGCCCCEEECTTSS---------EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             cccccceEEEECCCCC---------EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                 23489999887         999999999999999987642110                            001


Q ss_pred             cccccccceeEEEcCCCCceeccccCCC
Q 019326          303 AEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       303 ~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ........|..++|+|++.+++.+..++
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce
Confidence            1223345789999999999999887765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-37  Score=260.03  Aligned_cols=245  Identities=17%  Similarity=0.233  Sum_probs=209.8

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC--CCeeeeEeccCCCCCeEEEEEeCC--CCCCCCceEEEee
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS--TSSSLGAIHHHESSSVTSLAFYTP--QNLSVPRNLFSTS  107 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~s~~  107 (343)
                      .+..+.+|.++|++++|+  +++|++|+.||.|++||+.  +++.+..+..| ...|++++|+++  +     ++|++++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~-----~~l~s~~   76 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFG-----TILASCS   76 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC-----SEEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCC-----CEEEEec
Confidence            345667999999999999  8899999999999999998  56777888889 999999999977  6     7999999


Q ss_pred             CCCeEEEEECCCcc--eeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCcee---EEEEcCCcceEEEEe
Q 019326          108 ADGFVSIFDADPFV--LLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGRRS---FYHKIGKEASLIKFD  180 (343)
Q Consensus       108 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~  180 (343)
                      .||.|++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++...   ....+...+.+++|+
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            99999999998876  77778889999999999999  999999999999999999987432   333456789999999


Q ss_pred             C-------------CCCEEEEE-eCCcEEEEEcccce----eEEEec-CCcceEEeeecC----CCeEEEEeCCCcEEEE
Q 019326          181 G-------------SGEKFFMV-TEEKVGIHQAEDAK----LLCELD-GKKRILCAAPGE----NGVLFTGGEDRSITAW  237 (343)
Q Consensus       181 ~-------------~~~~~~~~-~~~~i~~~d~~~~~----~~~~~~-~~~~i~~~~~~~----~~~l~~~~~dg~i~i~  237 (343)
                      |             ++..++++ .++.|++||++++.    ....+. |...|.+++|++    +++|++++.||.|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence            9             68999998 89999999998764    334444 788999999995    5799999999999999


Q ss_pred             ECCCCc---eeEEec-ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          238 DTNSGK---VAYCIE-DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       238 d~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      |++++.   ....+. ..|...|.+++|+|++.         +|++++.||.|++|+++.
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---------VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---------CEEEEESSSSEEEEEEEE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCC---------EEEEecCCCcEEEEeCCC
Confidence            999874   222222 14889999999999988         999999999999999984

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-37  Score=266.57  Aligned_cols=268  Identities=16%  Similarity=0.203  Sum_probs=222.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCC-------
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTS-------   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~-------   72 (343)
                      +++|+.||.|++|++....        ........+.+|.++|++++|+   +++|++|+.||.|++||+.++       
T Consensus        50 ~~~~~~~g~i~v~~~~~~~--------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~  121 (402)
T 2aq5_A           50 ICEASGGGAFLVLPLGKTG--------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR  121 (402)
T ss_dssp             EBCCSSSCCEEEEETTCCE--------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred             EEEEcCCCEEEEEECccCC--------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence            3457889999999986511        1112344567999999999997   689999999999999999988       


Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee--eeccccEEEEEEecCCCEEEEEeC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV--KVHKKGVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~  150 (343)
                      +.+..+.+| ...|.+++|+|++    ..+|++++.||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.
T Consensus       122 ~~~~~~~~h-~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          122 EPVITLEGH-TKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SCSEEEECC-SSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             CceEEecCC-CCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence            567888889 8999999999997    258999999999999999999999998  789999999999999999999999


Q ss_pred             CCeEEEEEccCCceeEEEE--cCC-cceEEEEeCCCCEEEEE----eCCcEEEEEccccee---EEEecCCcceEEeeec
Q 019326          151 DDCLAMVNLVRGRRSFYHK--IGK-EASLIKFDGSGEKFFMV----TEEKVGIHQAEDAKL---LCELDGKKRILCAAPG  220 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~  220 (343)
                      |+.|++||+++++.+....  +.. .+..+.|+|++.+++++    .++.|++||+++.+.   ...+.+...+.+++|+
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  276 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD  276 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc
Confidence            9999999999998877662  223 37899999999999998    689999999998664   3344577889999998


Q ss_pred             C-CCeEE-EEeCCCcEEEEECCCCce-eEEeccc--ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          221 E-NGVLF-TGGEDRSITAWDTNSGKV-AYCIEDA--HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       221 ~-~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      + +++++ +|+.||.|++||+.++++ +..+. .  |..+|.+++|+|++.         ++++  .|+.+++|++.++.
T Consensus       277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~-~~~~~~~v~~~~~sp~~~---------~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS-MFSSKESQRGMGYMPKRG---------LEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             TTTTEEEEEETTCSCEEEEEECSSTTCEEEEE-EECCSSCCSEEEECCGGG---------SCGG--GTEEEEEEEEETTE
T ss_pred             CCCCEEEEEEcCCCeEEEEEecCCCcceEeec-ccccCCcccceEEecccc---------ccee--cceeEEEEEcCCCc
Confidence            4 56665 566799999999998884 44444 3  568999999999986         5554  56799999998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1e-37  Score=270.99  Aligned_cols=285  Identities=12%  Similarity=0.069  Sum_probs=216.2

Q ss_pred             EEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           36 FSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      ....+|...|+||+|+   +++||+|+.||.|+|||+.+++...  .+.+| ...|++|+|+|.+    +++|++|+.||
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~----~~~l~s~s~D~  187 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLN----TNQFYASSMEG  187 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSC----TTEEEEECSSS
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCC----CCEEEEEeCCC
Confidence            3445789999999998   5789999999999999998775443  44578 8999999999853    27999999999


Q ss_pred             eEEEEECCCcceeeeeee--ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC-EEE
Q 019326          111 FVSIFDADPFVLLTSVKV--HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE-KFF  187 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  187 (343)
                      +|++||+++.........  +...+.+++|+|++++|++|+.||.|++||++.........+...|.+++|+|++. +++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEE
Confidence            999999987544333322  23467899999999999999999999999997655444445668899999999987 566


Q ss_pred             EE-eCCcEEEEEcccceeEEEe----cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccc------c
Q 019326          188 MV-TEEKVGIHQAEDAKLLCEL----DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSA------R  255 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~----~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~------~  255 (343)
                      ++ .|+.|++||+++.+....+    .|...|.+++|+ ++.+|++++.||.|++||+.+++....+. .|..      .
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  346 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLT  346 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCCCCCSSSC
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccccccccce
Confidence            66 7999999999887654433    478899999998 46799999999999999999998877776 5542      2


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEc------------CCCcEEEEeccCccccCCCcccccccccceeEE-EcCCCCce
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASAS------------SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCL-AGSSTKSF  322 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~  322 (343)
                      +....+++.+.         ++++++            .++.|++||..++....   .....+...|.++ +|+|++.+
T Consensus       347 ~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~---~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          347 PIKAAWHPRYN---------LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC---QLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCBCEECSSSS---------CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE---EECCSSCCCCCCEEEECTTSSC
T ss_pred             eEEEEEcCCCC---------EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE---EEeCCCCCcEEEEEEECCCCCE
Confidence            23345555544         444432            44689999999874221   1122344567777 69999999


Q ss_pred             eccccCCCCCCCccccC
Q 019326          323 KRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       323 ~~~~~~~~~~~~~~~~~  339 (343)
                      ++.+. ++.++.++..+
T Consensus       415 lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          415 LASAM-GYHILIWSQQE  430 (435)
T ss_dssp             EEEEC-SSEEEECCCC-
T ss_pred             EEEEc-CCcEEEEECCc
Confidence            98876 56666666544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.9e-37  Score=251.70  Aligned_cols=250  Identities=16%  Similarity=0.156  Sum_probs=202.7

Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC--cceeeeeeeccccEEEEEEecC--CCEEEEEeCC
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP--FVLLTSVKVHKKGVNDLAVHHS--GKLALTVGRD  151 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d  151 (343)
                      ..+.+| ...|.+++|+|++     ++|++|+.|++|++||+.+  .+++.++.+|.+.|.+++|+|+  +++|++++.|
T Consensus         3 ~~~~~h-~~~V~~~~~s~~g-----~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            3 VIANAH-NEMIHDAVMDYYG-----KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EECCSC-SSCEEEEEECTTS-----SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             eeccCC-cCceEEEEECCCC-----CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            345678 8999999999999     8999999999999999964  4678899999999999999863  8899999999


Q ss_pred             CeEEEEEccCCc--eeEE-EEcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEccccee--EEEe-cCCcceEEeeecCC
Q 019326          152 DCLAMVNLVRGR--RSFY-HKIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDAKL--LCEL-DGKKRILCAAPGEN  222 (343)
Q Consensus       152 ~~i~~wd~~~~~--~~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~~~--~~~~-~~~~~i~~~~~~~~  222 (343)
                      ++|++||+++++  .... ..+...+.+++|+|+  +.+++++ .|+.|++||+++...  ...+ .|...+.+++|++.
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999998874  2222 235678999999997  7889888 899999999987632  2233 48889999999853


Q ss_pred             --------------CeEEEEeCCCcEEEEECCCCc----eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC
Q 019326          223 --------------GVLFTGGEDRSITAWDTNSGK----VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG  284 (343)
Q Consensus       223 --------------~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg  284 (343)
                                    ++|++|+.|+.|++||+++++    ....+. +|...|.+++|+|++.      .+.+|++++.|+
T Consensus       157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~------~~~~las~s~D~  229 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVL------LRSYMASVSQDR  229 (297)
T ss_dssp             C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCS------SSEEEEEEETTS
T ss_pred             cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCC------CceEEEEEECCC
Confidence                          589999999999999998776    556777 9999999999999841      112999999999


Q ss_pred             cEEEEeccCccccCCC-cccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          285 VICVWDVRMAIKEKPL-PLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       285 ~i~vwd~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      +|++||+++....... .+....+...|.+++|+|++.+++.+..|+.++.++..
T Consensus       230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999999874211100 11112345679999999999999999999988776543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=263.15  Aligned_cols=273  Identities=11%  Similarity=0.129  Sum_probs=213.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC------------CCeEEEEec--C--ceEEEeeCCCeEE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL------------SPITTVAVS--G--TAAASGGTDDTIH   65 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~--~--~~l~s~~~dg~i~   65 (343)
                      .|++|+.||.|++|++....... ............+.+|.            .+|++++|+  +  ..|++++.|+.|+
T Consensus        42 ~la~g~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~  120 (447)
T 3dw8_B           42 LLATGDKGGRVVIFQQEQENKIQ-SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK  120 (447)
T ss_dssp             EEEEEETTSEEEEEEECC------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred             EEEEEcCCCeEEEEEecCCCCCC-cccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence            58999999999999998632100 01112345677788998            889999999  4  6899999999999


Q ss_pred             EEEcCCCeee---------------------------------------eE-eccCCCCCeEEEEEeCCCCCCCCceEEE
Q 019326           66 LYDLSTSSSL---------------------------------------GA-IHHHESSSVTSLAFYTPQNLSVPRNLFS  105 (343)
Q Consensus        66 iwd~~~~~~~---------------------------------------~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s  105 (343)
                      +||+.+++..                                       .. ..+| ...|.+++|+|++     ++|++
T Consensus       121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~-----~~l~s  194 (447)
T 3dw8_B          121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH-TYHINSISINSDY-----ETYLS  194 (447)
T ss_dssp             EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC-SSCCCEEEECTTS-----SEEEE
T ss_pred             EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC-CcceEEEEEcCCC-----CEEEE
Confidence            9999865432                                       12 2467 8999999999998     78999


Q ss_pred             eeCCCeEEEEECCC-cceee-------eeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCce----eEEEEcCC
Q 019326          106 TSADGFVSIFDADP-FVLLT-------SVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRR----SFYHKIGK  172 (343)
Q Consensus       106 ~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~  172 (343)
                      | .|+.|++||+++ .+.+.       .+.+|...|.+++|+|++ ++|++++.||.|++||+++++.    ........
T Consensus       195 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (447)
T 3dw8_B          195 A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE  273 (447)
T ss_dssp             E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-
T ss_pred             e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC
Confidence            8 799999999984 44444       355789999999999998 9999999999999999999875    44444332


Q ss_pred             -------------cceEEEEeCCCCEEEEEeCCcEEEEEccc-ceeEEEecCCcc----------------eEEeeec-C
Q 019326          173 -------------EASLIKFDGSGEKFFMVTEEKVGIHQAED-AKLLCELDGKKR----------------ILCAAPG-E  221 (343)
Q Consensus       173 -------------~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~----------------i~~~~~~-~  221 (343)
                                   .+.+++|+|++++++++.++.|++||+++ ++.+..+..+..                +..++|+ +
T Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~  353 (447)
T 3dw8_B          274 DPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS  353 (447)
T ss_dssp             ----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT
T ss_pred             CccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCC
Confidence                         79999999999999999559999999997 787777764433                2337888 4


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEec-------------------------------ccccccEEEEEEEecCCCCCC
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIE-------------------------------DAHSARVKGIVVLTKNDGGST  270 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------~~h~~~v~~~~~~~~~~~~~~  270 (343)
                      +.+|++|+.||.|++||+.+++.+....                               ..+...|..++|+|++.    
T Consensus       354 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~----  429 (447)
T 3dw8_B          354 DSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN----  429 (447)
T ss_dssp             SSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS----
T ss_pred             CCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC----
Confidence            6789999999999999999887653111                               02345788999999987    


Q ss_pred             CCCCeEEEEEcCCCcEEEEecc
Q 019326          271 AENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                           +|++++.++ +++|.-+
T Consensus       430 -----~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          430 -----IIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             -----EEEEECSSC-EEEEECC
T ss_pred             -----EEEEEecce-eeeeccc
Confidence                 999888775 7888654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.4e-35  Score=254.11  Aligned_cols=272  Identities=16%  Similarity=0.186  Sum_probs=224.9

Q ss_pred             CeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec--cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           44 PITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH--HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        44 ~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      .++.|+|+ ++.|++|. |++|+|||..+++....+.  .| ...|++|+|+|++     ++|++|+.||+|++||+.++
T Consensus       107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~-~~~V~sv~fspdg-----~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEG-----NYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT
T ss_pred             cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC-CCcEEEEEECCCC-----CEEEEEECCCeEEEEEcCCC
Confidence            46779999 77777765 8999999999998887665  45 6789999999999     89999999999999999999


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      +++..+.+|...+.+++++  +..|++++.|+.+++||........  ...+...+..+.++|++.+++++ .|+.+++|
T Consensus       180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~  257 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  257 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence            9999999999999988876  5699999999999999998765432  33456788999999999999999 89999999


Q ss_pred             Eccccee----EE-EecCCcceEEeeecC--CCeEEE--EeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          198 QAEDAKL----LC-ELDGKKRILCAAPGE--NGVLFT--GGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       198 d~~~~~~----~~-~~~~~~~i~~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      +..+++.    +. ...+...|.+++|++  ..++++  |+.|++|++||+.+++....+.  +...+.++.|++++.  
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~--  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYK--  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTT--
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCC--
Confidence            9987653    22 333788999999984  345554  4579999999999999998887  556889999999887  


Q ss_pred             CCCCCCeEEEEEc--CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          269 STAENPYLVASAS--SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       269 ~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                             .+++++  .|+.|+|||+.++......    ..+...|++++|+|++.+++.+..|+.++.++..+
T Consensus       334 -------~lv~~sg~~d~~I~iwd~~~~~~v~~l----~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          334 -------ELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -------EEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -------eEEEEEecCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence                   666554  7999999999987532211    13466899999999999999999999887766543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-35  Score=249.40  Aligned_cols=258  Identities=14%  Similarity=0.159  Sum_probs=219.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEc-CCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDL-STSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~-~~~~~~~~   77 (343)
                      .|++|+.||.|++|++...       ..  ......+.+|...|++++|+  ++ +|++|+.||.|++||+ .+++. ..
T Consensus        25 ~l~~~~~d~~v~iw~~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~   94 (342)
T 1yfq_A           25 LLLITSWDGSLTVYKFDIQ-------AK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QA   94 (342)
T ss_dssp             EEEEEETTSEEEEEEEETT-------TT--EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EE
T ss_pred             EEEEEcCCCeEEEEEeCCC-------Cc--cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Ee
Confidence            4889999999999999872       21  12233445899999999998  78 8999999999999999 77654 66


Q ss_pred             ecc--CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---------cceeeeeeeccccEEEEEEecCCCEEE
Q 019326           78 IHH--HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---------FVLLTSVKVHKKGVNDLAVHHSGKLAL  146 (343)
Q Consensus        78 ~~~--~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~  146 (343)
                      +..  | ...|.+++|+| +     .+|++++.|+.|++||+++         ++++..+. |...|.+++|+|++  ++
T Consensus        95 ~~~~~~-~~~v~~l~~~~-~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~  164 (342)
T 1yfq_A           95 LTNNEA-NLGICRICKYG-D-----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI  164 (342)
T ss_dssp             CBSCCC-CSCEEEEEEET-T-----TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred             ccccCC-CCceEEEEeCC-C-----CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence            777  8 89999999999 7     7999999999999999987         77777777 88999999999986  99


Q ss_pred             EEeCCCeEEEEEccC-Ccee---EEEEcCCcceEEEEeC-CCCEEEEE-eCCcEEEEEcccc------eeEEEec-CCc-
Q 019326          147 TVGRDDCLAMVNLVR-GRRS---FYHKIGKEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDA------KLLCELD-GKK-  212 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~------~~~~~~~-~~~-  212 (343)
                      +++.|+.|++||+++ +...   ....+...+.+++|+| ++++++++ .++.+++|+++..      +....+. |.. 
T Consensus       165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T 1yfq_A          165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc
Confidence            999999999999998 5532   2334457899999999 99999999 8999999999876      6666665 433 


Q ss_pred             --------ceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccc-cccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          213 --------RILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAH-SARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       213 --------~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                              .|.+++|++ +++|++++.||.|++||+.+++.+..+. +| ..+|.+++  +++.         +|++++.
T Consensus       245 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~~~---------~l~s~s~  312 (342)
T 1yfq_A          245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CSDN---------ILCLATS  312 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--ECSS---------EEEEEEE
T ss_pred             ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--CCCC---------eEEEEec
Confidence                    899999994 6799999999999999999999999998 77 99999999  7776         9999999


Q ss_pred             CCc-EEEEec
Q 019326          283 DGV-ICVWDV  291 (343)
Q Consensus       283 dg~-i~vwd~  291 (343)
                      ||. .+.|..
T Consensus       313 Dg~~~~~~~~  322 (342)
T 1yfq_A          313 DDTFKTNAAI  322 (342)
T ss_dssp             CTHHHHCSSS
T ss_pred             CCcccccccc
Confidence            998 555554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-36  Score=256.79  Aligned_cols=277  Identities=11%  Similarity=0.081  Sum_probs=216.9

Q ss_pred             CCCeEEEEec--CceEEEeeCC-------CeEEEEEcCCCee----------eeEeccCCCCCeEEEEEeCCCCCCCCce
Q 019326           42 LSPITTVAVS--GTAAASGGTD-------DTIHLYDLSTSSS----------LGAIHHHESSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~d-------g~i~iwd~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~~~~~~  102 (343)
                      ..||++++|+  +.+|++|+.+       +.|++|++..+..          ...+..| ...|.++++.++       .
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~-~~~v~s~~~~~~-------~   85 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN-DDSPTAIDASKG-------I   85 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT-SCCCCEEEEETT-------E
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC-CCceEEEEeCCC-------E
Confidence            4689999998  7889988754       3599999876532          1234566 778888887653       4


Q ss_pred             EEEe-----------eCCCeEEEEECCCcceeee-e--------eeccccEEEEEEecCCCEEEEEe--CCCeEEEEEcc
Q 019326          103 LFST-----------SADGFVSIFDADPFVLLTS-V--------KVHKKGVNDLAVHHSGKLALTVG--RDDCLAMVNLV  160 (343)
Q Consensus       103 l~s~-----------~~dg~i~iwd~~~~~~~~~-~--------~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~wd~~  160 (343)
                      +++|           +.|+.+++|++.+...... .        ..+...+.+++|+|||+++++++  .|++|++||++
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence            4444           5578899999865432211 1        12344689999999999887554  68999999999


Q ss_pred             CCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec---CCcceEEeeec-CCCeEEEEeCCC----
Q 019326          161 RGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD---GKKRILCAAPG-ENGVLFTGGEDR----  232 (343)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~-~~~~l~~~~~dg----  232 (343)
                      +++.+....+...|..++|+|++++++++.++.+.+|+..+++......   |...+.+++|+ ++.++++++.|+    
T Consensus       166 ~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~  245 (365)
T 4h5i_A          166 DLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI  245 (365)
T ss_dssp             TTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred             CCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence            9999988888899999999999999999988888999888877665433   67889999998 567888888877    


Q ss_pred             cEEEEECCCCce----eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccc
Q 019326          233 SITAWDTNSGKV----AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTN  308 (343)
Q Consensus       233 ~i~i~d~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  308 (343)
                      .+++|++.....    ...+. +|...|++++|+|++.         +||+|+.|++|+|||+++++....   ....+.
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~---~~~gH~  312 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKI---FKQAHS  312 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEE---ETTSSS
T ss_pred             EEeecccccceecceeeeeec-CCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEE---ecCccc
Confidence            688899876643    34555 8999999999999987         999999999999999998752221   112356


Q ss_pred             cceeEEEcCCCCceeccccCCCCCCCccccC
Q 019326          309 SRLTCLAGSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       309 ~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      ..|++++||||+++++.++.|+.++.++.++
T Consensus       313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            6799999999999999999999998887643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-36  Score=277.31  Aligned_cols=242  Identities=18%  Similarity=0.221  Sum_probs=207.3

Q ss_pred             EEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC--CCeeeeEeccCCCCCeEEEEEeCC--CCCCCCceEEEeeCC
Q 019326           36 FSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS--TSSSLGAIHHHESSSVTSLAFYTP--QNLSVPRNLFSTSAD  109 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~s~~~d  109 (343)
                      ..+.+|.++|++++|+  +++|++|+.||.|++||+.  +++.+..+.+| ...|.+++|+|+  +     ++|++|+.|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~-----~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFG-----TILASCSYD   76 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSC-----SEEEEEETT
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCC-----CEEEEEeCC
Confidence            3567999999999998  8899999999999999998  55778888899 999999999987  6     799999999


Q ss_pred             CeEEEEECCCcc--eeeeeeeccccEEEEEEecC--CCEEEEEeCCCeEEEEEccCCc---eeEEEEcCCcceEEEEeC-
Q 019326          110 GFVSIFDADPFV--LLTSVKVHKKGVNDLAVHHS--GKLALTVGRDDCLAMVNLVRGR---RSFYHKIGKEASLIKFDG-  181 (343)
Q Consensus       110 g~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~-  181 (343)
                      |.|++||+.+++  .+..+..|...|.+++|+|+  ++.+++++.||.|++||++++.   ......+...+.+++|+| 
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            999999998876  77788889999999999999  9999999999999999998873   233445567899999999 


Q ss_pred             ------------CCCEEEEE-eCCcEEEEEcccc----eeEEEec-CCcceEEeeecC----CCeEEEEeCCCcEEEEEC
Q 019326          182 ------------SGEKFFMV-TEEKVGIHQAEDA----KLLCELD-GKKRILCAAPGE----NGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       182 ------------~~~~~~~~-~~~~i~~~d~~~~----~~~~~~~-~~~~i~~~~~~~----~~~l~~~~~dg~i~i~d~  239 (343)
                                  ++..++++ .|+.|++||++++    .....+. |..+|.+++|++    +.++++|+.||.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        48888888 8999999999887    4444554 789999999994    479999999999999999


Q ss_pred             CCCc-----eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          240 NSGK-----VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       240 ~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++++     ...... .|...|++++|+|++.         +|++++.||.|++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~---------~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          237 DNEQGPWKKTLLKEE-KFPDVLWRASWSLSGN---------VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSSSSCCBCCBSSSS-CCSSCCCCEEECTTTC---------CEEEECSSSCEECCBCCS
T ss_pred             CCCCCcceeEEeccC-CCCCceEEEEEcCCCC---------EEEEEcCCCEEEEEecCC
Confidence            8864     222333 5889999999999887         999999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-35  Score=255.16  Aligned_cols=269  Identities=14%  Similarity=0.142  Sum_probs=219.0

Q ss_pred             CeEEEEecCc---eEEEeeCCCeEEEEEcCCCe----eeeEeccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCCeEEEE
Q 019326           44 PITTVAVSGT---AAASGGTDDTIHLYDLSTSS----SLGAIHHHESSSVTSLAFYT-PQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        44 ~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      ....+++++.   ++++++.||.|++|++.+..    .+..+.+| ...|++++|+| ++     ++|++|+.||+|++|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~-----~~l~s~s~dg~v~vw  109 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH-TAPVLDIAWCPHND-----NVIASGSEDCTVMVW  109 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCC-SSCEEEEEECTTCT-----TEEEEEETTSEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecC-CCCEEEEEeCCCCC-----CEEEEEeCCCeEEEE
Confidence            3445777743   34457899999999996642    34456778 99999999999 66     799999999999999


Q ss_pred             ECCCc-------ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEE---cCCcceEEEEeCCCC
Q 019326          116 DADPF-------VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK---IGKEASLIKFDGSGE  184 (343)
Q Consensus       116 d~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~  184 (343)
                      |+.++       +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++......   +...+.+++|+|++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence            99887       6788899999999999999998 799999999999999999998877662   567899999999999


Q ss_pred             EEEEE-eCCcEEEEEcccceeEEEe-c-CCcc-eEEeeecC-CCeEEEE---eCCCcEEEEECCCCce-eEEeccccccc
Q 019326          185 KFFMV-TEEKVGIHQAEDAKLLCEL-D-GKKR-ILCAAPGE-NGVLFTG---GEDRSITAWDTNSGKV-AYCIEDAHSAR  255 (343)
Q Consensus       185 ~~~~~-~~~~i~~~d~~~~~~~~~~-~-~~~~-i~~~~~~~-~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~h~~~  255 (343)
                      +++++ .|+.|++||+++++.+..+ . |... +.++.|++ +.++++|   +.|+.|++||+++++. +......|...
T Consensus       190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  269 (402)
T 2aq5_A          190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG  269 (402)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS
T ss_pred             EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc
Confidence            99999 8999999999999998887 3 5444 88899985 5577777   6899999999998764 33333357888


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEE-EEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVA-SASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      +.+++|+|++.         +|+ +++.||.|++||+.++.. ....+....+...|.+++|+|++.+++.+.+
T Consensus       270 v~~~~~s~~~~---------~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          270 VLLPFFDPDTN---------IVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             CEEEEEETTTT---------EEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred             eeEEEEcCCCC---------EEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEecccccceecce
Confidence            99999999987         775 666899999999997641 0112333345678999999999999876544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-36  Score=250.95  Aligned_cols=248  Identities=17%  Similarity=0.126  Sum_probs=195.5

Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeeeeeccccEEEEEEec--CCCEEEEEeCCCe
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSVKVHKKGVNDLAVHH--SGKLALTVGRDDC  153 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~  153 (343)
                      +.+| ...|++++|+|++     ++|++|+.|++|++||+.+++  .+..+.+|...|.+++|+|  ++++|++++.|++
T Consensus         9 ~~~H-~~~V~~v~~s~~g-----~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~   82 (316)
T 3bg1_A            9 DTSH-EDMIHDAQMDYYG-----TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECGGG-----CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred             cccc-cCeEEEeeEcCCC-----CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence            4567 9999999999998     899999999999999997764  5678899999999999986  4889999999999


Q ss_pred             EEEEEccCCc--eeEE-EEcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEcccceeE---EEec-CCcceEEeeecCC-
Q 019326          154 LAMVNLVRGR--RSFY-HKIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDAKLL---CELD-GKKRILCAAPGEN-  222 (343)
Q Consensus       154 i~~wd~~~~~--~~~~-~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~~~~---~~~~-~~~~i~~~~~~~~-  222 (343)
                      |++||+++++  .... ..+...+.+++|+|+  +.+++++ .|+.|++||++.....   ..+. |...+.++.|++. 
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            9999999874  2222 235678999999998  7889998 8999999999876422   2222 6778888888753 


Q ss_pred             -----------------CeEEEEeCCCcEEEEECCCC---ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          223 -----------------GVLFTGGEDRSITAWDTNSG---KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       223 -----------------~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                                       .+|++|+.|+.|++||++..   +.+..+. +|...|.+++|+|++.     .++.+|++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~-----~~~~~las~s~  236 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIG-----LPTSTIASCSQ  236 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSS-----CSCCEEEEEET
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCC-----CCCceEEEEcC
Confidence                             58999999999999999755   3566677 9999999999999851     01128999999


Q ss_pred             CCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          283 DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       283 dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ||+|++|++++.............+...|.+++|+|++.+++.+..|+.++.++.
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            9999999998742111111111234568999999999999999999998876654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=239.55  Aligned_cols=274  Identities=15%  Similarity=0.170  Sum_probs=224.6

Q ss_pred             CeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec--cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           44 PITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH--HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        44 ~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ..++|+|+ ++.||+| .|++|+|||+.+++.+..+.  .| ...|++++|+|++     ++|++|+.||+|++||++++
T Consensus        27 y~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~-~~~V~~v~~~~~~-----~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           27 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP-GEYISSVAWIKEG-----NYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             TCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST-TCCEEEEEECTTS-----SEEEEEETTSEEEEEETTTT
T ss_pred             cceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC-CCeEEEEEECCCC-----CEEEEEECCCcEEEeecCCc
Confidence            36789999 6677665 59999999999999888775  45 7789999999999     89999999999999999999


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      +++..+.+|...+.++.+.  +..+++++.++.+++|+........  ...+...+..+.+.+++++++++ .|+.|++|
T Consensus       100 ~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence            9999999999988876655  5699999999999999998765433  33456778999999999999999 89999999


Q ss_pred             EcccceeE-----EEecCCcceEEeeecC--CCe--EEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          198 QAEDAKLL-----CELDGKKRILCAAPGE--NGV--LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       198 d~~~~~~~-----~~~~~~~~i~~~~~~~--~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      |+++++..     ....+...+.++.+.+  ...  +++++.++.|++||...........  +...+..+.+++.+.  
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~--  253 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYK--  253 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTT--
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeeccccc--
Confidence            99886532     2223677899998874  233  3467788999999999888777665  788899999999887  


Q ss_pred             CCCCCCeEEEEE--cCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccccCcc
Q 019326          269 STAENPYLVASA--SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASME  341 (343)
Q Consensus       269 ~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  341 (343)
                             .++++  +.|+.|++||++++......    ..+...|++++|+|++.+++.+..|+.++.++..+.+
T Consensus       254 -------~~~~~sg~~d~~i~iwd~~~~~~~~~l----~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          254 -------ELISGHGFAQNQLVIWKYPTMAKVAEL----KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             -------EEEEEECTTTCCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             -------ceEEEEEcCCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence                   55554  48999999999987532211    1246689999999999999999999999988876654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=265.51  Aligned_cols=271  Identities=11%  Similarity=0.023  Sum_probs=205.1

Q ss_pred             CCCCeEEEEec--C---------ceEEE-------------------eeCCCeEEEEEcCCCeee----eEeccCCCCCe
Q 019326           41 HLSPITTVAVS--G---------TAAAS-------------------GGTDDTIHLYDLSTSSSL----GAIHHHESSSV   86 (343)
Q Consensus        41 h~~~v~~l~~~--~---------~~l~s-------------------~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v   86 (343)
                      +.++|.+|+|+  +         ++||+                   ++.|++|+|||+.+++..    ..+..| .+.|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~-~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS-FGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC-CCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec-CCcE
Confidence            56778888887  3         45555                   557899999999887643    335556 7899


Q ss_pred             EEEEEeCCCCC-CCCceEEEeeCCCeEEEEECCCcce-----------eeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           87 TSLAFYTPQNL-SVPRNLFSTSADGFVSIFDADPFVL-----------LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        87 ~~l~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      .+++|+|++.. ..+.+|++++.||+|++||+.+++.           ...+.+|...|.+++|+++ ..|++|+.||+|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence            99999997210 0126999999999999999976532           2467789999999999986 489999999999


Q ss_pred             EEEEccCCcee-E-EEEcCCcceEE--EEeCCC-CEEEEE-eCCcEEEEEcccceeEEEec-CC--cceEEeeecC-CCe
Q 019326          155 AMVNLVRGRRS-F-YHKIGKEASLI--KFDGSG-EKFFMV-TEEKVGIHQAEDAKLLCELD-GK--KRILCAAPGE-NGV  224 (343)
Q Consensus       155 ~~wd~~~~~~~-~-~~~~~~~~~~~--~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~--~~i~~~~~~~-~~~  224 (343)
                      ++||++++... . ...+...|.++  .++|++ .+|+++ .|+.+++||+++++....+. |.  ..+.+++|++ +..
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~  369 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS  369 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe
Confidence            99999977432 2 34466789988  567887 888888 89999999999987765554 22  3478899996 678


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccc
Q 019326          225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAE  304 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  304 (343)
                      +++++.|++|++||++++..+..+. +|...|++++|+|++.         +|++|+.||+|++||+.............
T Consensus       370 l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          370 YIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHP---------MVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             EEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCC---------BCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             EEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCC---------eEEEEECCCEEEEEechHhhccccccCcc
Confidence            9999999999999999999888888 8999999999999887         99999999999999986531100000000


Q ss_pred             cccccceeEEEcCCCCcee
Q 019326          305 AKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       305 ~~~~~~i~~~~~s~~~~~~  323 (343)
                      ......+.+++++|++..+
T Consensus       440 ~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEE
T ss_pred             ceeeeEEEEeccCCCCCeE
Confidence            1122257899999998743

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.4e-36  Score=256.37  Aligned_cols=299  Identities=17%  Similarity=0.130  Sum_probs=234.0

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEec------
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIH------   79 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~------   79 (343)
                      ++.+++|++..            ......+.+|.++|++++|+   +++|++|+.||.|++||+.+++....+.      
T Consensus        22 ~~~~~v~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   89 (408)
T 4a11_B           22 ESTRRVLGLEL------------NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS   89 (408)
T ss_dssp             HHHHHHHTEEE------------CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE
T ss_pred             cCcceeecccc------------CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc
Confidence            45567777765            23345567899999999997   6899999999999999999887665553      


Q ss_pred             -------cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC---CEEEEEe
Q 019326           80 -------HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG---KLALTVG  149 (343)
Q Consensus        80 -------~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~  149 (343)
                             .| ...|.+++|+|++    +.+|++++.||.|++||+.+++....+. +...+.++.+.|.+   .++++++
T Consensus        90 ~~~~~~~~~-~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B           90 IGRDHPDVH-RYSVETVQWYPHD----TGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             ECTTCTTCC-SSCEEEEEECTTC----TTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE
T ss_pred             ccccccccC-CCcEEEEEEccCC----CcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc
Confidence                   46 8999999999944    2799999999999999999988888877 77889999999854   5999999


Q ss_pred             CCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCE-EEEE-eCCcEEEEEcccce-eEEEe----------------c
Q 019326          150 RDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEK-FFMV-TEEKVGIHQAEDAK-LLCEL----------------D  209 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~d~~~~~-~~~~~----------------~  209 (343)
                      .|+.|++||+++++...... +...+.+++|+|++.. ++++ .++.|++||++++. ....+                .
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA  243 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence            99999999999988766655 5678999999999984 7777 89999999998765 33332                3


Q ss_pred             CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEeccccc-----ccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          210 GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS-----ARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       210 ~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      |...|.+++|++ +++|++++.||.|++||+.+++....+. .+.     ..+..........         .+++++.|
T Consensus       244 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  313 (408)
T 4a11_B          244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY-GKVCNNSKKGLKFTVSCGCSS---------EFVFVPYG  313 (408)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCC-CCCCCCCSSCCCCEECCSSSS---------CEEEEEET
T ss_pred             ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecc-ccccccccccceeEEecCCCc---------eEEEEecC
Confidence            678899999994 5799999999999999999987665443 221     1111111111122         67777889


Q ss_pred             CcEEEEeccCccccCCCccccc-ccccceeEEEcCCCCceeccccCCCCCCCccccCc
Q 019326          284 GVICVWDVRMAIKEKPLPLAEA-KTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      +.|++||+.++...     ..+ .+...|.+++|+|++.+++.+..|+.++.++....
T Consensus       314 ~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          314 STIAVYTVYSGEQI-----TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TEEEEEETTTCCEE-----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             CEEEEEECcCCcce-----eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            99999999986422     222 34567999999999999999999998776665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.9e-33  Score=240.92  Aligned_cols=262  Identities=16%  Similarity=0.169  Sum_probs=222.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .+++++.|+.|++||+..            .+....+..|. .+.+++|+  ++++ ++++.|+.|++||+.+++.+..+
T Consensus         4 l~vs~~~d~~v~v~d~~~------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~   70 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTS------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (391)
T ss_dssp             EEEEETTTTEEEEEETTT------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCC------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence            478899999999999986            24445556564 58999998  6665 67779999999999999999988


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEE-EEEeCCCeEEE
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLA-LTVGRDDCLAM  156 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~  156 (343)
                      ..+  ..+.+++|+|++     ++| ++++.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++
T Consensus        71 ~~~--~~v~~~~~spdg-----~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           71 PAG--SSPQGVAVSPDG-----KQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (391)
T ss_dssp             ECS--SSEEEEEECTTS-----SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ECC--CCccceEECCCC-----CEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence            877  499999999998     556 4556779999999999988888774 4578999999999877 67888999999


Q ss_pred             EEccCCceeEEEEcCCcceEEEEeCCCCEEE-EE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEe---C
Q 019326          157 VNLVRGRRSFYHKIGKEASLIKFDGSGEKFF-MV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGG---E  230 (343)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~---~  230 (343)
                      ||+++++..........+..++|+|+++.++ ++ .++.|++||+++++....+.+...+.++++++ ++++++++   .
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             EECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcC
Confidence            9999999888888788889999999999885 44 78899999999999999988888999999984 56777777   6


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE-EEEcCCCcEEEEeccCcc
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV-ASASSDGVICVWDVRMAI  295 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~  295 (343)
                      ++.|++||+.+++.+..+. .|. .+.+++|+|++.         +| ++++.|+.|++||+.++.
T Consensus       223 ~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~---------~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIP-VGP-DPAGIAVTPDGK---------KVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEE-CCS-SEEEEEECTTSS---------EEEEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEECCCCeEEEEEe-cCC-CccEEEEccCCC---------EEEEEcCCCCEEEEEECCCCc
Confidence            8999999999999988888 444 578999999886         66 677899999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-34  Score=248.94  Aligned_cols=244  Identities=16%  Similarity=0.229  Sum_probs=207.8

Q ss_pred             EecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCC----------CeeeeEeccCCCCCeEEEEEeCCCCCCCCc-e
Q 019326           37 SYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLST----------SSSLGAIHHHESSSVTSLAFYTPQNLSVPR-N  102 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~  102 (343)
                      ....|.+.|++++|+   +.+|++++.||.|++|++.+          .+.+..+..| ...|.+++|+|++     . +
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~-----~~~  196 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGYGLSWNPNL-----NGY  196 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCCCEEECTTS-----TTE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC-CCCeEEEEeCCCC-----CCe
Confidence            345799999999998   46899999999999999987          5777888888 8999999999998     5 9


Q ss_pred             EEEeeCCCeEEEEECCCcce-------eeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEEEccCC---ceeEEE-Ec
Q 019326          103 LFSTSADGFVSIFDADPFVL-------LTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRG---RRSFYH-KI  170 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~-~~  170 (343)
                      |++|+.||.|++||+..+..       ...+..|...|.+++|+| ++.+|++++.||.|++||++++   +..... .+
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            99999999999999987322       456678999999999999 6789999999999999999987   333333 55


Q ss_pred             CCcceEEEEeCCCC-EEEEE-eCCcEEEEEccc-ceeEEEec-CCcceEEeeecCC--CeEEEEeCCCcEEEEECCC---
Q 019326          171 GKEASLIKFDGSGE-KFFMV-TEEKVGIHQAED-AKLLCELD-GKKRILCAAPGEN--GVLFTGGEDRSITAWDTNS---  241 (343)
Q Consensus       171 ~~~~~~~~~~~~~~-~~~~~-~~~~i~~~d~~~-~~~~~~~~-~~~~i~~~~~~~~--~~l~~~~~dg~i~i~d~~~---  241 (343)
                      ...+.+++|+|++. .++++ .++.|++||+++ ...+..+. |...|.+++|++.  .+|++++.||.|++||+..   
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            68899999999987 56677 899999999998 45666666 8899999999953  4799999999999999986   


Q ss_pred             -----------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          242 -----------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       242 -----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                                 .+.+..+. +|...|++++|+|++..        +|++++.||.|+||++....
T Consensus       357 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~--------~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPW--------IICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTT--------EEEEEETTSEEEEEEECHHH
T ss_pred             ccCccccccCCcceEEEcC-CCCCCceEEEECCCCCC--------EEEEEECCCCEEEeEccccc
Confidence                       35666777 89999999999998752        79999999999999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.8e-34  Score=243.76  Aligned_cols=279  Identities=12%  Similarity=0.093  Sum_probs=209.2

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCC
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSAD  109 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~d  109 (343)
                      .++..+..|..+|++++|+  +++|++|+.++ +++|++.+++.......   ..+..+++.+..     +.+ ++++.|
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~d   80 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRMLHRT-----NYVAFVTGVK   80 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEECTTS-----SEEEEECSST
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEcCCC-----CEEEEEECCc
Confidence            4455667899999999999  88899888775 78999998776655433   347778888877     455 678889


Q ss_pred             CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC-ceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          110 GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG-RRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      ++|++||..+++++..+. +...|.+++|+++.  ++++ .++.|++||+.++ +.+.....  +...+++++  ..+++
T Consensus        81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEE
T ss_pred             cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEE
Confidence            999999999999998887 67799999999873  4443 4789999999988 55444333  455677777  55555


Q ss_pred             --E-eCCcEEEEEcccce---------------e-EEEec-CCcceEEeeecC-CCeEEEEeCCCc-EEEEECCCCceeE
Q 019326          189 --V-TEEKVGIHQAEDAK---------------L-LCELD-GKKRILCAAPGE-NGVLFTGGEDRS-ITAWDTNSGKVAY  246 (343)
Q Consensus       189 --~-~~~~i~~~d~~~~~---------------~-~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~-i~i~d~~~~~~~~  246 (343)
                        + .++.|++||+++++               + +..+. |..+|.+++|++ +.+|++|+.||+ |++||+++++.+.
T Consensus       153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~  232 (355)
T 3vu4_A          153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR  232 (355)
T ss_dssp             EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred             eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence              4 78999999999865               1 44444 889999999994 679999999998 9999999999999


Q ss_pred             Eeccc-ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccc-----------------c--c
Q 019326          247 CIEDA-HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAE-----------------A--K  306 (343)
Q Consensus       247 ~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~--~  306 (343)
                      .+..+ |...|.+++|+|++.         +|++++.|++|++||++.+...+...+..                 .  .
T Consensus       233 ~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          233 EFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             EEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             EEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            99744 999999999999887         99999999999999998763222111100                 0  0


Q ss_pred             cccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          307 TNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       307 ~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ...+...++|++++.+++.+..++..+.++.
T Consensus       304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          304 KHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             TTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            1123477999999999999998886655443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=248.92  Aligned_cols=270  Identities=13%  Similarity=0.110  Sum_probs=217.6

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe---eeeEeccCC----------------------------------
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS---SLGAIHHHE----------------------------------   82 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~----------------------------------   82 (343)
                      ..++.+++|+  |++|++ +.++.|++||+.+++   .+..+..+.                                  
T Consensus         4 ~~p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999998  665554 467899999999998   555554320                                  


Q ss_pred             -------------------CCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECC--Ccceeeeee--eccccEEEEEE
Q 019326           83 -------------------SSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDAD--PFVLLTSVK--VHKKGVNDLAV  138 (343)
Q Consensus        83 -------------------~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~  138 (343)
                                         ...|.+++|+|++     ++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-----SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTS-----SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCC-----CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence                               2369999999999     675 899999999999998  888888886  56689999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCcee-----EEEEcCCcceEEEEeCC---CCEEEEE-eCCcEEEEEcccceeEEEec
Q 019326          139 HHSGKLALTVGRDDCLAMVNLVRGRRS-----FYHKIGKEASLIKFDGS---GEKFFMV-TEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       139 ~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~i~~~d~~~~~~~~~~~  209 (343)
                      +|++++|++++.+|.+++|++.+++..     ....+...+.+++|+|+   +++++++ .|+.|++||+++++.+..+.
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence            999999999999999999999887654     23445678999999999   8899999 89999999999998887743


Q ss_pred             --CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc------------------------ccccEEEEEEEe
Q 019326          210 --GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA------------------------HSARVKGIVVLT  263 (343)
Q Consensus       210 --~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------h~~~v~~~~~~~  263 (343)
                        |...|.+++|+++++|++++.|+.|++||+++++.+..+...                        +...|.+++++|
T Consensus       238 ~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          238 FGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             cCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence              889999999996679999999999999999999988887611                        235689999998


Q ss_pred             cCCCCCCCCCCeEEEEEc-CCCcEEEEec--cCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          264 KNDGGSTAENPYLVASAS-SDGVICVWDV--RMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ++.         +|++++ .|+.|++|++  .....  ...+........|.+++|+|++.++..+..
T Consensus       318 ~~~---------~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          318 NLP---------FVAFFVEATKCIIILEMSEKQKGD--LALKQIITFPYNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             SSS---------EEEEEETTCSEEEEEEECSSSTTC--EEEEEEEECSSCEEEEEEETTEEEEEECCT
T ss_pred             CCC---------EEEEEECCCCeEEEEEeccCCCCc--eeeccEeccCCceEEEEecCCcEEEEEecc
Confidence            877         888888 8999999999  43311  112223333477999999997655555443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4e-34  Score=248.41  Aligned_cols=302  Identities=12%  Similarity=0.058  Sum_probs=241.7

Q ss_pred             EeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeee-----E
Q 019326            5 AGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLG-----A   77 (343)
Q Consensus         5 ~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-----~   77 (343)
                      .++.++.+.+|.+...        .........+..+ ..+.+++|+  +.++++++.++.|++||+.+++...     .
T Consensus        94 ~~~~~~~~~l~~~d~~--------~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  164 (433)
T 3bws_A           94 RKPEELNEKLIALDKE--------GITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK  164 (433)
T ss_dssp             SSGGGGTTCEEECCBT--------TCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH
T ss_pred             cccCCCceEEEEECCC--------CCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc
Confidence            3455564555555431        1123445555544 345689998  5677788889999999999998876     3


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEE-EeCCCeEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALT-VGRDDCLAM  156 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~i~~  156 (343)
                      +..| ...|.+++|++++     .++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++
T Consensus       165 ~~~~-~~~v~~~~~~~~~-----~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  238 (433)
T 3bws_A          165 YKKK-LGFVETISIPEHN-----ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISV  238 (433)
T ss_dssp             HHTT-CCEEEEEEEGGGT-----EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccc-CCceeEEEEcCCC-----EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEE
Confidence            4466 7899999999988     79999999999999999999999999989999999999999988854 447999999


Q ss_pred             EEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe---------CCcEEEEEcccceeEEEecCCcceEEeeecC-CC-eE
Q 019326          157 VNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT---------EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NG-VL  225 (343)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~-~l  225 (343)
                      ||+++++..........+..++|+|+++.++++.         ++.|++||+.+++....+.+...+.+++|++ ++ ++
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  318 (433)
T 3bws_A          239 IDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIY  318 (433)
T ss_dssp             EETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEE
T ss_pred             EECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEE
Confidence            9999998877777777899999999999988883         6799999999999888887778899999985 43 55


Q ss_pred             EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC---------------CCcEEEEe
Q 019326          226 FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS---------------DGVICVWD  290 (343)
Q Consensus       226 ~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---------------dg~i~vwd  290 (343)
                      ++++.++.|++||+.+++.+..+.  +...+.+++|+|++.         +|++++.               ||.|++||
T Consensus       319 ~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          319 VSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             EEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEE
Confidence            677899999999999998888876  778899999999887         7887776               57999999


Q ss_pred             ccCccccCCCcccccccccceeEEEcCCCCceeccccC-CCCCCCccc
Q 019326          291 VRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG-DSAPKGEEK  337 (343)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~-~~~~~~~~~  337 (343)
                      +.+++..     ........+.+++++|++++++.... ++.+..++.
T Consensus       388 ~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          388 TTTDTVK-----EFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             TTTTEEE-----EEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEE-----EEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence            9886522     23333557999999999998876654 776655543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=241.84  Aligned_cols=263  Identities=18%  Similarity=0.202  Sum_probs=216.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|++||+...       .   ......+.+|..+|++++|+  +++|++++.||.|++||+.+++.+. +.
T Consensus        56 ~l~~~~~dg~i~iw~~~~~-------~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~  124 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDS-------G---QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IA  124 (368)
T ss_dssp             EEEEEETTSEEEEEEECTT-------S---CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             EEEEECCCCcEEEEEcCCC-------C---ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ec
Confidence            4899999999999999851       1   23335667899999999998  7899999999999999999988776 45


Q ss_pred             cCCCCCeEEEEE--eCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           80 HHESSSVTSLAF--YTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        80 ~~~~~~v~~l~~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      .| ...|.+++|  ++++     .+|++++.||.|++||+++++.+..+..+. .+.++.+.+  ..+++++.++.+.+|
T Consensus       125 ~~-~~~v~~~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~  195 (368)
T 3mmy_A          125 QH-DAPVKTIHWIKAPNY-----SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVY  195 (368)
T ss_dssp             EC-SSCEEEEEEEECSSC-----EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEE
T ss_pred             cc-cCceEEEEEEeCCCC-----CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEE
Confidence            57 899999999  7887     789999999999999999999998888664 566666665  488899999999999


Q ss_pred             EccCCceeEEEE---cCCcceEEEEeCCCCE----EEEE-eCCcEEEEEcccc---eeEEEec-CCc------------c
Q 019326          158 NLVRGRRSFYHK---IGKEASLIKFDGSGEK----FFMV-TEEKVGIHQAEDA---KLLCELD-GKK------------R  213 (343)
Q Consensus       158 d~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~-~~~~i~~~d~~~~---~~~~~~~-~~~------------~  213 (343)
                      +++.........   ......++.+.++...    ++++ .++.+++|+++..   .....+. |..            +
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (368)
T 3mmy_A          196 QLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA  275 (368)
T ss_dssp             ECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred             EeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence            998876543322   2355667777665554    7777 9999999999887   4455555 333            6


Q ss_pred             eEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          214 ILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       214 i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      |.+++|++ +++|++|+.||.|++||+.+++.+..+. +|..+|++++|+|++.         +|++++.|+..+.|++.
T Consensus       276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~---------~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGN---------IFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSS---------CEEEEECCCSTTCGGGC
T ss_pred             eEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCC---------eEEEEeccccccccccc
Confidence            99999995 5799999999999999999999999999 9999999999999988         99999999877666655


Q ss_pred             Cc
Q 019326          293 MA  294 (343)
Q Consensus       293 ~~  294 (343)
                      ..
T Consensus       346 ~~  347 (368)
T 3mmy_A          346 NP  347 (368)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-35  Score=247.65  Aligned_cols=251  Identities=17%  Similarity=0.185  Sum_probs=207.3

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC--CcceeeeeeeccccEEEEEEecC--CCEEEE
Q 019326           72 SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHS--GKLALT  147 (343)
Q Consensus        72 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~  147 (343)
                      |+++..+.+| ...|++++|+|++     ++|++|+.||.|++||+.  +.+.+..+.+|...|.+++|+++  +++|++
T Consensus         1 G~~~~~~~~h-~~~v~~~~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            1 GSMVVIANAH-NELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             ----CCEEEC-CCCEEEEEECSSS-----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CCccEEecCC-cccEEEEEEcCCC-----CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            3456778889 9999999999999     899999999999999997  66778889999999999999977  899999


Q ss_pred             EeCCCeEEEEEccCCc--eeEEE-EcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEcccceeE---EEecCCcceEEee
Q 019326          148 VGRDDCLAMVNLVRGR--RSFYH-KIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDAKLL---CELDGKKRILCAA  218 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~--~~~~~-~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~~~~---~~~~~~~~i~~~~  218 (343)
                      ++.||.|++||+++++  ..... .+...+.+++|+|+  +.+++++ .++.|++||+++....   ....|...+.+++
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence            9999999999999986  33333 34578999999999  8999999 8999999999987432   2234888999999


Q ss_pred             ecC--------------CCeEEEEeCCCcEEEEECCCCc----eeEEecccccccEEEEEEEec---CCCCCCCCCCeEE
Q 019326          219 PGE--------------NGVLFTGGEDRSITAWDTNSGK----VAYCIEDAHSARVKGIVVLTK---NDGGSTAENPYLV  277 (343)
Q Consensus       219 ~~~--------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~l  277 (343)
                      |++              +.++++++.||.|++||++++.    ....+. +|...|.+++|+|+   +.         +|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~---------~l  224 (379)
T 3jrp_A          155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRS---------YL  224 (379)
T ss_dssp             ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSE---------EE
T ss_pred             EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCC---------eE
Confidence            986              6799999999999999998765    445666 89999999999998   55         99


Q ss_pred             EEEcCCCcEEEEeccCccccCCCc-ccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          278 ASASSDGVICVWDVRMAIKEKPLP-LAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       278 ~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      ++++.||.|++||++++....... .....+...|.+++|+|++.+++.+..++.++.++..
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            999999999999999863221111 1222356679999999999999999999987766643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.6e-33  Score=241.75  Aligned_cols=266  Identities=13%  Similarity=0.082  Sum_probs=224.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++++.++.|++||+.+       ++.........+.+|...|.+++|+  +.++++++.|+.|++||+++++.+..+..
T Consensus       137 ~~~~~~~~~i~~~d~~~-------g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~  209 (433)
T 3bws_A          137 AIPLLEDEGMDVLDINS-------GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL  209 (433)
T ss_dssp             EEEBTTSSSEEEEETTT-------CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCC-------CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC
Confidence            56677788999999886       3333222222556899999999997  88999999999999999999999999988


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe--------CC
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG--------RD  151 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------~d  151 (343)
                      | ...+.+++|+|++     +.+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+|+++.+++++        .|
T Consensus       210 ~-~~~~~~~~~~~~~-----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          210 T-GKWSKILLYDPIR-----DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             S-SSSEEEEEEETTT-----TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             C-CCCeeEEEEcCCC-----CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCC
Confidence            8 8899999999998     566 55568999999999998888877754 4589999999999999888        58


Q ss_pred             CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEE
Q 019326          152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTG  228 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~  228 (343)
                      +.|++||+++++..........+..++|+|+++.++++  .++.+.+||+.+++....+.+...+.++++++ +++++++
T Consensus       283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  362 (433)
T 3bws_A          283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVS  362 (433)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             CeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEE
Confidence            89999999999887777777788899999999866544  89999999999999999998888999999985 5677777


Q ss_pred             eC---------------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc-CCCcEEEEecc
Q 019326          229 GE---------------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS-SDGVICVWDVR  292 (343)
Q Consensus       229 ~~---------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~  292 (343)
                      +.               ||.|++||+.+++.+..+.  +...+.+++|+|++.         +|++++ .|+.|++|+++
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~---------~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNR---------YLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSC---------EEEEEETTTTEEEEEEET
T ss_pred             ecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCC---------EEEEEECCCCeEEEEEec
Confidence            65               5799999999999988887  356889999999887         887776 49999999987


Q ss_pred             C
Q 019326          293 M  293 (343)
Q Consensus       293 ~  293 (343)
                      .
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.5e-33  Score=239.13  Aligned_cols=271  Identities=11%  Similarity=0.027  Sum_probs=195.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----------------------CceEEEee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----------------------GTAAASGG   59 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----------------------~~~l~s~~   59 (343)
                      .|++++.++.|.+|+........  ........+..+ .|..++..+.|+                      +.+|++++
T Consensus        32 ~l~a~g~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~  108 (393)
T 4gq1_A           32 NLLAIGHDTGITIYCASEEQTPG--STGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVC  108 (393)
T ss_dssp             TEEEEEESSEEEEEEEEECCSSS--CCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEE
T ss_pred             CEEEEECCCCEEEEECCCCCccc--ccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEe
Confidence            36677788999999886532211  112223333332 234445554443                      45799999


Q ss_pred             CCCeEEEEEcCCCeeee-----EeccCCCCCeEEEEEeC--------CCCCCCCceEEEeeCCCeEEEEECCCcceeeee
Q 019326           60 TDDTIHLYDLSTSSSLG-----AIHHHESSSVTSLAFYT--------PQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV  126 (343)
Q Consensus        60 ~dg~i~iwd~~~~~~~~-----~~~~~~~~~v~~l~~~~--------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  126 (343)
                      .|++|++||.++++...     .+.+| ...|++++|+|        ++     ++|++|+.|++|+|||+.++.++..+
T Consensus       109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~-----~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          109 QDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAE-----QVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEE-----EEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCC-----CEEEEEECCCeEEEEECCCCceeeee
Confidence            99999999999886543     35678 99999999998        55     79999999999999999888888888


Q ss_pred             eeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEE--------------------------EcCCcceEEEE
Q 019326          127 KVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYH--------------------------KIGKEASLIKF  179 (343)
Q Consensus       127 ~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~--------------------------~~~~~~~~~~~  179 (343)
                      ..|...|.+++|+|++ .+|++++.|++|++||+++++.....                          .+...+..+.|
T Consensus       183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW  262 (393)
T ss_dssp             EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred             cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence            8899999999999987 58999999999999999987643221                          12245667787


Q ss_pred             e-CCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceE------------------Eeeec--CC-CeEEEEeCCCcEE
Q 019326          180 D-GSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRIL------------------CAAPG--EN-GVLFTGGEDRSIT  235 (343)
Q Consensus       180 ~-~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~------------------~~~~~--~~-~~l~~~~~dg~i~  235 (343)
                      . ++++.++++ .|+.+++||+..++....+. +...+.                  ...+.  .+ .++++|+.||.|+
T Consensus       263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~  342 (393)
T 4gq1_A          263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQ  342 (393)
T ss_dssp             ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEE
T ss_pred             ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEE
Confidence            6 799999999 89999999998876555443 211111                  12222  23 3667788999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +||+.+++....+. .|..+|.+++|+|++.         +||+++.|| +.+|.+.
T Consensus       343 lwd~~~~~~~~~~~-~~~~~V~svafspdG~---------~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          343 LINTYEKDSNSIPI-QLGMPIVDFCWHQDGS---------HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEETTCTTCCEEEE-ECSSCEEEEEECTTSS---------EEEEEESSE-EEEEEEG
T ss_pred             EEECCCCcEEEEec-CCCCcEEEEEEcCCCC---------EEEEEeCCC-eEEEEEe
Confidence            99999999888887 8999999999999988         999998766 6666664

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=239.47  Aligned_cols=257  Identities=11%  Similarity=0.031  Sum_probs=200.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcC---------CC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLS---------TS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~---------~~   72 (343)
                      .|++|+.||.|++||+..       ++.     +..+.  ...|.++.|+.. +++++.|++|++|+..         ++
T Consensus        50 ~l~sg~~Dg~v~iwd~~~-------~~~-----~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQLKD-------SKT-----ITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEETTEEEEEEESS-------SSC-----EEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             EEEEECCCCcEEEEECCC-------CcE-----EEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc
Confidence            489999999999999987       222     22222  456777778755 9999999999999765         44


Q ss_pred             eeeeEec-cCCCCCeEEEEEeC--CCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee-ccccEEEEEEecCCCEEEEE
Q 019326           73 SSLGAIH-HHESSSVTSLAFYT--PQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGKLALTV  148 (343)
Q Consensus        73 ~~~~~~~-~~~~~~v~~l~~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~  148 (343)
                      +.+..+. .| ...|.+++|+|  ++     +++++++.||+|++||+++++.+..... |...|.+++|+|++.+|++|
T Consensus       115 ~~~~~~~~~~-~~~v~~~~~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          115 KVLREIEVDS-ANEIIYMYGHNEVNT-----EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             CEEEEEECCC-SSCEEEEECCC---C-----CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             ceeEEeecCC-CCCEEEEEcCCCCCC-----CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            5455554 44 68899999999  88     7999999999999999999888766643 45589999999999999999


Q ss_pred             eCCCeEEEEEccCCcee-EEEE--cCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec----CCcce--EEeee
Q 019326          149 GRDDCLAMVNLVRGRRS-FYHK--IGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD----GKKRI--LCAAP  219 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~i--~~~~~  219 (343)
                      +.||.|++||+++++.. ....  +...+.+++|+|++.+++++.++.|++||+++.+....+.    +..++  .+++|
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence            99999999999999876 4443  4688999999999999999977799999999987665443    22233  36888


Q ss_pred             c-CCCeEEEEeC-CCcEEEEECCCCceeEEecccccccEEEEEEEe---cCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          220 G-ENGVLFTGGE-DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT---KNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       220 ~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      + ++.+|++++. |+.|++|++.+.......     .++..+.|.+   +..         .+++++.||.+.++-...
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---------~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFT---------DMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCC---------EEEEEEETTEEEEEEECS
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccc---------eeEEEecCCceEEEEecC
Confidence            8 4678999888 999999999766544333     4667777777   443         899999999999886543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=239.50  Aligned_cols=237  Identities=11%  Similarity=0.067  Sum_probs=199.4

Q ss_pred             cCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcC--CCeeeeEec--cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           39 PAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLS--TSSSLGAIH--HHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ++|.+.|++++|+  +++| ++|+.||.|++||+.  +++.+..+.  .+ ...|.+++|+|++     ++|++|+.+|.
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~-----~~l~~~~~~g~  172 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF-SKRPNAISIAEDD-----TTVIIADKFGD  172 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC-SSCEEEEEECTTS-----SEEEEEETTSE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC-CCCceEEEEcCCC-----CEEEEEeCCCc
Confidence            3566789999999  7775 899999999999999  888888876  45 6889999999998     89999999999


Q ss_pred             EEEEECCCcceee----eeeeccccEEEEEEecC---CCEEEEEeCCCeEEEEEccCCceeEEE--EcCCcceEEEEeCC
Q 019326          112 VSIFDADPFVLLT----SVKVHKKGVNDLAVHHS---GKLALTVGRDDCLAMVNLVRGRRSFYH--KIGKEASLIKFDGS  182 (343)
Q Consensus       112 i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~  182 (343)
                      |++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++.+...  .+...+.+++|+ +
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-K  251 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-C
Confidence            9999998776554    78889999999999999   999999999999999999998876553  356789999999 9


Q ss_pred             CCEEEEE-eCCcEEEEEcccceeEEEecC--------------------------CcceEEeeecC-CCeEEEEe-CCCc
Q 019326          183 GEKFFMV-TEEKVGIHQAEDAKLLCELDG--------------------------KKRILCAAPGE-NGVLFTGG-EDRS  233 (343)
Q Consensus       183 ~~~~~~~-~~~~i~~~d~~~~~~~~~~~~--------------------------~~~i~~~~~~~-~~~l~~~~-~dg~  233 (343)
                      +.+++++ .|+.|++||+++++.+..+..                          ...+.++.+++ ++++++++ .++.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            9999999 899999999999998887752                          24578888884 57888888 8999


Q ss_pred             EEEEEC--CCC---ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC-------CCcEEEEeccCc
Q 019326          234 ITAWDT--NSG---KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS-------DGVICVWDVRMA  294 (343)
Q Consensus       234 i~i~d~--~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~  294 (343)
                      |++|++  .++   +.+..+. .| ..|.+++|+|++          ++++.+.       +..|.+|.++..
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~----------~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDE----------FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTE----------EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEEEEeccCCCCceeeccEec-cC-CceEEEEecCCc----------EEEEEecccCCCCCCcceEEEEEEcC
Confidence            999999  555   6677777 66 889999999954          5555433       556899987643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-34  Score=244.30  Aligned_cols=281  Identities=8%  Similarity=-0.053  Sum_probs=212.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEec-c
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIH-H   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~   80 (343)
                      .+|+++.|++|+  |...       .        ..+.+|...|.+++|++.-     .++   .|++.+++....+. .
T Consensus        29 ~iASas~D~TV~--d~~~-------~--------~~l~gh~~~v~~V~FsPdg-----~~~---~~~~~~~~~~~~~~~~   83 (588)
T 2j04_A           29 LYLTTFPDISIG--QPKY-------A--------KDINCNSKNLFHVKEFPLE-----FEN---KLDFELAQQNGLLNSQ   83 (588)
T ss_dssp             EEEECSSSEEEE--EECC-------C--------SCCSSBGGGTEEEEEECCC-----CCC---TTTTSCCCSSCSSTTS
T ss_pred             EEEEEcCCceee--cccc-------c--------ceecCCCccEEEEEECCCC-----Ccc---eEEEEeCCCceEeecC
Confidence            578999999999  6433       1        2236899999999998321     344   44444444333333 4


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-----cEEEEEEecCCCEEEEEeCCCeEE
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-----GVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      | ...|.+++|+|++     ++|++++.||.|++||.++  ++..+. |..     .|.+++|+|+|++|++|+.||+|+
T Consensus        84 ~-~~~V~~vawSPdG-----~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           84 P-VCYPRVCKPSPID-----DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             C-SCCEEEEEECSSS-----SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             C-CCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            5 7899999999999     8999999999999999654  666666 665     599999999999999999999999


Q ss_pred             EEEccCCce-------eEEEE-----cCCcceEEEEeCCCCEEEEEeCCcEEEEEccccee---EEEe--cCCcceEEee
Q 019326          156 MVNLVRGRR-------SFYHK-----IGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKL---LCEL--DGKKRILCAA  218 (343)
Q Consensus       156 ~wd~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~--~~~~~i~~~~  218 (343)
                      +||+.++..       +....     +...|.+++|+|++ .++++.|+.+++||+..++.   ..++  .|...|.+++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            999998752       23322     23589999999999 44444999999999988774   3455  3668899999


Q ss_pred             ecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEE--EecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc-
Q 019326          219 PGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVV--LTKNDGGSTAENPYLVASASSDGVICVWDVRMAI-  295 (343)
Q Consensus       219 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-  295 (343)
                      |+ ++.+++++ ++.|++||+.+++...... +|...|.++++  +|++.         .|+++++||+ ++|..+.-. 
T Consensus       234 Fs-g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d~~~~  300 (588)
T 2j04_A          234 IV-DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLEDELHV  300 (588)
T ss_dssp             EE-TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESSSEEE
T ss_pred             EE-CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeeccEEE
Confidence            98 78888887 6999999999877644444 79999999999  87776         9999999999 999974210 


Q ss_pred             -----------------ccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          296 -----------------KEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       296 -----------------~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                                       .....++..+.....|.++++||||.+++.+..-+
T Consensus       301 spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i~  352 (588)
T 2j04_A          301 TADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDME  352 (588)
T ss_dssp             ECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEEE
T ss_pred             CCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEecc
Confidence                             00001122333344699999999999888766554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-32  Score=229.39  Aligned_cols=234  Identities=19%  Similarity=0.206  Sum_probs=197.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCCCeEEEEEcCCC-----
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTDDTIHLYDLSTS-----   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~-----   72 (343)
                      .|++|+.||.|++||+...        .........+.+|..+|++++|+    +++|++|+.||.|++||+.++     
T Consensus        25 ~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~   96 (351)
T 3f3f_A           25 HVATCSSDQHIKVFKLDKD--------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS   96 (351)
T ss_dssp             EEEEEETTSEEEEEEECSS--------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred             EEEEeeCCCeEEEEECCCC--------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence            4899999999999999862        12245667778999999999997    679999999999999999987     


Q ss_pred             ----eeeeEeccCCCCCeEEEEEeCC--CCCCCCceEEEeeCCCeEEEEECCCcceeeeee-------------eccccE
Q 019326           73 ----SSLGAIHHHESSSVTSLAFYTP--QNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-------------VHKKGV  133 (343)
Q Consensus        73 ----~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v  133 (343)
                          +.+..+..| ...|.+++|+|+  +     .+|++++.||.|++||+++++.+..+.             .|...+
T Consensus        97 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (351)
T 3f3f_A           97 GRRWNKLCTLNDS-KGSLYSVKFAPAHLG-----LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD  170 (351)
T ss_dssp             SCSEEEEEEECCC-SSCEEEEEECCGGGC-----SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred             ccCcceeeeeccc-CCceeEEEEcCCCCC-----cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence                567788888 899999999998  7     799999999999999998877665544             477899


Q ss_pred             EEEEEecC---CCEEEEEeCCCeEEEEEccCCceeEEEE---cCCcceEEEEeCCC----CEEEEE-eCCcEEEEEcccc
Q 019326          134 NDLAVHHS---GKLALTVGRDDCLAMVNLVRGRRSFYHK---IGKEASLIKFDGSG----EKFFMV-TEEKVGIHQAEDA  202 (343)
Q Consensus       134 ~~i~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~-~~~~i~~~d~~~~  202 (343)
                      .+++|+|+   +.++++++.++.+.+|+...++......   +...+.+++|+|++    ++++++ .|+.|++||++.+
T Consensus       171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            99999997   8999999999999888887776533333   45689999999998    788888 8999999999875


Q ss_pred             ----------------------------------------------eeEEEec-CCcceEEeeec-CCCeEEEEeCCCcE
Q 019326          203 ----------------------------------------------KLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSI  234 (343)
Q Consensus       203 ----------------------------------------------~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i  234 (343)
                                                                    +.+..+. |...|++++|+ ++++|++|+.||.|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          251 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             C---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             cCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcE
Confidence                                                          4455555 78899999998 46799999999999


Q ss_pred             EEEECCCCceeEEec
Q 019326          235 TAWDTNSGKVAYCIE  249 (343)
Q Consensus       235 ~i~d~~~~~~~~~~~  249 (343)
                      ++||+.+++.+..+.
T Consensus       331 ~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          331 RLWKATYSNEFKCMS  345 (351)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             EEEecCcCcchhhee
Confidence            999999887665544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-31  Score=229.93  Aligned_cols=261  Identities=13%  Similarity=0.087  Sum_probs=218.6

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeeccc
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHKK  131 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~  131 (343)
                      ..+++++.|+.|++||+.+++.+..+..+  ..+.+++|+|++     +++ ++++.|+.|++||+.+++.+..+..+. 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg-----~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNNVIATVPAGS-   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCCC-----CEEEEECCCCCeEEEEECCCCeEEEEEECCC-
Confidence            36788999999999999999999998877  569999999999     555 677799999999999999988887555 


Q ss_pred             cEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEE-EEE-eCCcEEEEEcccceeEEEe
Q 019326          132 GVNDLAVHHSGKLALTV-GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKF-FMV-TEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~d~~~~~~~~~~  208 (343)
                      .+.+++|+|++++|+++ +.++.|++||+.+++..........+..++|+|+++.+ +++ .++.|++||+.+++....+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            89999999999987554 46799999999999988888888889999999999988 455 7999999999999999988


Q ss_pred             cCCcceEEeeecC-CCeE-EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc---CC
Q 019326          209 DGKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS---SD  283 (343)
Q Consensus       209 ~~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---~d  283 (343)
                      .....+.++++++ ++.+ ++++.++.|++||+++++....+.  +...+.+++|+|++.         +|++++   .|
T Consensus       155 ~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~---------~l~~~~~~~~~  223 (391)
T 1l0q_A          155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGT---------KAYVTNVDKYF  223 (391)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSS---------EEEEEEECSSC
T ss_pred             ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCC---------EEEEEecCcCC
Confidence            8777889999984 4555 677889999999999998888776  667899999999887         888877   68


Q ss_pred             CcEEEEeccCccccCCCcccccccccceeEEEcCCCCcee-ccccCCCCCCCccc
Q 019326          284 GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK-RPQIGDSAPKGEEK  337 (343)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~-~~~~~~~~~~~~~~  337 (343)
                      +.|++||++++..     +........+.+++++|+++++ +.+..++.++.++.
T Consensus       224 ~~v~~~d~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          224 NTVSMIDTGTNKI-----TARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             CEEEEEETTTTEE-----EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CcEEEEECCCCeE-----EEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            9999999998642     2233334568899999999877 55566776665544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.8e-32  Score=220.56  Aligned_cols=261  Identities=12%  Similarity=0.059  Sum_probs=190.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecC---ceEEEeeCCCeE-EEEEcC--CC---
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSG---TAAASGGTDDTI-HLYDLS--TS---   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i-~iwd~~--~~---   72 (343)
                      .+++++. ..|++|+...       .  .+.+.++++.+|..+|..+.+.+   +++.++-..=.+ .++.+.  ..   
T Consensus        56 ~~~~~~~-~~v~lw~~~~-------~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~  125 (356)
T 2w18_A           56 CIITACE-DVVSLWKALD-------A--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDES  125 (356)
T ss_dssp             EEEEEES-SEEEEEEESS-------S--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------
T ss_pred             EEEEecc-ceEEEcccCC-------C--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccc
Confidence            3455555 7999999986       2  44678899999999999999982   333332211111 111111  01   


Q ss_pred             -eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee--CCCeEEEEEC-CCcceeeeeeeccccEEEEEEec---CCCEE
Q 019326           73 -SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS--ADGFVSIFDA-DPFVLLTSVKVHKKGVNDLAVHH---SGKLA  145 (343)
Q Consensus        73 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~~---~~~~l  145 (343)
                       .....-.+| ...|..+   +++     +++.+++  .|+.|++|++ .+++.+..+.+|...+..++|++   ++..|
T Consensus       126 ~~~~l~s~g~-~~~v~~l---~~g-----~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L  196 (356)
T 2w18_A          126 EKQVLLKSGN-IKAVLGL---TKR-----RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL  196 (356)
T ss_dssp             CCEEEEEEEE-EEEEEEE---TTT-----EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred             cccEEEeCCC-eEEEEec---CCC-----cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence             111111233 3344443   455     4555533  5999999999 55888899999999999999999   77999


Q ss_pred             EEEeCCCeEEEEEccCCceeEEEEcC----CcceEEEEeCCCCEEEE------------E-eCCcEEEEEcccceeEEEe
Q 019326          146 LTVGRDDCLAMVNLVRGRRSFYHKIG----KEASLIKFDGSGEKFFM------------V-TEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       146 ~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------------~-~~~~i~~~d~~~~~~~~~~  208 (343)
                      ++++.|++|++||+++++.+..+...    ..+.+++|+|++..+++            + .|+++++||..+++.+..+
T Consensus       197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred             EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence            99999999999999999988877632    35677899999998743            4 6889999999999887765


Q ss_pred             c------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEE-EEEEEecCCCCCCCCCCeEEEEEc
Q 019326          209 D------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVK-GIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       209 ~------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      .      |...+.+..+ .+.++++|+.|++|+|||+.+++.+.++. +|...+. .++|+|++.         +|++|+
T Consensus       277 ~~~~p~Gh~~~~lsg~~-sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~---------~LaSGS  345 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDV-KDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDS---------HLLAGQ  345 (356)
T ss_dssp             EECCCTTCCCCEEEEEE-ETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSS---------EEEEEC
T ss_pred             EeeccCCCcceeEcccc-CCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCC---------EEEEEE
Confidence            2      3334444444 36789999999999999999999999998 8877655 689999988         999999


Q ss_pred             CCCcEEEEecc
Q 019326          282 SDGVICVWDVR  292 (343)
Q Consensus       282 ~dg~i~vwd~~  292 (343)
                      .|++|+|||+.
T Consensus       346 ~D~TIklWd~~  356 (356)
T 2w18_A          346 KDGNIFVYHYS  356 (356)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEecCC
Confidence            99999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=253.25  Aligned_cols=247  Identities=17%  Similarity=0.173  Sum_probs=205.0

Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC--CcceeeeeeeccccEEEEEEecC--CCEEEEEeCC
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVNDLAVHHS--GKLALTVGRD  151 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d  151 (343)
                      ..+.+| .+.|++++|+|++     ++|++|+.||.|++||+.  +++.+..+.+|.+.|.+++|+|+  +++|++++.|
T Consensus         3 ~~l~gH-~~~V~~l~~s~dg-----~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            3 VIANAH-NELIHDAVLDYYG-----KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             -----C-CCCEEEECCCSSS-----CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             eecccC-cceeEEEEECCCC-----CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            456788 9999999999998     799999999999999997  66788889999999999999988  8999999999


Q ss_pred             CeEEEEEccCCce--eE-EEEcCCcceEEEEeCC--CCEEEEE-eCCcEEEEEccccee---EEEecCCcceEEeeecC-
Q 019326          152 DCLAMVNLVRGRR--SF-YHKIGKEASLIKFDGS--GEKFFMV-TEEKVGIHQAEDAKL---LCELDGKKRILCAAPGE-  221 (343)
Q Consensus       152 ~~i~~wd~~~~~~--~~-~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~~-  221 (343)
                      |.|++||+.+++.  .. ...+...+.+++|+|+  +..++++ .++.|++||++++..   .....|...+.++.|++ 
T Consensus        77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            9999999999862  22 2335678999999999  9999999 899999999988732   22334888999999986 


Q ss_pred             -------------CCeEEEEeCCCcEEEEECCCC----ceeEEecccccccEEEEEEEec---CCCCCCCCCCeEEEEEc
Q 019326          222 -------------NGVLFTGGEDRSITAWDTNSG----KVAYCIEDAHSARVKGIVVLTK---NDGGSTAENPYLVASAS  281 (343)
Q Consensus       222 -------------~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~l~s~~  281 (343)
                                   +.++++|+.||.|++||++++    .....+. +|..+|++++|+|+   +.         +|++++
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~---------~l~s~s  226 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRS---------YLASVS  226 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSE---------EEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCC---------EEEEEe
Confidence                         579999999999999999877    4556677 89999999999998   55         999999


Q ss_pred             CCCcEEEEeccCccccCCCc-ccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          282 SDGVICVWDVRMAIKEKPLP-LAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      .||.|++||++++....... .....+...|.+++|+|++.+++.+..++.++.++..
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            99999999999863221112 2223456679999999999999999999988777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-33  Score=232.85  Aligned_cols=250  Identities=8%  Similarity=0.041  Sum_probs=190.7

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC---------Ccce
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD---------PFVL  122 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~  122 (343)
                      +..|++|+.||.|++||+.+++.+..+.   ...|.++.|+|       . +++++.|++|++|+..         +++.
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~-------~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHP-------A-IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCC-------S-EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCC-------c-eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            7889999999999999999998888776   24566777765       2 8999999999999765         4444


Q ss_pred             eeeee-eccccEEEEEEec--CCCEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-eCCcEEE
Q 019326          123 LTSVK-VHKKGVNDLAVHH--SGKLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TEEKVGI  196 (343)
Q Consensus       123 ~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~  196 (343)
                      +..+. .|...|.+++|+|  +++++++++.||+|++||+++++......  ....+.+++|+|++.+++++ .|+.|++
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            44444 5668899999999  99999999999999999999998865543  33569999999999999998 9999999


Q ss_pred             EEcccceeE-EEec--CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecc--cccccEE--EEEEEecCCCC
Q 019326          197 HQAEDAKLL-CELD--GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVK--GIVVLTKNDGG  268 (343)
Q Consensus       197 ~d~~~~~~~-~~~~--~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~--~~~~~~~~~~~  268 (343)
                      ||+++++.. ..+.  |..+|.+++|++ +.+|++++ ++.|++||+++++.+..+..  .|...+.  +++|+|++.  
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--  273 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK--  273 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS--
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC--
Confidence            999998877 5555  689999999995 56888888 55999999999877655441  2444444  699999887  


Q ss_pred             CCCCCCeEEEEEcC-CCcEEEEeccCccccCCCcccccccccceeEEEcCC---CCceeccccCCC
Q 019326          269 STAENPYLVASASS-DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS---TKSFKRPQIGDS  330 (343)
Q Consensus       269 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~~~~~~~~~  330 (343)
                             +|++++. |+.|++|++....+..     ..   .++.++++++   +...++....++
T Consensus       274 -------~l~~~s~~d~~i~v~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          274 -------NMIAYSNESNSLTIYKFDKKTKNW-----TK---DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             -------EEEEEETTTTEEEEEEECTTTCSE-----EE---EEEEECCC----CCCCEEEEEEETT
T ss_pred             -------EEEEecCCCCcEEEEEEcccccce-----Ee---cCceeEecCccccccceeEEEecCC
Confidence                   9999988 9999999997653111     11   3355555555   554554444444

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=236.50  Aligned_cols=253  Identities=7%  Similarity=-0.024  Sum_probs=202.1

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      .-...|.+++|+  |+++|+++.|++|+  |...++   .+.+| ...|.+++|+|++            .++.+.+|+.
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh-~~~v~~V~FsPdg------------~~~~~~~~~~   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCN-SKNLFHVKEFPLE------------FENKLDFELA   74 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSB-GGGTEEEEEECCC------------CCCTTTTSCC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCC-CccEEEEEECCCC------------CcceEEEEeC
Confidence            345789999999  99999999999999  755554   44688 9999999999975            3555555554


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC-----cceEEEEeCCCCEEEEE-eC
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK-----EASLIKFDGSGEKFFMV-TE  191 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~  191 (343)
                      +.. .+..+ .|...|.+++|+|+|..|++++.||.|++||...  .+....+..     .+.+++|+|+|++++++ .|
T Consensus        75 ~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           75 QQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             CSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred             CCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC
Confidence            332 22233 3578999999999999999999999999999544  333334222     48999999999999999 89


Q ss_pred             CcEEEEEccccee-------EEEec-----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCce---eEEecccccccE
Q 019326          192 EKVGIHQAEDAKL-------LCELD-----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKV---AYCIEDAHSARV  256 (343)
Q Consensus       192 ~~i~~~d~~~~~~-------~~~~~-----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~h~~~v  256 (343)
                      |.|++||+.++..       +..+.     |...|.+++|++++ +++++.|+.|++||+..++.   ..++..+|...|
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence            9999999998753       55653     56799999999877 99999999999999988773   356633788999


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEc--CCCCceeccccCCCC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAG--SSTKSFKRPQIGDSA  331 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~~~~~~~~~~  331 (343)
                      .+++|+  +.         .||+++ |++|++||+.++...    .....+...|..+++  +|++..++.+.+++.
T Consensus       230 ~svaFs--g~---------~LASa~-~~tIkLWd~~~~~~~----~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          230 TDLKIV--DY---------KVVLTC-PGYVHKIDLKNYSIS----SLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CCEEEE--TT---------EEEEEC-SSEEEEEETTTTEEE----EEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEEEEE--CC---------EEEEEe-CCeEEEEECCCCeEE----EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            999999  44         899997 699999999986421    223256678999999  999999999998887

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.9e-30  Score=215.06  Aligned_cols=254  Identities=11%  Similarity=0.128  Sum_probs=191.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      |++|+.+ .+++|++.+            .........+  .+..+++.  ++.+ ++++.|+.|++||..+++.+..+.
T Consensus        34 la~g~~~-~~~iw~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           34 LILSTLK-SFEIYNVHP------------VAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             EEEECSS-EEEEEEETT------------EEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCC-EEEEEecCC------------cceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE
Confidence            5666655 578999876            2223322222  35555555  5555 678888999999999999999887


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ceeeeeeeccccEEEEEEecCCCEEEE--EeCCCeEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VLLTSVKVHKKGVNDLAVHHSGKLALT--VGRDDCLAM  156 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~--~~~d~~i~~  156 (343)
                      .  ...|.+++++++.       ++++ .|+.|++||+.++ +.+..+..   +...+++++  .+++.  ++.||.|++
T Consensus        99 ~--~~~v~~v~~~~~~-------~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           99 V--DAPVKDLFLSREF-------IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             C--SSCEEEEEECSSE-------EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred             C--CCceEEEEEcCCE-------EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence            4  4799999998764       3433 4789999999987 77777765   444566676  46665  588999999


Q ss_pred             EEccCCc-----------------eeEEEEcCCcceEEEEeCCCCEEEEE-eCCc-EEEEEcccceeEEEec---CCcce
Q 019326          157 VNLVRGR-----------------RSFYHKIGKEASLIKFDGSGEKFFMV-TEEK-VGIHQAEDAKLLCELD---GKKRI  214 (343)
Q Consensus       157 wd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~d~~~~~~~~~~~---~~~~i  214 (343)
                      ||+++++                 ......+...+.+++|+|++++++++ .|+. |++||+++++.+..+.   |...|
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            9999865                 23344566889999999999999999 8998 9999999999999987   88999


Q ss_pred             EEeeecC-CCeEEEEeCCCcEEEEECCCCce--eEEe--------------------cccccccEEEEEEEecCCCCCCC
Q 019326          215 LCAAPGE-NGVLFTGGEDRSITAWDTNSGKV--AYCI--------------------EDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       215 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~~~--------------------~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                      .+++|++ +++|++++.|+.|++||++.+..  ...+                    ...+......++|++++.     
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-----  318 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-----  318 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-----
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-----
Confidence            9999995 67999999999999999976531  1111                    111122335677777766     


Q ss_pred             CCCeEEEEEcCCCcEEEEeccCcc
Q 019326          272 ENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                          +|++++.||.+++|++..+.
T Consensus       319 ----~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          319 ----LVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             ----EEEEETTTTEEEEEEEEEET
T ss_pred             ----EEEEEeCCCeEEEEEEEcCC
Confidence                99999999999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-31  Score=230.04  Aligned_cols=247  Identities=14%  Similarity=0.184  Sum_probs=200.3

Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC----------cceeeeeeeccccEEEEEEecCCC-EE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP----------FVLLTSVKVHKKGVNDLAVHHSGK-LA  145 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l  145 (343)
                      ....| ...|++++|+|++    +.+|++++.||.|++||+.+          .+.+..+.+|...|.+++|+|++. +|
T Consensus       123 ~~~~h-~~~v~~l~~~p~~----~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          123 IKINH-EGEVNRARYMPQN----ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             EEEEE-SSCCSEEEEETTE----EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred             EEEcC-CCcEEEEEECCCC----CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence            34567 8999999999973    17999999999999999976          577888899999999999999988 99


Q ss_pred             EEEeCCCeEEEEEccCCce--------eEEEEcCCcceEEEEeC-CCCEEEEE-eCCcEEEEEcccc---eeEEEe-cCC
Q 019326          146 LTVGRDDCLAMVNLVRGRR--------SFYHKIGKEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDA---KLLCEL-DGK  211 (343)
Q Consensus       146 ~~~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~---~~~~~~-~~~  211 (343)
                      ++++.||.|++||+.++..        .....+...+.+++|+| ++..++++ .++.|++||+++.   +....+ .|.
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            9999999999999987432        11224557799999999 67788788 8999999999987   455555 488


Q ss_pred             cceEEeeecC-CC-eEEEEeCCCcEEEEECCC-CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          212 KRILCAAPGE-NG-VLFTGGEDRSITAWDTNS-GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       212 ~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      ..+++++|++ +. ++++|+.||.|++||+++ ..++..+. .|...|.+++|+|++..        +|++++.||.|++
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~--------~l~s~~~d~~i~i  348 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNET--------ILASSGTDRRLHV  348 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTT--------EEEEEETTSCCEE
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCC--------EEEEEeCCCcEEE
Confidence            9999999995 33 688999999999999998 56788888 89999999999998742        7999999999999


Q ss_pred             EeccCccccC---------CCccccc-ccccceeEEEcCCCCc-eeccccCCCCCCCccc
Q 019326          289 WDVRMAIKEK---------PLPLAEA-KTNSRLTCLAGSSTKS-FKRPQIGDSAPKGEEK  337 (343)
Q Consensus       289 wd~~~~~~~~---------~~~~~~~-~~~~~i~~~~~s~~~~-~~~~~~~~~~~~~~~~  337 (343)
                      ||+.......         +..+... .+...|.+++|+|++. +++.+..++.++.++.
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            9998742211         1222222 3455799999999999 8888888886554443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=5.1e-30  Score=227.29  Aligned_cols=295  Identities=15%  Similarity=0.069  Sum_probs=232.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEc--CCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDL--STSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~--~~~~~~~~   77 (343)
                      .+++++.|+.|.+||..+            .+.+.++..+.. +.+++|+  +++|++++.|+.|++||+  .+++.+..
T Consensus       151 ~~vs~~~d~~V~v~D~~t------------~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~  217 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDS------------KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  217 (543)
T ss_dssp             EEEEEGGGTEEEEEETTT------------CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEcCCCeEEEEECCC------------ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence            367888899999999877            234455553323 8899998  899999999999999999  88998888


Q ss_pred             eccCCCCCeEEEEEeC----CCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeec----------cc-cEEEEEEecC
Q 019326           78 IHHHESSSVTSLAFYT----PQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVH----------KK-GVNDLAVHHS  141 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~----~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~i~~~~~  141 (343)
                      +..+  ..+..++|+|    ++     +++++++. +++|.+||..+++++..+..+          .. .+..+.++|+
T Consensus       218 i~~g--~~p~~va~sp~~~~dg-----~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~  290 (543)
T 1nir_A          218 IKIG--IEARSVESSKFKGYED-----RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE  290 (543)
T ss_dssp             EECC--SEEEEEEECCSTTCTT-----TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred             EecC--CCcceEEeCCCcCCCC-----CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence            8754  6789999999    88     78888875 899999999999998888652          23 7899999997


Q ss_pred             CC-EEEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec-----CC
Q 019326          142 GK-LALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD-----GK  211 (343)
Q Consensus       142 ~~-~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-----~~  211 (343)
                      +. ++++...++.|.+||+.+.+.+.  .......+..+.|+|++++++++  .++.|.+||..+++++..+.     |.
T Consensus       291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~  370 (543)
T 1nir_A          291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  370 (543)
T ss_dssp             SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred             CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence            65 55667778999999998876544  44455678889999999988766  68899999999999988876     33


Q ss_pred             cceEEeeecC-CCeEEEEe-CCCcEEEEECCC-------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc-
Q 019326          212 KRILCAAPGE-NGVLFTGG-EDRSITAWDTNS-------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS-  281 (343)
Q Consensus       212 ~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-  281 (343)
                      .....+...+ +.+++++. .|++|.+||+.+       ++.++++. .|...+..++++|+++         +|++++ 
T Consensus       371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~---------~l~v~~~  440 (543)
T 1nir_A          371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSS---------HLYVDTT  440 (543)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCC---------EEEECCT
T ss_pred             CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCC---------cEEEecC
Confidence            3333443323 44566665 589999999998       88999999 8988889999999987         899887 


Q ss_pred             ------CCCcEEEEeccCcccc-CCCcccc----cccccceeEEEcCCCCceeccc
Q 019326          282 ------SDGVICVWDVRMAIKE-KPLPLAE----AKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       282 ------~dg~i~vwd~~~~~~~-~~~~~~~----~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                            .+++|.|||+.+.+.. ..+++..    .....++..++|+++++++...
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence                  2789999999988643 2222221    1235679999999999988754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.4e-30  Score=223.06  Aligned_cols=225  Identities=13%  Similarity=-0.014  Sum_probs=168.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----------CceEEEeeCCCeEEEEEcCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----------GTAAASGGTDDTIHLYDLST   71 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----------~~~l~s~~~dg~i~iwd~~~   71 (343)
                      .|++|+.|++|++||+..       +.......+..+.+|.+.|++++|+          +++||+|+.|++|+|||+.+
T Consensus       103 ~las~~~d~~v~lw~~~~-------~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKN-------ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             EEEEEETTSCEEEEEEET-------TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             EEEEEeCCCcEEEEECCC-------CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            488999999999999987       4444455667788999999999995          57999999999999999999


Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-------------------------
Q 019326           72 SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-------------------------  126 (343)
Q Consensus        72 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------  126 (343)
                      +.++..+..| ...|.+++|+|++    +.+|++|+.|++|++||+.+++.....                         
T Consensus       176 ~~~~~~~~~~-~~~v~~v~~~p~~----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          176 EGPILAGYPL-SSPGISVQFRPSN----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             TEEEEEEEEC-SSCEEEEEEETTE----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             CceeeeecCC-CCCcEEEEECCCC----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            8888888888 7999999999987    258999999999999999876543221                         


Q ss_pred             eeccccEEEEEEe-cCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------------------CCcceEEEEeC-CCCE
Q 019326          127 KVHKKGVNDLAVH-HSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------------------GKEASLIKFDG-SGEK  185 (343)
Q Consensus       127 ~~~~~~v~~i~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------------------~~~~~~~~~~~-~~~~  185 (343)
                      .+|...+.++.|. |+++.+++++.|+++++||+..++.......                   ........+.| .+..
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY  330 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence            3466788889987 7899999999999999999987654332211                   01111223333 3444


Q ss_pred             -EEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEEC
Q 019326          186 -FFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       186 -~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~  239 (343)
                       ++++ .|+.|++||..+++....+. |..+|.+++|+ ++++|++++.+| +.+|.+
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence             4555 79999999999987766544 88899999999 567888888766 556654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.2e-29  Score=216.81  Aligned_cols=285  Identities=12%  Similarity=0.036  Sum_probs=216.2

Q ss_pred             eEEec----cCC----eEEEEEe--ecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----------------CceEE
Q 019326            3 LIAGS----YEK----FIWGYKL--KPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----------------GTAAA   56 (343)
Q Consensus         3 l~~g~----~d~----~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----------------~~~l~   56 (343)
                      +++|+    .+|    .|++||+  .+       ++   ......+.+|...+..+++.                +..++
T Consensus        78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~  147 (415)
T 2hqs_A           78 VVVGQVTPNPDGSYNVAYQLVDTGGAP-------GT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA  147 (415)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEECSSST-------TC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred             EEEEEEEECCCCeEEEEEEEEeCCCCC-------CC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence            34665    457    8999999  66       22   12224567888888777664                55676


Q ss_pred             EeeCC------CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---eEEEEECCCcceeeeee
Q 019326           57 SGGTD------DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---FVSIFDADPFVLLTSVK  127 (343)
Q Consensus        57 s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~  127 (343)
                      .++.+      +.|++||++ +.....+..| ...+.+++|+|++     +.|++++.++   .|++||+.+++.. .+.
T Consensus       148 ~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~-~~~v~~~~~Spdg-----~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          148 YVVQTNGGQFPYELRVSDYD-GYNQFVVHRS-PQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             EEEECSSSSCCEEEEEEETT-SCSCEEEEEE-SSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             EEEecCCCCccceEEEEcCC-CCCCEEEeCC-CCcceeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            66654      799999997 4556777778 8899999999999     7899998875   9999999988765 566


Q ss_pred             eccccEEEEEEecCCCEEE-EEeCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-e-CC--cEEEEEcc
Q 019326          128 VHKKGVNDLAVHHSGKLAL-TVGRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T-EE--KVGIHQAE  200 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~i~~~d~~  200 (343)
                      .|...+.+++|+|+|+.|+ +++.++  .|++||+.+++......+...+..++|+|+++.++.+ . ++  .|.+||+.
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            6888999999999999887 666555  4999999988875555556778899999999988887 3 34  67888988


Q ss_pred             cceeEEEecCCcceEEeeecC-CCeEEEEeCC---CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          201 DAKLLCELDGKKRILCAAPGE-NGVLFTGGED---RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       201 ~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                      +++......+...+.+++|++ +++|++++.+   ..|++||+.+++. ..+. .|. .+.+++|+|++.         +
T Consensus       300 ~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~-~~~~~~~spdg~---------~  367 (415)
T 2hqs_A          300 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-STF-LDETPSLAPNGT---------M  367 (415)
T ss_dssp             SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CSS-SCEEEEECTTSS---------E
T ss_pred             CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEec-CCC-CcCCeEEcCCCC---------E
Confidence            877544334667788999984 5677777654   5899999998876 4555 454 899999999887         8


Q ss_pred             EEEEcCCC---cEEEEeccCccccCCCcccccccccceeEEEcCCCCce
Q 019326          277 VASASSDG---VICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF  322 (343)
Q Consensus       277 l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  322 (343)
                      |++++.|+   .|++||+......   .+  ..+.+.|.+++|+|-..+
T Consensus       368 l~~~s~~~~~~~l~~~d~~g~~~~---~l--~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          368 VIYSSSQGMGSVLNLVSTDGRFKA---RL--PATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCEE---EC--CCSSSEEEEEEECCCCCC
T ss_pred             EEEEEcCCCccEEEEEECCCCcEE---Ee--eCCCCCCcCCcccccccc
Confidence            98888877   7999999754211   11  234467999999987544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.3e-26  Score=188.15  Aligned_cols=283  Identities=12%  Similarity=0.093  Sum_probs=189.1

Q ss_pred             eeEEeEEecCCCCC----eEEEEec--C--c-eEEEeeCCCeEEEEEcCCC---eeeeEeccCCCCCeEEEEEeCCCCCC
Q 019326           31 TLTQLFSYPAHLSP----ITTVAVS--G--T-AAASGGTDDTIHLYDLSTS---SSLGAIHHHESSSVTSLAFYTPQNLS   98 (343)
Q Consensus        31 ~~~~~~~~~~h~~~----v~~l~~~--~--~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~   98 (343)
                      .++.+..++...+.    +.++-|-  +  + .++++++ ..|++|+..++   +++.++..| ..+|..+.+.|+..  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~--   99 (356)
T 2w18_A           24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFA-EVPVLQIVPVPDVY--   99 (356)
T ss_dssp             CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECC-SSCEEEECCCTTCC--
T ss_pred             eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEecc-CceeEEEEEcCccc--
Confidence            45556666654433    4455554  2  2 4666665 67999999998   889999999 88999999999762  


Q ss_pred             CCceEEEeeCCCeE-EEEEC--CCc----ceeeeeeeccccEEEEEEecCCCEEEEEe--CCCeEEEEEccC-CceeE-E
Q 019326           99 VPRNLFSTSADGFV-SIFDA--DPF----VLLTSVKVHKKGVNDLAVHHSGKLALTVG--RDDCLAMVNLVR-GRRSF-Y  167 (343)
Q Consensus        99 ~~~~l~s~~~dg~i-~iwd~--~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~wd~~~-~~~~~-~  167 (343)
                        +++..+-.+=.+ .++-+  ...    .....-.+|...|.++   ++++.+.+++  .|+.|++|++.. ++.+. .
T Consensus       100 --~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~  174 (356)
T 2w18_A          100 --NLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ  174 (356)
T ss_dssp             --SCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred             --ceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence              233322222111 11111  111    1122223455455554   5666666544  599999999954 65544 3


Q ss_pred             EEcCCcceEEEEeC---CCCEEEEE-eCCcEEEEEcccceeEEEec-CC---cceEEeeecC-CCeE------------E
Q 019326          168 HKIGKEASLIKFDG---SGEKFFMV-TEEKVGIHQAEDAKLLCELD-GK---KRILCAAPGE-NGVL------------F  226 (343)
Q Consensus       168 ~~~~~~~~~~~~~~---~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~---~~i~~~~~~~-~~~l------------~  226 (343)
                      ..+...+..++|++   ++..++++ .|++|++||+.+++.++++. |.   ..+.+++|++ +.++            +
T Consensus       175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la  254 (356)
T 2w18_A          175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES  254 (356)
T ss_dssp             EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred             ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence            45567888999999   78999998 89999999999999999987 32   3566667774 3443            6


Q ss_pred             EEeCCCcEEEEECCCCceeEEe----cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc
Q 019326          227 TGGEDRSITAWDTNSGKVAYCI----EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  302 (343)
                      +|+.|++|++||..+++.+..+    +.+|...+.+..++  +.         ++++++.|++|+|||+.+++.....  
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL--  321 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALL--  321 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEE--
T ss_pred             ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEe--
Confidence            7889999999999999887665    23676665444333  44         8999999999999999987533211  


Q ss_pred             cccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          303 AEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       303 ~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                       ..+....+.+++|+||+++++++..|+.++.++
T Consensus       322 -~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          322 -PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             -CCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             -cCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence             122333455799999999999999999888664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=7.5e-26  Score=194.82  Aligned_cols=240  Identities=11%  Similarity=0.049  Sum_probs=189.9

Q ss_pred             eeEEeccC------CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCC---eEEEEEcC
Q 019326            2 SLIAGSYE------KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDD---TIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg---~i~iwd~~   70 (343)
                      +|+.++.+      +.|++||+..             .....+.+|...|.+++|+  ++.|++++.++   .|++||+.
T Consensus       145 ~l~~~s~~~~~~~~~~i~i~d~~g-------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~  211 (415)
T 2hqs_A          145 RIAYVVQTNGGQFPYELRVSDYDG-------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA  211 (415)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTS-------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EEEEEEecCCCCccceEEEEcCCC-------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence            35555554      7999999864             1234455788999999999  88999999875   99999999


Q ss_pred             CCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCCe--EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEE
Q 019326           71 TSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADGF--VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALT  147 (343)
Q Consensus        71 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  147 (343)
                      +++.. .+..+ ...+.+++|+|++     +.|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+++.|++
T Consensus       212 tg~~~-~l~~~-~~~~~~~~~spdg-----~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          212 NGAVR-QVASF-PRHNGAPAFSPDG-----SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             TCCEE-EEECC-SSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEE
T ss_pred             CCcEE-EeecC-CCcccCEEEcCCC-----CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEE
Confidence            98775 45566 6889999999999     6666 6666654  99999988765 566678889999999999999988


Q ss_pred             EeCC-C--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC---CcEEEEEcccceeEEEecCCcceEEeeec
Q 019326          148 VGRD-D--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE---EKVGIHQAEDAKLLCELDGKKRILCAAPG  220 (343)
Q Consensus       148 ~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~i~~~d~~~~~~~~~~~~~~~i~~~~~~  220 (343)
                      ++.+ +  .|.+||+.+++..........+..++|+|++++++.+ .+   ..|.+||+.+++... +.....+.+++|+
T Consensus       284 ~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~s  362 (415)
T 2hqs_A          284 TSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLA  362 (415)
T ss_dssp             EECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEEC
T ss_pred             EECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEc
Confidence            8864 4  6888899887754433445678889999999999888 43   589999999887743 4433488999998


Q ss_pred             C-CCeEEEEeCCC---cEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          221 E-NGVLFTGGEDR---SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       221 ~-~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      + +++|++++.++   .|++||+. +.....+. .|...|.+++|+|..
T Consensus       363 pdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~-~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          363 PNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP-ATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETT-SCCEEECC-CSSSEEEEEEECCCC
T ss_pred             CCCCEEEEEEcCCCccEEEEEECC-CCcEEEee-CCCCCCcCCcccccc
Confidence            4 56787777766   79999987 55677888 899999999999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.5e-25  Score=188.25  Aligned_cols=285  Identities=13%  Similarity=0.113  Sum_probs=198.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC-CeEEEEEcC--CCe--ee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD-DTIHLYDLS--TSS--SL   75 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~--~~~--~~   75 (343)
                      +++++.++.|++|++...      +   .......+ .|...+.+++|+  +++|++++.+ +.|++|+++  +++  .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~------~---~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~   77 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHE------G---ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA   77 (343)
T ss_dssp             EEEEGGGTEEEEEEECTT------S---CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEeCCCCCeEEEEEECCC------C---cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence            344478999999999631      1   12233333 467789999998  7888888876 999999998  554  34


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEEC---CCcceeeeeeeccccEEEEEEecCCCEEEEEe-C
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDA---DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG-R  150 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~  150 (343)
                      ..+..+  ..+..++|+|++     ++|++++ .++.|.+||+   ...+.+..+.. ...+.+++|+|+++++++++ .
T Consensus        78 ~~~~~~--~~~~~~~~s~dg-----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  149 (343)
T 1ri6_A           78 AESALP--GSLTHISTDHQG-----QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALK  149 (343)
T ss_dssp             EEEECS--SCCSEEEECTTS-----SEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGG
T ss_pred             cccccC--CCCcEEEEcCCC-----CEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCC
Confidence            455555  478999999999     6666555 4889999999   44444555543 34588899999999888877 8


Q ss_pred             CCeEEEEEccC-CceeEE----EE--cCCcceEEEEeCCCCEEEEE--eCCcEEEEEccc--cee--EEEec---C----
Q 019326          151 DDCLAMVNLVR-GRRSFY----HK--IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAED--AKL--LCELD---G----  210 (343)
Q Consensus       151 d~~i~~wd~~~-~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~--~~~--~~~~~---~----  210 (343)
                      ++.|.+||+.+ ++....    ..  ....+..++|+|++++++++  .++.+.+|++..  ++.  ...+.   .    
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  229 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence            99999999987 554321    12  23467789999999977655  688999999953  332  22222   1    


Q ss_pred             CcceEEeeecC-CCeEE-EEeCCCcEEEEECC--C--CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc-CC
Q 019326          211 KKRILCAAPGE-NGVLF-TGGEDRSITAWDTN--S--GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS-SD  283 (343)
Q Consensus       211 ~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~d  283 (343)
                      ...+..++|++ +++++ ++..++.|.+||+.  +  .+.+..+. .+.. +.+++|+|++.         +|++++ .|
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~-~~~~~~s~dg~---------~l~~~~~~~  298 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TETQ-PRGFNVDHSGK---------YLIAAGQKS  298 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSSS-CCCEEECTTSS---------EEEEECTTT
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCCc-cceEEECCCCC---------EEEEecCCC
Confidence            23566788985 45665 55579999999998  2  34455555 3433 88999999887         777777 68


Q ss_pred             CcEEEEecc--CccccCCCcccccccccceeEEEcCCC
Q 019326          284 GVICVWDVR--MAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       284 g~i~vwd~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      +.|.+|+++  ++..   ..+.....+....++++.++
T Consensus       299 ~~v~v~~~d~~~g~~---~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          299 HHISVYEIVGEQGLL---HEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             CEEEEEEEETTTTEE---EEEEEEECSSSCCEEEEEEE
T ss_pred             CeEEEEEEcCCCcee---eEccccccCCCCeeEEEEcc
Confidence            999999665  3321   12333444455667777654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=3.7e-25  Score=185.09  Aligned_cols=263  Identities=9%  Similarity=0.080  Sum_probs=194.2

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC-CCeEEEEEcCCCee-eeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT-DDTIHLYDLSTSSS-LGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~-~~~~   78 (343)
                      +++.+.++.|++||..+       +     +....+..+...+ +++|+  ++++++++. ++.|.+||..+++. ...+
T Consensus        13 ~v~~~~~~~v~~~d~~~-------~-----~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDT-------L-----EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             EEEEGGGTEEEEEETTT-------C-----CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             EEEecCCCeEEEEeCcc-------c-----ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            67888899999999876       2     2222333445556 99998  666666555 89999999999987 6677


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEE-eCCCe-
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV-GRDDC-  153 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~-  153 (343)
                      ..+ ..+..+++|+|++     ++++++..++   .|.+||+.+++.+..+.. .....+++|+|++++++++ ..++. 
T Consensus        80 ~~~-~~~~~~~~~s~dg-----~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           80 QEG-QSSMADVDITPDD-----QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             EEC-SSCCCCEEECTTS-----SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             ccC-CCCccceEECCCC-----CEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCce
Confidence            666 5555559999999     7788555553   899999999888887764 4456899999999855554 55577 


Q ss_pred             EEEEEccCCcee-----EEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccccee---EEEecCCcceEEeeecC-C
Q 019326          154 LAMVNLVRGRRS-----FYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKL---LCELDGKKRILCAAPGE-N  222 (343)
Q Consensus       154 i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~~-~  222 (343)
                      |.+|++.....+     ........+..++|+|++++++++  .++.+.+||+.+++.   +..+.....+..+++++ +
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  232 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG  232 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTS
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCC
Confidence            999998764432     122334567889999999976666  688999999999888   77787777788899984 5


Q ss_pred             CeEEEE-eCCCcEEEEECCCCce--eEEecccc----cc---cEEEEEEEecCCCCCCCCCCeEEE-EEcCCCcEEEEec
Q 019326          223 GVLFTG-GEDRSITAWDTNSGKV--AYCIEDAH----SA---RVKGIVVLTKNDGGSTAENPYLVA-SASSDGVICVWDV  291 (343)
Q Consensus       223 ~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~h----~~---~v~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~  291 (343)
                      ++++++ ..++.|.+||..+++.  +..+. .+    ..   ....++|+|++.         +|+ ++..++.|.+||+
T Consensus       233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~---------~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          233 STVYVLTESTVDVFNFNQLSGTLSFVKSFG-HGLLIDPRPLFGANQMALNKTET---------KLFISANISRELKVFTI  302 (331)
T ss_dssp             SEEEEECSSEEEEEEEETTTTEEEEEEEEE-CCCCCCCGGGTTCCCEEECTTSS---------EEEEEETTTTEEEEEET
T ss_pred             CEEEEEEcCCCEEEEEECCCCceeeecccc-cccccCCCCcccccceEECCCCC---------EEEEecCCCCcEEEEEe
Confidence            655544 4578899999998876  44433 11    22   225588988876         665 4555679999999


Q ss_pred             cCcc
Q 019326          292 RMAI  295 (343)
Q Consensus       292 ~~~~  295 (343)
                      ....
T Consensus       303 ~~~~  306 (331)
T 3u4y_A          303 SGKV  306 (331)
T ss_dssp             TSCE
T ss_pred             cCCc
Confidence            8753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=2e-24  Score=182.16  Aligned_cols=267  Identities=13%  Similarity=0.108  Sum_probs=208.5

Q ss_pred             CCCeEEEEec--CceEEEeeC-------CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCc-eEEEeeCCCe
Q 019326           42 LSPITTVAVS--GTAAASGGT-------DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPR-NLFSTSADGF  111 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~s~~~dg~  111 (343)
                      ...+..++|+  ++.+++++.       ++.|.+||..+++.+..+...  ..+..++|+|++     + .+++...++.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg-----~~l~v~~~~~~~  112 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTT-----QTLWFGNTVNSA  112 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTT-----TEEEEEETTTTE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCC-----CEEEEEecCCCE
Confidence            4567889998  677777764       568999999999988888755  457889999998     5 4555666899


Q ss_pred             EEEEECCCcceeeeeeecccc---------EEEEEEecCCCEEEEEe--CCCeEEEEEccCCceeEEEE-cCCcceEEEE
Q 019326          112 VSIFDADPFVLLTSVKVHKKG---------VNDLAVHHSGKLALTVG--RDDCLAMVNLVRGRRSFYHK-IGKEASLIKF  179 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~  179 (343)
                      |.+||..+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||+.+++...... ....+..++|
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            999999999988888765432         78899999999877776  47899999999998877776 4556889999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEcccceeEEEecC-----CcceEEeeecC-CCeEEEEe-CCCcEEEEECCCCceeEEeccc
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG-----KKRILCAAPGE-NGVLFTGG-EDRSITAWDTNSGKVAYCIEDA  251 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-----~~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  251 (343)
                      +|+++.++++ .++.+.+||..+++....+..     ...+..+++++ ++++++++ .++.|.+||..+++.+..+. .
T Consensus       193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~  271 (353)
T 3vgz_A          193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-A  271 (353)
T ss_dssp             ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-C
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-c
Confidence            9999999988 889999999999998877763     34577788884 56555554 45999999999999888887 3


Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEE-EEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVA-SASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      .. + ..++|++++.         +++ +...++.|.+||+.+++..     ........+.+++++++++++......+
T Consensus       272 ~~-~-~~~~~s~dg~---------~l~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          272 PE-S-LAVLFNPARN---------EAYVTHRQAGKVSVIDAKSYKVV-----KTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             SS-C-CCEEEETTTT---------EEEEEETTTTEEEEEETTTTEEE-----EEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             CC-C-ceEEECCCCC---------EEEEEECCCCeEEEEECCCCeEE-----EEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            22 2 5688998876         554 5557999999999887532     2334445689999999999776666554


Q ss_pred             CC
Q 019326          331 AP  332 (343)
Q Consensus       331 ~~  332 (343)
                      ..
T Consensus       336 ~~  337 (353)
T 3vgz_A          336 ST  337 (353)
T ss_dssp             CB
T ss_pred             cc
Confidence            33

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2.8e-24  Score=179.68  Aligned_cols=267  Identities=12%  Similarity=0.038  Sum_probs=196.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcce-eeeeeec
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVL-LTSVKVH  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~  129 (343)
                      +..+++.+.++.|++||..+++.+..+..+ ...+ .++|+|++     +++++++. ++.|.+||+.+++. ...+..+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg-----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDC-----SNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSS-----CEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCC-----CEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            445778888999999999999998888766 5666 99999999     65655555 89999999999887 7777766


Q ss_pred             cccEEEEEEecCCCEEEEEeCCC---eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCc-EEEEEcccce
Q 019326          130 KKGVNDLAVHHSGKLALTVGRDD---CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEK-VGIHQAEDAK  203 (343)
Q Consensus       130 ~~~v~~i~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-i~~~d~~~~~  203 (343)
                      ..+..+++|+|++++++++..++   .|.+||+.+++..........+..++|+|++++++++  .++. +.+|++....
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            66665599999999999555553   8999999999988888777888999999999876666  4577 9999987533


Q ss_pred             eE-----EEecCCcceEEeeecC-CCeE-EEEeCCCcEEEEECCCCce---eEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          204 LL-----CELDGKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNSGKV---AYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       204 ~~-----~~~~~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      .+     ..+........+++++ ++++ +++..++.|++||+.+++.   +..+.  +...+..++|+|++.       
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~-------  233 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGS-------  233 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSS-------
T ss_pred             cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCC-------
Confidence            22     3334456678899985 4544 4555789999999999988   77776  446778999999887       


Q ss_pred             CeEEEEEc-CCCcEEEEeccCccccCCCcccc-----cccccceeEEEcCCCCceeccccC-CCCCCCcc
Q 019326          274 PYLVASAS-SDGVICVWDVRMAIKEKPLPLAE-----AKTNSRLTCLAGSSTKSFKRPQIG-DSAPKGEE  336 (343)
Q Consensus       274 ~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~~~~~~~-~~~~~~~~  336 (343)
                        +++.++ .++.|.+||+.+++......+..     .........++++|++++++.... ++.+..++
T Consensus       234 --~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          234 --TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             --EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence              666554 57899999999875411100000     011112356899999997755444 33444333

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=6.8e-25  Score=194.50  Aligned_cols=259  Identities=11%  Similarity=0.069  Sum_probs=199.5

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC--CCcceeeeeeec
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA--DPFVLLTSVKVH  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~  129 (343)
                      +..+++++.|++|.+||..+++.+..+..+ .. +..++|+|++     ++|++++.|++|++||+  .+++.+.++. +
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-~~-~~~v~~spdg-----~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~  220 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YA-VHISRMSASG-----RYLLVIGRDARIDMIDLWAKEPTKVAEIK-I  220 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEEEEECS-TT-EEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCEEEEEEE-C
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEEEEecC-cc-cceEEECCCC-----CEEEEECCCCeEEEEECcCCCCcEEEEEe-c
Confidence            778888999999999999999999999855 23 8999999999     89999999999999999  8888888887 4


Q ss_pred             cccEEEEEEec----CCCEEEEEeC-CCeEEEEEccCCceeEEEEcC------------CcceEEEEeCCCCEEEEE--e
Q 019326          130 KKGVNDLAVHH----SGKLALTVGR-DDCLAMVNLVRGRRSFYHKIG------------KEASLIKFDGSGEKFFMV--T  190 (343)
Q Consensus       130 ~~~v~~i~~~~----~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~  190 (343)
                      ...+..++|+|    +++++++++. +++|.+||..+++.+......            ..+..+.++|++..+++.  .
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            55679999999    9999998885 899999999999887766542            257789999988877666  7


Q ss_pred             CCcEEEEEcccceeEE--EecCCcceEEeeecC-CCeEEE-EeCCCcEEEEECCCCceeEEeccc---ccccEEEEEEEe
Q 019326          191 EEKVGIHQAEDAKLLC--ELDGKKRILCAAPGE-NGVLFT-GGEDRSITAWDTNSGKVAYCIEDA---HSARVKGIVVLT  263 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~--~~~~~~~i~~~~~~~-~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~---h~~~v~~~~~~~  263 (343)
                      ++.|.+||..+.+.+.  .+.+...+..+.|++ ++++++ +..+++|.+||..+++.+..+..+   |......+ ++|
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p  379 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP  379 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred             CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence            8999999998866544  555666677888984 565554 556899999999999988887722   54433333 345


Q ss_pred             cCCCCCCCCCCeEEEEEc-CCCcEEEEeccCcccc-C-CCccccccc-ccceeEEEcCCCCceecccc
Q 019326          264 KNDGGSTAENPYLVASAS-SDGVICVWDVRMAIKE-K-PLPLAEAKT-NSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~-~-~~~~~~~~~-~~~i~~~~~s~~~~~~~~~~  327 (343)
                      ++.        .+++++. .|++|.+||+.+.... . ...+..... ...+..++++|+++++....
T Consensus       380 ~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          380 KYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             TTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             CCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            422        2677775 6899999999873110 0 112222222 24578899999999988876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=3.1e-25  Score=185.75  Aligned_cols=261  Identities=13%  Similarity=0.067  Sum_probs=198.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEec-CCCC-CeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYP-AHLS-PITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~   76 (343)
                      .|++++.++.|++||..+            .+....+. ++.. .+.+++|+  ++.+ +++..++.|.+||+.+++.+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~   70 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEK------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEETTTEEEEEETTT------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCeEEEEECCC------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence            378889999999999876            22233333 2222 47888998  5554 566668999999999998887


Q ss_pred             EeccCC----CCCeEEEEEeCCCCCCCCceEEEee------------CCCeEEEEECCCcceeeeeeeccccEEEEEEec
Q 019326           77 AIHHHE----SSSVTSLAFYTPQNLSVPRNLFSTS------------ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH  140 (343)
Q Consensus        77 ~~~~~~----~~~v~~l~~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~  140 (343)
                      .+....    ...+..++|+|++     ++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           71 RIDLSTPEERVKSLFGAALSPDG-----KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             EEECCBTTEEEECTTCEEECTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             eEEcCCcccccccccceEECCCC-----CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence            776431    1267789999998     6788775            579999999999888777764 45678899999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCC-----------------------cEE
Q 019326          141 SGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEE-----------------------KVG  195 (343)
Q Consensus       141 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------------~i~  195 (343)
                      ++++++++  ++.|.+||+.+++.............+.|+|++..++..  .++                       .+.
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            99988887  688999999998877665554422334788988876555  222                       468


Q ss_pred             EEEcccceeEEEec---CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCC
Q 019326          196 IHQAEDAKLLCELD---GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA  271 (343)
Q Consensus       196 ~~d~~~~~~~~~~~---~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  271 (343)
                      +||+.+++.. .+.   +...+.++++++ +++++++  ++.|.+||+.+++.+..+.  ....+.+++|+|++.     
T Consensus       223 ~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-----  292 (337)
T 1pby_B          223 TMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGS-----  292 (337)
T ss_dssp             EEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSC-----
T ss_pred             EEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCC-----
Confidence            9999988765 322   556678899985 5677777  7999999999998888877  345678999999887     


Q ss_pred             CCCeEEEEEcCCCcEEEEeccCccc
Q 019326          272 ENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       272 ~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                          +|++++.|+.|++||+.+++.
T Consensus       293 ----~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          293 ----TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             ----EEEEESBSSEEEEEETTTCCE
T ss_pred             ----EEEEEcCCCcEEEEECcCCcE
Confidence                888889999999999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=5.3e-25  Score=203.68  Aligned_cols=292  Identities=10%  Similarity=0.031  Sum_probs=210.9

Q ss_pred             eeEEecc-CC-----eEEEEEeecCCCCCCCCcceeeEEeEEecCCC----------------------CCeEEEEec--
Q 019326            2 SLIAGSY-EK-----FIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL----------------------SPITTVAVS--   51 (343)
Q Consensus         2 ~l~~g~~-d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~----------------------~~v~~l~~~--   51 (343)
                      .|++++. |+     .|++||+.+       ++   ...+.....+.                      ..|.+++|+  
T Consensus        50 ~la~~~~~d~~~~~~~i~~~d~~~-------g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD  119 (741)
T 2ecf_A           50 RVTFLRGKDSDRNQLDLWSYDIGS-------GQ---TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD  119 (741)
T ss_dssp             EEEEEECCSSCTTEEEEEEEETTT-------CC---EEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred             EEEEEeccCCCCcccEEEEEECCC-------Cc---eeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence            4677777 87     899999876       21   12222222222                      347889998  


Q ss_pred             CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec
Q 019326           52 GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  129 (343)
                      |++|++++. +.|++||+.++.  ....+..+ ...+..++|+|++     ++|+.++ ++.|++||+.+++.......+
T Consensus       120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG-----~~la~~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          120 AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKG-----GFVSFIR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             SSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTS-----SEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred             CCEEEEEeC-CcEEEEECCCCCcceEEEcccC-CcccccccCCCCC-----CEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence            888888886 999999999873  44556666 7889999999999     7888877 469999999987766554433


Q ss_pred             ccc----------------EEEEEEecCCCEEEEEeCCC---------------------------------eEEEEEcc
Q 019326          130 KKG----------------VNDLAVHHSGKLALTVGRDD---------------------------------CLAMVNLV  160 (343)
Q Consensus       130 ~~~----------------v~~i~~~~~~~~l~~~~~d~---------------------------------~i~~wd~~  160 (343)
                      ...                +.+++|+|||++|++++.|+                                 .|.+||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence            332                47799999999999988765                                 88999998


Q ss_pred             C-CceeEEE---EcCCcceEEEEeCCCCEEEEE-e-----CCcEEEEEcccceeEEEecCCc-----ceEEeeec-CCCe
Q 019326          161 R-GRRSFYH---KIGKEASLIKFDGSGEKFFMV-T-----EEKVGIHQAEDAKLLCELDGKK-----RILCAAPG-ENGV  224 (343)
Q Consensus       161 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~-----~~~i~~~d~~~~~~~~~~~~~~-----~i~~~~~~-~~~~  224 (343)
                      + ++.....   .....+..++| |+++.+++. .     +..|.+||+.+++....+....     .+..+.|+ ++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~  350 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI  350 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence            8 7754433   13356788999 999999877 3     4579999999988776665222     34578888 4568


Q ss_pred             EEEEeCCCcEEEEECC-CCceeEEecccccccEEEE-EEEecCCCCCCCCCCeEEE-EEcCCC--cEEEEeccCccccCC
Q 019326          225 LFTGGEDRSITAWDTN-SGKVAYCIEDAHSARVKGI-VVLTKNDGGSTAENPYLVA-SASSDG--VICVWDVRMAIKEKP  299 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~  299 (343)
                      +++++.+|.++||.+. ++. ...+. .|...+..+ .|++++.         .|+ +++.|+  .++||++..... ..
T Consensus       351 ~~~~~~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~---------~l~~~~~~~~~~~~~l~~~~~~g~-~~  418 (741)
T 2ecf_A          351 LWSSERTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAG---------LAYFRAGIESARESQIYAVPLQGG-QP  418 (741)
T ss_dssp             EEEECTTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTT---------EEEEEECSSCTTCBEEEEEETTCC-CC
T ss_pred             EEEecCCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCC---------EEEEEEeCCCCceEEEEEEEcCCC-Ce
Confidence            8888899988888765 345 67777 777888887 5999886         564 555565  899999875211 11


Q ss_pred             CcccccccccceeEEEcCCCCceecccc
Q 019326          300 LPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       300 ~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      ..+   .....+..++||||+++++...
T Consensus       419 ~~l---~~~~~~~~~~~spdg~~l~~~~  443 (741)
T 2ecf_A          419 QRL---SKAPGMHSASFARNASVYVDSW  443 (741)
T ss_dssp             EEC---CCSCSEEEEEECTTSSEEEEEE
T ss_pred             eec---ccCCCceEEEECCCCCEEEEEe
Confidence            122   2244578999999998776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=5.8e-25  Score=180.51  Aligned_cols=252  Identities=11%  Similarity=0.005  Sum_probs=189.2

Q ss_pred             EeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeecc-ccEE
Q 019326           57 SGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHK-KGVN  134 (343)
Q Consensus        57 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~-~~v~  134 (343)
                      .++.|+.|++||+.+++... +..| ...|.+++|+|++     ++|++++ ++.|++||+.+ ++.......+. ..+.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~-~~~v~~~~~spdg-----~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQT-PELFEAPNWSPDG-----KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEE-SSCCEEEEECTTS-----SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             CCCcceeEEEEeCCCCceee-eccC-CcceEeeEECCCC-----CEEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence            35678999999999887664 4456 7899999999999     7888876 78999999998 87776666553 6788


Q ss_pred             EEEEecCCCEEEEEeC--CCeEEEE--EccCCceeEEEEcCCcceEEEEeCCCCEEE-EE-eCCcEEEEEcc--cceeEE
Q 019326          135 DLAVHHSGKLALTVGR--DDCLAMV--NLVRGRRSFYHKIGKEASLIKFDGSGEKFF-MV-TEEKVGIHQAE--DAKLLC  206 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~--d~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~d~~--~~~~~~  206 (343)
                      +++|+|++++|++++.  ++...+|  ++.+++ .........+..++|+|+++.++ ++ .++.+.+|++.  +++...
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            9999999999999983  3445555  544444 33344445588899999999887 44 78888888864  444444


Q ss_pred             EecCCcceEEeeecC-CCeEEEEe-CCCcEEEEECC-CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          207 ELDGKKRILCAAPGE-NGVLFTGG-EDRSITAWDTN-SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       207 ~~~~~~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      ...+...+.++.|++ +++++.++ .++.+++|++. .+..+..+. .|...+..++|+|++.         +|++++.+
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~---------~l~~~~~~  237 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGD---------KVVFVSYD  237 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSS---------EEEEEEEE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCC---------EEEEEEcC
Confidence            444777899999985 55566554 58999999886 556667777 7888999999999887         88888766


Q ss_pred             -----------CcEEEEeccCccccCCCccccc-ccccceeEEEcCCCCceeccccCCC
Q 019326          284 -----------GVICVWDVRMAIKEKPLPLAEA-KTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       284 -----------g~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                                 +.|.+||+.++..   ..+... .+...+.+++|+|++++++....+.
T Consensus       238 ~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          238 ADVFDHPRDLDVRVQLMDMDGGNV---ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTCCSCCSSEEEEEEEEETTSCSC---EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCcccccCceEEEEEecCCCCc---eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                       5699999987632   122222 3345789999999999888776665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=1.1e-24  Score=182.47  Aligned_cols=262  Identities=10%  Similarity=0.016  Sum_probs=196.9

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC-CeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeec-
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESS-SVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVH-  129 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-  129 (343)
                      ++|++++.++.|++||+.+++.+..+...... .+..++|+|++     +.+ +++..++.|.+||+.+++.+..+... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-----RIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS-----SEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCC-----CEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence            57899999999999999999988888654112 58899999998     554 56667899999999998887776632 


Q ss_pred             ----cccEEEEEEecCCCEEEEEe------------CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCc
Q 019326          130 ----KKGVNDLAVHHSGKLALTVG------------RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEK  193 (343)
Q Consensus       130 ----~~~v~~i~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (343)
                          ...+..++|+|++++++++.            .++.|.+||+.+++..........+..++|+|++++++++ ++.
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~  155 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRD  155 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSS
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCe
Confidence                22567899999999988886            5799999999998887777777778889999999988887 789


Q ss_pred             EEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEe-CCC-----------------------cEEEEECCCCcee-EE
Q 019326          194 VGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGG-EDR-----------------------SITAWDTNSGKVA-YC  247 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~-~dg-----------------------~i~i~d~~~~~~~-~~  247 (343)
                      +.+||+.+++....+........+.++ ++..++..+ .++                       .|.+||+.+++.. ..
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            999999999988777632211122444 233333332 222                       4789999998865 22


Q ss_pred             ecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc
Q 019326          248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      +. .+...+.+++|+|++.         +++++  ++.|.+||+.+++..     ........+.++++++++++++.+.
T Consensus       236 ~~-~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          236 VR-IMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASI-----KRVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EE-ECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEE-----EEEECSSCCCEEEECTTSCEEEEES
T ss_pred             cC-CCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCc-----ceecCCCceeeEEECCCCCEEEEEc
Confidence            33 5666788999999887         88877  799999999876422     2233345688999999999877776


Q ss_pred             CCCCCCCccc
Q 019326          328 GDSAPKGEEK  337 (343)
Q Consensus       328 ~~~~~~~~~~  337 (343)
                      .++.+...+.
T Consensus       299 ~~~~i~v~d~  308 (337)
T 1pby_B          299 ALGDLAAYDA  308 (337)
T ss_dssp             BSSEEEEEET
T ss_pred             CCCcEEEEEC
Confidence            6665554443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=9e-25  Score=179.37  Aligned_cols=248  Identities=10%  Similarity=-0.001  Sum_probs=184.1

Q ss_pred             eccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC-CeeeeEeccCC
Q 019326            6 GSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST-SSSLGAIHHHE   82 (343)
Q Consensus         6 g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~   82 (343)
                      ++.++.|++||+..       ++      ...+..|...|.+++|+  +++|++++ ++.|++||+.+ ++.......+.
T Consensus        18 ~~~~~~i~~~d~~~-------~~------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~   83 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT-------RK------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA   83 (297)
T ss_dssp             CCCCEEEEEEETTT-------TE------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred             CCcceeEEEEeCCC-------Cc------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence            45788999999876       21      12334578899999999  78888876 78999999998 87776665553


Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEE--EECCCcceeeeeeeccccEEEEEEecCCCEEE-EEeCCCeEEEE
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSI--FDADPFVLLTSVKVHKKGVNDLAVHHSGKLAL-TVGRDDCLAMV  157 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~i~~w  157 (343)
                      ...+.+++|+|++     ++|++++.  ++...+  |+..+++ ...+..+ ..+..++|+|+++.|+ ++..++.+.+|
T Consensus        84 ~~~~~~~~~spdg-----~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           84 TICNNDHGISPDG-----ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             CCBCSCCEECTTS-----SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             cccccceEECCCC-----CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEE
Confidence            5788999999999     78888883  344444  5555544 3444433 3588999999999877 77789999999


Q ss_pred             Ecc--CCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcc-cceeEEEec-CCcceEEeeecC-CCeEEEEeC
Q 019326          158 NLV--RGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAE-DAKLLCELD-GKKRILCAAPGE-NGVLFTGGE  230 (343)
Q Consensus       158 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~-~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~  230 (343)
                      ++.  +++..........+..++|+|+++.++.+  .++.+.+|++. .+.....+. +...+.++.|++ +++|++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          157 SMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             EEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            864  44444444455678999999999988776  48889999886 444555554 667888999984 567777765


Q ss_pred             C-----------CcEEEEECCCCce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC
Q 019326          231 D-----------RSITAWDTNSGKV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG  284 (343)
Q Consensus       231 d-----------g~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg  284 (343)
                      +           +.|++||+.+++.  +..+. +|...+..++|+|++.         +|++++.|.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~---------~l~~~~~~~  293 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQGTMNSPNWSPDGD---------EFAYVRYFP  293 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTTTSCSCCBCTTSS---------EEEEEEECC
T ss_pred             CCCCCcccccCceEEEEEecCCCCceeeeccC-CCCcccccceECCCCC---------EEEEEEecc
Confidence            5           5699999988765  44444 6788899999998887         888777653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.7e-24  Score=199.70  Aligned_cols=294  Identities=10%  Similarity=-0.016  Sum_probs=202.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCC---CeEEEEec--CceEEEeeCC---------CeEEEEE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLS---PITTVAVS--GTAAASGGTD---------DTIHLYD   68 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~~~d---------g~i~iwd   68 (343)
                      ++..+.||.|++||+.+       +     +....+.+|..   .|.+++|+  |++|++++.+         +.|.+||
T Consensus        30 ~~~~~~dg~i~~~d~~~-------g-----~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           30 FIYREQKGTVRLWNVET-------N-----TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             BCCCCSSSCEEEBCGGG-------C-----CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEEEeCCCCEEEEECCC-------C-----cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            34457899999999987       2     22233445554   49999999  8889988764         7888999


Q ss_pred             cCCCeeeeEec---cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccE------------
Q 019326           69 LSTSSSLGAIH---HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGV------------  133 (343)
Q Consensus        69 ~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------  133 (343)
                      +.+++. ..+.   .+ ...+..++|+|++     +.|+.++. +.|++||+.+++.......+...+            
T Consensus        98 ~~~~~~-~~l~~~~~~-~~~~~~~~~SPdG-----~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e  169 (723)
T 1xfd_A           98 IPHGDP-QSLDPPEVS-NAKLQYAGWGPKG-----QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE  169 (723)
T ss_dssp             SSSCCC-EECCCTTCC-SCCCSBCCBCSST-----TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred             CCCCce-EeccCCccc-cccccccEECCCC-----CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence            998876 3333   23 4458899999999     78888876 799999999887766555444333            


Q ss_pred             ------EEEEEecCCCEEEEEeCCC----------------------------------eEEEEEccCCceeEEEEc---
Q 019326          134 ------NDLAVHHSGKLALTVGRDD----------------------------------CLAMVNLVRGRRSFYHKI---  170 (343)
Q Consensus       134 ------~~i~~~~~~~~l~~~~~d~----------------------------------~i~~wd~~~~~~~~~~~~---  170 (343)
                            .+++|+|||+.|++++.++                                  .|++||+.+++.......   
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence                  7899999999999987553                                  799999988875333332   


Q ss_pred             ----CCcceEEEEeCCCCEEEEE-eC----CcEEEEEcccceeEEEec--CCcce----EEeeec-CCCeEEE--EeCCC
Q 019326          171 ----GKEASLIKFDGSGEKFFMV-TE----EKVGIHQAEDAKLLCELD--GKKRI----LCAAPG-ENGVLFT--GGEDR  232 (343)
Q Consensus       171 ----~~~~~~~~~~~~~~~~~~~-~~----~~i~~~d~~~~~~~~~~~--~~~~i----~~~~~~-~~~~l~~--~~~dg  232 (343)
                          ...+..++|+|++++++.. ..    ..|.+||+.+++....+.  +...+    ..+.|+ +++.|+.  +..++
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence                3457789999999988766 32    468999999988766543  33333    367888 4555553  55667


Q ss_pred             ------cEEEEE-CCCCce--eEEecccccccEEE-EEEEecCCCCCCCCCCeEEEEEcCC---CcEEEEeccCccccCC
Q 019326          233 ------SITAWD-TNSGKV--AYCIEDAHSARVKG-IVVLTKNDGGSTAENPYLVASASSD---GVICVWDVRMAIKEKP  299 (343)
Q Consensus       233 ------~i~i~d-~~~~~~--~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~  299 (343)
                            .|.+|| ...++.  ...+. .+...+.. ++|+|++.         .|+..+.+   +.+++|++........
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l~~~~~~~~~~~  399 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGN---------KIYFLSTEDLPRRRQLYSANTVGNFNR  399 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTT---------EEEEEESSSCTTCCEEEEECSSTTCCC
T ss_pred             CCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCC---------EEEEEEcCCCCcceEEEEEeCCCCCCc
Confidence                  577777 344431  45555 33344444 68999887         77655544   8899999975432122


Q ss_pred             Ccccc-cccccceeEEEcCCCCceeccc
Q 019326          300 LPLAE-AKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       300 ~~~~~-~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                      ..+.. ..+...+..++|+|++++++..
T Consensus       400 ~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          400 QCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             BCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ceecccccCCCCeEEEEECCCCCEEEEE
Confidence            22221 1134458899999999877654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=4.3e-24  Score=196.58  Aligned_cols=261  Identities=10%  Similarity=0.015  Sum_probs=189.2

Q ss_pred             CCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC--
Q 019326           43 SPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP--  119 (343)
Q Consensus        43 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--  119 (343)
                      ..|.+++|+ ...++.+ .++.|++||+.+++..... .+ ...+.+++|+|++     +.|+++ .++.|++||+.+  
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~-~~-~~~~~~~~~SpdG-----~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLF-DT-NEETASLDFSPVG-----DRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEE-CC-TTCCTTCEECTTS-----SEEEEE-ETTEEEEEECBCTT
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEcc-CC-cccccCCcCCCCC-----CEEEEE-ECCeEEEEecCccc
Confidence            579999999 4444444 4699999999988765444 34 5778899999999     778874 789999999988  


Q ss_pred             ---cceeeeeeecccc--------------EEEEEEecCCCEEEEEe---------------------------------
Q 019326          120 ---FVLLTSVKVHKKG--------------VNDLAVHHSGKLALTVG---------------------------------  149 (343)
Q Consensus       120 ---~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~---------------------------------  149 (343)
                         ++.......+...              +.+++|+|||++|++++                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               7766544444333              47899999999999987                                 


Q ss_pred             CCCeEEEEEccCCceeEEEE---cCCcceEEEEeCCCCEEEEE-eCC-----cEEEEEcccceeEEEec---CCc---ce
Q 019326          150 RDDCLAMVNLVRGRRSFYHK---IGKEASLIKFDGSGEKFFMV-TEE-----KVGIHQAEDAKLLCELD---GKK---RI  214 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~-----~i~~~d~~~~~~~~~~~---~~~---~i  214 (343)
                      .+..|.+||+.+++......   ....+..++|+|+++.++++ .++     .+.+||+.+++....+.   +..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            45789999999887544332   23557889999999988887 554     89999999983333322   222   23


Q ss_pred             EEeeecC---CCeEEEEeCCCcEEEEECC-CCceeEEecccccccEEE-EEEEecCCCCCCCCCCeEEEE-EcCCC----
Q 019326          215 LCAAPGE---NGVLFTGGEDRSITAWDTN-SGKVAYCIEDAHSARVKG-IVVLTKNDGGSTAENPYLVAS-ASSDG----  284 (343)
Q Consensus       215 ~~~~~~~---~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s-~~~dg----  284 (343)
                      ..+.|++   ++++++++.+|.+++|++. ++..+..+. .|...+.. ++|+|++.         .|+. ++.++    
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~---------~l~~~~~~~~~~~~  382 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGT---------RLYFESTEASPLER  382 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSS---------EEEEEESSSCTTCB
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCC---------EEEEEecCCCCceE
Confidence            5677875   4578888889999999876 677777887 77777876 79998876         6654 44454    


Q ss_pred             cEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          285 VICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       285 ~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      .|..||+.++.   ...   ......+.+++|||++++++....
T Consensus       383 ~l~~~d~~~~~---~~~---l~~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          383 HFYCIDIKGGK---TKD---LTPESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEEEEETTCCC---CEE---SCCSSSEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEEcCCCC---cee---ccCCCceEEEEECCCCCEEEEEec
Confidence            56666666542   111   223455889999999998776533

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.1e-23  Score=194.98  Aligned_cols=264  Identities=12%  Similarity=0.100  Sum_probs=198.5

Q ss_pred             CCCeEEEEec--CceEEEeeC-CC-----eEEEEEcCCCeeeeEeccCCCC------------------------CeEEE
Q 019326           42 LSPITTVAVS--GTAAASGGT-DD-----TIHLYDLSTSSSLGAIHHHESS------------------------SVTSL   89 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~------------------------~v~~l   89 (343)
                      ...|.+++|+  |++|++++. |+     .|++||+.+++....+..+ ..                        .+.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCccee
Confidence            4579999999  889999998 88     8999999999877766544 22                        37899


Q ss_pred             EEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE
Q 019326           90 AFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus        90 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                      +|+|++     ++|++++. +.|++||+.+++  ....+..|...+..++|+|+|++|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg-----~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDA-----QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTS-----SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCC-----CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            999999     78888876 999999998873  4556667888899999999999999887 46999999998775543


Q ss_pred             EEcCCc-----------------ceEEEEeCCCCEEEEE-eCC---------------------------------cEEE
Q 019326          168 HKIGKE-----------------ASLIKFDGSGEKFFMV-TEE---------------------------------KVGI  196 (343)
Q Consensus       168 ~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~---------------------------------~i~~  196 (343)
                      ......                 +..+.|+|+|++|+.+ .++                                 .|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            332221                 4679999999999888 544                                 7888


Q ss_pred             EEccc-ceeEEEe---cCCcceEEeeecC-CCeEEEEeC-----CCcEEEEECCCCceeEEecccccc----cEEEEEEE
Q 019326          197 HQAED-AKLLCEL---DGKKRILCAAPGE-NGVLFTGGE-----DRSITAWDTNSGKVAYCIEDAHSA----RVKGIVVL  262 (343)
Q Consensus       197 ~d~~~-~~~~~~~---~~~~~i~~~~~~~-~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~h~~----~v~~~~~~  262 (343)
                      ||+.+ ++.....   .+...+..++| + ++.|+.++.     +..|++||+.+++....+. .+..    .+..++|+
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEEC
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEEC
Confidence            99988 7765443   25677888888 6 466765543     5679999999998777666 4433    45688898


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEE-EcCCCCceeccccC
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCL-AGSSTKSFKRPQIG  328 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~~~~~~~  328 (343)
                      |++.         ++++++.||.++||.++....  ...+.  .....+..+ +|+++++.++....
T Consensus       346 pdg~---------~~~~~~~~g~~~l~~~~~~~~--~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          346 DDGS---------ILWSSERTGFQHLYRIDSKGK--AAALT--HGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             TTSC---------EEEEECTTSSCEEEEECSSSC--EEESC--CSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CCCe---------EEEEecCCCccEEEEEcCCCC--eeeee--ecceEEEeEeEEeCCCCEEEEEEe
Confidence            8876         899999999989988763211  11111  223456666 59999986654433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.6e-22  Score=170.54  Aligned_cols=246  Identities=11%  Similarity=0.127  Sum_probs=189.4

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEeccCCCC-
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIHHHESS-   84 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-   84 (343)
                      ++.|.+||..+       +     +....+.. ...+..++|+  ++++ ++...++.|.+||..+++.+..+..+... 
T Consensus        68 ~~~v~~~d~~~-------~-----~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  134 (353)
T 3vgz_A           68 GGVVYRLDPVT-------L-----EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR  134 (353)
T ss_dssp             SEEEEEECTTT-------C-----CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC
T ss_pred             CccEEEEcCCC-------C-----eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc
Confidence            56899999876       2     22222222 2346778887  6644 55566899999999999988888765111 


Q ss_pred             -------CeEEEEEeCCCCCCCCceEEEee--CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           85 -------SVTSLAFYTPQNLSVPRNLFSTS--ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        85 -------~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                             .+.+++|+|++     +++++++  .++.|.+||..+++.+..+..+...+..++|+|+++++++++.++.|.
T Consensus       135 ~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~  209 (353)
T 3vgz_A          135 TEEVRPLQPRELVADDAT-----NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELI  209 (353)
T ss_dssp             CSSCCCCEEEEEEEETTT-----TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEE
T ss_pred             ccccCCCCCceEEECCCC-----CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEE
Confidence                   27899999998     6666665  478999999999998888875666688999999999999999999999


Q ss_pred             EEEccCCceeEEEEc-----CCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEE-
Q 019326          156 MVNLVRGRRSFYHKI-----GKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLF-  226 (343)
Q Consensus       156 ~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~-  226 (343)
                      +||+.+++.......     ...+..++|+|+++.++++  .++.+.+||..+++.+..+....+ ..+.++ ++++++ 
T Consensus       210 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v  288 (353)
T 3vgz_A          210 TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYV  288 (353)
T ss_dssp             EEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEE
T ss_pred             EEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEE
Confidence            999999988776665     2346679999999988777  558999999999998888874443 457777 455454 


Q ss_pred             EEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG  284 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg  284 (343)
                      +...++.|.+||..+++.+..+.  ....+.+++|++++.         +|+.+..++
T Consensus       289 ~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~---------~l~v~~~~~  335 (353)
T 3vgz_A          289 THRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSADGK---------TLYVSVKQK  335 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECTTSC---------EEEEEEECC
T ss_pred             EECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCC---------EEEEEEccc
Confidence            44578999999999999888887  345789999998887         676665553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=5.1e-23  Score=172.70  Aligned_cols=264  Identities=8%  Similarity=0.088  Sum_probs=181.8

Q ss_pred             eEEEeeCCCeEEEEEcC-CC--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-CeEEEEECC--Ccc--eeee
Q 019326           54 AAASGGTDDTIHLYDLS-TS--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-GFVSIFDAD--PFV--LLTS  125 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~-~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~  125 (343)
                      .+++++.|+.|++|+++ ++  +.+..+ .+ ...+.+++|+|++     ++|++++.+ +.|.+|+++  +++  .+..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~spdg-----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DV-PGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-EC-SSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ec-CCCCceEEECCCC-----CEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence            34455789999999995 33  333333 34 5788999999999     778888776 999999997  444  3444


Q ss_pred             eeeccccEEEEEEecCCCEEEEEeC-CCeEEEEEcc---CCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEc
Q 019326          126 VKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLV---RGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQA  199 (343)
Q Consensus       126 ~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~  199 (343)
                      +..+. .+..++|+|+++++++++. ++.|.+||+.   ..+..........+..++|+|++++++++  .++.+.+||+
T Consensus        80 ~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           80 SALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             EECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            54433 7889999999998876665 8899999994   33444444555678889999999988777  6899999999


Q ss_pred             cc-ceeEE----Ee--cCCcceEEeeecC-CCeEE-EEeCCCcEEEEECCC--Cce--eEEec---ccc--cccEEEEEE
Q 019326          200 ED-AKLLC----EL--DGKKRILCAAPGE-NGVLF-TGGEDRSITAWDTNS--GKV--AYCIE---DAH--SARVKGIVV  261 (343)
Q Consensus       200 ~~-~~~~~----~~--~~~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~~--~~~--~~~~~---~~h--~~~v~~~~~  261 (343)
                      .+ ++...    .+  .....+..++|++ +++++ ++..++.|.+||+..  ++.  ...+.   .++  ...+..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 65432    12  2345778899985 45554 445889999999953  432  22222   111  235678999


Q ss_pred             EecCCCCCCCCCCeEEE-EEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc-CCCCCCCc
Q 019326          262 LTKNDGGSTAENPYLVA-SASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI-GDSAPKGE  335 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~-~~~~~~~~  335 (343)
                      +|++.         +|+ +...|+.|.+||+..... ....+........+.++++++++++++... .++.+..+
T Consensus       239 s~dg~---------~l~v~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          239 TPDGR---------HLYACDRTASLITVFSVSEDGS-VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             CTTSS---------EEEEEETTTTEEEEEEECTTSC-CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCCCC---------EEEEEecCCCEEEEEEEcCCCC-ceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEE
Confidence            98876         665 666899999999983110 111222333334588999999999776666 45544443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=3.8e-22  Score=167.91  Aligned_cols=265  Identities=12%  Similarity=0.117  Sum_probs=183.1

Q ss_pred             eeEEec----cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC---CCeEEEEEcCCC
Q 019326            2 SLIAGS----YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT---DDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~~   72 (343)
                      +|++|+    .++.|++|++...        ..+...+... .+...+..++|+  ++ |++++.   ++.|++|++.++
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~--------tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g   73 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTT--------AKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ   73 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETT--------TTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEeccCCCCCCEEEEEEcCC--------CCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC
Confidence            355664    3567999988751        1122332222 345677889998  56 665554   689999999877


Q ss_pred             e--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECCC-c--ceeeeeeec---------cccEEEEE
Q 019326           73 S--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDADP-F--VLLTSVKVH---------KKGVNDLA  137 (343)
Q Consensus        73 ~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~--~~~~~~~~~---------~~~v~~i~  137 (343)
                      +  .+..+..+ ...+..++|+|++     ++|++++ .++.|.+|++.. +  +.+..+...         ...+.+++
T Consensus        74 ~~~~~~~~~~~-~~~p~~~a~spdg-----~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~  147 (347)
T 3hfq_A           74 TAHKLNTVVAP-GTPPAYVAVDEAR-----QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD  147 (347)
T ss_dssp             EEEEEEEEEEE-SCCCSEEEEETTT-----TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred             cEEEeeeeecC-CCCCEEEEECCCC-----CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence            5  44444455 6788899999999     7777777 689999999952 2  233333211         12488899


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcc-CCceeEEE--Ec--CCcceEEEEeCCCCEEEEE--eCCcEEEEEccc--cee--EE
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLV-RGRRSFYH--KI--GKEASLIKFDGSGEKFFMV--TEEKVGIHQAED--AKL--LC  206 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~--~~~--~~  206 (343)
                      |+|+++++++...++.|.+|++. +++.....  ..  ...+..++|+|++++++++  .++.+.+|++..  ++.  ..
T Consensus       148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence            99999966666678999999998 45433222  22  2357789999999977765  678999999874  443  22


Q ss_pred             Eec-CC------cceEEeeecC-CCeE-EEEeCCCcEEEEECCC---CceeEEecccccccEEEEEEEecCCCCCCCCCC
Q 019326          207 ELD-GK------KRILCAAPGE-NGVL-FTGGEDRSITAWDTNS---GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       207 ~~~-~~------~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  274 (343)
                      .+. ..      ..+..++|++ +++| +++..++.|.+|++..   .+.+..+. .+...+..++|+|++.        
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~--------  298 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEA--------  298 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSS--------
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCC--------
Confidence            222 11      4588899985 5556 5566689999999973   24555565 5666789999999887        


Q ss_pred             eEEEEEcC-CCcEEEEecc
Q 019326          275 YLVASASS-DGVICVWDVR  292 (343)
Q Consensus       275 ~~l~s~~~-dg~i~vwd~~  292 (343)
                       +|++++. ++.|.+|+++
T Consensus       299 -~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          299 -FVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             -EEEEEETTTTEEEEEEEC
T ss_pred             -EEEEEEcCCCcEEEEEEe
Confidence             7877765 4899999654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=8.5e-23  Score=171.83  Aligned_cols=228  Identities=9%  Similarity=0.081  Sum_probs=176.1

Q ss_pred             EEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceee
Q 019326           48 VAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLT  124 (343)
Q Consensus        48 l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~  124 (343)
                      +++.  +.++++++.++.|++||+.+++.+..+..+....+..++|+|++     +++ +++..++.|.+||+.+++.+.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-----SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC-----CEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            3444  67888999999999999999998888876522368899999998     544 566678999999999988877


Q ss_pred             eeeecc------ccEEEEEEecCCCEEEEEeCC------------CeEEEEEccCCc---eeEEEEcCCcceEEEEeCCC
Q 019326          125 SVKVHK------KGVNDLAVHHSGKLALTVGRD------------DCLAMVNLVRGR---RSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       125 ~~~~~~------~~v~~i~~~~~~~~l~~~~~d------------~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~  183 (343)
                      .+..+.      ..+..++|+|+++++++++.+            +.|.+||+.+++   .......+..+.+++|+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            776332      237889999999999998865            899999998844   33445556678889999999


Q ss_pred             CEEEEEeCCcEEEEEcccceeEEEecCCc---------------------------------------------------
Q 019326          184 EKFFMVTEEKVGIHQAEDAKLLCELDGKK---------------------------------------------------  212 (343)
Q Consensus       184 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------------------------------------------  212 (343)
                      + ++++ ++.+.+||..+++....+....                                                   
T Consensus       160 ~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  237 (349)
T 1jmx_B          160 S-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  237 (349)
T ss_dssp             C-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             c-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence            9 5554 4459999999988777665221                                                   


Q ss_pred             ------------------ceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCC
Q 019326          213 ------------------RILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       213 ------------------~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                                        .+..+++++  +++++++  ++.|.+||+.+++.+..+.  ....+.+++|++++.      
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~------  307 (349)
T 1jmx_B          238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGD------  307 (349)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSS------
T ss_pred             EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCC------
Confidence                              123344444  4567666  8899999999999888877  344578999999876      


Q ss_pred             CCeEEEEEcCCCcEEEEeccCcc
Q 019326          273 NPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                         +|++++.++.|++||+++++
T Consensus       308 ---~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          308 ---KLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             ---CEEEESBSSEEEEEETTTTE
T ss_pred             ---EEEEecCCCeEEEEeccccc
Confidence               78888889999999998865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=4.2e-23  Score=197.38  Aligned_cols=269  Identities=11%  Similarity=0.006  Sum_probs=208.0

Q ss_pred             ecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCC-CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           38 YPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLST-SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        38 ~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      +.+|...+.++.|+ ..++++++.|+.+++|.+.. +.....+..+  ..+...+|+|++     +.|+.+ .++.|++|
T Consensus       199 l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~--~~~~~~~~SpDG-----~~la~~-~~~~i~~~  270 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF--TDYYPRHLNTDG-----RRILFS-KGGSIYIF  270 (1045)
T ss_dssp             EECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCC--CSSCEEEEEESS-----SCEEEE-ETTEEEEE
T ss_pred             CcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCC--CCcceeeEcCCC-----CEEEEE-eCCEEEEe
Confidence            36899999999999 44556777889999998764 4455566656  356778999999     677776 58999999


Q ss_pred             ECCCcceeeeeee-----------ccccEEEEEEe-cCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC-cceEEEEeCC
Q 019326          116 DADPFVLLTSVKV-----------HKKGVNDLAVH-HSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK-EASLIKFDGS  182 (343)
Q Consensus       116 d~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~  182 (343)
                      |+...+ +..+..           |...+.+++|+ |+|+.|++++ ++.+.+|++..++......... .+..++|+ +
T Consensus       271 d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          271 NPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             CTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             cCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            995433 334443           34578999999 9999998887 7899999998877554434445 67889999 9


Q ss_pred             CCEEEEE-eCCcEE-EEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEE
Q 019326          183 GEKFFMV-TEEKVG-IHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI  259 (343)
Q Consensus       183 ~~~~~~~-~~~~i~-~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~  259 (343)
                      ++.++.+ .+..+. +|++.+++......+...+..++|+ ++++|++++.++.|++||+.+++....+. .|...+.++
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~  426 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDF  426 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCE
T ss_pred             CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccce
Confidence            9988888 566777 8898877655444466789999999 46789999999999999999998877776 788999999


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCC----------cEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCC
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDG----------VICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                      +|+|++.         +|++++.++          .|++||+.++...   .+  ..+...+..++|+|++++++....+
T Consensus       427 ~~SpDG~---------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~---~l--~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          427 TISDNSR---------FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF---AA--TTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             EECTTSC---------EEEEEEEECSSTTCSCCEEEEEEEETTTTEEE---EC--SCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             EECCCCC---------eEEEEecCccccccCCCCCeEEEEECCCCcEE---Ee--eCCCcccCCceEcCCCCEEEEEecc
Confidence            9999987         888887654          8999999876411   11  1234457889999999998887765


Q ss_pred             CCC
Q 019326          330 SAP  332 (343)
Q Consensus       330 ~~~  332 (343)
                      +..
T Consensus       493 ~~~  495 (1045)
T 1k32_A          493 SLD  495 (1045)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=7.1e-21  Score=161.05  Aligned_cols=284  Identities=12%  Similarity=0.172  Sum_probs=188.7

Q ss_pred             eeEEecc----CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC----CeEEEEEcCC
Q 019326            2 SLIAGSY----EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD----DTIHLYDLST   71 (343)
Q Consensus         2 ~l~~g~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d----g~i~iwd~~~   71 (343)
                      .+++|++    ++.|++|.+...        ..+...+...  +...+..++|+  +++|++++.+    +.|.+|+++.
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~--------~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~   84 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEE--------TGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK   84 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETT--------TCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred             EEEEEeccCCCCCCEEEEEEeCC--------CCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence            4566654    568999998752        1223444443  66778889998  7888888876    7999999875


Q ss_pred             --Ce--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECCCcceeeeee---ec-----------ccc
Q 019326           72 --SS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDADPFVLLTSVK---VH-----------KKG  132 (343)
Q Consensus        72 --~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~---~~-----------~~~  132 (343)
                        ++  .+.....+ ......+++  ++     ++|++++ .++.|.+|++.....+..+.   .+           ...
T Consensus        85 ~~g~~~~~~~~~~~-~~~p~~~~~--dg-----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~  156 (361)
T 3scy_A           85 EKGTLHLLNTQKTM-GADPCYLTT--NG-----KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH  156 (361)
T ss_dssp             TTTEEEEEEEEECS-SSCEEEEEE--CS-----SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred             CCCcEEEeeEeccC-CCCcEEEEE--CC-----CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence              43  33344434 456777887  55     4566555 68899999996543322211   11           224


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEEccCCce------e--------EEEEcCCcceEEEEeCCCCEEEEE--eCCcEE
Q 019326          133 VNDLAVHHSGKLALTVG-RDDCLAMVNLVRGRR------S--------FYHKIGKEASLIKFDGSGEKFFMV--TEEKVG  195 (343)
Q Consensus       133 v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~  195 (343)
                      +.+++|+|+++++++++ .++.|.+|++.....      +        ........+..++|+|++++++++  .++.|.
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  236 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI  236 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence            57899999999766655 489999999875442      1        122234557789999999988777  589999


Q ss_pred             EEEccccee--EEEec----CCcceEEeeecC-CCeEEEEeC--CCcEEEEECC--CCc--eeEEecccccccEEEEEEE
Q 019326          196 IHQAEDAKL--LCELD----GKKRILCAAPGE-NGVLFTGGE--DRSITAWDTN--SGK--VAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       196 ~~d~~~~~~--~~~~~----~~~~i~~~~~~~-~~~l~~~~~--dg~i~i~d~~--~~~--~~~~~~~~h~~~v~~~~~~  262 (343)
                      +|++.+++.  +..+.    +......++|++ +++|+++..  ++.|.+|++.  +++  .+..+. . ...+.+++|+
T Consensus       237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~s  314 (361)
T 3scy_A          237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIIT  314 (361)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEEC
T ss_pred             EEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEEC
Confidence            999987654  23332    224467899984 567766555  4899999985  444  444454 3 5678899999


Q ss_pred             ecCCCCCCCCCCeEEEEEc-CCCcEEEEecc--CccccCCCcccccccccceeEEEcC
Q 019326          263 TKNDGGSTAENPYLVASAS-SDGVICVWDVR--MAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                      |++.         +|++++ .++.|.+|+++  ++....   +........+.|+.|.
T Consensus       315 pdg~---------~l~~~~~~~~~v~v~~~d~~~g~~~~---~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          315 PNGK---------YLLVACRDTNVIQIFERDQATGLLTD---IKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTSC---------EEEEEETTTTEEEEEEECTTTCCEEE---CSCCEECSSEEEEEEE
T ss_pred             CCCC---------EEEEEECCCCCEEEEEEECCCCcEee---cceeeeCCCCeEEEEc
Confidence            9887         787776 67999997665  442211   1111122358888875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1e-21  Score=180.81  Aligned_cols=257  Identities=9%  Similarity=0.042  Sum_probs=187.4

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCC-----CeeeeEec
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLST-----SSSLGAIH   79 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~   79 (343)
                      +.++.|++||+.+       ++      ...+..+...+.+++|+  |+.|+++ .++.|++||+.+     ++......
T Consensus        98 ~~~~~i~~~d~~~-------~~------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A           98 FTQGGLVGFDMLA-------RK------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             EETTEEEEEETTT-------TE------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred             EECCEEEEEECCC-------Cc------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence            3569999999876       21      12233567778889999  7888885 689999999998     77665444


Q ss_pred             cCCCCC--------------eEEEEEeCCCCCCCCceEEEee---------------------------------CCCeE
Q 019326           80 HHESSS--------------VTSLAFYTPQNLSVPRNLFSTS---------------------------------ADGFV  112 (343)
Q Consensus        80 ~~~~~~--------------v~~l~~~~~~~~~~~~~l~s~~---------------------------------~dg~i  112 (343)
                      .+ ...              +.++.|+|++     ++|++++                                 .+..|
T Consensus       164 ~~-~~~~~~g~~~~~ee~~~~~~~~~SpDg-----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          164 DG-TETLVYGQAVHQREFGIEKGTFWSPKG-----SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CC-BTTEEESSCCGGGCTTCCCSEEECTTS-----SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             CC-CCCeEcccchhhhhcCCCceEEECCCC-----CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            44 232              4899999999     7888887                                 44689


Q ss_pred             EEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCc-eeEEEEc--CC---cceEEEE
Q 019326          113 SIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDD-----CLAMVNLVRGR-RSFYHKI--GK---EASLIKF  179 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~wd~~~~~-~~~~~~~--~~---~~~~~~~  179 (343)
                      ++||+.+++......  .|...+.+++|+|+++.|++++.++     .|.+||+.+++ .......  ..   .+..+.|
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            999999877554432  4667899999999999999988775     89999999983 3222222  21   2356899


Q ss_pred             eC--CCCEEEEE-eCCcEEEEEcc-cceeEEEec-CCcceEE-eeecC-CCeEE-EEeCCC----cEEEEECCCCceeEE
Q 019326          180 DG--SGEKFFMV-TEEKVGIHQAE-DAKLLCELD-GKKRILC-AAPGE-NGVLF-TGGEDR----SITAWDTNSGKVAYC  247 (343)
Q Consensus       180 ~~--~~~~~~~~-~~~~i~~~d~~-~~~~~~~~~-~~~~i~~-~~~~~-~~~l~-~~~~dg----~i~i~d~~~~~~~~~  247 (343)
                      +|  ++++++++ .++.+.+|.+. +++.+..+. +...+.. +.|++ ++.|+ +++.++    .|..||..+++ ...
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~  396 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD  396 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee
Confidence            99  99988888 77888888876 566666665 5556765 78884 45554 455554    67777887765 455


Q ss_pred             ecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC----CcEEEEeccCcc
Q 019326          248 IEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD----GVICVWDVRMAI  295 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~  295 (343)
                      +.  |...+.+++|+|++.         +++..+.+    +.|++||+.++.
T Consensus       397 l~--~~~~~~~~~~spdg~---------~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          397 LT--PESGMHRTQLSPDGS---------AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SC--CSSSEEEEEECTTSS---------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cc--CCCceEEEEECCCCC---------EEEEEecCCCCCcEEEEEECCCCe
Confidence            55  677899999999887         77765433    569999998763

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=1.5e-22  Score=186.86  Aligned_cols=267  Identities=11%  Similarity=-0.013  Sum_probs=188.3

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC---CeEEEEEeCCCCCCCCceEEEeeCC--------
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESS---SVTSLAFYTPQNLSVPRNLFSTSAD--------  109 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~l~s~~~d--------  109 (343)
                      ..+.+++|+  |+++++ +.||.|++||+.+++....+..+ ..   .|.+++|+|++     ++|++++.+        
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~-~~~~~~v~~~~~SpDg-----~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-KIESLRAIRYEISPDR-----EYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-TTTTTTCSEEEECTTS-----SEEEEEESCCCCSSSCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc-cccccccceEEECCCC-----CEEEEEecCccceeecc
Confidence            346778898  666655 78999999999999888777766 43   49999999999     788888764        


Q ss_pred             -CeEEEEECCCcceeeeee---eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCc-----------
Q 019326          110 -GFVSIFDADPFVLLTSVK---VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKE-----------  173 (343)
Q Consensus       110 -g~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~-----------  173 (343)
                       +.+++||+.+++. ..+.   .|...+..++|+|+|+.|+.++. +.|++||+.+++....... ...           
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             eeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence             7888999988775 3333   34445889999999999999886 7999999998876554433 222           


Q ss_pred             -------ceEEEEeCCCCEEEEE-eCC----------------------------------cEEEEEcccceeEEEecC-
Q 019326          174 -------ASLIKFDGSGEKFFMV-TEE----------------------------------KVGIHQAEDAKLLCELDG-  210 (343)
Q Consensus       174 -------~~~~~~~~~~~~~~~~-~~~----------------------------------~i~~~d~~~~~~~~~~~~-  210 (343)
                             +..++|+|+|+.|+.+ .++                                  .+.+||+.+++....+.. 
T Consensus       168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~  247 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (723)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence                   2789999999999888 332                                  789999998876555542 


Q ss_pred             ------CcceEEeeecCC-CeEEEEeC----CCcEEEEECCCCceeEEecccccccEE----EEEEEecCCCCCCCCCCe
Q 019326          211 ------KKRILCAAPGEN-GVLFTGGE----DRSITAWDTNSGKVAYCIEDAHSARVK----GIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       211 ------~~~i~~~~~~~~-~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~~~~~~~~~  275 (343)
                            ...+..+.|+++ +++++...    +..|++||+.+++....+...+...+.    .++|+|+++         
T Consensus       248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~---------  318 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR---------  318 (723)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC---------
T ss_pred             ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC---------
Confidence                  567889999954 56655532    357999999999877665523444443    778888876         


Q ss_pred             EEEE--EcCCC------cEEEEec-cCccccCCCcccccccccceeE-EEcCCCCceeccccCC
Q 019326          276 LVAS--ASSDG------VICVWDV-RMAIKEKPLPLAEAKTNSRLTC-LAGSSTKSFKRPQIGD  329 (343)
Q Consensus       276 ~l~s--~~~dg------~i~vwd~-~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~~~~~~~~  329 (343)
                      .|+.  +..|+      .|.+||+ ..+.......+..  ....+.. ++|+|+++.++....+
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESS
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcC
Confidence            5553  55677      4666663 3322000122211  1223443 6899999988654443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=1.5e-20  Score=159.22  Aligned_cols=269  Identities=10%  Similarity=0.141  Sum_probs=184.2

Q ss_pred             eeEEeccC--CeEEEEEeecCCCCCCCCcceeeEEeEEec-CCCCCeEEEEec--CceEEEeeCCCeEEEEEcC-CCeee
Q 019326            2 SLIAGSYE--KFIWGYKLKPSNHYSSDQKTLTLTQLFSYP-AHLSPITTVAVS--GTAAASGGTDDTIHLYDLS-TSSSL   75 (343)
Q Consensus         2 ~l~~g~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~-~~~~~   75 (343)
                      .|++|++.  +.|.+|++...        ..+...+.... ++...+..++|+  +++|++++.+ .|.+|++. +++..
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~--------~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~   74 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDE--------KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV   74 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETT--------TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE
T ss_pred             EEEEEEccCCCcEEEEEEECC--------CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE
Confidence            57778774  57999887641        11223232221 234567889998  7889988888 99999997 77765


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCce--EEEee-------------CCCeEEEEECC-Ccceeeeeee----ccccEEE
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRN--LFSTS-------------ADGFVSIFDAD-PFVLLTSVKV----HKKGVND  135 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~--l~s~~-------------~dg~i~iwd~~-~~~~~~~~~~----~~~~v~~  135 (343)
                      ........+.+.+++|+|++     ++  ++++.             .+|.+.+|++. .++....+..    +...+.+
T Consensus        75 ~~~~~~~~g~~~~~~~spdg-----~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  149 (365)
T 1jof_A           75 HEASHPIGGHPRANDADTNT-----RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG  149 (365)
T ss_dssp             EEEEEECCSSGGGGCTTSCC-----EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred             EeeEeecCCCCccEEECCCC-----CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceE
Confidence            43321101335668999998     63  44553             68999999997 4555444432    4567899


Q ss_pred             EEEecCCCEEEEEeC-CCeEEEEEcc-CCceeEE--EEc---CCcceEEEEeCCCCEEEEE--eCCcEEEEEcc--ccee
Q 019326          136 LAVHHSGKLALTVGR-DDCLAMVNLV-RGRRSFY--HKI---GKEASLIKFDGSGEKFFMV--TEEKVGIHQAE--DAKL  204 (343)
Q Consensus       136 i~~~~~~~~l~~~~~-d~~i~~wd~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~--~~~~  204 (343)
                      ++|+|+|++++++.. ++.|.+||+. +++....  ...   ...+..++|+|++++++++  .++.+.+|++.  +++.
T Consensus       150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            999999998887664 6899999998 6764322  221   3558889999999998877  46889999765  4554


Q ss_pred             E---EEec---CC----c-------ceEEee-ecC-CCeEEEEeCC-C-----cEEEEECC-CCceeE---Eeccccccc
Q 019326          205 L---CELD---GK----K-------RILCAA-PGE-NGVLFTGGED-R-----SITAWDTN-SGKVAY---CIEDAHSAR  255 (343)
Q Consensus       205 ~---~~~~---~~----~-------~i~~~~-~~~-~~~l~~~~~d-g-----~i~i~d~~-~~~~~~---~~~~~h~~~  255 (343)
                      .   ..+.   ..    .       .+..++ +++ +++|+++..+ +     .|.+|++. +++...   ... .+...
T Consensus       230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~-~~~~~  308 (365)
T 1jof_A          230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-TPTSG  308 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-CSSCC
T ss_pred             EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee-cCCCC
Confidence            2   1222   11    1       478899 884 5677766543 2     89999996 565433   132 34556


Q ss_pred             EEEEEEEe---cCCCCCCCCCCeEEEEEcCC-CcEEEEeccCc
Q 019326          256 VKGIVVLT---KNDGGSTAENPYLVASASSD-GVICVWDVRMA  294 (343)
Q Consensus       256 v~~~~~~~---~~~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~  294 (343)
                      +..++|+|   ++.         +|++++.+ +.|.+|+++..
T Consensus       309 ~~~~a~sp~~~dg~---------~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          309 GHSNAVSPCPWSDE---------WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCCCEEECTTCTT---------EEEEECSSSCEEEEEEEETT
T ss_pred             cccceecCCCcCCC---------EEEEEEcCCCeEEEEEEchh
Confidence            67889999   666         88888765 89999999764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.8e-21  Score=166.11  Aligned_cols=192  Identities=13%  Similarity=0.066  Sum_probs=142.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCC----CcceeeEEeEEecCCCCCeEEEEec--CceEE----EeeCCCeEEEEEcCCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSD----QKTLTLTQLFSYPAHLSPITTVAVS--GTAAA----SGGTDDTIHLYDLSTS   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~----s~~~dg~i~iwd~~~~   72 (343)
                      |++|+.++ +++|+..........    ...........+ .|...|++++|+  +++|+    +|+.|+.|++||+.++
T Consensus        51 l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~  128 (434)
T 2oit_A           51 VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF  128 (434)
T ss_dssp             EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred             EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence            56677676 889887542110000    011111122222 367889999999  88888    8899999999998765


Q ss_pred             --------ee---eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC
Q 019326           73 --------SS---LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS  141 (343)
Q Consensus        73 --------~~---~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  141 (343)
                              +.   +..+.+| ...|.+++|+|+.    +.+|++++.||+|++||++++..+....+|...|.+++|+|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~----~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd  203 (434)
T 2oit_A          129 SNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV----PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK  203 (434)
T ss_dssp             HCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC----TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTT
T ss_pred             ccCCcCCcceeeeeeccCCC-CCceEEEEECCCC----CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCC
Confidence                    22   3455667 8999999999983    179999999999999999988777777778999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeEEEEcC--------CcceEEEEeCCCCEEEEE--eCC------cEEEEEcccc
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRSFYHKIG--------KEASLIKFDGSGEKFFMV--TEE------KVGIHQAEDA  202 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~------~i~~~d~~~~  202 (343)
                      +++|++++.||.|++||++ ++........        ..+.+++|++++.++++.  .++      .+++|++++.
T Consensus       204 g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          204 GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999999999999998 4443333221        267889999988877665  332      2889999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=9.6e-22  Score=176.90  Aligned_cols=258  Identities=12%  Similarity=0.043  Sum_probs=187.2

Q ss_pred             CCCCeEEEEec--CceEEEeeC-CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEE
Q 019326           41 HLSPITTVAVS--GTAAASGGT-DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSI  114 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~i  114 (343)
                      +..+|.+++|+  |+.||+++. ||+++||++++++... +..++...+..++|+|+.      .+++++.   +....+
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~------~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGR------VILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSE------EEEEEECSTTSCCEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCe------EEEEeccCCCCcceEE
Confidence            35689999998  889998887 9999999997766544 444414689999999873      6777665   455566


Q ss_pred             EECCC---cceeeeeeeccccEEEEEEecCCCE-EEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-
Q 019326          115 FDADP---FVLLTSVKVHKKGVNDLAVHHSGKL-ALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       115 wd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      |.++.   +... .+.. ...+...+|+|+++. +++.+.++.+.+||+.+++.........  ..++|+|+|+.++.+ 
T Consensus        93 ~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEE
Confidence            55432   2222 3322 223446688888753 3344444555699999987665554444  889999999999977 


Q ss_pred             eC----CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCC--cEEEEECCCCceeEEecccccccEEEEE--
Q 019326          190 TE----EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDR--SITAWDTNSGKVAYCIEDAHSARVKGIV--  260 (343)
Q Consensus       190 ~~----~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~~~~--  260 (343)
                      .+    ..|++||+.+++......+...+..++|+ +++.|+++..++  .|++||+.+++.. .+. .|...+..++  
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~  246 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE-LPSKDFSSYRPT  246 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC-CSCSHHHHHCCS
T ss_pred             EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhc
Confidence            55    67999999988876555577888999999 467888888888  8999999988877 665 7777776666  


Q ss_pred             ------EEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          261 ------VLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       261 ------~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                            |+|++.         ++++++.||++++|++  ++...       .....+.+++++ ++++++....+.
T Consensus       247 ~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~-------~~~~~v~~~~~s-dg~~l~~~s~~~  303 (582)
T 3o4h_A          247 AITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE-------APQGNHGRVVLW-RGKLVTSHTSLS  303 (582)
T ss_dssp             EEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC-------CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             cccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec-------cCCCceEEEEec-CCEEEEEEcCCC
Confidence                  888875         9999999999999999  43222       112458889999 888877666554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=8.5e-21  Score=159.57  Aligned_cols=226  Identities=12%  Similarity=0.097  Sum_probs=171.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC-CCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL-SPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      .+++++.++.|++||..+       +     +....+..+. ..+..++|+  ++.+ +++..++.|.+||+.+++.+..
T Consensus        13 ~~v~~~~~~~v~~~d~~~-------~-----~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B           13 YMIVTNYPNNLHVVDVAS-------D-----TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             EEEEEETTTEEEEEETTT-------T-----EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCeEEEEECCC-------C-----cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            367888999999999876       2     2333333332 257788888  6554 4556789999999999988877


Q ss_pred             eccCC-----CCCeEEEEEeCCCCCCCCceEEEeeCC------------CeEEEEECCCccee---eeeeeccccEEEEE
Q 019326           78 IHHHE-----SSSVTSLAFYTPQNLSVPRNLFSTSAD------------GFVSIFDADPFVLL---TSVKVHKKGVNDLA  137 (343)
Q Consensus        78 ~~~~~-----~~~v~~l~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~v~~i~  137 (343)
                      +...+     ...+..++|+|++     +++++++.+            +.|.+||+.+++..   ..+. +...+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~  154 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDG-----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMR  154 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEE
T ss_pred             EEcccccccccccccceEECCCC-----CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccccee
Confidence            76441     1237889999999     788888865            89999999885433   3333 344688999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK---------------------------------------------  172 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------------------------------------  172 (343)
                      |+|+++ +++++.  .|.+||+.+++.........                                             
T Consensus       155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            999999 555544  49999998887655443321                                             


Q ss_pred             ------------------------cceEEEEeC-CCCEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEE
Q 019326          173 ------------------------EASLIKFDG-SGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLF  226 (343)
Q Consensus       173 ------------------------~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~  226 (343)
                                              .+..++++| ++++++++ ++.|.+||+.+++.+..+.....+.++++++ +++|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEE
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEE
Confidence                                    234566779 99999888 8899999999999988887666778899984 56788


Q ss_pred             EEeCCCcEEEEECCCCceeEEec
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      +++.++.|.+||..+++.+..+.
T Consensus       311 ~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          311 LGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EESBSSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCeEEEEeccccceeeeee
Confidence            88889999999999999888876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=6.4e-21  Score=182.41  Aligned_cols=279  Identities=10%  Similarity=-0.002  Sum_probs=208.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      +++++.++.+.+|.+....           .....+..|. .+..++|+  |+.|+++ .++.|.+|++... .+..+..
T Consensus       217 ~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~  282 (1045)
T 1k32_A          217 YFITDIDGFGQIYSTDLDG-----------KDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEI  282 (1045)
T ss_dssp             EEEECTTSSCEEEEEETTS-----------CSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCC
T ss_pred             EEEEeccCceEEEEEeCCC-----------CcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeeecc
Confidence            3456678889999886411           1122333444 35566777  7878877 4899999999544 3334444


Q ss_pred             C----------CCCCeEEEEEe-CCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEE
Q 019326           81 H----------ESSSVTSLAFY-TPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTV  148 (343)
Q Consensus        81 ~----------~~~~v~~l~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~  148 (343)
                      +          +...+.+++|+ |++     +.|++++ ++.|.+|+..+++.. .+..|.. .+..++|+ +++.|+.+
T Consensus       283 ~~~~~~~~~~~~~~~v~~~~~S~pdG-----~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          283 GDLESPEDRIISIPSKFAEDFSPLDG-----DLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             CCCCBCCSEEEECGGGGEEEEEECGG-----GCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred             CcccccccccccccccceeeecCCCC-----CEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEE
Confidence            2          03468999999 999     7788877 789999999876644 3556777 89999999 99999999


Q ss_pred             eCCCeEE-EEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe-cCCcceEEeeecC-CCe
Q 019326          149 GRDDCLA-MVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL-DGKKRILCAAPGE-NGV  224 (343)
Q Consensus       149 ~~d~~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~-~~~~~i~~~~~~~-~~~  224 (343)
                      +.++.+. +||+.+++..........+..++|+|+++.++++ .++.+++||+.+++..... .+...+.+++|++ +++
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~  434 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF  434 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence            9888898 9999887654444444678899999999999988 7889999999999888777 4777889999994 567


Q ss_pred             EEEEeCCC----------cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          225 LFTGGEDR----------SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       225 l~~~~~dg----------~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |++++.++          .|++||+.+++ +..+. .|...+..++|+|++.         +|++++.++...+|+....
T Consensus       435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~---------~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          435 IAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSK---------NLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSC---------EEEEEESCCCCCEECSSSS
T ss_pred             EEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCC---------EEEEEecccCCcCcchhcc
Confidence            77776544          89999999887 66676 7888899999999887         9999999999999987643


Q ss_pred             cccCCCcccccccccceeEEEcCCCCc
Q 019326          295 IKEKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       295 ~~~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                      ..       .+.....+..+.++++..
T Consensus       504 ~~-------~~~~~~~~~~~~~~~~~~  523 (1045)
T 1k32_A          504 NF-------SFEVVSKPFVIPLIPGSP  523 (1045)
T ss_dssp             CE-------ECCSCBEEEEEESSTTCC
T ss_pred             cc-------ccccCceeEEEEeCCCCC
Confidence            21       112233455566655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=8.8e-20  Score=153.44  Aligned_cols=255  Identities=12%  Similarity=0.083  Sum_probs=170.2

Q ss_pred             CCCeEEEEEcC--CCeeee-EeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---CCeEEEEECCCcc--eeeeeeeccc
Q 019326           60 TDDTIHLYDLS--TSSSLG-AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---DGFVSIFDADPFV--LLTSVKVHKK  131 (343)
Q Consensus        60 ~dg~i~iwd~~--~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~  131 (343)
                      .++.|.+|+++  +++... ....+ ...+..++|+|++     + |++++.   ++.|.+|++.+++  .+..+..+..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~-~~~p~~~a~spdg-----~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~   86 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAA-TQNPTYLALSAKD-----C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT   86 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEE-CSCCCCEEECTTC-----E-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeec-cCCcceEEEccCC-----e-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC
Confidence            35667777665  455433 22334 4677889999998     6 555554   6899999997655  4445555777


Q ss_pred             cEEEEEEecCCCEEEEEe-CCCeEEEEEccC-Cce--eEEEEcC----------CcceEEEEeCCCCEEEEE-eCCcEEE
Q 019326          132 GVNDLAVHHSGKLALTVG-RDDCLAMVNLVR-GRR--SFYHKIG----------KEASLIKFDGSGEKFFMV-TEEKVGI  196 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~i~~  196 (343)
                      .+..++|+|++++|++++ .++.+.+|++.. +..  +......          ..+..++|+|+++.+++. .++.+.+
T Consensus        87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~  166 (347)
T 3hfq_A           87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV  166 (347)
T ss_dssp             CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence            889999999999888887 689999999963 332  2222221          136789999999955555 6889999


Q ss_pred             EEcc-cceeEE--Eec--CCcceEEeeecC-CCeEEE-EeCCCcEEEEECCC--Cce--eEEeccccc------ccEEEE
Q 019326          197 HQAE-DAKLLC--ELD--GKKRILCAAPGE-NGVLFT-GGEDRSITAWDTNS--GKV--AYCIEDAHS------ARVKGI  259 (343)
Q Consensus       197 ~d~~-~~~~~~--~~~--~~~~i~~~~~~~-~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~h~------~~v~~~  259 (343)
                      |++. +++...  .+.  ....+..++|++ ++++++ +..++.|.+|++..  ++.  +..+. ...      ..+..+
T Consensus       167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i  245 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAI  245 (347)
T ss_dssp             EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEE
T ss_pred             EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeE
Confidence            9998 454332  222  334577889985 554554 56789999999874  442  22332 221      458899


Q ss_pred             EEEecCCCCCCCCCCeEE-EEEcCCCcEEEEeccCccccCCCccccccc-ccceeEEEcCCCCceeccccCC-CCCC
Q 019326          260 VVLTKNDGGSTAENPYLV-ASASSDGVICVWDVRMAIKEKPLPLAEAKT-NSRLTCLAGSSTKSFKRPQIGD-SAPK  333 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~~~~~~~~-~~~~  333 (343)
                      +|+|++.         +| ++...++.|.+|++....  ....+..... ...+..++|+|++++++....+ +...
T Consensus       246 ~~spdG~---------~l~v~~~~~~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          246 RLSHDGH---------FLYVSNRGYNTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             EECTTSC---------EEEEEEETTTEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             EECCCCC---------EEEEEeCCCCEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            9999887         66 566678999999997431  1112222222 3457899999999977665543 4333

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=4.7e-21  Score=165.53  Aligned_cols=193  Identities=12%  Similarity=0.054  Sum_probs=145.6

Q ss_pred             CCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe----------eeeE-----eccCCCCCeEEEEEeCCCCCCCCceEE
Q 019326           42 LSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS----------SLGA-----IHHHESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      ...++.++++  +.++++++.++ +++|+.....          .+..     ...+ ...|.+++|+|++     ++|+
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg-----~~la  108 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM-KFPIHHLALSCDN-----LTLS  108 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC-SSCEEEEEECTTS-----CEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC-CCcccEEEEcCCC-----CEEE
Confidence            3457788887  78899998888 8998764211          0110     1123 5679999999999     7888


Q ss_pred             ----EeeCCCeEEEEECCCc--------ce---eeeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEEccCCceeEE-
Q 019326          105 ----STSADGFVSIFDADPF--------VL---LTSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVNLVRGRRSFY-  167 (343)
Q Consensus       105 ----s~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~-  167 (343)
                          +|+.|+.|++||+.+.        +.   +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..... 
T Consensus       109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence                7889999999998654        22   3455679999999999998 78999999999999999998865433 


Q ss_pred             EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec--------CCcceEEeeecCCCeEEE--EeCCC----
Q 019326          168 HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD--------GKKRILCAAPGENGVLFT--GGEDR----  232 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--------~~~~i~~~~~~~~~~l~~--~~~dg----  232 (343)
                      ..+...+.+++|+|++++++++ .|+.|++||.+ ++....+.        |...+.++.|+++..+++  +..+|    
T Consensus       189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            2345789999999999999999 89999999998 55555443        123789999986554442  33343    


Q ss_pred             --cEEEEECCCC
Q 019326          233 --SITAWDTNSG  242 (343)
Q Consensus       233 --~i~i~d~~~~  242 (343)
                        .+++|++++.
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence              3899999865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.7e-20  Score=167.51  Aligned_cols=253  Identities=12%  Similarity=0.079  Sum_probs=178.5

Q ss_pred             eeEEecc-CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC-CCeEEEEec-CceEEEeeC---CCeEEEEEcCC--Ce
Q 019326            2 SLIAGSY-EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL-SPITTVAVS-GTAAASGGT---DDTIHLYDLST--SS   73 (343)
Q Consensus         2 ~l~~g~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~-~~~l~s~~~---dg~i~iwd~~~--~~   73 (343)
                      +|+.++. ||.++||++..       +     . ...+..|. ..+.+++|+ .+.+++++.   +...++|.+..  ..
T Consensus        35 ~la~~s~~~g~~~lw~~~~-------g-----~-~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g  101 (582)
T 3o4h_A           35 KLLVVGFSEGSVNAYLYDG-------G-----E-TVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG  101 (582)
T ss_dssp             EEEEEEEETTEEEEEEEET-------T-----E-EEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             eEEEEEccCCceeEEEEcC-------C-----C-cEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCC
Confidence            4666666 99999999865       1     1 22333454 689999999 555665554   45566665543  22


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC--
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD--  151 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--  151 (343)
                      ....+...  ..+...+|+|+++    ..+++.+.++.+.+||+.+++.......+ .  .+++|+|||+.|++++.+  
T Consensus       102 ~~~~l~~~--~~~~~~~~s~dg~----~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A          102 EEQRLEAV--KPMRILSGVDTGE----AVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             CCEECTTS--CSBEEEEEEECSS----CEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEET
T ss_pred             ccccccCC--CCceeeeeCCCCC----eEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCC
Confidence            22244333  3455678888872    34444444455569999888765554433 3  789999999999988877  


Q ss_pred             --CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCC--cEEEEEcccceeEEEec-CCcceEEee-------
Q 019326          152 --DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEE--KVGIHQAEDAKLLCELD-GKKRILCAA-------  218 (343)
Q Consensus       152 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~d~~~~~~~~~~~-~~~~i~~~~-------  218 (343)
                        +.|++||+.+++..........+..++|+|+|+.++++ .++  .|.+||+.+++.. .+. +...+..+.       
T Consensus       173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence              78999999988876555566778899999999999977 667  8999999998877 444 445555556       


Q ss_pred             -ecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC---cEEEEeccC
Q 019326          219 -PGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG---VICVWDVRM  293 (343)
Q Consensus       219 -~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~  293 (343)
                       |++ +.++++++.++.+++|++  ++...    .+...+.+++|+ ++.         ++++++.+.   .+.+||...
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~---------~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE----APQGNHGRVVLW-RGK---------LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTE---------EEEEEEETTEEEEEEEETTCC
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec----cCCCceEEEEec-CCE---------EEEEEcCCCCCCeEEEEcCCC
Confidence             884 567888999999999999  65443    244678899998 665         888887774   467777654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=5.6e-21  Score=176.18  Aligned_cols=291  Identities=9%  Similarity=-0.017  Sum_probs=191.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCC---CeEEEEec--CceEEEeeC---------CCeEEEEE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLS---PITTVAVS--GTAAASGGT---------DDTIHLYD   68 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~~~---------dg~i~iwd   68 (343)
                      ++..+.|+.|++||+.+       ++     ....+.+|..   .+.+++|+  |++|++++.         ++.|++||
T Consensus        29 ~~~~~~d~~i~~~~~~~-------g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           29 YLHQSADNNIVLYNIET-------GQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             EEEECTTSCEEEEESSS-------CC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEcCC-------Cc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            55566799999999987       22     2222333333   48899999  888988876         78999999


Q ss_pred             cCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-eeccccE--------------
Q 019326           69 LSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-KVHKKGV--------------  133 (343)
Q Consensus        69 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v--------------  133 (343)
                      +.+++.+.... . ...+..++|+|++     +.|+.+. ++.|++||+.+++..... .++...|              
T Consensus        97 ~~~g~~~~~~~-l-~~~~~~~~~SPDG-----~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           97 LSNGEFVRGNE-L-PRPIQYLCWSPVG-----SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             TTTTEECCSSC-C-CSSBCCEEECSST-----TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred             CCCCcccccee-c-CcccccceECCCC-----CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecc
Confidence            99987632111 1 2568889999999     7888775 789999999887765432 2222222              


Q ss_pred             ---EEEEEecCCCEEEEEeCCC----------------------------------eEEEEEccCCcee--EEE------
Q 019326          134 ---NDLAVHHSGKLALTVGRDD----------------------------------CLAMVNLVRGRRS--FYH------  168 (343)
Q Consensus       134 ---~~i~~~~~~~~l~~~~~d~----------------------------------~i~~wd~~~~~~~--~~~------  168 (343)
                         .+++|+|||+.|++++.|.                                  .|++||+.+++..  ...      
T Consensus       169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  248 (719)
T 1z68_A          169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI  248 (719)
T ss_dssp             CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred             cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence               4899999999999988652                                  7889999887642  111      


Q ss_pred             -EcCCcceEEEEeCCCCEEEEE-eCC----cEEEEE----cccceeEEEe-----cCCcceE-----EeeecC-CCeEE-
Q 019326          169 -KIGKEASLIKFDGSGEKFFMV-TEE----KVGIHQ----AEDAKLLCEL-----DGKKRIL-----CAAPGE-NGVLF-  226 (343)
Q Consensus       169 -~~~~~~~~~~~~~~~~~~~~~-~~~----~i~~~d----~~~~~~~~~~-----~~~~~i~-----~~~~~~-~~~l~-  226 (343)
                       .....+..++|+|+++.+++. ...    .|.+||    ..+++....+     .+...+.     .+.|++ ++.++ 
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence             123457889999998777665 322    488899    7777655444     2444454     677874 45443 


Q ss_pred             -EEeCCC--cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC-----CCcEEEEeccCccc-c
Q 019326          227 -TGGEDR--SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS-----DGVICVWDVRMAIK-E  297 (343)
Q Consensus       227 -~~~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~-~  297 (343)
                       ++..+|  .|.+||+.+++ ...+. .+...+..+.+. ++.         .|+..+.     ++..++|.+..... .
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~---------~i~~~~~~~~~~~~~~~l~~~~~~~g~~  396 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQD---------SLFYSSNEFEEYPGRRNIYRISIGSYPP  396 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSS---------EEEEEESCGGGCTTCBEEEEEECSSSSC
T ss_pred             EEEccCCceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCC---------EEEEEEecCCCCCceEEEEEEeCCCCCC
Confidence             344555  57777887766 55666 566667777777 554         5555444     48899998875211 0


Q ss_pred             CCCcccc-cc-cccceeEEEcCCCCceecc
Q 019326          298 KPLPLAE-AK-TNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       298 ~~~~~~~-~~-~~~~i~~~~~s~~~~~~~~  325 (343)
                      ....+.. .. ....+..+.|++++++++.
T Consensus       397 ~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          397 SKKCVTCHLRKERCQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             CEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred             CceeccCccCCCCCceEEEEECCCCCEEEE
Confidence            1111111 11 2234677888888876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=3.1e-18  Score=144.78  Aligned_cols=247  Identities=10%  Similarity=0.120  Sum_probs=166.6

Q ss_pred             eEEeccC----CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEee-CCCeEEEEEcCCCeeeeE
Q 019326            3 LIAGSYE----KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGG-TDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         3 l~~g~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~   77 (343)
                      |++++.+    +.|.+|++...        ....+.+.....+......+++++++|++++ .++.|.+|++.....+..
T Consensus        64 l~~~~~~~~~~~~v~~~~~~~~--------~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~  135 (361)
T 3scy_A           64 VYSVNEFSKDQAAVSAFAFDKE--------KGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLP  135 (361)
T ss_dssp             EEEEECCSSTTCEEEEEEEETT--------TTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCS
T ss_pred             EEEEEccCCCCCcEEEEEEeCC--------CCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcc
Confidence            5666664    79999999751        1124455555556667788888877777666 588999999975433321


Q ss_pred             e------ccC-------CCCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECCCcce------e------eee-eecc
Q 019326           78 I------HHH-------ESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDADPFVL------L------TSV-KVHK  130 (343)
Q Consensus        78 ~------~~~-------~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~------~~~-~~~~  130 (343)
                      +      .+.       ....+.+++|+|++     +++++++ .++.|.+|++.....      +      ... ..+.
T Consensus       136 ~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          136 ASDVIEFKGSGPDKERQTMPHLHCVRITPDG-----KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             CSEEEECCCCCSCTTTCSSCCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             cceeEEccCCCCCccccCCCcceEEEECCCC-----CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence            1      110       02345889999999     6555544 588999999865331      1      111 2234


Q ss_pred             ccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeEEEEcC------CcceEEEEeCCCCEEEEE--e-CCcEEEEEcc
Q 019326          131 KGVNDLAVHHSGKLALTVG-RDDCLAMVNLVRGRRSFYHKIG------KEASLIKFDGSGEKFFMV--T-EEKVGIHQAE  200 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~-~~~i~~~d~~  200 (343)
                      ..+..++|+|+++++++++ .++.|.+||+.+++........      ..+..++|+|++++++++  . ++.+.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            5678999999999887777 6899999999977543322221      235689999999998777  3 5789999986


Q ss_pred             --cce--eEEEecCCcceEEeeecC-CCeEEEEe-CCCcEEEE--ECCCCceeEEecccccccEEEEEEE
Q 019326          201 --DAK--LLCELDGKKRILCAAPGE-NGVLFTGG-EDRSITAW--DTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       201 --~~~--~~~~~~~~~~i~~~~~~~-~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                        +++  .+..+.....+..++|++ +++|++++ .++.|.+|  |..+++........+...+.++.|.
T Consensus       291 ~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          291 ETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence              344  344444445677899984 56677776 67899996  5556765544332455678888875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=6.4e-19  Score=150.43  Aligned_cols=276  Identities=10%  Similarity=0.008  Sum_probs=188.1

Q ss_pred             EeEEecCCCCCeEE-----EEec--CceEEEeeC-CC--eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE
Q 019326           34 QLFSYPAHLSPITT-----VAVS--GTAAASGGT-DD--TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL  103 (343)
Q Consensus        34 ~~~~~~~h~~~v~~-----l~~~--~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l  103 (343)
                      ....+..|......     .+|+  |++|+.++. +|  .|.+||+.+++.......+ ...+..+.|+|++     +.|
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~spdg-----~~l   95 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR-GDNTFGGFLSPDD-----DAL   95 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS-CBCSSSCEECTTS-----SEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC-CCCccceEEcCCC-----CEE
Confidence            34555666665555     7788  888888877 66  4888899998877766666 5555577899999     799


Q ss_pred             EEeeCCCeEEEEECCCcceeeeeeeccccEEEEE--EecCCCEEEEE----------------------eCCCeEEEEEc
Q 019326          104 FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLA--VHHSGKLALTV----------------------GRDDCLAMVNL  159 (343)
Q Consensus       104 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~----------------------~~d~~i~~wd~  159 (343)
                      +.++.++.|++||+.+++....+..+...+....  ++|+++.++..                      ..+..|.+||+
T Consensus        96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  175 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL  175 (388)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred             EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence            9999999999999999887776666666554444  48899888743                      24578999999


Q ss_pred             cCCceeEEEEcCCcceEEEEeC-CCCEEEEE-e------CCcEEEEEcccceeEEEecCC--cceEEeeecC-CCeEEE-
Q 019326          160 VRGRRSFYHKIGKEASLIKFDG-SGEKFFMV-T------EEKVGIHQAEDAKLLCELDGK--KRILCAAPGE-NGVLFT-  227 (343)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~------~~~i~~~d~~~~~~~~~~~~~--~~i~~~~~~~-~~~l~~-  227 (343)
                      .+++..........+..+.|+| +++.++.. .      ...|.++|...++......+.  ..+....|++ ++.|+. 
T Consensus       176 ~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          176 KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence            9998777767777788999999 99988877 3      236888887765544333333  3577888984 555544 


Q ss_pred             EeCCC----cEEEEECCCCcee--EEeccccccc---EEEEEEEecCCCCCCCCCCeEEEEE---------cCCCcEEEE
Q 019326          228 GGEDR----SITAWDTNSGKVA--YCIEDAHSAR---VKGIVVLTKNDGGSTAENPYLVASA---------SSDGVICVW  289 (343)
Q Consensus       228 ~~~dg----~i~i~d~~~~~~~--~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~~~l~s~---------~~dg~i~vw  289 (343)
                      +..++    .|++||+.+++..  ..+. ++...   ...+.|+|++.         .|+..         ..+..|++|
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGS---------DAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEEC---------CC------------CCCCEEEEE
T ss_pred             ecCCCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCC---------cceeEeeeccccccCCCCEEEEE
Confidence            33322    3999999988743  3333 21111   12236788876         55543         556789999


Q ss_pred             eccCccccCCCccccccc---------ccceeEEEcCCCCceeccccC
Q 019326          290 DVRMAIKEKPLPLAEAKT---------NSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       290 d~~~~~~~~~~~~~~~~~---------~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      |+.++...   .+.....         ...+.+++|+||++.++....
T Consensus       326 d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          326 NMKNGTQH---RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             ETTTTEEE---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             eccCCceE---EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            99886421   1111110         114678899999988776554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=1.2e-17  Score=139.21  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=180.8

Q ss_pred             CCCCeEEEEec--CceEEEeeCC------------------------CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCC
Q 019326           41 HLSPITTVAVS--GTAAASGGTD------------------------DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTP   94 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~   94 (343)
                      -.+.+.+++++  |+++++...+                        +.|.+||..+++.+..+....-.....++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            35679999998  7777777666                        479999999898877665332568899999999


Q ss_pred             CCCCCCceEEEeeCCCeEEEEECCCcc-eeeeee---------eccccEEEEEEec-CCCEEEEEe-CCCeEEEEEccCC
Q 019326           95 QNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVK---------VHKKGVNDLAVHH-SGKLALTVG-RDDCLAMVNLVRG  162 (343)
Q Consensus        95 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~i~~~~-~~~~l~~~~-~d~~i~~wd~~~~  162 (343)
                      +     +++++...++.|++||..... .+..+.         .+......++++| ++.++++.+ .++.|++|| .++
T Consensus       102 g-----~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          102 G-----NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             S-----CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             C-----CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            8     788888889999999986542 444442         2334689999999 788888876 689999999 456


Q ss_pred             ceeEEEEcC-----------CcceEEEEeCC-CCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEE
Q 019326          163 RRSFYHKIG-----------KEASLIKFDGS-GEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLF  226 (343)
Q Consensus       163 ~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~  226 (343)
                      +.+......           ..+..++++|+ +..+++. .++.|++|+..+++.+..+.   +...+..++++++..+.
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~  255 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA  255 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEE
Confidence            655544321           23788999999 5555555 78899999999888888875   34567778877733333


Q ss_pred             EE-------eCCCcEEEEECCCCceeEEec--ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          227 TG-------GEDRSITAWDTNSGKVAYCIE--DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       227 ~~-------~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +.       ..+..|++||..+++.+..+.  .++...+.+|++++++.         ++++...+++|++|++..
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~---------lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT---------VYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE---------EEEEESSSCCEEEEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC---------EEEEECCCCEEEEEeCCc
Confidence            32       234589999999999988873  25677899999988875         889999999999999875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.85  E-value=6.1e-19  Score=148.76  Aligned_cols=275  Identities=13%  Similarity=0.069  Sum_probs=189.6

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeee
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSL   75 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~   75 (343)
                      .|+.|++||..+       +     +.+..+..+..+  .++|+  +++++++.          .++.|.+||..+++.+
T Consensus        29 ~d~~v~v~D~~t-------~-----~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~   94 (361)
T 2oiz_A           29 TESRVHVYDYTN-------G-----KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE   94 (361)
T ss_dssp             GGCEEEEEETTT-------C-----CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE
T ss_pred             ccCeEEEEECCC-------C-----eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE
Confidence            478999999776       2     223445555555  88998  78888876          3678999999999888


Q ss_pred             eEeccCC-----CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeee-eeeccccEEEEEEecCC-CEEE
Q 019326           76 GAIHHHE-----SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTS-VKVHKKGVNDLAVHHSG-KLAL  146 (343)
Q Consensus        76 ~~~~~~~-----~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~  146 (343)
                      ..+....     ......++++|++     ++|+++..  +++|.+||+.+++.+.. +.. . ....+.+.|++ ..++
T Consensus        95 ~~i~~~~~~~~~g~~p~~i~~spdg-----~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           95 KEISLPPKRVQGLNYDGLFRQTTDG-----KFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             EEEEECTTBCCBCCCGGGEEECTTS-----SEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEE
T ss_pred             EEEEcCccccccCCCcceEEECCCC-----CEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEE
Confidence            8775320     2456789999999     78888764  58999999999888776 542 2 22335677765 6788


Q ss_pred             EEeCCCeEEEEEccC-CceeEEEE------cCCcceEEEEeCCCCEEEEE-eCCcEEEEEccccee--EEEecC------
Q 019326          147 TVGRDDCLAMVNLVR-GRRSFYHK------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL--LCELDG------  210 (343)
Q Consensus       147 ~~~~d~~i~~wd~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~~~------  210 (343)
                      +.+.||.+.+|++.. ++......      .......+.+++++..++.. .++.+.++|+.....  ...+..      
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            889999999999875 44331211      11112223345666666655 778899999865432  222110      


Q ss_pred             -----CcceEEeeec-CCCeEEEEeC-----------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          211 -----KKRILCAAPG-ENGVLFTGGE-----------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       211 -----~~~i~~~~~~-~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                           ......++++ +++.++++..           .+.|.+||+.+++.+.++. .+.  +.+++|+|+++       
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~-------  317 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRN-------  317 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTT-------
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCC-------
Confidence                 0111124566 4465555432           3589999999999999998 555  89999999987       


Q ss_pred             CeEEEEEcCCCcEEEEeccCc--cccCCCccccc-ccccceeEEEcCCCCc
Q 019326          274 PYLVASASSDGVICVWDVRMA--IKEKPLPLAEA-KTNSRLTCLAGSSTKS  321 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~-~~~~~i~~~~~s~~~~  321 (343)
                        +|++++. +.|.+||..++  +     .+..+ ..+.....++++|+|.
T Consensus       318 --~l~v~n~-~~v~v~D~~t~~l~-----~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          318 --LMLTLDG-GNVNVYDISQPEPK-----LLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             --EEEEECS-SCEEEEECSSSSCE-----EEEEETTSCSSEEEEEECCCSC
T ss_pred             --EEEEeCC-CeEEEEECCCCcce-----eeEEeccCCCCcEEEEecCCCC
Confidence              8888886 99999999987  4     33332 4455678899999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=6.4e-17  Score=132.15  Aligned_cols=233  Identities=10%  Similarity=0.144  Sum_probs=170.7

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc------CCCCCeEEEEEe-CCCCCCCCceEEEeeC-C
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH------HESSSVTSLAFY-TPQNLSVPRNLFSTSA-D  109 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~~~-~~~~~~~~~~l~s~~~-d  109 (343)
                      +|...+.+++++  ++++++...++.|.+||.+ ++.+..+..      + ...+..+++. +++     .++++... +
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~-~~~p~~i~~~~~~g-----~l~v~~~~~~   99 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQ-LLYPNRVAVVRNSG-----DIIVTERSPT   99 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTC-BSSEEEEEEETTTT-----EEEEEECGGG
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCccc-ccCceEEEEEcCCC-----eEEEEcCCCC
Confidence            456779999998  6777777888999999987 666666542      2 3578899995 565     45555433 8


Q ss_pred             CeEEEEECCCcceeeeeee-ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc---CCcceEEEEeCCCCE
Q 019326          110 GFVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI---GKEASLIKFDGSGEK  185 (343)
Q Consensus       110 g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~  185 (343)
                      +.|.+|| .+++.+..+.. +...+..++++|+++++++...++.|.+||.. ++.......   ...+..++++++++.
T Consensus       100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            8999999 55566666542 33578999999999988887888999999964 454444432   245788999999987


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEecCC---cceEEeeecC-CCeEEEEeCCC-cEEEEECCCCceeEEeccccc--ccEE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELDGK---KRILCAAPGE-NGVLFTGGEDR-SITAWDTNSGKVAYCIEDAHS--ARVK  257 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~i~~~~~~~-~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~h~--~~v~  257 (343)
                      +++. .++.|.+|+. +++.+..+...   ..+..+++++ ++++++...++ .|.+||. +++.+..+. .+.  ..+.
T Consensus       178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~  254 (286)
T 1q7f_A          178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-SKVKHAQCF  254 (286)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-ESSCCSCEE
T ss_pred             EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-ccCCCCcce
Confidence            7776 6899999997 45566666532   5678899974 55666666665 9999995 477777776 333  3478


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ++++++++.         ++++ +.|++|++|++...
T Consensus       255 ~i~~~~~g~---------l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          255 DVALMDDGS---------VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEETTTE---------EEEE-ETTTEEEEEECSCC
T ss_pred             eEEECCCCc---------EEEE-CCCCeEEEEEcccc
Confidence            999998875         6666 57999999998653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.82  E-value=2.6e-17  Score=137.08  Aligned_cols=263  Identities=9%  Similarity=0.041  Sum_probs=187.0

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEe-EEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQL-FSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESS   84 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~   84 (343)
                      +.++.|.+||..+       ++....... ..-.........+++. +..+++...++.|.+||..+++.+..+..  ..
T Consensus        14 ~~~~~l~~~d~~t-------~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~   84 (328)
T 3dsm_A           14 YSNATLSYYDPAT-------CEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG--FT   84 (328)
T ss_dssp             SCCBEEEEEETTT-------TEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CS
T ss_pred             CCCceEEEEECCC-------CEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC--CC
Confidence            3478999999876       211100000 0000122346778888 45555556679999999999999888854  36


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc-----ccEEEEEEecCCCEEEEEe-CCCeEEEEE
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK-----KGVNDLAVHHSGKLALTVG-RDDCLAMVN  158 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~~~~-~d~~i~~wd  158 (343)
                      ....+++++++     +.+++...++.|.+||..+++....+....     .....+++ .+++.+++.. .++.|.++|
T Consensus        85 ~p~~i~~~~~g-----~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           85 SPRYIHFLSDE-----KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             SEEEEEEEETT-----EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEE
T ss_pred             CCcEEEEeCCC-----eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEE
Confidence            78999998887     455554489999999999988877776433     14456777 3444444433 489999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC----------CcEEEEEcccceeEEEecC--CcceEEeeecC-CCe
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE----------EKVGIHQAEDAKLLCELDG--KKRILCAAPGE-NGV  224 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~i~~~d~~~~~~~~~~~~--~~~i~~~~~~~-~~~  224 (343)
                      +.+++..........+..+.++|++++++++ .+          +.|.++|..+++....+..  ......+++++ ++.
T Consensus       159 ~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          159 TETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             TTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             CCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence            9999888877777778889999999977777 44          7899999999988877763  34688999984 677


Q ss_pred             EEEEeCCCcEEEEECCCCceeE-EecccccccEEEEEEEecCCCCCCCCCCeEEEEE----cCCCcEEEEeccCcc
Q 019326          225 LFTGGEDRSITAWDTNSGKVAY-CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA----SSDGVICVWDVRMAI  295 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----~~dg~i~vwd~~~~~  295 (343)
                      ++++..  .|.+||..+++... .+...+.....+++++|++.        +++++.    ..++.|.+||.. ++
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g--------~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG--------EVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC--------CEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC--------eEEEEcccccccCCEEEEECCC-CC
Confidence            777654  89999998887532 11102246788999998443        166666    678999999998 54

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=2.4e-16  Score=131.68  Aligned_cols=225  Identities=10%  Similarity=0.019  Sum_probs=158.0

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC--
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD--  109 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--  109 (343)
                      ....+..+...+.+++|+  +++++++..++.|.+||.++++.......+ ...+.++++++++     +++++...+  
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg-----~l~v~~~~~~~  109 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDG-----RLFVCYLGDFK  109 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTS-----CEEEEECTTSS
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCC-----cEEEEeCCCCC
Confidence            344555677788999998  666677888999999999988766544445 5789999999998     666666655  


Q ss_pred             --CeEEEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceeEEEEcCCcceEEEE
Q 019326          110 --GFVSIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGR------DDCLAMVNLVRGRRSFYHKIGKEASLIKF  179 (343)
Q Consensus       110 --g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  179 (343)
                        +.|.+||.++++....+.  .+...+.+++++|+++++++...      .+.|..+|..+++..........+..+++
T Consensus       110 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence              689999998766543332  23457899999999987776654      35677777665554433333345788999


Q ss_pred             eCCCCEEEEE--eCCcEEEEEccc-ceeEEE--------ecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          180 DGSGEKFFMV--TEEKVGIHQAED-AKLLCE--------LDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       180 ~~~~~~~~~~--~~~~i~~~d~~~-~~~~~~--------~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                      +|+++.++++  .++.|.+|+..+ +.....        +.....+..+++++ ++++++...++.|.+||. +++.+..
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~  268 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQ  268 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEE
Confidence            9999876655  578999999863 332211        11223577788874 455555556789999998 4777766


Q ss_pred             ecccccc------cEEEEEEEecCC
Q 019326          248 IEDAHSA------RVKGIVVLTKND  266 (343)
Q Consensus       248 ~~~~h~~------~v~~~~~~~~~~  266 (343)
                      +. .+..      .+.+++|++++.
T Consensus       269 ~~-~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          269 IL-IPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             EE-CTTGGGTCSCBCCEEEECTTSC
T ss_pred             EE-cCCCccccccCcceEEECCCCC
Confidence            65 3332      688999987754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=166.17  Aligned_cols=230  Identities=10%  Similarity=0.028  Sum_probs=161.5

Q ss_pred             EEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC---CeEEEEEeCCCCCCCCceEEEeeC---------CCeE
Q 019326           47 TVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESS---SVTSLAFYTPQNLSVPRNLFSTSA---------DGFV  112 (343)
Q Consensus        47 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~~~~~l~s~~~---------dg~i  112 (343)
                      +++|+  +. ++..+.|+.|++||+.+++....+..+ ..   .+.+++|+|++     ++|++++.         ++.|
T Consensus        20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~SpDg-----~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNR-TMKSVNASNYGLSPDR-----QFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHH-HHHTTTCSEEEECTTS-----SEEEEEEEEEECSSSCEEEEE
T ss_pred             ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccc-cccccceeeEEECCCC-----CeEEEEecCceeEEeecceEE
Confidence            66787  54 444556999999999999887777655 33   48999999999     78888876         7899


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC--C-----------------c
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG--K-----------------E  173 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~-----------------~  173 (343)
                      ++||+.+++.+.... ....+..++|+|||+.|+.+. ++.|++||+.+++........  .                 .
T Consensus        93 ~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           93 YIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             EEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred             EEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence            999999887631111 124688899999999999886 789999999887754322111  1                 1


Q ss_pred             ceEEEEeCCCCEEEEE-eCC----------------------------------cEEEEEcccceeE--EEe-------c
Q 019326          174 ASLIKFDGSGEKFFMV-TEE----------------------------------KVGIHQAEDAKLL--CEL-------D  209 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~----------------------------------~i~~~d~~~~~~~--~~~-------~  209 (343)
                      ...++|+|+|+.|+.+ .+.                                  .+.+||+.+++..  ..+       .
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            1479999999999988 432                                  6889999887642  121       2


Q ss_pred             CCcceEEeeecCCC-eEEEEeCC----CcEEEEE----CCCCceeEEec---ccccccEE-----EEEEEecCCCCCCCC
Q 019326          210 GKKRILCAAPGENG-VLFTGGED----RSITAWD----TNSGKVAYCIE---DAHSARVK-----GIVVLTKNDGGSTAE  272 (343)
Q Consensus       210 ~~~~i~~~~~~~~~-~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~h~~~v~-----~~~~~~~~~~~~~~~  272 (343)
                      +...+..++|++++ ++++....    ..|.+||    ..+++....+.   ..|...+.     .+.|+|++.      
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~------  324 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI------  324 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS------
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC------
Confidence            56678999999655 44443322    2488899    77766543331   25666666     788988876      


Q ss_pred             CCeEEE--EEcCCC--cEEEEeccCc
Q 019326          273 NPYLVA--SASSDG--VICVWDVRMA  294 (343)
Q Consensus       273 ~~~~l~--s~~~dg--~i~vwd~~~~  294 (343)
                         .|+  ++..+|  .|.+||+.++
T Consensus       325 ---~l~~~~~~~~g~~~l~~~~~~~~  347 (719)
T 1z68_A          325 ---SYYKIFSDKDGYKHIHYIKDTVE  347 (719)
T ss_dssp             ---CEEEEEECTTSCEEEEEESSCST
T ss_pred             ---eEEEEEEccCCceEEEEEECCCC
Confidence               443  455666  4666676654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.81  E-value=1.1e-16  Score=129.57  Aligned_cols=203  Identities=12%  Similarity=0.079  Sum_probs=163.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCC-CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES-SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      ++.|++++.++.|.+||.++++.+..+..+ . ..+.++.+.|++     ++++  +.++.|..||. +++.+..+..+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-~~~~~~~~~~~pdG-----~ilv--s~~~~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLE-KGWECNSVAATKAG-----EILF--SYSKGAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECC-TTCCCCEEEECTTS-----CEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCC-ccCCCcCeEECCCC-----CEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence            678999999999999999999999999877 4 578999999999     6777  45778999999 789999988753


Q ss_pred             -ccEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceeEEEEcCC-------cceEEEEeCCCCEEEEE-eCCcEEEEEcc
Q 019326          131 -KGVNDLAVHHSGKLALTVGR-DDCLAMVNLVRGRRSFYHKIGK-------EASLIKFDGSGEKFFMV-TEEKVGIHQAE  200 (343)
Q Consensus       131 -~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~i~~~d~~  200 (343)
                       ..+.++.+.++|+++++.+. ++.+..+|. +++.+.......       ....++..++++++++. .++.|..||..
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence             47889999999999999887 788888885 677666655432       23456789999999988 89999999998


Q ss_pred             cceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEeccccc------ccEEEEEEEecCC
Q 019326          201 DAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHS------ARVKGIVVLTKND  266 (343)
Q Consensus       201 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~------~~v~~~~~~~~~~  266 (343)
                       ++.+.++.......++... ++++++++..++.|..+|..+|+.+.++. .+.      ..+.+++..+++.
T Consensus       155 -G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          155 -GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN-ANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             -SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE-GGGSBSCCCSEEEEEEECTTSC
T ss_pred             -CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec-CCCCCCccccccccceEcCCCC
Confidence             9999998865555555555 56788888888899999999999999986 332      2367777777665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=2.9e-17  Score=139.05  Aligned_cols=261  Identities=10%  Similarity=0.037  Sum_probs=170.0

Q ss_pred             eEEEeeCC--CeEEEEEc--CCCeeee--Eec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC-Ccceeee
Q 019326           54 AAASGGTD--DTIHLYDL--STSSSLG--AIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD-PFVLLTS  125 (343)
Q Consensus        54 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~  125 (343)
                      .+++|+..  +.|.+|++  .+++...  ... .. ...+..++|+|++     ++|++++.+ .|.+|++. +++....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~-~~~~~~~a~spdg-----~~l~~~~~~-~v~~~~~~~~g~~~~~   76 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQ-DEPISWMTFDHER-----KNIYGAAMK-KWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCT-TCCCSEEEECTTS-----SEEEEEEBT-EEEEEEEEETTEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCC-CCCCcEEEECCCC-----CEEEEEccc-eEEEEEECCCCCEEEe
Confidence            35555543  56887765  4555422  221 22 3568899999999     788888888 99999997 6665443


Q ss_pred             eeec-cccEEEEEEecCCCE--EEEEe-------------CCCeEEEEEcc-CCceeEEEE-----cCCcceEEEEeCCC
Q 019326          126 VKVH-KKGVNDLAVHHSGKL--ALTVG-------------RDDCLAMVNLV-RGRRSFYHK-----IGKEASLIKFDGSG  183 (343)
Q Consensus       126 ~~~~-~~~v~~i~~~~~~~~--l~~~~-------------~d~~i~~wd~~-~~~~~~~~~-----~~~~~~~~~~~~~~  183 (343)
                      .... .+.+..++|+|++++  ++++.             .++.+.+|++. .++......     ....+..++|+|++
T Consensus        77 ~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            3211 123556899999984  44553             68999999997 455433222     34568899999999


Q ss_pred             CEEEEE--eCCcEEEEEcc-cceeE--EEec---CCcceEEeeecC-CCeEEEEeC-CCcEEEEECC--CCcee---EEe
Q 019326          184 EKFFMV--TEEKVGIHQAE-DAKLL--CELD---GKKRILCAAPGE-NGVLFTGGE-DRSITAWDTN--SGKVA---YCI  248 (343)
Q Consensus       184 ~~~~~~--~~~~i~~~d~~-~~~~~--~~~~---~~~~i~~~~~~~-~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~  248 (343)
                      ++++++  .++.|.+|++. +++..  ..+.   +...+..++|++ ++++++++. ++.|.+|++.  +++..   ..+
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            988877  46799999998 66543  3333   256688999995 557776664 7899999765  46542   122


Q ss_pred             c---c---cccc------cEEEEE-EEecCCCCCCCCCCeEEEEEcCC-C-----cEEEEecc-CccccCCCcccc-cc-
Q 019326          249 E---D---AHSA------RVKGIV-VLTKNDGGSTAENPYLVASASSD-G-----VICVWDVR-MAIKEKPLPLAE-AK-  306 (343)
Q Consensus       249 ~---~---~h~~------~v~~~~-~~~~~~~~~~~~~~~~l~s~~~d-g-----~i~vwd~~-~~~~~~~~~~~~-~~-  306 (343)
                      .   .   +|..      .+..++ |+|+++         +|++++.+ +     .|.+|++. ++..   ..+.. .. 
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l~v~~~~~~~~~~~~i~v~~~~~~g~~---~~~~~~~~~  304 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YMFASSRANKFELQGYIAGFKLRDCGSI---EKQLFLSPT  304 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EEEEEEEESSTTSCCEEEEEEECTTSCE---EEEEEEEEC
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCC---------EEEEECCCCCCCCCCeEEEEEECCCCCE---EEeeeeeec
Confidence            2   0   1222      588999 998887         77766543 2     89999996 3321   11110 11 


Q ss_pred             cccceeEEEcCC---CCceeccccCC-CCCC
Q 019326          307 TNSRLTCLAGSS---TKSFKRPQIGD-SAPK  333 (343)
Q Consensus       307 ~~~~i~~~~~s~---~~~~~~~~~~~-~~~~  333 (343)
                      ....+..++++|   ++++++....+ +.+.
T Consensus       305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            223466788899   78887776554 4433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=2.6e-18  Score=158.69  Aligned_cols=257  Identities=9%  Similarity=-0.053  Sum_probs=172.4

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC-----CeEEEEEeCCCCCCCCceEEEeeCC------
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESS-----SVTSLAFYTPQNLSVPRNLFSTSAD------  109 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~~~~l~s~~~d------  109 (343)
                      ....+++|+  +.+++++  |+.|++||+.+++....+..| ..     ....+.|+|++     ++|+.++.+      
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Spdg-----~~l~~~~~~~~~~r~   88 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENS-TFDEFGHSINDYSISPDG-----QFILLEYNYVKQWRH   88 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTT-TTTTCCSCCCEEEECTTS-----SEEEEEEEEEECSSS
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEech-hhhhhcccccceEECCCC-----CEEEEEECCeeeEEE
Confidence            346678998  6677775  899999999999988777766 32     22448899999     788888876      


Q ss_pred             ---CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC--------------
Q 019326          110 ---GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK--------------  172 (343)
Q Consensus       110 ---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------  172 (343)
                         +.+.+||+.+++.. .+..|...+...+|+|||+.|+.+. ++.|++||+.+++.........              
T Consensus        89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence               56779999998754 4566778899999999999998884 6899999998877443221111              


Q ss_pred             -----cceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCC---
Q 019326          173 -----EASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNS---  241 (343)
Q Consensus       173 -----~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~---  241 (343)
                           ....+.|+|+|+.|+..  .+..+.+|++.......  .+...+..+.+. .+..    .....|++||+.+   
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCS
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCC
Confidence                 11348999999999888  55668888764321110  122334445443 2211    1223689999998   


Q ss_pred             Cc--eeEEecc-----cccccEEEEEEEecCCCCCCCCCCeEEEEEc----CCCcEEEEeccCcc----ccCCCcccccc
Q 019326          242 GK--VAYCIED-----AHSARVKGIVVLTKNDGGSTAENPYLVASAS----SDGVICVWDVRMAI----KEKPLPLAEAK  306 (343)
Q Consensus       242 ~~--~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~----~~~~~~~~~~~  306 (343)
                      ++  ....+..     +|...+..++|+|++.         .++...    .+..|++||+.++.    +.....+....
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~---------~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          241 VTNATSIQITAPASMLIGDHYLCDVTWATQER---------ISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEETTE---------EEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             CCcceEEEecCCccCCCCCeEEEEEEEeCCCe---------EEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence            73  2334441     2778899999999986         566543    33479999999875    22112221111


Q ss_pred             cccc-----eeEEEcCCCCceec
Q 019326          307 TNSR-----LTCLAGSSTKSFKR  324 (343)
Q Consensus       307 ~~~~-----i~~~~~s~~~~~~~  324 (343)
                      ....     ....+|+||++.++
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEE
T ss_pred             CCceEccCcCCCceEcCCCCEEE
Confidence            2222     23678999998665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=3e-17  Score=140.05  Aligned_cols=261  Identities=7%  Similarity=-0.079  Sum_probs=170.7

Q ss_pred             eEEecc-CC--eEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE
Q 019326            3 LIAGSY-EK--FIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         3 l~~g~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      |+.++. ++  .|++||+..            ........+|...+..++|+  ++.|+.++.++.|++||+.+++....
T Consensus        50 l~~~~~~~g~~~l~~~d~~~------------g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~  117 (388)
T 3pe7_A           50 LLFGGAFDGPWNYYLLDLNT------------QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV  117 (388)
T ss_dssp             EEEEECTTSSCEEEEEETTT------------CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCCceEEEEeCCC------------CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence            555555 56  377777765            12223334565555567788  88999999999999999999987776


Q ss_pred             eccCCCCCeEEEE--EeCCCCCCCCceEEEe----------------------eCCCeEEEEECCCcceeeeeeeccccE
Q 019326           78 IHHHESSSVTSLA--FYTPQNLSVPRNLFST----------------------SADGFVSIFDADPFVLLTSVKVHKKGV  133 (343)
Q Consensus        78 ~~~~~~~~v~~l~--~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~v  133 (343)
                      +..+ ...+....  +++++     ++++..                      ..+..|.+||+.+++.. .+..+...+
T Consensus       118 ~~~~-~~~~~~~~~~~~~dg-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~  190 (388)
T 3pe7_A          118 YQVP-AEWVGYGTWVANSDC-----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWL  190 (388)
T ss_dssp             EECC-TTEEEEEEEEECTTS-----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCE
T ss_pred             eech-hhcccccceeECCCC-----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccc
Confidence            6655 55554444  47887     566532                      24578999999987644 444567788


Q ss_pred             EEEEEec-CCCEEEEEeCC------CeEEEEEccCCceeEEEEcC--CcceEEEEeCCCCEEEEE--eCC----cEEEEE
Q 019326          134 NDLAVHH-SGKLALTVGRD------DCLAMVNLVRGRRSFYHKIG--KEASLIKFDGSGEKFFMV--TEE----KVGIHQ  198 (343)
Q Consensus       134 ~~i~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~----~i~~~d  198 (343)
                      ..++|+| +++.|+.+..+      ..|.++|+..+.........  ..+....|+|+|+.++..  .++    .|.+||
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence            9999999 99988877753      37888887765543332222  246678999999977655  322    399999


Q ss_pred             cccceeEEEecCCc--c----eEEeeec-CCCeEEEE---------eCCCcEEEEECCCCceeEEecccccc--------
Q 019326          199 AEDAKLLCELDGKK--R----ILCAAPG-ENGVLFTG---------GEDRSITAWDTNSGKVAYCIEDAHSA--------  254 (343)
Q Consensus       199 ~~~~~~~~~~~~~~--~----i~~~~~~-~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~h~~--------  254 (343)
                      +.+++.........  .    .....|+ +++.|+..         ..+..|++||+.+++. ..+. .|..        
T Consensus       271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~~  348 (388)
T 3pe7_A          271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA-RHDTSWKVFEGD  348 (388)
T ss_dssp             TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE-ECCCCCCCBTTB
T ss_pred             cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec-cccCcccccccc
Confidence            99887533222111  1    1112355 34444432         4567899999998764 4454 4544        


Q ss_pred             ---cEEEEEEEecCCCCCCCCCCeEEEEE-cCCCcEEEEeccC
Q 019326          255 ---RVKGIVVLTKNDGGSTAENPYLVASA-SSDGVICVWDVRM  293 (343)
Q Consensus       255 ---~v~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~  293 (343)
                         .+..++|+|++.         .|+.. ..+|...||.++-
T Consensus       349 ~~~~~~~~~~spDg~---------~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          349 RQVTHPHPSFTPDDK---------QILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             SSTTCCCCEECTTSS---------EEEEEECTTSSCEEEEEEC
T ss_pred             cccCCCCccCCCCCC---------EEEEEecCCCceeEEEEEC
Confidence               577888988876         66654 4578778876653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=1.7e-17  Score=141.93  Aligned_cols=262  Identities=8%  Similarity=-0.039  Sum_probs=173.0

Q ss_pred             eEEEEec--CceEEEeeCC---CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           45 ITTVAVS--GTAAASGGTD---DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        45 v~~l~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      +.+++|+  |++|+.....   ..|.+||+.+++.......+ ......+.|+|++     +.|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~-~~~~~~~~~spdg-----~~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK-GDNTFGGFISTDE-----RAFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-CBCTTTCEECTTS-----SEEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-CCccccceECCCC-----CEEEEEEcCCcEEEEECCC
Confidence            6777888  7777766443   47888999988765444333 3223347899999     7899999999999999988


Q ss_pred             cceeeeeeeccccEEE-------------------EEEecCCCEEEEE-----eCCCeEEEEEccCCceeEEEEcCCcce
Q 019326          120 FVLLTSVKVHKKGVND-------------------LAVHHSGKLALTV-----GRDDCLAMVNLVRGRRSFYHKIGKEAS  175 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~  175 (343)
                      ++.......+......                   +.|+|+++.++..     ..+..|.+||+.+++..........+.
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  191 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLG  191 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccc
Confidence            8766555544432222                   3457777666544     356789999999988766666667788


Q ss_pred             EEEEeC-CCCEEEEE-eC------CcEEEEEcccceeEEEecC--CcceEEeeecC-CCeEEEEeCC-----CcEEEEEC
Q 019326          176 LIKFDG-SGEKFFMV-TE------EKVGIHQAEDAKLLCELDG--KKRILCAAPGE-NGVLFTGGED-----RSITAWDT  239 (343)
Q Consensus       176 ~~~~~~-~~~~~~~~-~~------~~i~~~d~~~~~~~~~~~~--~~~i~~~~~~~-~~~l~~~~~d-----g~i~i~d~  239 (343)
                      .+.|+| ++..++.. .+      ..|.+|++..++......+  ...+..+.|++ ++.|+.++.+     +.|++||+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            999999 78877666 32      4688888876554333332  33577889984 5666655443     44999999


Q ss_pred             CCCceeEEecccccccEEEEEEEe-cCCCCCCCCCCeEEEEEc----------------CCCcEEEEeccCccccCCCcc
Q 019326          240 NSGKVAYCIEDAHSARVKGIVVLT-KNDGGSTAENPYLVASAS----------------SDGVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~~----------------~dg~i~vwd~~~~~~~~~~~~  302 (343)
                      .+++......  .. ... +.|++ ++.         ++++++                .++.|++||+.++..   ..+
T Consensus       272 ~~g~~~~l~~--~~-~~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l  335 (396)
T 3c5m_A          272 ETLENEEVMV--MP-PCS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA---QKL  335 (396)
T ss_dssp             TTCCEEEEEE--CC-SEE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEEEETTTTBC---CEE
T ss_pred             CCCCeEEeee--CC-CCC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEEEecccCce---EEc
Confidence            8886543322  11 123 78888 776         777654                347899999987642   122


Q ss_pred             ccccc---------ccceeEEEcCCCCceeccccC
Q 019326          303 AEAKT---------NSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       303 ~~~~~---------~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      .....         ...+...+|+++++.++....
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence            11111         002456788999987765544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=4.1e-15  Score=131.73  Aligned_cols=293  Identities=14%  Similarity=0.061  Sum_probs=205.1

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcC--CCeeeeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLS--TSSSLGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~--~~~~~~~~   78 (343)
                      +++...++.|.++|..+            .+.+..+.. ...+..++|+  ++++++++.|+.|.+||+.  +++.+..+
T Consensus       170 ~V~~~~~~~V~viD~~t------------~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          170 SVTLRDAGQIALIDGST------------YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             EEEETTTTEEEEEETTT------------CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             EEEeCCCCeEEEEECCC------------CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            56667789999999887            233334432 2356688998  8899999999999999996  78888888


Q ss_pred             ccCCCCCeEEEEEe----CCCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeec----------cc-cEEEEEEecCC
Q 019326           79 HHHESSSVTSLAFY----TPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVH----------KK-GVNDLAVHHSG  142 (343)
Q Consensus        79 ~~~~~~~v~~l~~~----~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~----------~~-~v~~i~~~~~~  142 (343)
                      ...  .....++|+    |++     ++++++.. +++|.++|..+.+.+..+...          .. .+..+..++++
T Consensus       237 ~~G--~~P~~ia~s~~~~pDG-----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~  309 (567)
T 1qks_A          237 KIG--SEARSIETSKMEGWED-----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  309 (567)
T ss_dssp             ECC--SEEEEEEECCSTTCTT-----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             ecC--CCCceeEEccccCCCC-----CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence            765  456799999    688     67766655 689999999999888876532          12 67888888876


Q ss_pred             CE-EEEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecC------C
Q 019326          143 KL-ALTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDG------K  211 (343)
Q Consensus       143 ~~-l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~------~  211 (343)
                      .. ++....+|.|.++|....+...  ..........+.|+|++++++++  .++.|.++|+.+++....+.-      .
T Consensus       310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php  389 (567)
T 1qks_A          310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP  389 (567)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence            54 4555567999999998765333  33344567788999999998877  689999999999988766643      2


Q ss_pred             cceEEeeecC-CC-eEEEEe-CCCcEEEEECCC-------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          212 KRILCAAPGE-NG-VLFTGG-EDRSITAWDTNS-------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       212 ~~i~~~~~~~-~~-~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      +.-..+ +++ ++ +.+++. .++.|.++|..+       .+.++++. .....-..+..+|++.         ++....
T Consensus       390 g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~-~~g~g~~~i~~~p~~~---------~l~v~~  458 (567)
T 1qks_A          390 GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALGGGSLFIKTHPNSQ---------YLYVDA  458 (567)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCS---------EEEEEC
T ss_pred             ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe-cCCCCCEEEEeCCCCC---------eEEEec
Confidence            212222 333 34 444443 468999999987       56777777 4333334466777766         777765


Q ss_pred             C-------CCcEEEEeccCccc---cCC---Cccc---cc-ccccceeEEEcCCCCceeccc
Q 019326          282 S-------DGVICVWDVRMAIK---EKP---LPLA---EA-KTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       282 ~-------dg~i~vwd~~~~~~---~~~---~~~~---~~-~~~~~i~~~~~s~~~~~~~~~  326 (343)
                      .       .+.|.|+|+.+...   ...   .++.   .. ....++..+.++++|+++...
T Consensus       459 ~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          459 TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             CCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence            2       35999999997611   111   1111   01 124578999999999876554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=7.1e-17  Score=149.11  Aligned_cols=290  Identities=10%  Similarity=0.037  Sum_probs=179.3

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCC-----eEEEEec--CceEEEeeCC---------CeEEEEEcCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSP-----ITTVAVS--GTAAASGGTD---------DTIHLYDLSTS   72 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~--~~~l~s~~~d---------g~i~iwd~~~~   72 (343)
                      |+.|++||+.+       ++     ....+.+|...     ...++|+  |++|+.++.+         +.+.+||+.++
T Consensus        35 ~~~i~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~  102 (740)
T 4a5s_A           35 ENNILVFNAEY-------GN-----SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (740)
T ss_dssp             TTEEEEEETTT-------CC-----EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCcEEEEECCC-------Cc-----eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence            89999999987       22     22334555433     2346777  8888888876         56779999998


Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-eeccccE-----------------E
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-KVHKKGV-----------------N  134 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~  134 (343)
                      +... +..+ ...+...+|+|++     +.|+.+ .++.|++|++.+++..+.. .++...+                 .
T Consensus       103 ~~~~-l~~~-~~~~~~~~~SPdG-----~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A          103 QLIT-EERI-PNNTQWVTWSPVG-----HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EECC-SSCC-CTTEEEEEECSST-----TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             cEEE-cccC-CCcceeeEECCCC-----CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            7654 5556 6789999999999     778777 4689999999887654321 2222222                 3


Q ss_pred             EEEEecCCCEEEEEeCCC------------------------------------eEEEEEccC---Cc---eeEEEE---
Q 019326          135 DLAVHHSGKLALTVGRDD------------------------------------CLAMVNLVR---GR---RSFYHK---  169 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~d~------------------------------------~i~~wd~~~---~~---~~~~~~---  169 (343)
                      .+.|+|||+.|+.++.|.                                    .|++||+.+   ++   ......   
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            489999999998875321                                    588899988   73   222221   


Q ss_pred             ---cCCcceEEEEeCCCCEEEEE-eC----CcEEEEEcccce----eE--EE---ecCCcce-----EEeeecC-CCeEE
Q 019326          170 ---IGKEASLIKFDGSGEKFFMV-TE----EKVGIHQAEDAK----LL--CE---LDGKKRI-----LCAAPGE-NGVLF  226 (343)
Q Consensus       170 ---~~~~~~~~~~~~~~~~~~~~-~~----~~i~~~d~~~~~----~~--~~---~~~~~~i-----~~~~~~~-~~~l~  226 (343)
                         ....+..++|+|+++.++.. ..    ..|.+||+.+++    +.  ..   -.+...+     ....|++ ++.++
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence               23447789999999976665 32    269999999876    21  11   1233333     2567874 55554


Q ss_pred             -EEe-CC--CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC----CCcEEEEeccCccccC
Q 019326          227 -TGG-ED--RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS----DGVICVWDVRMAIKEK  298 (343)
Q Consensus       227 -~~~-~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~  298 (343)
                       ..+ .+  ..|++||...++. ..+. .....+..+.. +++.        .++++++.    .+...||.++......
T Consensus       335 ~~~s~~~G~~~l~~~~~~~~~~-~~lT-~g~~~v~~~~~-~d~~--------~i~f~~~~~~~~~~~~~ly~v~~~g~~~  403 (740)
T 4a5s_A          335 KIISNEEGYRHICYFQIDKKDC-TFIT-KGTWEVIGIEA-LTSD--------YLYYISNEYKGMPGGRNLYKIQLIDYTK  403 (740)
T ss_dssp             EEEECTTSCEEEEEEETTCSSC-EESC-CSSSCEEEEEE-ECSS--------EEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred             EEEEcCCCceEEEEEECCCCce-Eecc-cCCEEEEEEEE-EeCC--------EEEEEEecCCCCCceeEEEEEECCCCCc
Confidence             444 34  4588889886654 4555 33455555542 3333        14555554    2445666554321111


Q ss_pred             CCcccc--cccccceeEEEcCCCCceeccccCC
Q 019326          299 PLPLAE--AKTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       299 ~~~~~~--~~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                      ...+..  ...........||+++++++.....
T Consensus       404 ~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          404 VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             EEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             ceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence            101111  0123457889999999876644433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.3e-16  Score=133.35  Aligned_cols=267  Identities=12%  Similarity=0.044  Sum_probs=180.4

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ..|.+++|+  +..++..+.++.++.|   .++....+..+ ...+.+++|++++     ++++++..++.|.+||..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~g-----~l~~~~~~~~~i~~~d~~~~   76 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKK-GLQLEGLNFDRQG-----QLFLLDVFEGNIFKINPETK   76 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESS-CCCEEEEEECTTS-----CEEEEETTTCEEEEECTTTC
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEecc-CccccCcEECCCC-----CEEEEECCCCEEEEEeCCCC
Confidence            456777887  4556666778889999   35566667666 6778999999988     67778888999999999887


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCC----CeEEEEEccCCceeEEEE---cCCcceEEEEeCCCCEEEEEe---
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRD----DCLAMVNLVRGRRSFYHK---IGKEASLIKFDGSGEKFFMVT---  190 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---  190 (343)
                      +.......+...+.+++++|+++++++...+    +.|.+||..++.......   ....+..++++|+++.+++..   
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  156 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY  156 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred             cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence            7655444566789999999999888777666    689999998876543322   234578899999998887764   


Q ss_pred             ----CCcEEEEEcccceeEEEecCCcceEEeeecC-CCeE-EEEeCCCcEEEEECCC-CceeEEe------c-ccccccE
Q 019326          191 ----EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNS-GKVAYCI------E-DAHSARV  256 (343)
Q Consensus       191 ----~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~-~~~~~~~------~-~~h~~~v  256 (343)
                          .+.|..++..+++..........+..+++++ ++.+ ++.+.++.|.+||..+ +..+..+      . .++ ..+
T Consensus       157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~  235 (333)
T 2dg1_A          157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGP  235 (333)
T ss_dssp             TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEE
T ss_pred             ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCC
Confidence                2456666665554443333334567888885 4545 4555678999999964 3333211      1 012 467


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccc--ccccceeEEEcCCCCceeccccCC
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA--KTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                      ..+++.+++.         ++++...++.|.+||.+.. ..........  .....+.++++++++..+......
T Consensus       236 ~~i~~d~~G~---------l~v~~~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          236 DSCCIDSDDN---------LYVAMYGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEEBTTCC---------EEEEEETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CceEECCCCC---------EEEEEcCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            8888888776         7777777899999998532 1111111000  000147889999987655444433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=2.5e-16  Score=131.13  Aligned_cols=245  Identities=11%  Similarity=0.035  Sum_probs=177.1

Q ss_pred             CCCeEEEEEcCCCeeeeEecc----C-CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEE
Q 019326           60 TDDTIHLYDLSTSSSLGAIHH----H-ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVN  134 (343)
Q Consensus        60 ~dg~i~iwd~~~~~~~~~~~~----~-~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  134 (343)
                      .++.|.++|.++++....+..    . .......+.+.. +     +.+++...++.|.+||..+++.+.++. ......
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~-----~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~   87 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-G-----IGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPR   87 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-T-----EEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-C-----EEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCc
Confidence            478999999999987665421    1 023467788754 3     466777778999999999999988885 446788


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC------cceEEEEeCCCCEEEEE--e-CCcEEEEEcccceeE
Q 019326          135 DLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK------EASLIKFDGSGEKFFMV--T-EEKVGIHQAEDAKLL  205 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~-~~~i~~~d~~~~~~~  205 (343)
                      .++++++++.+++...++.|.+||..+++.........      .+..+++  ++..++++  . ++.|.++|+.+++..
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            99999988555554478999999999998877777666      6777887  34444444  2 789999999999998


Q ss_pred             EEecCCcceEEeeecC-CCeEEEEeCC----------CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCC
Q 019326          206 CELDGKKRILCAAPGE-NGVLFTGGED----------RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       206 ~~~~~~~~i~~~~~~~-~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  274 (343)
                      ..+........+.+++ +++++++..+          +.|.++|..+++....+..........++++|++.        
T Consensus       166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--------  237 (328)
T 3dsm_A          166 DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--------  237 (328)
T ss_dssp             EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC--------
T ss_pred             EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC--------
Confidence            8887555567778875 4444444443          78999999999887777622234789999999876        


Q ss_pred             eEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC-CCceeccc
Q 019326          275 YLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS-TKSFKRPQ  326 (343)
Q Consensus       275 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~~~~~  326 (343)
                       +|+.+..  .|.+||..+++... ...... .......++++| ++.+.++.
T Consensus       238 -~lyv~~~--~v~~~d~~t~~~~~-~~~~~~-~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          238 -TLYWINN--DIWRMPVEADRVPV-RPFLEF-RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             -EEEEESS--SEEEEETTCSSCCS-SCSBCC-CSSCEEEEEECTTTCCEEEEE
T ss_pred             -EEEEEcc--EEEEEECCCCceee-eeeecC-CCCceEEEEEcCCCCeEEEEc
Confidence             7777654  89999998765321 111111 135688999998 56665655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=5.5e-17  Score=148.20  Aligned_cols=238  Identities=11%  Similarity=0.031  Sum_probs=165.6

Q ss_pred             EecCCCCCeEEEEecCceEE--Ee--eCCCeEEEEEcCCCeeeeEeccCCCCCeE---------EEEEe--CCCCCCCCc
Q 019326           37 SYPAHLSPITTVAVSGTAAA--SG--GTDDTIHLYDLSTSSSLGAIHHHESSSVT---------SLAFY--TPQNLSVPR  101 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~~~~l~--s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---------~l~~~--~~~~~~~~~  101 (343)
                      .+.+|...+..++++++.++  +.  +.++...||....+.....+..+ ...+.         ...|+  |++     +
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~SPDg-----~   91 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-PWNVRNRVFEYSGFPWAGVPRPAG-----G   91 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-TCCBCCCGGGTCCCCEEEECCSSS-----S
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-CccccccccccCCccceeeeecCC-----C
Confidence            45578999999999955433  33  44788999996555556666666 45555         56666  888     5


Q ss_pred             e-EEEee-CCCeEEEEECC--C-cceeeeeee-----ccccEEEEEEecCCCEEEEEeCC----------CeEEEEEccC
Q 019326          102 N-LFSTS-ADGFVSIFDAD--P-FVLLTSVKV-----HKKGVNDLAVHHSGKLALTVGRD----------DCLAMVNLVR  161 (343)
Q Consensus       102 ~-l~s~~-~dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d----------~~i~~wd~~~  161 (343)
                      . |+.++ .+..|.++++.  + ++ ...+..     |...+..++|+|||+.|+.++.+          ..|++||+.+
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            6 55444 36677777776  2 33 444444     56788999999999999998876          5899999988


Q ss_pred             ------CceeEEE-EcCCcceEEEEeCCCCEEEEE-eC--------CcEEEEEcc-cc---eeEEEec-CCcceEEeeec
Q 019326          162 ------GRRSFYH-KIGKEASLIKFDGSGEKFFMV-TE--------EKVGIHQAE-DA---KLLCELD-GKKRILCAAPG  220 (343)
Q Consensus       162 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~--------~~i~~~d~~-~~---~~~~~~~-~~~~i~~~~~~  220 (343)
                            ++..... .....+..++|+|+|++++.+ .+        ..|.+||+. ++   +...... +...+..+.|+
T Consensus       171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence                  5543333 334556778999999999877 44        379999998 56   3333333 46788999998


Q ss_pred             -CCCeEEEEeCCC--cEEEEECCCCceeEEeccccccc--------EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          221 -ENGVLFTGGEDR--SITAWDTNSGKVAYCIEDAHSAR--------VKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       221 -~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                       +++++++++.++  .|.+||..+++...... .+...        +..+++++++.         ++++++. +.++||
T Consensus       251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~---------~~~~~~~-~~~~l~  319 (662)
T 3azo_A          251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGL---------IAVVHGK-GAAVLG  319 (662)
T ss_dssp             TTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSC---------EEEEEBS-SSCEEE
T ss_pred             CCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCE---------EEEEEEc-CccEEE
Confidence             456777777788  67777776666443333 33222        45677776665         8999998 999999


Q ss_pred             ecc
Q 019326          290 DVR  292 (343)
Q Consensus       290 d~~  292 (343)
                      .++
T Consensus       320 ~~d  322 (662)
T 3azo_A          320 ILD  322 (662)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=1.6e-15  Score=123.87  Aligned_cols=219  Identities=15%  Similarity=0.165  Sum_probs=154.8

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe------cCCCCCeEEEEe-c--CceEEEeeC-CCeEEEEEcCCC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY------PAHLSPITTVAV-S--GTAAASGGT-DDTIHLYDLSTS   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~-~--~~~l~s~~~-dg~i~iwd~~~~   72 (343)
                      +++...++.|++||...        +     ....+      .+|...+.++++ .  +.++++... ++.|++|| .++
T Consensus        44 ~v~~~~~~~i~~~d~~g--------~-----~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g  109 (286)
T 1q7f_A           44 IVADTNNHRIQIFDKEG--------R-----FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG  109 (286)
T ss_dssp             EEEEGGGTEEEEECTTS--------C-----EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred             EEEECCCCEEEEECCCC--------c-----EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence            34556788899998653        1     11122      235567899999 3  444444433 78999999 567


Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee--eccccEEEEEEecCCCEEEEEeC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~  150 (343)
                      +.+..+.......+..+++.+++     +++++...++.|.+||.. ++.+..+.  .+...+..++++++++++++...
T Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~g-----~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          110 QFVRKFGATILQHPRGVTVDNKG-----RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTS-----CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             cEEEEecCccCCCceEEEEeCCC-----CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            77776654324678999999998     677777778999999965 45555554  23456899999999998888788


Q ss_pred             CCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEE-eCC-cEEEEEcccceeEEEec-C--CcceEEeeecCC
Q 019326          151 DDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMV-TEE-KVGIHQAEDAKLLCELD-G--KKRILCAAPGEN  222 (343)
Q Consensus       151 d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-~i~~~d~~~~~~~~~~~-~--~~~i~~~~~~~~  222 (343)
                      ++.|++||.. ++.+......   ..+..++++++++++++. .++ .|.+|+. +++.+..+. +  ...+..++++++
T Consensus       184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            9999999974 4444444332   467889999999888887 565 9999995 456666554 2  234678888755


Q ss_pred             CeEEEEeCCCcEEEEECCCCc
Q 019326          223 GVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       223 ~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      ..+++++.++.|++|+.....
T Consensus       262 g~l~vs~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          262 GSVVLASKDYRLYIYRYVQLA  282 (286)
T ss_dssp             TEEEEEETTTEEEEEECSCCC
T ss_pred             CcEEEECCCCeEEEEEccccc
Confidence            445555779999999986544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=6.9e-16  Score=129.57  Aligned_cols=236  Identities=17%  Similarity=0.157  Sum_probs=161.7

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCC---C--eEEEEEcCCCeeeeEeccC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTD---D--TIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~   81 (343)
                      ++.|++|++..       ++.   ..   +    ..+..++|+  |+.|+.++.+   +  .|.+|++.+++.......+
T Consensus        42 ~~~l~~~d~~~-------~~~---~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~  104 (347)
T 2gop_A           42 ENTIVIENLKN-------NAR---RF---I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK  104 (347)
T ss_dssp             EEEEEEEETTT-------CCE---EE---E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES
T ss_pred             cceEEEEeCCC-------Cce---EE---c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC
Confidence            56778888765       221   11   1    467889998  7888877654   3  4888888888766655544


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCC---------------------------CeEEEEECCCcceeeeeeeccccEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSAD---------------------------GFVSIFDADPFVLLTSVKVHKKGVN  134 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~  134 (343)
                        . +..++|+|++     +.|+.++.+                           ..|++||+.+++.+..+.. . .+.
T Consensus       105 --~-~~~~~wspdg-----~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~  174 (347)
T 2gop_A          105 --N-IRSLEWNEDS-----RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS  174 (347)
T ss_dssp             --E-EEEEEECTTS-----SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC
T ss_pred             --C-ccceeECCCC-----CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc
Confidence              3 9999999999     677776532                           5799999988876455554 3 788


Q ss_pred             EEEEecCCCEEEEEeCCC-------eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eC--------CcEEEEE
Q 019326          135 DLAVHHSGKLALTVGRDD-------CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TE--------EKVGIHQ  198 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~i~~~d  198 (343)
                      .++|+|++ +++++..++       ...+|.+.+++....... ..+  ..++|+|+.++.. .+        ..|.+||
T Consensus       175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             cccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            99999999 777776542       344444445543333332 233  3349999988776 33        3577777


Q ss_pred             cccceeEEEec-CCcceEE-eeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          199 AEDAKLLCELD-GKKRILC-AAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       199 ~~~~~~~~~~~-~~~~i~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                        +++...... +...+.. +.|+ ++++++++.++.+++| +.+++.. .+. .+...|.++++++  .         +
T Consensus       251 --~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~~-~~~~~v~~~~~s~--~---------~  313 (347)
T 2gop_A          251 --GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PIA-KGRHWIMGFDVDE--I---------V  313 (347)
T ss_dssp             --SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EEE-CSSSEEEEEEESS--S---------E
T ss_pred             --CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EEe-cCCCeEEeeeeeC--c---------E
Confidence              555433333 4566775 8888 4488889999999999 8766654 343 4577899999988  3         7


Q ss_pred             EEEEcCCCcE-EEEecc
Q 019326          277 VASASSDGVI-CVWDVR  292 (343)
Q Consensus       277 l~s~~~dg~i-~vwd~~  292 (343)
                      +++++.++.. .+|.++
T Consensus       314 ~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          314 VYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEECSSSCCEEEEES
T ss_pred             EEEEcCCCChHHheEeC
Confidence            8888777765 788775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=1.8e-15  Score=124.21  Aligned_cols=233  Identities=7%  Similarity=-0.033  Sum_probs=163.6

Q ss_pred             ecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           38 YPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +..+.....+++|+  ++ +++++..++.|..|+..++  ...+..+ ...+.++++++++     +++++...++.|.+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~l~~~~dg-----~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP-SHHQNGHCLNKQG-----HLIACSHGLRRLER   94 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS-CSSEEEEEECTTC-----CEEEEETTTTEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC-CCCcceeeECCCC-----cEEEEecCCCeEEE
Confidence            33556678899998  65 7888888999999999877  5566666 6789999999998     66666666789999


Q ss_pred             EECCCcceeeeeeec----cccEEEEEEecCCCEEEEE----e-------------CCCeEEEEEccCCceeEEEEcCCc
Q 019326          115 FDADPFVLLTSVKVH----KKGVNDLAVHHSGKLALTV----G-------------RDDCLAMVNLVRGRRSFYHKIGKE  173 (343)
Q Consensus       115 wd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~----~-------------~d~~i~~wd~~~~~~~~~~~~~~~  173 (343)
                      ||..+++........    ...+..++++|+|+++++.    +             ..+.|..++.. ++..........
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence            999777654333222    1246789999999988873    2             13456666655 444333334456


Q ss_pred             ceEEEEeCCCCEEEEE-eCCcEEEEEcc-ccee---EEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          174 ASLIKFDGSGEKFFMV-TEEKVGIHQAE-DAKL---LCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~-~~~~i~~~d~~-~~~~---~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                      +..++|+|+++.+++. .++.|.+|++. +++.   ...+. +...+..+++++++.++++. ++.|.+||.. ++.+..
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEE
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEE
Confidence            7889999999998555 67899999986 4443   22322 33445678887555555555 8899999987 778887


Q ss_pred             ecccccccEEEEEEE-ecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          248 IEDAHSARVKGIVVL-TKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +. .+.. +++++|. +++.         .|+.++.++ +.-++.++
T Consensus       252 ~~-~~~~-~~~~~f~~~d~~---------~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          252 VL-TPQT-TSNLCFGGPEGR---------TLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             EE-CSSC-CCEEEEESTTSC---------EEEEEETTE-EEEEECSC
T ss_pred             EE-CCCC-ceeEEEECCCCC---------EEEEEcCCe-EEEEEccc
Confidence            77 5666 8999995 4544         777777663 33344444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=2.5e-15  Score=126.18  Aligned_cols=250  Identities=12%  Similarity=0.040  Sum_probs=163.7

Q ss_pred             CeEEEEecCceEEEe---------eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC---C-
Q 019326           44 PITTVAVSGTAAASG---------GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD---G-  110 (343)
Q Consensus        44 ~v~~l~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d---g-  110 (343)
                      .+...+++|+.++..         ..++.|.+||+.+++... +     ..+..++|+|++     +.|+.++.+   + 
T Consensus        16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-----~~~~~~~~SpDg-----~~la~~~~~~~~~~   84 (347)
T 2gop_A           16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-----ENATMPRISPDG-----KKIAFMRANEEKKV   84 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-----ESCEEEEECTTS-----SEEEEEEEETTTTE
T ss_pred             EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-----ccCCCeEECCCC-----CEEEEEEeccCCCc
Confidence            345555576666553         236779999999876533 3     357889999999     777776653   3 


Q ss_pred             -eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC---------------------------CeEEEEEccCC
Q 019326          111 -FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD---------------------------DCLAMVNLVRG  162 (343)
Q Consensus       111 -~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------------------------~~i~~wd~~~~  162 (343)
                       .|.+||+.+++....... .. +..++|+|+++.|+.++.+                           ..|.+||+.++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             ceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence             488888888776555443 34 9999999999988887642                           57999999888


Q ss_pred             ceeEEEEcCCcceEEEEeCCCCEEEEE-eC------C-cEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCC---
Q 019326          163 RRSFYHKIGKEASLIKFDGSGEKFFMV-TE------E-KVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED---  231 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~-~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d---  231 (343)
                      +.......+ .+..+.|+|++ .++++ .+      . ...+|.+.+++......+ ..+..+ ..+++.|+.++.+   
T Consensus       163 ~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~-spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          163 EVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV-DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE-EECSSCEEEEECCSSS
T ss_pred             eEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE-CCCCCEEEEEEccccC
Confidence            762322224 78899999999 66666 32      2 345554445544333334 455555 2256667666543   


Q ss_pred             -----CcEEEEECCCCceeEEecccccccEEE-EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccc
Q 019326          232 -----RSITAWDTNSGKVAYCIEDAHSARVKG-IVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA  305 (343)
Q Consensus       232 -----g~i~i~d~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  305 (343)
                           ..|.+||  +++.. .+...|...+.. +.|+ ++          ++++++.++.++|| +.++.   ...+  .
T Consensus       239 ~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~-~~~g~---~~~~--~  298 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVM-GILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY-IWDGE---IKPI--A  298 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-EESSS---EEEE--E
T ss_pred             CccccceEEEEC--CCceE-eccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-EcCCc---eEEE--e
Confidence                 4688888  55543 443266777876 7786 43          78899999999999 87432   1122  1


Q ss_pred             ccccceeEEEcCCCCceeccccCCCCC
Q 019326          306 KTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       306 ~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                      .....|.++++++  .+.+....+..+
T Consensus       299 ~~~~~v~~~~~s~--~~~~~~~~~~~~  323 (347)
T 2gop_A          299 KGRHWIMGFDVDE--IVVYLKETATRL  323 (347)
T ss_dssp             CSSSEEEEEEESS--SEEEEEECSSSC
T ss_pred             cCCCeEEeeeeeC--cEEEEEcCCCCh
Confidence            2245688899998  455555555443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=1.6e-15  Score=122.74  Aligned_cols=226  Identities=11%  Similarity=0.081  Sum_probs=170.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC-CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL-SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|++++.++.|++||.++            .+.+.++..+. ..+.++++.  |++++  +.++.|..||. +++.+..+
T Consensus         7 ~lv~~~~~~~v~~~d~~t------------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDT------------KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             EEEECTTCSEEEEEETTT------------TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             EEEeeCCCCEEEEEECCC------------CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence            378899999999999866            24455555554 467888887  77777  45778999999 89999999


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeee------ccccEEEEEEecCCCEEEEEeCC
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKV------HKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      ..+....+.++.+.+++     +.+++.+. ++.|..+|. +++.+..+..      +......+++.++|+++++...+
T Consensus        72 ~~~~~~~~~~~~~~~dG-----~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~  145 (276)
T 3no2_A           72 AAPAGCEMQTARILPDG-----NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT  145 (276)
T ss_dssp             ECCTTCEEEEEEECTTS-----CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT
T ss_pred             cCCCCccccccEECCCC-----CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC
Confidence            87523578899999999     78888777 788888886 5677766652      22244566788999999999999


Q ss_pred             CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC-------cceEEeeecC-C
Q 019326          152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK-------KRILCAAPGE-N  222 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~-------~~i~~~~~~~-~  222 (343)
                      +.|..||.. ++.+........+..+...++++.+++. .++.+..+|..+++.+.++...       ..+..+...+ +
T Consensus       146 ~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G  224 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG  224 (276)
T ss_dssp             TEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS
T ss_pred             CEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC
Confidence            999999998 9988888887777888889999999888 6668999999999999988621       1255666654 4


Q ss_pred             CeEEEEeCC--------CcEEEEEC-CCCceeEEec
Q 019326          223 GVLFTGGED--------RSITAWDT-NSGKVAYCIE  249 (343)
Q Consensus       223 ~~l~~~~~d--------g~i~i~d~-~~~~~~~~~~  249 (343)
                      +++++....        +..+++.+ .+++.+.++.
T Consensus       225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             CEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            555554211        13345555 5788888877

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=5.9e-16  Score=129.01  Aligned_cols=245  Identities=10%  Similarity=-0.018  Sum_probs=172.2

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCC------------------------CeEEEEECCCcceeeeee-eccccEEEEE
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSAD------------------------GFVSIFDADPFVLLTSVK-VHKKGVNDLA  137 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~i~  137 (343)
                      -..+.+++++|++     +++++...+                        +.|.+||..+++.+..+. .+-.....++
T Consensus        23 l~~v~~va~d~~G-----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           23 PGQVSGVALDSKN-----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CSCEEEEEECTTC-----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE
T ss_pred             cCCceEEEECCCC-----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE
Confidence            4679999999998     677777766                        479999998888776554 3335789999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCc-eeEEEEc----------CCcceEEEEeC-CCCEEEEE--eCCcEEEEEcccce
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLVRGR-RSFYHKI----------GKEASLIKFDG-SGEKFFMV--TEEKVGIHQAEDAK  203 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~----------~~~~~~~~~~~-~~~~~~~~--~~~~i~~~d~~~~~  203 (343)
                      ++|+++++++...++.|+.||..... .+.....          -..+..++++| ++..+++.  .++.|++|+ .+++
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence            99999988888889999999986542 3333321          12578899999 77777776  378999999 5677


Q ss_pred             eEEEecCC-----------cceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecc-cccccEEEEEEEecCCCCC
Q 019326          204 LLCELDGK-----------KRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIED-AHSARVKGIVVLTKNDGGS  269 (343)
Q Consensus       204 ~~~~~~~~-----------~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~  269 (343)
                      .+..+...           .....+++++  +.++++...++.|++||..+++.+..+.. .+...+.+++++| +.  .
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~--~  253 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF--L  253 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE--E
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE--E
Confidence            77666411           2377888874  45666667789999999998998888741 4667788999988 31  0


Q ss_pred             CCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          270 TAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       270 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +..++..+++...+..|++|++.++........ .......+..+++++++.+.++...++.+..++.
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            000111223333456899999988743221110 0122345889999999998888888887665544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=1.7e-15  Score=139.36  Aligned_cols=239  Identities=14%  Similarity=0.065  Sum_probs=167.0

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCC-----eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe-
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDD-----TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF-  111 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-  111 (343)
                      +|...+..++|+  |++||.+..++     .|++||+.+++.......+  ..+..++|+|++     +.|+.++.++. 
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg-----~~l~~~~~~~~~  194 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDG-----KGMFYNAYPQQD  194 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTS-----SEEEEEECCCCS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCC-----CEEEEEEECCcc
Confidence            344568889999  78888665533     8999999999877644333  336789999999     78888887765 


Q ss_pred             ---------------EEEEECCCccee--eeee--eccccEEEEEEecCCCEEEEEeC-----CCeEEEEEccC------
Q 019326          112 ---------------VSIFDADPFVLL--TSVK--VHKKGVNDLAVHHSGKLALTVGR-----DDCLAMVNLVR------  161 (343)
Q Consensus       112 ---------------i~iwd~~~~~~~--~~~~--~~~~~v~~i~~~~~~~~l~~~~~-----d~~i~~wd~~~------  161 (343)
                                     |++|++.+++..  ..+.  .|...+..+.|+|+|++|+..+.     +..|.+||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           999999876532  2222  24456789999999999888765     57899999987      


Q ss_pred             Cc-eeEEEEcCCcceEEEEeCCCCEEEEE-e----CCcEEEEEccccee---EEEecCCc--ceEEeeec-CCCeEEEEe
Q 019326          162 GR-RSFYHKIGKEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAKL---LCELDGKK--RILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       162 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~---~~~~~~~~--~i~~~~~~-~~~~l~~~~  229 (343)
                      +. ...............|+|++..++.. .    ...|.+||+.++..   ...+.+..  .+..+.++ ++.++++..
T Consensus       275 ~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          275 GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             CccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            42 22333322222233588899888776 3    23589999887642   22333433  57788887 455777777


Q ss_pred             CCCc--EEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE-EEc---CCCcEEEEeccCcc
Q 019326          230 EDRS--ITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA-SAS---SDGVICVWDVRMAI  295 (343)
Q Consensus       230 ~dg~--i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~---~dg~i~vwd~~~~~  295 (343)
                      .++.  |.+||+.+++.+..+. .+...+..+.+++++.         .++ +.+   ..++|++||+.++.
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~---------~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDT---------EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCS---------EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEECCCCCEEEecC-CCCceEEEEecCCCCC---------EEEEEEeCCCCCCEEEEEECCCCc
Confidence            7874  6677887788788887 6777888888887664         444 333   35789999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=5.4e-16  Score=141.65  Aligned_cols=258  Identities=9%  Similarity=0.007  Sum_probs=167.0

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeE---------EEEec----Cce-EEEeeC-CCeEEEEEcC-
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPIT---------TVAVS----GTA-AASGGT-DDTIHLYDLS-   70 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~----~~~-l~s~~~-dg~i~iwd~~-   70 (343)
                      +.++...||....       +     .....+..|...+.         ...|+    ++. |+.++. +..|.++++. 
T Consensus        44 ~~~~~~~l~~~~~-------~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~  111 (662)
T 3azo_A           44 AEAGRATLVRRRA-------D-----GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA  111 (662)
T ss_dssp             TTTTEEEEEEECT-------T-----SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTS
T ss_pred             ccCCcEEEEEECC-------C-----CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCC
Confidence            4477888888633       1     11233444554544         44443    676 665443 5667777765 


Q ss_pred             -CCeeeeEecc-----CCCCCeEEEEEeCCCCCCCCceEEEeeCC----------CeEEEEECCC------cceeeeee-
Q 019326           71 -TSSSLGAIHH-----HESSSVTSLAFYTPQNLSVPRNLFSTSAD----------GFVSIFDADP------FVLLTSVK-  127 (343)
Q Consensus        71 -~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~-  127 (343)
                       .......+..     + ...+..++|+|++     +.|++++.+          ..|++||+.+      ++. ..+. 
T Consensus       112 ~g~~~~~~l~~~~~~~~-~~~~~~~~~spDg-----~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~  184 (662)
T 3azo_A          112 PGGAVPRPLTPVSAVGG-GLRWADPVLLPER-----GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD  184 (662)
T ss_dssp             TTCCCCEECSCCCCSTT-CEEEEEEEEETTT-----TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC
T ss_pred             CCCCCCEeccCCccCCC-CccccCcEECCCC-----CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe
Confidence             2033444544     4 5678999999999     788888876          5899999987      554 3444 


Q ss_pred             eccccEEEEEEecCCCEEEEEeCC--------CeEEEEEcc-CC---ceeEEEEc-CCcceEEEEeCCCCEEEEE-eCC-
Q 019326          128 VHKKGVNDLAVHHSGKLALTVGRD--------DCLAMVNLV-RG---RRSFYHKI-GKEASLIKFDGSGEKFFMV-TEE-  192 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~wd~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~-  192 (343)
                      .+...+..++|+|||++|+.++.+        ..|.+||+. ++   +....... ...+..+.|+|+|++++++ .++ 
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence            455678889999999999887755        379999998 56   33333333 4678889999999977666 566 


Q ss_pred             -cEEEEEcccceeEEEecCCcc---------eEEeeec-CCCeEEEEeCCCcEEEE--ECCCCceeEEecccccccEEEE
Q 019326          193 -KVGIHQAEDAKLLCELDGKKR---------ILCAAPG-ENGVLFTGGEDRSITAW--DTNSGKVAYCIEDAHSARVKGI  259 (343)
Q Consensus       193 -~i~~~d~~~~~~~~~~~~~~~---------i~~~~~~-~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~h~~~v~~~  259 (343)
                       .|.+||+.+++......+...         +..++++ ++.++++++. +.++||  |..+++ +..+. .|...+..+
T Consensus       265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~  341 (662)
T 3azo_A          265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-GPWTEWAAT  341 (662)
T ss_dssp             CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-SSCCEEEEE
T ss_pred             eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-CCCCeEEEE
Confidence             566777666665444333222         4567776 4567788888 999999  655554 67777 677777766


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEE--EeccCc
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICV--WDVRMA  294 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~v--wd~~~~  294 (343)
                      . ++++..       .++++++.+....+  ||+.++
T Consensus       342 ~-s~~~~~-------~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          342 L-TVSGTR-------AVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             E-EEETTE-------EEEEEEETTEEEEEEEEETTTC
T ss_pred             E-ecCCCE-------EEEEEcCCCCCCEEEEEECCCC
Confidence            2 344331       14455566654444  455554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=4.1e-15  Score=125.36  Aligned_cols=236  Identities=9%  Similarity=0.082  Sum_probs=168.1

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecC------CCCCeEEEEec--CceEEEeeC--CCeEEEEEcCCCeeeeE
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA------HLSPITTVAVS--GTAAASGGT--DDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~~~--dg~i~iwd~~~~~~~~~   77 (343)
                      .++.|.+||..+            .+.+..+..      +......++++  |++|+++..  ++.|.+||+.+++.+..
T Consensus        79 ~~~~v~v~d~~t------------~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           79 RSDVVEVWDADK------------LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             EEEEEEEEETTT------------CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECcC------------CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            367899999876            222222221      22456678887  888888764  58999999999988877


Q ss_pred             -eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeee------eeeccccEEEEEEecCCCEEEEEe
Q 019326           78 -IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTS------VKVHKKGVNDLAVHHSGKLALTVG  149 (343)
Q Consensus        78 -~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~~  149 (343)
                       +...   ....+.+.|.+.    ..+++.+.||.+.+|+... ++....      +.....++ .+.+.+++..++..+
T Consensus       147 ~i~~~---~~~~v~~~p~~~----~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~  218 (361)
T 2oiz_A          147 VTAAA---GCWSVIPQPNRP----RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS  218 (361)
T ss_dssp             EGGGT---TEEEEEECTTSS----SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB
T ss_pred             EecCC---CcceeEEcCCCC----eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe
Confidence             5533   223356777762    5788899999999999864 444421      11122222 334467777777788


Q ss_pred             CCCeEEEEEccCCceeEE--EEc-----------CCcceEEEEeCCCCEEEEE-e-----------CCcEEEEEccccee
Q 019326          150 RDDCLAMVNLVRGRRSFY--HKI-----------GKEASLIKFDGSGEKFFMV-T-----------EEKVGIHQAEDAKL  204 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~-~-----------~~~i~~~d~~~~~~  204 (343)
                      .++.+.++|+........  ...           +.....++++|++..++++ .           .+.+.+||+.+++.
T Consensus       219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~  298 (361)
T 2oiz_A          219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR  298 (361)
T ss_dssp             TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred             CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence            899999999976543221  111           1112237899999988877 4           24799999999999


Q ss_pred             EEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC--ceeEEecccccccEEEEEEEecCC
Q 019326          205 LCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG--KVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       205 ~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +..+.... +..++++ ++++|++++. +.|.+||..++  +.+.++. .+......++++|++.
T Consensus       299 v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          299 VARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             EEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            99998555 8999998 4678888776 99999999999  9998886 6788889999998864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=5.5e-15  Score=119.49  Aligned_cols=234  Identities=12%  Similarity=0.014  Sum_probs=162.4

Q ss_pred             CeEEEEec--CceEE-EeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           44 PITTVAVS--GTAAA-SGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        44 ~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ...+++++  +++++ +...++.|.+|+..+.......... ...+.++++.+++     +++++.. ++.|.+||..+.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g-----~l~v~~~-~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAG-----TVYVTDF-NNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCS-CCSCCCEEECTTC-----CEEEEET-TTEEEEECTTCS
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCC-cCCcceeEECCCC-----CEEEEcC-CCEEEEEeCCCc
Confidence            67889997  66555 4467889999998765433222223 3578899999988     5555544 889999998765


Q ss_pred             ceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          121 VLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       121 ~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      .. ..+. .....+..++++++++++++...++.|.+|+..+......... ...+..++++++++.+++. .++.|.+|
T Consensus        98 ~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B           98 NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence            43 2232 2235789999999999887777789999997655543322111 2457789999999876666 67899999


Q ss_pred             EcccceeEEEec-CCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCe
Q 019326          198 QAEDAKLLCELD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       198 d~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      +........... +...+..++++++ .++++...++.|.+||....... .....+...+.++++.+++.         
T Consensus       177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~---------  246 (270)
T 1rwi_B          177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRT---------  246 (270)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCC---------
T ss_pred             ecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCC---------
Confidence            988766543322 3366788898754 45555556889999998755433 33313446789999988876         


Q ss_pred             EEEEEcCCCcEEEEeccCcc
Q 019326          276 LVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       276 ~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++++...++.|+++++...+
T Consensus       247 l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          247 VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEEGGGTEEEEECCCGGG
T ss_pred             EEEEECCCCEEEEEcCCCcc
Confidence            88899999999999998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=9.7e-15  Score=119.79  Aligned_cols=231  Identities=12%  Similarity=0.030  Sum_probs=164.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCc-eEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPR-NLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      ..+..+..+ .....+++|+|++     + +++++..++.|..||..++  ...+..+...+.+++++|+++++++...+
T Consensus        18 ~~~~~l~~~-~~~~eg~~~d~~g-----~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~   89 (296)
T 3e5z_A           18 AEARRLADG-FTWTEGPVYVPAR-----SAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGL   89 (296)
T ss_dssp             CCCEEEECC-CSSEEEEEEEGGG-----TEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTT
T ss_pred             CcEEEEecC-CccccCCeEeCCC-----CEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCC
Confidence            334445455 5678899999998     5 7888889999999999886  66666677789999999999988877777


Q ss_pred             CeEEEEEccCCceeEEEEc-----CCcceEEEEeCCCCEEEEEe------------------CCcEEEEEcccceeEEEe
Q 019326          152 DCLAMVNLVRGRRSFYHKI-----GKEASLIKFDGSGEKFFMVT------------------EEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------~~~i~~~d~~~~~~~~~~  208 (343)
                      +.|.+||..+++.......     ...+..++++|+|+++++..                  .+.|..++.. ++.....
T Consensus        90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (296)
T 3e5z_A           90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI  168 (296)
T ss_dssp             TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred             CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence            9999999988875443221     13456799999999888631                  2356666655 5544444


Q ss_pred             cCCcceEEeeecC-CCeEEEEeCCCcEEEEECC-CCce---eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          209 DGKKRILCAAPGE-NGVLFTGGEDRSITAWDTN-SGKV---AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       209 ~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      .+......+++++ ++.+++.+.++.|.+||+. +++.   ...+. .+...+.++++.+++.         ++++.  +
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~~i~~d~~G~---------l~v~~--~  236 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT-VEPGKTDGLRVDAGGL---------IWASA--G  236 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC-CSSSCCCSEEEBTTSC---------EEEEE--T
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee-CCCCCCCeEEECCCCC---------EEEEc--C
Confidence            4566678899984 5666777778999999987 5554   33342 4566677889988875         66555  8


Q ss_pred             CcEEEEeccCccccCCCcccccccccceeEEEc-CCCCceeccccCCC
Q 019326          284 GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAG-SSTKSFKRPQIGDS  330 (343)
Q Consensus       284 g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~~~~~~~~~  330 (343)
                      +.|.+||.+. .     .+..+.....+.++++ +++++.+.....++
T Consensus       237 ~~v~~~~~~g-~-----~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          237 DGVHVLTPDG-D-----ELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             TEEEEECTTS-C-----EEEEEECSSCCCEEEEESTTSCEEEEEETTE
T ss_pred             CeEEEECCCC-C-----EEEEEECCCCceeEEEECCCCCEEEEEcCCe
Confidence            8999999863 2     1222222222888888 68888777666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=4.2e-13  Score=109.91  Aligned_cols=266  Identities=12%  Similarity=0.077  Sum_probs=181.5

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEe-ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAI-HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +..+...+.+++++  ++.+++...++.|.+||.. ++..... ... ...+.++++.+++     .++++...++.|..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~-~~~~~~i~~~~~g-----~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP-DAKVMCLTISSDG-----EVWFTENAANKIGR   82 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST-TCCEEEEEECTTS-----CEEEEETTTTEEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc-cCceeeEEECCCC-----CEEEeCCCCCeEEE
Confidence            34556789999998  5555555557899999988 5443322 223 5779999999988     56666666889999


Q ss_pred             EECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-
Q 019326          115 FDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       115 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      ||... + ...+.  .....+..+++.++++++++...++.|..||. +++......  ....+..+++++++..+++. 
T Consensus        83 ~~~~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           83 ITKKG-I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             ECTTS-C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             ECCCC-c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC
Confidence            99863 3 22332  23457899999999988887777889999998 555432221  12557889999999887777 


Q ss_pred             eCCcEEEEEcccceeEEE-ec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          190 TEEKVGIHQAEDAKLLCE-LD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~-~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      .++.+..||. +++.... .. ....+..+++++ +.+.++...++.|.+||. +++........+...+.++++.+++.
T Consensus       160 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~  237 (299)
T 2z2n_A          160 QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID  237 (299)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC
Confidence            6789999998 6655432 22 345577888875 455455455789999999 66643321213556789999988875


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCC
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                               ++++...++.|..||.. +.. .  .+........+.++++ +++.+.+.....
T Consensus       238 ---------l~v~~~~~~~i~~~d~~-g~~-~--~~~~~~~~~~~~~i~~-~~g~l~v~~~~~  286 (299)
T 2z2n_A          238 ---------LWFTEWGANKIGRLTSN-NII-E--EYPIQIKSAEPHGICF-DGETIWFAMECD  286 (299)
T ss_dssp             ---------EEEEETTTTEEEEEETT-TEE-E--EEECSSSSCCEEEEEE-CSSCEEEEETTT
T ss_pred             ---------EEEeccCCceEEEECCC-Cce-E--EEeCCCCCCccceEEe-cCCCEEEEecCC
Confidence                     77776678899999984 321 1  1101112346888999 888877665433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=8.6e-16  Score=140.90  Aligned_cols=239  Identities=8%  Similarity=-0.018  Sum_probs=164.3

Q ss_pred             CCCCCeEEEEec--CceEE-----EeeCCCeEEEEEcCCCeee-eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           40 AHLSPITTVAVS--GTAAA-----SGGTDDTIHLYDLSTSSSL-GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~-----s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      +|...+.+++|+  |++||     .|+.+..|++||+.+++.+ .... . ......++|+|++     +.|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~-~~~~~~~~wspDg-----~~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-E-GGKYATPKWTPDS-----KGFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-S-CCTTCCCEECTTS-----SEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-C-cccccceEEecCC-----CEEEEEEecCC
Confidence            466678899999  78888     5555678999999998865 2111 1 1222689999999     78888888776


Q ss_pred             -------------EEEEECCCcc----eeeeeeeccccEEEEEEecCCCEEEEEeCCC----eEEEEEccCCceeEEEEc
Q 019326          112 -------------VSIFDADPFV----LLTSVKVHKKGVNDLAVHHSGKLALTVGRDD----CLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       112 -------------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~  170 (343)
                                   |++|++.+++    ++.....+...+..+.|+|+|++|+..+.++    .|.+|+..+++.......
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~  270 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG  270 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence                         9999998765    3333334556788999999999988887666    677777655554444444


Q ss_pred             CCcceEEEEeCCCCEEEEEe----CCcEEEEEccccee---EEEecC--CcceEEeeecCCCeEEEEeCCCcEEEEECC-
Q 019326          171 GKEASLIKFDGSGEKFFMVT----EEKVGIHQAEDAKL---LCELDG--KKRILCAAPGENGVLFTGGEDRSITAWDTN-  240 (343)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~---~~~~~~--~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~-  240 (343)
                      ........+ +++..++...    ++.|.+||+.++..   ...+.+  ...+..+.++++.++++...|+..++|.+. 
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence            444555555 5555434333    47899999987653   333333  445778888777788888999988887654 


Q ss_pred             CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE-E---EcCCCcEEEEeccCcc
Q 019326          241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA-S---ASSDGVICVWDVRMAI  295 (343)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s---~~~dg~i~vwd~~~~~  295 (343)
                      +++....+...+...+..+.+++++.         .++ +   ....++|++||+.++.
T Consensus       350 ~g~~~~~l~~~~~~~v~~~~~s~d~~---------~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          350 KGKPVRTVQLPGVGAASNLMGLEDLD---------DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TCCEEEECCCSSSSEECCCBSCTTCS---------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCeeEEecCCCCeEEEEeecCCCCC---------EEEEEEcCCCCCCEEEEEECCCCc
Confidence            46666666622366777777777654         455 2   2345789999998763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=1.5e-13  Score=121.75  Aligned_cols=258  Identities=13%  Similarity=0.076  Sum_probs=181.0

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC--Ccceeeeeeec
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--PFVLLTSVKVH  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~  129 (343)
                      +.++++...++.|.++|..+++.+..+...  ..+..+.|+|++     +++++++.|+.|.+||+.  +++.+.++...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDG-----r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCC-----CEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence            446667778899999999999999888765  567899999999     899999999999999995  77888877753


Q ss_pred             cccEEEEEEe----cCCCEEEEEeC-CCeEEEEEccCCceeEEEEcC------------CcceEEEEeCCCCEEEEE--e
Q 019326          130 KKGVNDLAVH----HSGKLALTVGR-DDCLAMVNLVRGRRSFYHKIG------------KEASLIKFDGSGEKFFMV--T  190 (343)
Q Consensus       130 ~~~v~~i~~~----~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~  190 (343)
                      . ....++|+    |+|++++++.. ++++.++|..+.+.+......            ..+..+..++++..++..  .
T Consensus       240 ~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          240 S-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             S-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             C-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            3 46789999    69988887765 599999999999887765542            145678888887776666  6


Q ss_pred             CCcEEEEEccccee--EEEecCCcceEEeeec-CCCeEEE-EeCCCcEEEEECCCCceeEEecc----cccccEEEEE-E
Q 019326          191 EEKVGIHQAEDAKL--LCELDGKKRILCAAPG-ENGVLFT-GGEDRSITAWDTNSGKVAYCIED----AHSARVKGIV-V  261 (343)
Q Consensus       191 ~~~i~~~d~~~~~~--~~~~~~~~~i~~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~----~h~~~v~~~~-~  261 (343)
                      .+.|.++|..+.+.  +..+........+.|+ +++++++ ...++.|.++|..+++.+..+..    .|.+.  ... +
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~  396 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFV  396 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEE
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeE
Confidence            79999999877543  3334444556677887 4566554 44678999999999988777762    23221  222 4


Q ss_pred             EecCCCCCCCCCCeEEEEEc-CCCcEEEEeccCccccC--CCcccccccc-cceeEEEcCCCCceecccc
Q 019326          262 LTKNDGGSTAENPYLVASAS-SDGVICVWDVRMAIKEK--PLPLAEAKTN-SRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~--~~~~~~~~~~-~~i~~~~~s~~~~~~~~~~  327 (343)
                      +|++.        ..++++. .++.|.++|..+.....  ...+...... ..-..+..+|+++++....
T Consensus       397 ~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          397 HPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             ETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             CCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            55432        1455553 56899999998732100  0111222221 2223467788887766544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=1.6e-15  Score=129.52  Aligned_cols=226  Identities=10%  Similarity=-0.072  Sum_probs=148.5

Q ss_pred             EEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEE-------------------EEEeCCCCCCCCceEEE
Q 019326           47 TVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTS-------------------LAFYTPQNLSVPRNLFS  105 (343)
Q Consensus        47 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~~~~~~l~s  105 (343)
                      .+.|+  ++.|+.++.++.|++||+.+++.......+ ......                   +.|+|++     +.++.
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-----~~~~~  158 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-----SWEKF  158 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-----SHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCC-----cceee
Confidence            36777  889999999999999999988766555544 332222                   2456666     44443


Q ss_pred             e-----eCCCeEEEEECCCcceeeeeeeccccEEEEEEec-CCCEEEEEeCC------CeEEEEEccCCceeEEEEc--C
Q 019326          106 T-----SADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH-SGKLALTVGRD------DCLAMVNLVRGRRSFYHKI--G  171 (343)
Q Consensus       106 ~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~--~  171 (343)
                      +     ..+..|++||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.......  .
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  237 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEG  237 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTT
T ss_pred             eeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCC
Confidence            3     35678999999887755444 4677889999999 78777766543      3688889876653322221  1


Q ss_pred             CcceEEEEeCCCCEEEEE-eC-----CcEEEEEcccceeEEEecCCcceEEeeecC--CCeEEEEe--------------
Q 019326          172 KEASLIKFDGSGEKFFMV-TE-----EKVGIHQAEDAKLLCELDGKKRILCAAPGE--NGVLFTGG--------------  229 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~~-----~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~--~~~l~~~~--------------  229 (343)
                      ..+..+.|+|+++.++.. .+     +.|.+||+.+++......... .. ..|++  +++++.++              
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------C
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence            246678999999987766 33     349999998876544333222 22 66664  45666543              


Q ss_pred             --CCCcEEEEECCCCceeEEecccccc-----------cEEEEEEEecCCCCCCCCCCeEEEEEc-CCCcEEEEecc
Q 019326          230 --EDRSITAWDTNSGKVAYCIEDAHSA-----------RVKGIVVLTKNDGGSTAENPYLVASAS-SDGVICVWDVR  292 (343)
Q Consensus       230 --~dg~i~i~d~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~  292 (343)
                        .++.|++||+.+++.. .+. .+..           .+..+.|+|++.         .|+.++ .++...+|.++
T Consensus       316 ~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          316 IENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDD---------GVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSS---------EEEEEECTTSSCEEEEEE
T ss_pred             cCCCCcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCC---------eEEEEecCCCCceEEEEE
Confidence              3478999999887643 344 3433           245677887776         666655 45666666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.69  E-value=2.3e-14  Score=119.50  Aligned_cols=274  Identities=12%  Similarity=0.072  Sum_probs=182.1

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeeee
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSLG   76 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~   76 (343)
                      ++.|.++|..+            .+.+..+..-..+ . ++++  +++++++.          .++.|.+||..+++.+.
T Consensus        58 ~~~V~ViD~~t------------~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~  123 (386)
T 3sjl_D           58 VTQQFVIDGEA------------GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA  123 (386)
T ss_dssp             SEEEEEEETTT------------TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEECCC------------CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE
Confidence            57899999877            3334444433444 3 8888  77777765          36789999999999888


Q ss_pred             EeccCC------CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEE
Q 019326           77 AIHHHE------SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV  148 (343)
Q Consensus        77 ~~~~~~------~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  148 (343)
                      .+....      ......++|+|++     ++++++..  ++.|.++|+.+++.+.++....  . ...+....+.+++.
T Consensus       124 ~I~v~~g~r~~~g~~P~~~a~spDG-----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          124 DIELPDAPRFLVGTYPWMTSLTPDG-----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMH  195 (386)
T ss_dssp             EEEETTCCCCCBSCCGGGEEECTTS-----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEE
T ss_pred             EEECCCccccccCCCCceEEEcCCC-----CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEE
Confidence            875320      1245679999999     77777764  6899999999999998886422  1 22233344677788


Q ss_pred             eCCCeEEEEEccC-CceeEEEEcC-----Ccc-eEEEEe-CCCCEEEEEeCCcEEEEEcccce--eEEEec---------
Q 019326          149 GRDDCLAMVNLVR-GRRSFYHKIG-----KEA-SLIKFD-GSGEKFFMVTEEKVGIHQAEDAK--LLCELD---------  209 (343)
Q Consensus       149 ~~d~~i~~wd~~~-~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~---------  209 (343)
                      +.||.+.+.++.+ ++........     .++ ....|. ++|++++...++.+.+.|..+..  ....+.         
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~  275 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD  275 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccc
Confidence            8899999999876 5542211110     111 113554 67777776688999999997654  333221         


Q ss_pred             --CCcceEEeeec-CCCeEEEEeC----------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          210 --GKKRILCAAPG-ENGVLFTGGE----------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       210 --~~~~i~~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                        .......+.++ +++.++....          .+.|.++|+.+++.+..+.  -...+.+|++++++..        +
T Consensus       276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~--vg~~~~~lavs~D~~~--------~  345 (386)
T 3sjl_D          276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKP--------L  345 (386)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECSSSSC--------E
T ss_pred             cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE--CCCCcceEEECCCCCe--------E
Confidence              01122234444 4555555432          2579999999999999998  3447889999998742        4


Q ss_pred             EEE-EcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCC
Q 019326          277 VAS-ASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       277 l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      |++ ...++.|.++|..+++     .+......+..+.|.+++|
T Consensus       346 ly~tn~~~~~VsViD~~t~k-----~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          346 LYALSTGDKTLYIHDAESGE-----ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEETTTTEEEEEETTTCC-----EEEEECCCCSSCCEEEECC
T ss_pred             EEEEcCCCCeEEEEECCCCc-----EEEEecCCCCCceeEECCc
Confidence            554 5668999999999875     3334444455556666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=2e-12  Score=105.83  Aligned_cols=232  Identities=9%  Similarity=0.013  Sum_probs=157.5

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee-eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL-GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      .+...+.+++++  +..+++...++.|..||.. ++.. ..+... ...+..+++.+++     .++++...++.|..||
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-~~~~~~i~~~~~g-----~l~v~~~~~~~i~~~d  126 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNP-DSAPYGITEGPNG-----DIWFTEMNGNRIGRIT  126 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-TCCEEEEEECTTS-----CEEEEETTTTEEEEEC
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCc-CCCceeeEECCCC-----CEEEEecCCceEEEEC
Confidence            345778999997  6666665667889999986 4322 122223 5678999999988     5666666788999999


Q ss_pred             CCCcceeee-eeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE--cCCcceEEEEeCCCCEEEEE-eCC
Q 019326          117 ADPFVLLTS-VKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TEE  192 (343)
Q Consensus       117 ~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~  192 (343)
                      . +++.... ...+...+..+++.++++.+++...++.|..||. +++......  ....+..+++++++..+++. .++
T Consensus       127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  204 (299)
T 2z2n_A          127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN  204 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred             C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence            8 4443322 2223457899999999988877777889999998 665443211  12457789999999877766 578


Q ss_pred             cEEEEEcccceeEEE-ec-CCcceEEeeecCCCeEEEE-eCCCcEEEEECCCCceeEEec-ccccccEEEEEEEecCCCC
Q 019326          193 KVGIHQAEDAKLLCE-LD-GKKRILCAAPGENGVLFTG-GEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       193 ~i~~~d~~~~~~~~~-~~-~~~~i~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~  268 (343)
                      .+.+|+. +++.... .. ....+.++++++++.++.+ ..++.|..||. +++ +..+. ..+...+.++++ +++.  
T Consensus       205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~--  278 (299)
T 2z2n_A          205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGET--  278 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSC--
T ss_pred             eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCC--
Confidence            9999999 6654332 22 3466888988754444444 46789999998 454 33332 145567899999 7665  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          269 STAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                             ++++.+ .+.|..++.++.
T Consensus       279 -------l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          279 -------IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             -------EEEEET-TTEEEEEEEC--
T ss_pred             -------EEEEec-CCcEEEEEcCcc
Confidence                   555544 567777787654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=3.2e-13  Score=111.58  Aligned_cols=236  Identities=13%  Similarity=0.086  Sum_probs=163.1

Q ss_pred             CCCCCeEEEEec--CceEEE-------eeCCCeEEEEEcCCCeeeeEec----cCCCCCeEEEEEeCC-CCCCCCceEEE
Q 019326           40 AHLSPITTVAVS--GTAAAS-------GGTDDTIHLYDLSTSSSLGAIH----HHESSSVTSLAFYTP-QNLSVPRNLFS  105 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~~~~~-~~~~~~~~l~s  105 (343)
                      ..-....+++|+  +.++++       +..++.|.+||..+++......    ++ ...+.++++.++ +      .|+.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~g------~l~v   87 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY-GGIPAGCQCDRDAN------QLFV   87 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE-ECCEEEEEECSSSS------EEEE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCC-CCCCceEEEecCCC------cEEE
Confidence            344567889998  666666       5778999999988776543222    13 467899999998 6      4455


Q ss_pred             eeCCCeEEEEECCCcceeee-eee----ccccEEEEEEecCCCEEEEEeCC---------------CeEEEEEccCCcee
Q 019326          106 TSADGFVSIFDADPFVLLTS-VKV----HKKGVNDLAVHHSGKLALTVGRD---------------DCLAMVNLVRGRRS  165 (343)
Q Consensus       106 ~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~~~~~d---------------~~i~~wd~~~~~~~  165 (343)
                      ++..+.|.+||.+ ++.... ...    ....+.+++++++++++++...+               +.|..+|.. ++..
T Consensus        88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (314)
T 1pjx_A           88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred             EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence            5545589999988 654332 221    12357899999999887776654               567777765 5544


Q ss_pred             EEEEcCCcceEEEEe----CCCCEEEEE--eCCcEEEEEcc-ccee-----EEEecCC--cceEEeeecC-CCeEEEEeC
Q 019326          166 FYHKIGKEASLIKFD----GSGEKFFMV--TEEKVGIHQAE-DAKL-----LCELDGK--KRILCAAPGE-NGVLFTGGE  230 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~i~~~d~~-~~~~-----~~~~~~~--~~i~~~~~~~-~~~l~~~~~  230 (343)
                      ........+..++++    |+++.++++  .++.|.+|+.. +++.     ...+...  ..+..+++++ ++++++...
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            333333556789999    999766665  57899999986 3432     2222222  5577888874 555555557


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE-EEcCCCcEEEEeccCc
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA-SASSDGVICVWDVRMA  294 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~  294 (343)
                      ++.|.+||..+++.+..+. .+...+.++++++++.         .|+ +...++.|..|++...
T Consensus       246 ~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~---------~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTK---------TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSS---------EEEEEETTTTEEEEEECSSC
T ss_pred             CCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCC---------EEEEEeCCCCeEEEEeCCCC
Confidence            8899999998788777776 6667899999977765         454 5556789999998753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.68  E-value=1e-13  Score=117.76  Aligned_cols=261  Identities=10%  Similarity=0.098  Sum_probs=173.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCC-------CCCe-EEEEecCceEEEeeCCCeEEEEEcCCCe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAH-------LSPI-TTVAVSGTAAASGGTDDTIHLYDLSTSS   73 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~   73 (343)
                      +|++++.++.|..||..+       ++..-..   .+...       ...+ ..+...+..++.++.++.|..+|..+++
T Consensus        55 ~v~~~~~~g~v~a~d~~t-------G~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADD-------GKEIWSV---SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEE---ECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEcCCCeEEEEEccC-------Cceeeee---cCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            467888889999999876       3222111   11110       2233 3344458888999999999999999999


Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccE-----EEEEEecCCCEEEEE
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGV-----NDLAVHHSGKLALTV  148 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~  148 (343)
                      .+...... .......... +      ..++.++.++.|..+|..+++.+..........     ......  +..++.+
T Consensus       125 ~~W~~~~~-~~~~~~p~~~-~------~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g  194 (376)
T 3q7m_A          125 VAWQTKVA-GEALSRPVVS-D------GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG  194 (376)
T ss_dssp             EEEEEECS-SCCCSCCEEE-T------TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred             EEEEEeCC-CceEcCCEEE-C------CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence            98877654 2222222222 3      378888999999999999999888776432211     112222  3477888


Q ss_pred             eCCCeEEEEEccCCceeEEEEcCCcceE--------EEEeC--CCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEe
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIGKEASL--------IKFDG--SGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCA  217 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~  217 (343)
                      ..++.+..+|..+++.........+...        +...|  .+..++++ .++.+..+|..+++.+....... ...+
T Consensus       195 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~  273 (376)
T 3q7m_A          195 GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDF  273 (376)
T ss_dssp             CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEE
T ss_pred             cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCc
Confidence            8899999999999998777665422100        00111  24555555 78999999999999887766433 3344


Q ss_pred             eecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       218 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      .. .++.++.++.++.|..+|..+++.+..........+......  +.         .|+.++.+|.|.++|..+++
T Consensus       274 ~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~---------~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          274 IV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NG---------NLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TT---------EEEEECTTSEEEEEETTTCC
T ss_pred             eE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CC---------EEEEEeCCCeEEEEECCCCc
Confidence            44 466788888899999999999998877652222223333332  22         78999999999999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=3.3e-14  Score=114.92  Aligned_cols=236  Identities=11%  Similarity=-0.005  Sum_probs=160.1

Q ss_pred             CeEEEEEeCCCCCCCCceEE-EeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326           85 SVTSLAFYTPQNLSVPRNLF-STSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      ...++++.+++     ++++ +...++.|.+||..+.........+...+.+++++++++++++.. ++.|..||.....
T Consensus        25 ~p~~i~~~~~g-----~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAG-----NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTC-----CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCC-----CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce
Confidence            78899999998     6666 446789999999866443222222334678899999998666655 8899999987654


Q ss_pred             eeEEEEcC-CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEEC
Q 019326          164 RSFYHKIG-KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~  239 (343)
                      ........ ..+..++++++++.+++. .++.|.+|+..+........ ....+..+++++ ++++++...++.|.+||.
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence            32221112 567889999999877776 67889999765544332221 234567788874 555555566789999998


Q ss_pred             CCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCC
Q 019326          240 NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      .......... .+...+.++++.+++.         ++++...++.|.+|+.......    .........+.+++++++
T Consensus       179 ~~~~~~~~~~-~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          179 ESNNQVVLPF-TDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTST----VLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             TTCCEEECCC-SSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCE----ECCCCSCSCEEEEEECTT
T ss_pred             CCCceEeecc-cCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcce----eeccCCCCCceeEEECCC
Confidence            8765443333 3446788999988775         7888888899999998764211    111112245889999999


Q ss_pred             CceeccccCCCCCCCccccCc
Q 019326          320 KSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      +.+.+....++.+...+..+.
T Consensus       245 g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          245 RTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCEEEEEGGGTEEEEECCCGG
T ss_pred             CCEEEEECCCCEEEEEcCCCc
Confidence            998888888887666555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=2.2e-13  Score=125.32  Aligned_cols=221  Identities=11%  Similarity=0.029  Sum_probs=146.0

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCC-----eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCe-----
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADG-----FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC-----  153 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-----  153 (343)
                      ..+..++|+|++     ++|+.+..++     .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.     
T Consensus       125 ~~~~~~~~SPDg-----~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          125 VALRGYAFSEDG-----EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEEEECTTS-----SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             EEEEEEEECCCC-----CEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence            468899999999     6777665533     8999999998876543322 23677999999999999888766     


Q ss_pred             -----------EEEEEccCCcee--EEEEc---CCcceEEEEeCCCCEEEEE-e-----CCcEEEEEccc------ce-e
Q 019326          154 -----------LAMVNLVRGRRS--FYHKI---GKEASLIKFDGSGEKFFMV-T-----EEKVGIHQAED------AK-L  204 (343)
Q Consensus       154 -----------i~~wd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-~-----~~~i~~~d~~~------~~-~  204 (343)
                                 |++|++.+++..  .....   ......+.|+|++++++.. .     +..+.+||+.+      +. .
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                       999999887632  22222   2335689999999998887 4     56899999987      42 2


Q ss_pred             EEEec-CCcceEEeeecCCCeEEEEeC----CCcEEEEECCCCc--eeEEecccccc--cEEEEEEEecCCCCCCCCCCe
Q 019326          205 LCELD-GKKRILCAAPGENGVLFTGGE----DRSITAWDTNSGK--VAYCIEDAHSA--RVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       205 ~~~~~-~~~~i~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      ...+. +...+......+++.|+..+.    .+.|.+||+.++.  ....+. .|..  .+..+.+++.+.         
T Consensus       279 ~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~---------  348 (710)
T 2xdw_A          279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNF---------  348 (710)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTTE---------
T ss_pred             eEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCCE---------
Confidence            33443 444444432235665554443    2369999998774  234554 4443  688888885544         


Q ss_pred             EEEEEcCCCc--EEEEeccCccccCCCcccccccccceeEEEcCCCCceec
Q 019326          276 LVASASSDGV--ICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       276 ~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~  324 (343)
                      ++++...|+.  |.+|++.++.......   .. ...+..+++++++..++
T Consensus       349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~---~~-~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          349 LVLCYLHDVKNTLQLHDLATGALLKIFP---LE-VGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEC---CC-SSEEEEEECCTTCSEEE
T ss_pred             EEEEEEECCEEEEEEEECCCCCEEEecC---CC-CceEEEEecCCCCCEEE
Confidence            8888888885  5556665543211111   12 34577788888775443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=1.4e-11  Score=100.86  Aligned_cols=264  Identities=13%  Similarity=0.074  Sum_probs=179.2

Q ss_pred             ecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE-eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           38 YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA-IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +......+.+++++  ++..++...++.|.+||.. ++.... +... ...+..+++.+++     .++++...++.|..
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~g-----~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP-DAKVMCLIVSSLG-----DIWFTENGANKIGK   87 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-TCCEEEEEECTTS-----CEEEEETTTTEEEE
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC-CCcceeEEECCCC-----CEEEEecCCCeEEE
Confidence            34456788999998  6666665568999999988 554432 2223 4678999999888     56666666789999


Q ss_pred             EECCCcceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-E-cCCcceEEEEeCCCCEEEEE-
Q 019326          115 FDADPFVLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-K-IGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       115 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      ||.. ++. ..+.  .....+.++++.++++++++...++.|..+|.. ++..... . ....+..++++++++.+++. 
T Consensus        88 ~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A           88 LSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             ECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             ECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec
Confidence            9987 444 2232  234578999999999888877778899999987 5543221 1 13567889999999966666 


Q ss_pred             eCCcEEEEEcccceeEEE-ec-CCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEE-ecccccccEEEEEEEecC
Q 019326          190 TEEKVGIHQAEDAKLLCE-LD-GKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYC-IEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~-~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~~~~  265 (343)
                      .++.|..++. +++.... .. ....+..++++++ ++.++....+.|.+||. +++.... +. .+...+.++++.+++
T Consensus       165 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          165 QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP-TPNARPHAITAGKNS  241 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS-STTCCEEEEEECSTT
T ss_pred             CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC-CCCCCceEEEECCCC
Confidence            5788999998 5554432 11 3345788888754 44444445678999998 4554433 33 355678899998887


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecccc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      .         ++++...++.|..||.. +...   ..........+.+++.++++.+.+...
T Consensus       242 ~---------l~v~~~~~~~i~~~~~~-g~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          242 E---------IWFTEWGANQIGRITND-NTIQ---EYQLQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             C---------EEEEETTTTEEEEECTT-SCEE---EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred             C---------EEEeccCCCeEEEECCC-CcEE---EEECCccCCccceeEeCCCCCEEEEcc
Confidence            6         77777677999999984 3211   110111234578899999988766654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=8.7e-14  Score=127.63  Aligned_cols=254  Identities=9%  Similarity=-0.030  Sum_probs=159.3

Q ss_pred             cCceEEEeeCCC-----eEEEEEcCCCeeeeEec------cCCCCCeEEEEEeCCCCCCCCceEE-----EeeCCCeEEE
Q 019326           51 SGTAAASGGTDD-----TIHLYDLSTSSSLGAIH------HHESSSVTSLAFYTPQNLSVPRNLF-----STSADGFVSI  114 (343)
Q Consensus        51 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~~~~~l~-----s~~~dg~i~i  114 (343)
                      .|++++....++     .|.+.+...++....+.      +| ...+..++|+|++     ++|+     .|+.+..|++
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~-~~~~~~~~~SPDG-----~~la~~~~~~G~~~~~i~v  151 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG-TVSLGTWAVSWDG-----KKVAFAQKPNAADEAVLHV  151 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS-CEEEEEEEECTTS-----SEEEEEEEETTCSCCEEEE
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC-CEEEEEEEECCCC-----CEEEEEECCCCCceEEEEE
Confidence            466666555433     24444444444333332      23 4468999999999     6777     4444578999


Q ss_pred             EECCCccee-eeeeeccccEEEEEEecCCCEEEEEeCCCe-------------EEEEEccCCce--eEEEEc---CCcce
Q 019326          115 FDADPFVLL-TSVKVHKKGVNDLAVHHSGKLALTVGRDDC-------------LAMVNLVRGRR--SFYHKI---GKEAS  175 (343)
Q Consensus       115 wd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-------------i~~wd~~~~~~--~~~~~~---~~~~~  175 (343)
                      ||+.+++.+ .... .......++|+|||+.|+.++.|..             |++|++.+++.  ......   ...+.
T Consensus       152 ~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          152 IDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             EETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             EECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            999998765 2111 1111267899999999999988776             99999988762  222222   23577


Q ss_pred             EEEEeCCCCEEEEE-eCC----cEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEe---CCCcEEEEECCCCce--e
Q 019326          176 LIKFDGSGEKFFMV-TEE----KVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGG---EDRSITAWDTNSGKV--A  245 (343)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~----~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~  245 (343)
                      .+.|+|+|++++.. .++    .+.+++..+++......+...+....++++++++...   .++.|.+||+.+++.  .
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            89999999998887 554    5667766555544444455455555555666444433   258899999987753  2


Q ss_pred             EEecccc-cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC-ccccCCCcccccccccceeEEEcCCCCcee
Q 019326          246 YCIEDAH-SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM-AIKEKPLPLAEAKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       246 ~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~  323 (343)
                      ..+...+ ...+..++++ ++.         ++++...|+..+||.+.. +......   .......+..+++++++..+
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~---------lv~~~~~dg~~~l~~~~~~g~~~~~l---~~~~~~~v~~~~~s~d~~~l  377 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGH---------LSLEYLKDATSEVRVATLKGKPVRTV---QLPGVGAASNLMGLEDLDDA  377 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTE---------EEEEEEETTEEEEEEEETTCCEEEEC---CCSSSSEECCCBSCTTCSEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCE---------EEEEEEECCEEEEEEEeCCCCeeEEe---cCCCCeEEEEeecCCCCCEE
Confidence            3343133 4567888887 433         888999999999887652 2211111   11223346667777766544


Q ss_pred             c
Q 019326          324 R  324 (343)
Q Consensus       324 ~  324 (343)
                      +
T Consensus       378 ~  378 (695)
T 2bkl_A          378 Y  378 (695)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=3.1e-12  Score=107.93  Aligned_cols=258  Identities=9%  Similarity=0.007  Sum_probs=166.9

Q ss_pred             CceEEEeeC--CC---eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----------CCCeEEEEE
Q 019326           52 GTAAASGGT--DD---TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----------ADGFVSIFD  116 (343)
Q Consensus        52 ~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd  116 (343)
                      +.++++...  ..   .|.++|..+++.+..+... ..+  .++++|++     ++++.+.          .++.|.+||
T Consensus        32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg-----~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSG-----SEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCC-----CEEEEEeccccccccCCCCCeEEEEE
Confidence            555555543  22   8899999999998888765 444  99999999     6777775          367899999


Q ss_pred             CCCcceeeeeeec-------cccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEE-EEcCCcceEEEEeCCCCEE
Q 019326          117 ADPFVLLTSVKVH-------KKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFY-HKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       117 ~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (343)
                      ..+.+.+..+...       ......++|+|+|++|+++..  ++.|.++| .+++.+.. ...+..   +.+.|.+...
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~  179 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPST  179 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCce
Confidence            9988888776532       123457999999999998874  57899999 99887666 554433   4455655433


Q ss_pred             -EEE-eCCcEEEEEcccceeEEEec------CCcce-EEeeec-CCCeEEEEeCCCcEEEEECCCCc--eeEEecccc--
Q 019326          187 -FMV-TEEKVGIHQAEDAKLLCELD------GKKRI-LCAAPG-ENGVLFTGGEDRSITAWDTNSGK--VAYCIEDAH--  252 (343)
Q Consensus       187 -~~~-~~~~i~~~d~~~~~~~~~~~------~~~~i-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~h--  252 (343)
                       ++. .++.+.+++. +++......      ...++ ....+. +++.++..+..+.+.+.|+....  .+..+. ..  
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~-~~~~  257 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID-ALSG  257 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee-ecCC
Confidence             333 8999999999 777663322      11221 112222 23333333367899999997553  222222 11  


Q ss_pred             --------cccEEEEEEEecCCCCCCCCCCeEEEEEcC----------CCcEEEEeccCccccCCCcccccccccceeEE
Q 019326          253 --------SARVKGIVVLTKNDGGSTAENPYLVASASS----------DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCL  314 (343)
Q Consensus       253 --------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~  314 (343)
                              ......+.+++++.         .++.+..          ++.|.+.|+.+.+...     .+.......++
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~---------~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~-----~i~~g~~p~~i  323 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSD---------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-----QISLGHDVDAI  323 (373)
T ss_pred             cccccceecCceEeEEECCCCC---------EEEEEeccCCcccccCCCCeEEEEECCCCEEEE-----EEECCCCcCeE
Confidence                    12233466666655         5555432          3579999998875333     33444568899


Q ss_pred             EcCCCCc-eecccc-CCCCCCCccc
Q 019326          315 AGSSTKS-FKRPQI-GDSAPKGEEK  337 (343)
Q Consensus       315 ~~s~~~~-~~~~~~-~~~~~~~~~~  337 (343)
                      ++++|++ +++... .++.+...+.
T Consensus       324 ~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          324 SVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EECCCCCeEEEEEcCCCCeEEEEEC
Confidence            9999998 555544 4555544443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.61  E-value=6.4e-13  Score=112.76  Aligned_cols=254  Identities=10%  Similarity=0.135  Sum_probs=167.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      ++++++.++.|..+|..+       ++..     ................+..++.++.++.|..+|..+++.+..+...
T Consensus       105 ~v~v~~~~g~l~a~d~~t-------G~~~-----W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSD-------GTVA-----WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             EEEEEETTSEEEEEETTT-------CCEE-----EEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCC-------CCEE-----EEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            467888899999999876       3221     1222221111122334778888999999999999999988887654


Q ss_pred             CCCCe-----EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecccc-------EEEEEEec--CCCEEEE
Q 019326           82 ESSSV-----TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKG-------VNDLAVHH--SGKLALT  147 (343)
Q Consensus        82 ~~~~v-----~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------v~~i~~~~--~~~~l~~  147 (343)
                       ....     ...... +      ..++.++.++.|..+|..+++.+.........       +..+...|  .+..++.
T Consensus       173 -~~~~~~~~~~~~~~~-~------~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~  244 (376)
T 3q7m_A          173 -MPSLSLRGESAPTTA-F------GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA  244 (376)
T ss_dssp             -C-----CCCCCCEEE-T------TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred             -CCceeecCCCCcEEE-C------CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence             2111     122222 2      36888899999999999999888776532110       00011111  2457788


Q ss_pred             EeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-C-CcceEEeeecCCCe
Q 019326          148 VGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-G-KKRILCAAPGENGV  224 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~-~~~i~~~~~~~~~~  224 (343)
                      ++.++.+..+|.++++......... ...+..  ++..++++ .++.+..+|..+++.+.... . ...+..... .++.
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~  320 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGN  320 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTE
T ss_pred             EecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCE
Confidence            8889999999999999876655433 233333  35555555 78899999999999887765 2 222222233 3578


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ++.++.+|.|+++|..+++.+.... .....+.......++          .|+.++.||.|..|+
T Consensus       321 l~v~~~~g~l~~~d~~tG~~~~~~~-~~~~~~~~~~~~~~~----------~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          321 LVVGDSEGYLHWINVEDGRFVAQQK-VDSSGFQTEPVAADG----------KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEE-CCTTCBCSCCEEETT----------EEEEEBTTSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEe-cCCCcceeCCEEECC----------EEEEEeCCCEEEEEe
Confidence            8889999999999999999988877 323333322222233          788999999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.61  E-value=7.6e-13  Score=120.57  Aligned_cols=266  Identities=13%  Similarity=0.135  Sum_probs=173.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCC----------Ce-EEEEecCceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLS----------PI-TTVAVSGTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~v-~~l~~~~~~l~s~~~dg~i~iwd~~   70 (343)
                      .|++++.++.|+.+|..+       ++..     .++..+..          .+ ..+++.+..+++++.|+.|..+|..
T Consensus        72 ~vyv~~~~~~v~AlD~~t-------G~~~-----W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~  139 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARD-------GRLI-----WKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAK  139 (689)
T ss_dssp             EEEEECGGGCEEEEETTT-------CCEE-----EEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred             EEEEEcCCCeEEEEECCC-------Ccee-----EEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECC
Confidence            467788889999999877       3222     22211110          11 1234457789999999999999999


Q ss_pred             CCeeeeEeccC-CCCCeEEEEEeC---CCCCCCCceEEEee------CCCeEEEEECCCcceeeeeeecc----------
Q 019326           71 TSSSLGAIHHH-ESSSVTSLAFYT---PQNLSVPRNLFSTS------ADGFVSIFDADPFVLLTSVKVHK----------  130 (343)
Q Consensus        71 ~~~~~~~~~~~-~~~~v~~l~~~~---~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~----------  130 (343)
                      +|+.+..+... +......+...|   ++      .++.++      .+|.|+.||.++++.+..+....          
T Consensus       140 TG~~~W~~~~~~~~~~~~~~~~sP~v~~g------~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  213 (689)
T 1yiq_A          140 TGQRAWSVDTRADHKRSYTITGAPRVVNG------KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGK  213 (689)
T ss_dssp             TCCEEEEEECCSCTTSCCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSH
T ss_pred             CCCEeeeecCcCCCCCCccccCCcEEECC------EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccc
Confidence            99998887642 111111111111   33      455554      37899999999999988775210          


Q ss_pred             ---------------------ccEEEEEEecCCCEEEEEeCCCe-------------------EEEEEccCCceeEEEEc
Q 019326          131 ---------------------KGVNDLAVHHSGKLALTVGRDDC-------------------LAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       131 ---------------------~~v~~i~~~~~~~~l~~~~~d~~-------------------i~~wd~~~~~~~~~~~~  170 (343)
                                           .....++++|+...++.+..++.                   |..+|.++|+.+.....
T Consensus       214 ~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~  293 (689)
T 1yiq_A          214 GMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT  293 (689)
T ss_dssp             HHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             cccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence                                 01125788898889999888764                   99999999998877664


Q ss_pred             C-C---------cceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEecCCc--c---------------------
Q 019326          171 G-K---------EASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCELDGKK--R---------------------  213 (343)
Q Consensus       171 ~-~---------~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--~---------------------  213 (343)
                      . +         ++.......+++   .++.+ .+|.+.++|..+++.+...+...  .                     
T Consensus       294 ~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~  373 (689)
T 1yiq_A          294 TPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYW  373 (689)
T ss_dssp             STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTT
T ss_pred             CCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcccc
Confidence            2 1         112222233554   56666 78999999999999875433110  0                     


Q ss_pred             -----------------eEEeeecC-CCeEEEEeC---------------------------------------------
Q 019326          214 -----------------ILCAAPGE-NGVLFTGGE---------------------------------------------  230 (343)
Q Consensus       214 -----------------i~~~~~~~-~~~l~~~~~---------------------------------------------  230 (343)
                                       ...+++++ .+++++...                                             
T Consensus       374 ~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~  453 (689)
T 1yiq_A          374 KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW  453 (689)
T ss_dssp             TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTC
T ss_pred             CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCc
Confidence                             00134443 345554421                                             


Q ss_pred             CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          231 DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       231 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      +|.|+.||+.+++.+.++. .+ .++..-.+...+.         +++.++.||.|+.||.++++.
T Consensus       454 ~g~l~A~D~~tG~~~W~~~-~~-~~~~~g~~~tagg---------lvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVP-YV-TIFNGGTLSTAGN---------LVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEE-ES-SSCCCCEEEETTT---------EEEEECTTSEEEEEETTTCCE
T ss_pred             ceeEEEEECCCCCeEeEcc-CC-CCccCccceECCC---------EEEEECCCCcEEEEECCCCcc
Confidence            3789999999999999887 33 3344334555555         899999999999999999863

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.61  E-value=3.9e-13  Score=122.24  Aligned_cols=267  Identities=11%  Similarity=0.130  Sum_probs=180.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCC-----------CeEEEEecCceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLS-----------PITTVAVSGTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~l~s~~~dg~i~iwd~~   70 (343)
                      .|++++.++.|+.+|..+       ++.     +.++.....           .-..+++.+..++.++.|+.|..+|..
T Consensus        79 ~vyv~~~~~~v~AlD~~t-------G~~-----~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~  146 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRT-------GNR-----IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAA  146 (677)
T ss_dssp             EEEEECGGGCEEEEETTT-------TEE-----EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCeEEEEECCC-------CcE-----EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECC
Confidence            466777888999999876       322     222221110           112344567889999999999999999


Q ss_pred             CCeeeeEeccC-CC---CCeEEEEEeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeecccc--------
Q 019326           71 TSSSLGAIHHH-ES---SSVTSLAFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVHKKG--------  132 (343)
Q Consensus        71 ~~~~~~~~~~~-~~---~~v~~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------  132 (343)
                      +|+.+..+... ..   ..+.+--...++      .++.++.      ++.|+.+|..+++.+..+......        
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~~------~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~  220 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITGAPRVFKG------KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDE  220 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             CCCEEeeecCCcCcCcCcccccCcEEECC------EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccc
Confidence            99999888643 10   112111111133      5555553      799999999999998877642211        


Q ss_pred             ------------------------EEEEEEecCCCEEEEEeCCC-------------------eEEEEEccCCceeEEEE
Q 019326          133 ------------------------VNDLAVHHSGKLALTVGRDD-------------------CLAMVNLVRGRRSFYHK  169 (343)
Q Consensus       133 ------------------------v~~i~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~  169 (343)
                                              ...++++|++..++.+..++                   .|..+|.++++......
T Consensus       221 ~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~  300 (677)
T 1kb0_A          221 SMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ  300 (677)
T ss_dssp             HHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             ccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence                                    13578889888888887664                   59999999999887766


Q ss_pred             cCC----------cceEEEEeCCC---CEEEEE-eCCcEEEEEcccceeEEEecCC--c----------ce---------
Q 019326          170 IGK----------EASLIKFDGSG---EKFFMV-TEEKVGIHQAEDAKLLCELDGK--K----------RI---------  214 (343)
Q Consensus       170 ~~~----------~~~~~~~~~~~---~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--~----------~i---------  214 (343)
                      ...          .+..+....+|   ..++.+ .++.+.++|..+++.+..+...  .          ++         
T Consensus       301 ~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~  380 (677)
T 1kb0_A          301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS  380 (677)
T ss_dssp             SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred             cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence            431          23334444466   556666 8999999999999988766521  0          01         


Q ss_pred             ---------------EEeeecC-CCeEEEEeC-------------------------------------------CCcEE
Q 019326          215 ---------------LCAAPGE-NGVLFTGGE-------------------------------------------DRSIT  235 (343)
Q Consensus       215 ---------------~~~~~~~-~~~l~~~~~-------------------------------------------dg~i~  235 (343)
                                     ..+++++ .+++++...                                           .|.|.
T Consensus       381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~  460 (677)
T 1kb0_A          381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL  460 (677)
T ss_dssp             SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred             CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence                           0345553 456665432                                           27899


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                      .||+.+++.+.++.  +..++.+..+...+.         +++.++.||.+++||.++++..
T Consensus       461 A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~---------~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          461 AWDPVAQKAAWSVE--HVSPWNGGTLTTAGN---------VVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEETTTTEEEEEEE--ESSSCCCCEEEETTT---------EEEEECTTSEEEEEETTTCCEE
T ss_pred             EEeCCCCcEEeecC--CCCCCcCcceEeCCC---------EEEEECCCCcEEEEECCCCcee
Confidence            99999999998887  445555555666665         8888999999999999998643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.60  E-value=9.9e-13  Score=119.57  Aligned_cols=248  Identities=11%  Similarity=0.113  Sum_probs=171.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCC-C----CCeEE-EEecCceEEEeeC------CCeEEEEEc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAH-L----SPITT-VAVSGTAAASGGT------DDTIHLYDL   69 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~-l~~~~~~l~s~~~------dg~i~iwd~   69 (343)
                      +|++++.|+.|..+|..+       ++..     ..+..+ .    ..+.+ ....+..++.++.      +|.|+.+|.
T Consensus       130 ~v~v~~~dg~l~alD~~t-------G~~~-----W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~  197 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAAT-------GKEV-----WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDA  197 (677)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEE-----EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCC-------CCEE-----eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEEC
Confidence            578888999999999987       3322     222222 1    11211 1223566666654      799999999


Q ss_pred             CCCeeeeEeccCCCC-------------------------------CeEEEEEeCCCCCCCCceEEEeeCCC--------
Q 019326           70 STSSSLGAIHHHESS-------------------------------SVTSLAFYTPQNLSVPRNLFSTSADG--------  110 (343)
Q Consensus        70 ~~~~~~~~~~~~~~~-------------------------------~v~~l~~~~~~~~~~~~~l~s~~~dg--------  110 (343)
                      .+|+.+..+......                               ....+++.+++     ..++.+..++        
T Consensus       198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-----~~vy~~~~~~~~w~~~~~  272 (677)
T 1kb0_A          198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-----NTMYVGTGNGSPWSHKVR  272 (677)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-----TEEEEECCCEESSCHHHH
T ss_pred             CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-----CEEEEECCCCccccCCCC
Confidence            999999887643111                               11356788877     6777777664        


Q ss_pred             -----------eEEEEECCCcceeeeeeecc---------ccEEEEEEecCC---CEEEEEeCCCeEEEEEccCCceeEE
Q 019326          111 -----------FVSIFDADPFVLLTSVKVHK---------KGVNDLAVHHSG---KLALTVGRDDCLAMVNLVRGRRSFY  167 (343)
Q Consensus       111 -----------~i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~  167 (343)
                                 .|..+|.++++.+..++...         .....+....+|   ..++.++.+|.++++|.++++.+..
T Consensus       273 ~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          273 SPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence                       59999999999988876421         122223444467   6899999999999999999998766


Q ss_pred             EEcCCc------------c------------------------eEEEEeCCCCEEEEE-eC-------------------
Q 019326          168 HKIGKE------------A------------------------SLIKFDGSGEKFFMV-TE-------------------  191 (343)
Q Consensus       168 ~~~~~~------------~------------------------~~~~~~~~~~~~~~~-~~-------------------  191 (343)
                      ......            +                        ..++++|+...+++. .+                   
T Consensus       353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~  432 (677)
T 1kb0_A          353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG  432 (677)
T ss_dssp             EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred             ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccc
Confidence            553210            0                        146889988888775 31                   


Q ss_pred             ------------------------CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          192 ------------------------EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       192 ------------------------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                                              +.|..||+.+++.+.++.+..++....+. .+++++.++.||.+++||.++++.+.
T Consensus       433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence                                    67999999999999988865554443333 67788889999999999999999999


Q ss_pred             EecccccccEEEEEEEecCC
Q 019326          247 CIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ++..++...-.-+.+..++.
T Consensus       513 ~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          513 EAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEECSSCCCSCCEEEEETTE
T ss_pred             eeeCCCCcccCCEEEEeCCE
Confidence            98844433334455556554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=3.2e-11  Score=101.78  Aligned_cols=253  Identities=12%  Similarity=0.029  Sum_probs=168.0

Q ss_pred             eEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeeeeEe
Q 019326           11 FIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus        11 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|.+||..+            .+.+..++.-..+  .++++  +++++++.          .++.|.+||..+.+.+..+
T Consensus        48 ~v~v~D~~t------------~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i  113 (373)
T 2mad_H           48 QQWVLDAGS------------GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI  113 (373)
T ss_pred             EEEEEECCC------------CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEE
Confidence            788999876            2233444433344  78888  78888875          3678999999998887766


Q ss_pred             ccC-C-----CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeee-eeeccccEEEEEEecCC-CEEEEE
Q 019326           79 HHH-E-----SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTS-VKVHKKGVNDLAVHHSG-KLALTV  148 (343)
Q Consensus        79 ~~~-~-----~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~  148 (343)
                      ... .     ......+.|+|++     ++|+++..  ++.|.++| .+++.+.. +... .   ++.+.|++ +.+++.
T Consensus       114 ~~~~~~~~~~g~~p~~~~~spDG-----~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~  183 (373)
T 2mad_H          114 ELPDAPRFDVGPYSWMNANTPNN-----ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLL  183 (373)
T ss_pred             ECCCccccccCCCccceEECCCC-----CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEE
Confidence            431 0     1234589999999     78887764  57899999 99988877 5432 2   24455554 566777


Q ss_pred             eCCCeEEEEEccCCceeEEEE-----cC-Ccc-eEEEEeCCCCEEEE-EeCCcEEEEEcccce--eEEEecC--------
Q 019326          149 GRDDCLAMVNLVRGRRSFYHK-----IG-KEA-SLIKFDGSGEKFFM-VTEEKVGIHQAEDAK--LLCELDG--------  210 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~-----~~-~~~-~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~--~~~~~~~--------  210 (343)
                      +.||.+.++|. +++......     .. .++ ....+.+++..++. ...+.+.+.|+....  ....+..        
T Consensus       184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            78999999999 777653322     11 111 22345565554444 477889999986542  2232221        


Q ss_pred             ---CcceEEeeec-CCCeEEEEeC----------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          211 ---KKRILCAAPG-ENGVLFTGGE----------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       211 ---~~~i~~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                         +.....+.++ +++.+++...          ++.|.++|..+++.+.++.  -.....+++|+++++.        +
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~--~g~~p~~i~~s~Dg~~--------~  332 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGP--------D  332 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE--CCCCcCeEEECCCCCe--------E
Confidence               1223335566 4455555432          3579999999999999987  3446889999988751        4


Q ss_pred             EEEEc-CCCcEEEEeccCccccC
Q 019326          277 VASAS-SDGVICVWDVRMAIKEK  298 (343)
Q Consensus       277 l~s~~-~dg~i~vwd~~~~~~~~  298 (343)
                      ++++. .++.|.++|+.+.+...
T Consensus       333 l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          333 LYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EEEEcCCCCeEEEEECCCCCEEe
Confidence            66666 58999999999876443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=2.4e-13  Score=125.64  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=156.1

Q ss_pred             CCCCeEEEEec--CceEEEeeCC-----CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---
Q 019326           41 HLSPITTVAVS--GTAAASGGTD-----DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---  110 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---  110 (343)
                      |...+..++|+  |++|+.+..+     ..|++||+.+++.+.... + ...+..++|+|+ .     .|+.++.++   
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~-~~~~~~~~wspD-~-----~l~~~~~~~~~~  232 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K-WVKFSGLAWLGN-D-----ALLYSRFAEPKE  232 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E-EEESCCCEESTT-S-----EEEEEECCCC--
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-C-CceeccEEEECC-C-----EEEEEEecCccc
Confidence            44468889998  7888776543     469999999998765422 2 222457899998 4     555555544   


Q ss_pred             -----------eEEEEECCCcce--eeeeee--ccccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCC--c-eeEE
Q 019326          111 -----------FVSIFDADPFVL--LTSVKV--HKKGVNDLAVHHSGKLALTVGRDD-----CLAMVNLVRG--R-RSFY  167 (343)
Q Consensus       111 -----------~i~iwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~wd~~~~--~-~~~~  167 (343)
                                 .|++|++.+++.  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  + ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                       389999977652  222222  233588999999999888877544     8999999877  4 3333


Q ss_pred             EEcCCcceEEEEeCCCCEEEEE-e----CCcEEEEEcccc--eeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          168 HKIGKEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDA--KLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~--~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      .......... ++|++..++.. .    +..|.+||+.++  .....+. +...+..+.+.++.++++...|+..+||.+
T Consensus       313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEE
T ss_pred             cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEE
Confidence            2222333333 45888888777 3    345999998874  3333334 334466777776678888888988777755


Q ss_pred             C-CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE---cCCCcEEEEeccCcc
Q 019326          240 N-SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA---SSDGVICVWDVRMAI  295 (343)
Q Consensus       240 ~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~  295 (343)
                      . +++....+...+...+..+.+++++..        ++++.   ...++|++||+.++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~--------l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRH--------AYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSC--------EEEEEEETTEEEEEEEEETTTTE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCE--------EEEEEcCCCCCCEEEEEECCCCc
Confidence            4 466666666234677888888887651        33332   345789999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.60  E-value=1.7e-12  Score=118.27  Aligned_cols=253  Identities=11%  Similarity=0.090  Sum_probs=167.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEee------CCCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGG------TDDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~------~dg~i~iwd~~~~~~   74 (343)
                      +|++++.|+.|..+|..+       ++..-......-......+.+ -...+..++.+.      .+|.|+.||..+|+.
T Consensus       123 ~v~v~~~dg~l~AlDa~T-------G~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          123 KVYVGVLDGRLEAIDAKT-------GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             EEEEEccCCEEEEEECCC-------CCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            478888999999999987       333221111000000011111 112245555554      378999999999999


Q ss_pred             eeEeccCC-C-----------------------------CCeEEEEEeCCCCCCCCceEEEeeCCCe-------------
Q 019326           75 LGAIHHHE-S-----------------------------SSVTSLAFYTPQNLSVPRNLFSTSADGF-------------  111 (343)
Q Consensus        75 ~~~~~~~~-~-----------------------------~~v~~l~~~~~~~~~~~~~l~s~~~dg~-------------  111 (343)
                      +..+.... .                             ..-..+++.|..     .+++.+..++.             
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-----~~vy~~~~~g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-----NLLYIGVGNGSLWDPKWRSQAKGD  270 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-----TEEEEECCCEESSCHHHHHTTCSC
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-----CEEEEeCCCCCccccCCCCCCCCC
Confidence            88875310 0                             011257788877     68888887764             


Q ss_pred             ------EEEEECCCcceeeeeee--cc-------ccEEEEEEecCCC---EEEEEeCCCeEEEEEccCCceeEEEEcCCc
Q 019326          112 ------VSIFDADPFVLLTSVKV--HK-------KGVNDLAVHHSGK---LALTVGRDDCLAMVNLVRGRRSFYHKIGKE  173 (343)
Q Consensus       112 ------i~iwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  173 (343)
                            |..+|.++++.+..++.  |.       .++.......+|+   .++.++.+|.++++|.++++.+........
T Consensus       271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~  350 (689)
T 1yiq_A          271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ  350 (689)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence                  99999999999988864  21       1222223333554   788999999999999999998754332210


Q ss_pred             ----------------------------------------ceEEEEeCCCCEEEEE-e----------------------
Q 019326          174 ----------------------------------------ASLIKFDGSGEKFFMV-T----------------------  190 (343)
Q Consensus       174 ----------------------------------------~~~~~~~~~~~~~~~~-~----------------------  190 (343)
                                                              -..++++|+...+++. .                      
T Consensus       351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  430 (689)
T 1yiq_A          351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY  430 (689)
T ss_dssp             SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred             ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence                                                    1126888888877765 2                      


Q ss_pred             -----------------------CCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          191 -----------------------EEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       191 -----------------------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                                             ++.+..||+.+++.+.++++..+.....+. .+++++.|+.||.++.||.++|+.+.
T Consensus       431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence                                   267999999999999988855544332333 67899999999999999999999999


Q ss_pred             EecccccccEEEEEEEecCC
Q 019326          247 CIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ++..++...-.-+.+..++.
T Consensus       511 ~~~~~~~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          511 EQPAASGVMAAPVTYSVDGE  530 (689)
T ss_dssp             EEECSSCCCSCCEEEEETTE
T ss_pred             eeeCCCCcccCceEEEECCE
Confidence            98844333334466666664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=2.4e-11  Score=99.51  Aligned_cols=215  Identities=9%  Similarity=0.036  Sum_probs=146.7

Q ss_pred             CCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           41 HLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        41 h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      +..-..+..|+   +.++++...++.|..||..+++. ..+. . ...+.++++++++     + |+.+. ++.|.+||.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~-~~~~~~i~~~~dG-----~-l~v~~-~~~l~~~d~   80 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-M-DAPVSSVALRQSG-----G-YVATI-GTKFCALNW   80 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-C-SSCEEEEEEBTTS-----S-EEEEE-TTEEEEEET
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-C-CCceEEEEECCCC-----C-EEEEE-CCeEEEEEC
Confidence            34455677887   45677777789999999987765 3333 3 4679999999998     5 44444 568999999


Q ss_pred             CCcceeeeeee----ccccEEEEEEecCCCEEEEEeCC---------CeEEEEEccC-CceeEEEEcCCcceEEEEeCCC
Q 019326          118 DPFVLLTSVKV----HKKGVNDLAVHHSGKLALTVGRD---------DCLAMVNLVR-GRRSFYHKIGKEASLIKFDGSG  183 (343)
Q Consensus       118 ~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d---------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~  183 (343)
                      ++++.......    ....+..++++|+|+++++....         ..-.+|.+.. ++.............++|+|++
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence            87664332221    12358899999999876654321         2234554443 3333333334567889999999


Q ss_pred             CEEEEE--eCCcEEEEEc--cccee-----EEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccc
Q 019326          184 EKFFMV--TEEKVGIHQA--EDAKL-----LCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAH  252 (343)
Q Consensus       184 ~~~~~~--~~~~i~~~d~--~~~~~-----~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h  252 (343)
                      +.++.+  ..+.|.+|++  .++..     ...+. .......+++++ +++.++....+.|..||..+++.+..+. .+
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p  239 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LP  239 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CC
Confidence            988766  5788999987  44443     22222 234577888874 5555555667889999999999998888 66


Q ss_pred             cccEEEEEEE-ecCC
Q 019326          253 SARVKGIVVL-TKND  266 (343)
Q Consensus       253 ~~~v~~~~~~-~~~~  266 (343)
                      ...+++++|. ++..
T Consensus       240 ~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYS  254 (297)
T ss_dssp             SSBEEEEEEESGGGC
T ss_pred             CCCceEEEEeCCCCC
Confidence            6789999998 6654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.58  E-value=4.8e-11  Score=97.62  Aligned_cols=249  Identities=12%  Similarity=0.089  Sum_probs=163.1

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE-eccCCCC
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA-IHHHESS   84 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~   84 (343)
                      .++.|.+|+...           +... ..+..+...+.+++++  +++.++...++.|..||.. ++.... +... ..
T Consensus        39 ~~~~v~~~~~~~-----------~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~-~~  104 (300)
T 2qc5_A           39 KANKISSLDQSG-----------RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQP-DS  104 (300)
T ss_dssp             TTTEEEEECTTS-----------CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST-TC
T ss_pred             CCCeEEEECCCC-----------ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCC-CC
Confidence            456777776541           1111 2233445678899998  5555555557889999988 554322 2223 46


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeee-eeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCc
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTS-VKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR  163 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~  163 (343)
                      .+.++++.+++     +++++...++.|..+|.. ++.... +......+..+++.++++..++...++.|..+|. +++
T Consensus       105 ~~~~i~~~~~g-----~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~  177 (300)
T 2qc5_A          105 GPYGITEGLNG-----DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK  177 (300)
T ss_dssp             CEEEEEECSTT-----CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCccceECCCC-----CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc
Confidence            78999999888     566666668899999987 444322 2223457899999999997777666889999998 555


Q ss_pred             eeEEEEc---CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE-ec-CCcceEEeeecCC-CeEEEEeCCCcEEE
Q 019326          164 RSFYHKI---GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE-LD-GKKRILCAAPGEN-GVLFTGGEDRSITA  236 (343)
Q Consensus       164 ~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-~~-~~~~i~~~~~~~~-~~l~~~~~dg~i~i  236 (343)
                      ... ...   ...+..++++++++.+++. ..+.|.+|+. +++.... +. ....+.+++++++ ++.++...++.|..
T Consensus       178 ~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  255 (300)
T 2qc5_A          178 LEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR  255 (300)
T ss_dssp             EEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             EEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence            433 222   2457789999999877776 5678999998 4443332 22 3456788888754 44444445689999


Q ss_pred             EECCCCceeE-EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          237 WDTNSGKVAY-CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       237 ~d~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      ||. +++... .+. .....+.++++.+++.         ++++.. . .|..+|.+
T Consensus       256 ~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g~---------l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          256 ITN-DNTIQEYQLQ-TENAEPHGITFGKDGS---------VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             ECT-TSCEEEEECC-STTCCCCCEEECTTSC---------EEEECS-S-EEEEEEEC
T ss_pred             ECC-CCcEEEEECC-ccCCccceeEeCCCCC---------EEEEcc-C-ceEEeCCC
Confidence            998 454332 222 3445678888887765         555544 4 67666653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=8.8e-12  Score=106.63  Aligned_cols=230  Identities=10%  Similarity=0.053  Sum_probs=157.1

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECC
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDAD  118 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~  118 (343)
                      .....|+|+  ++++++...++.|++||.+++.........  .... ++|++++     +.|+++..++  .|.+++..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g-----~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDK-----QRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--CBCB-CEECTTS-----SEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--CCCc-eeEecCC-----CcEEEEecCCCceEEEEEcC
Confidence            467889998  666666666789999999987766555443  3334 9999998     6888888766  79999887


Q ss_pred             Ccceeeee----eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE----cCC-c-ce-EEEEeCCCCEEE
Q 019326          119 PFVLLTSV----KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK----IGK-E-AS-LIKFDGSGEKFF  187 (343)
Q Consensus       119 ~~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~----~~~-~-~~-~~~~~~~~~~~~  187 (343)
                      .+.....+    ......+.+++++|++..|+.+..++.|+.||..++.......    ... . +. .++++|++..++
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            65443333    1134567889999955556667778999999998776433311    111 1 23 899999655555


Q ss_pred             EE--eCCcEEEEEcccceeEEEecC---------------CcceEEeeecC-CCeEEEEe-CCCcEEEEECCCCceeEEe
Q 019326          188 MV--TEEKVGIHQAEDAKLLCELDG---------------KKRILCAAPGE-NGVLFTGG-EDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       188 ~~--~~~~i~~~d~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~  248 (343)
                      ++  ..+.|+.|+.... .......               -.....+++++ ++++++-. .++.|+.|++.+++. ..+
T Consensus       283 v~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~  360 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV  360 (409)
T ss_dssp             EEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred             EEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence            55  6788999987643 2222111               13467888884 45666666 788999999877764 333


Q ss_pred             cccc---------------cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          249 EDAH---------------SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       249 ~~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      . ++               -....++++.+++.         ++++-..+++|+.++++
T Consensus       361 ~-g~~~~~g~~~g~~~~~~~~~P~giavd~~g~---------lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          361 A-GQVDVASQIDGTPLEATFNYPYDICYDGEGG---------YWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             E-ECTTCBSCCCBSTTTCCBSSEEEEEECSSSE---------EEEEESTTCEEEEEEEC
T ss_pred             e-CCCCCCCcCCCChhceEeCCceEEEEcCCCC---------EEEEECCCCeEEEEEeC
Confidence            3 33               24578999988765         77787888888887753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.55  E-value=1.6e-12  Score=108.48  Aligned_cols=257  Identities=12%  Similarity=0.078  Sum_probs=165.0

Q ss_pred             CceEEEeeC-----CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----------CCCeEEEEE
Q 019326           52 GTAAASGGT-----DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----------ADGFVSIFD  116 (343)
Q Consensus        52 ~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd  116 (343)
                      ++.+++...     ++.|.+.|..+++.+..+... ..+ . ++++|++     ++++++.          .++.|.+||
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P-~-va~spDG-----~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-N-PVVADDG-----SFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-E-EEECTTS-----SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCC-c-EEECCCC-----CEEEEEcccccccccCCCCCEEEEEE
Confidence            556666554     679999999999999999866 455 4 9999999     6676665          367899999


Q ss_pred             CCCcceeeeeeecc-------ccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          117 ADPFVLLTSVKVHK-------KGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       117 ~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      ..+.+.+.++....       .....++|+|+|++++++..  ++.|.++|+.+++.+.....+..  ...+....+.++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF  193 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence            99999888886432       23556899999999988864  68999999999998887766542  122222333333


Q ss_pred             EE-eCCcEEEEEccc-ceeEEEec-----CCcceE-Eeeec-CCCeEEEEeCCCcEEEEECCCCc--eeEEec-------
Q 019326          188 MV-TEEKVGIHQAED-AKLLCELD-----GKKRIL-CAAPG-ENGVLFTGGEDRSITAWDTNSGK--VAYCIE-------  249 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~-~~~~~~~~-----~~~~i~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-------  249 (343)
                      +. .||.+.+.++.+ ++......     ...++. ...|. .++.++..+.+|.|++.|..+..  .+..+.       
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER  273 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccc
Confidence            33 677777777765 44322111     111221 12342 33334345568999999997654  222221       


Q ss_pred             --ccccccEEEEEEEecCCCCCCCCCCeEEEEEcC----------CCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          250 --DAHSARVKGIVVLTKNDGGSTAENPYLVASASS----------DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       250 --~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                        .-.......+++++++.         .++....          .+.|.+.|+.+.+..     ..+..+.++..++++
T Consensus       274 ~~g~~p~g~q~~a~~~~~~---------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-----~~i~vg~~~~~lavs  339 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALD---------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMGHEIDSINVS  339 (386)
T ss_dssp             HTTEEECSSSCEEEETTTT---------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEEEECEEEEC
T ss_pred             cccccCCCcceeeECCCCC---------eEEEEeccccccccCCCCCEEEEEECCCCeEE-----EEEECCCCcceEEEC
Confidence              00122333466677665         5555432          257899999987533     344445578899999


Q ss_pred             CCCc-eecc-ccCCCCC
Q 019326          318 STKS-FKRP-QIGDSAP  332 (343)
Q Consensus       318 ~~~~-~~~~-~~~~~~~  332 (343)
                      +|++ +++. ...++.+
T Consensus       340 ~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          340 QDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             SSSSCEEEEEETTTTEE
T ss_pred             CCCCeEEEEEcCCCCeE
Confidence            9986 4444 3434433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.55  E-value=1.8e-13  Score=113.95  Aligned_cols=283  Identities=13%  Similarity=0.108  Sum_probs=182.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .|.+|+.++.|..|| ..       ++     ....+..+...+.++... ...++.++.+  |..+|. +++.+..+..
T Consensus        32 ~l~v~t~~~~l~~~d-~~-------g~-----~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~   95 (330)
T 3hxj_A           32 TIYLGSSNKNLYAIN-TD-------GS-----VKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT   95 (330)
T ss_dssp             CEECSSTTTTTEEEC-TT-------SC-----EEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred             eEEEEcCCCEEEEEC-CC-------Cc-----EEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC
Confidence            366778888899998 55       22     122222334455677776 6667777665  888886 6666655544


Q ss_pred             CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 019326           81 HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV  160 (343)
Q Consensus        81 ~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~  160 (343)
                      . ........+. ++      .++.++.++.|..+|.. ++.......+...+.++...+++. ++.++.++.|..+|..
T Consensus        96 ~-~~~~~~~~~~-~~------~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A           96 K-KAIVSDFTIF-ED------ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             ------CCEEEE-TT------EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred             C-CCcccCceEE-CC------EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence            3 3333333343 43      78888889999999998 777776665555666677777765 6667788999999998


Q ss_pred             CCceeEEEEcC-CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          161 RGRRSFYHKIG-KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                       ++........ ..+..+...+++..++..  +.+..+| .+++...... ....+.++...+++.++.++.++.|..+|
T Consensus       166 -g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          166 -GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN  241 (330)
T ss_dssp             -SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC
T ss_pred             -CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC
Confidence             7766555544 345567777777765554  8999999 7777766665 33556677776666888888888999998


Q ss_pred             CCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccc-cccceeEEEcC
Q 019326          239 TNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAK-TNSRLTCLAGS  317 (343)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~i~~~~~s  317 (343)
                      . +++.+..+. .....+..+.+.+++          .|..++.+|.|..+|. ++...     .... ....+.++...
T Consensus       242 ~-~g~~~~~~~-~~~~~~~~~~~~~~g----------~l~v~t~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~d  303 (330)
T 3hxj_A          242 P-DGTEKWRFK-TGKRIESSPVIGNTD----------TIYFGSYDGHLYAINP-DGTEK-----WNFETGSWIIATPVID  303 (330)
T ss_dssp             T-TSCEEEEEE-CSSCCCSCCEECTTS----------CEEEECTTCEEEEECT-TSCEE-----EEEECSSCCCSCCEEC
T ss_pred             C-CCCEeEEee-CCCCccccceEcCCC----------eEEEecCCCCEEEECC-CCcEE-----EEEEcCCccccceEEc
Confidence            4 567776666 333334445554344          5788888989999985 43211     1111 12346667776


Q ss_pred             CCCceeccccCCCCCC
Q 019326          318 STKSFKRPQIGDSAPK  333 (343)
Q Consensus       318 ~~~~~~~~~~~~~~~~  333 (343)
                      +++.+.+ +..++...
T Consensus       304 ~~g~l~~-gt~~G~~~  318 (330)
T 3hxj_A          304 ENGTIYF-GTRNGKFY  318 (330)
T ss_dssp             TTCCEEE-ECTTSCEE
T ss_pred             CCCEEEE-EcCCCeEE
Confidence            6766544 55555433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=9.1e-13  Score=110.41  Aligned_cols=167  Identities=9%  Similarity=0.068  Sum_probs=127.8

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCe---------eee-EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSS---------SLG-AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---------~~~-~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      +++.|+++  ..++++|+.++ +++|+++..+         ... ....+ .. |+.|+|  ++     ++|+++ .++.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~l-p~-V~~l~f--d~-----~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PD-VIFVCF--HG-----DQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TT-EEEEEE--ET-----TEEEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeC-CC-eeEEEE--CC-----CEEEEE-cCCc
Confidence            68888988  77888888875 6679876543         111 12234 45 999999  66     688888 8899


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeC
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTE  191 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (343)
                      |++||+.+.........|...+.++.+.+.  .++++..||.|.+||+.++....   ....+.+++|+|+| ..+...+
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~d  181 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKD  181 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETT
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcC
Confidence            999999887766677778888988887765  38889999999999999877543   45689999999999 4444499


Q ss_pred             CcEEEEEccccee--EEEe------c----CCcceEEeeecCCC-eEEE
Q 019326          192 EKVGIHQAEDAKL--LCEL------D----GKKRILCAAPGENG-VLFT  227 (343)
Q Consensus       192 ~~i~~~d~~~~~~--~~~~------~----~~~~i~~~~~~~~~-~l~~  227 (343)
                      +.+++|+......  ...+      .    +...|.++.|..+. ++++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999999888775  5556      2    56789999998554 4443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=7.9e-12  Score=115.50  Aligned_cols=221  Identities=13%  Similarity=0.036  Sum_probs=143.4

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCe-----
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC-----  153 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-----  153 (343)
                      ..+..++|+|++     ++|+.+..+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.     
T Consensus       163 ~~~~~~~~SPDG-----~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          163 TALDAWAASDDG-----RLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             EEEEEEEECTTS-----SEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             EEEEeEEECCCC-----CEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence            368899999999     677766543     3699999999887543 212223357899999 98888887654     


Q ss_pred             ---------EEEEEccCCce--eEEEEcC---CcceEEEEeCCCCEEEEE-eCC-----cEEEEEcccc--eeEEEe-cC
Q 019326          154 ---------LAMVNLVRGRR--SFYHKIG---KEASLIKFDGSGEKFFMV-TEE-----KVGIHQAEDA--KLLCEL-DG  210 (343)
Q Consensus       154 ---------i~~wd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-----~i~~~d~~~~--~~~~~~-~~  210 (343)
                               |++|++.++..  .......   ..+..+.|+|+|++++.. .++     .+.+||+.++  +....+ .+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                     89999987762  2222222   236789999999988877 443     7999999876  413333 33


Q ss_pred             CcceEEeeecCCCeEEEEeC----CCcEEEEECCCC-ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc
Q 019326          211 KKRILCAAPGENGVLFTGGE----DRSITAWDTNSG-KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       211 ~~~i~~~~~~~~~~l~~~~~----dg~i~i~d~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                      ........+.+++.|+..+.    ++.|.+||+.++ .....+...+...+..+.+. .+.         ++++...|+.
T Consensus       316 ~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~---------lv~~~~~dg~  385 (741)
T 1yr2_A          316 LKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR---------LFASYIHDAK  385 (741)
T ss_dssp             SSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE---------EEEEEEETTE
T ss_pred             CCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE---------EEEEEEECCE
Confidence            33344433446666666554    355999999875 23344432555567777776 333         7888899998


Q ss_pred             EEEEeccC-ccccCCCcccccccccceeEEEcCCCCceec
Q 019326          286 ICVWDVRM-AIKEKPLPLAEAKTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       286 i~vwd~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~  324 (343)
                      .+||.++. +.....  + .......+..+++++++..++
T Consensus       386 ~~l~~~~~~g~~~~~--l-~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGA--V-SLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             EEEEEEETTSCEEEE--C-BCSSSCEEEEEECCBTCSCEE
T ss_pred             EEEEEEeCCCCceee--c-cCCCCeEEEEeecCCCCCEEE
Confidence            88886652 221111  1 122234577888888776444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.53  E-value=1.5e-10  Score=96.05  Aligned_cols=209  Identities=14%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             CeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           44 PITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        44 ~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ...+.+|+   +..+++...++.|..||..+++.. .+. . ...+.++++.+++     ++++ ++.+ .|.+||..++
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~-~~~v~~i~~~~dg-----~l~v-~~~~-gl~~~d~~~g  119 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-L-PFMGSALAKISDS-----KQLI-ASDD-GLFLRDTATG  119 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-C-SSCEEEEEEEETT-----EEEE-EETT-EEEEEETTTC
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-C-CCcceEEEEeCCC-----eEEE-EECC-CEEEEECCCC
Confidence            34677887   456667777899999999877543 333 2 3679999999998     5555 4444 5999999877


Q ss_pred             ceeeeeee----ccccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-
Q 019326          121 VLLTSVKV----HKKGVNDLAVHHSGKLALTVGR------DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       121 ~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      +.......    ....+.+++++|+|+++++...      .+.|..++  +++.............++|+|+++.++.+ 
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~  197 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD  197 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence            64332221    1236889999999987665542      24566666  45433332333456789999999987666 


Q ss_pred             -eCCcEEEEEcc--cc-e-----eEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEE
Q 019326          190 -TEEKVGIHQAE--DA-K-----LLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       190 -~~~~i~~~d~~--~~-~-----~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                       .++.|.+|+..  ++ .     ....+. .......++++. +++.++...++.|.+||. +++.+..+. .+...+++
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~  275 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTC  275 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEE
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEE
Confidence             46789999985  55 3     222222 234567788874 444444445688999998 577777777 66667999


Q ss_pred             EEEE-ecCC
Q 019326          259 IVVL-TKND  266 (343)
Q Consensus       259 ~~~~-~~~~  266 (343)
                      ++|. +++.
T Consensus       276 ~af~g~d~~  284 (326)
T 2ghs_A          276 PAFIGPDAS  284 (326)
T ss_dssp             EEEESTTSC
T ss_pred             EEEecCCCC
Confidence            9998 5554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.7e-11  Score=101.20  Aligned_cols=223  Identities=10%  Similarity=-0.011  Sum_probs=146.8

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEE-------eeCCCeEEEEECCCcceeeeeee-----ccccEEEEEEecC-CCEEEEEe
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFS-------TSADGFVSIFDADPFVLLTSVKV-----HKKGVNDLAVHHS-GKLALTVG  149 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~~-~~~l~~~~  149 (343)
                      -....+++|.+++     .++++       +..++.|.+||..+++... +..     +...+.+++++++ ++++++ +
T Consensus        17 ~~~~~~~~~~~~g-----~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~   89 (314)
T 1pjx_A           17 IPGAEGPVFDKNG-----DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVA-D   89 (314)
T ss_dssp             CTTCEEEEECTTS-----CEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEE-E
T ss_pred             CCCccCceECCCC-----CEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEE-E
Confidence            3567899999887     56666       5778999999987766532 322     4467899999999 654544 4


Q ss_pred             CCCeEEEEEccCCceeEE-EEc-----CCcceEEEEeCCCCEEEEE-eC---------------CcEEEEEcccceeEEE
Q 019326          150 RDDCLAMVNLVRGRRSFY-HKI-----GKEASLIKFDGSGEKFFMV-TE---------------EKVGIHQAEDAKLLCE  207 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~-~~---------------~~i~~~d~~~~~~~~~  207 (343)
                      ..+.|..||.. ++.... ...     ...+..++++++++.+++. .+               +.+..++.. ++....
T Consensus        90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence            45579999988 664332 211     1347789999999888777 43               467777765 544433


Q ss_pred             ecCCcceEEeeec----CCC-eEEEE-eCCCcEEEEECC-CCc-----eeEEeccccc-ccEEEEEEEecCCCCCCCCCC
Q 019326          208 LDGKKRILCAAPG----ENG-VLFTG-GEDRSITAWDTN-SGK-----VAYCIEDAHS-ARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       208 ~~~~~~i~~~~~~----~~~-~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~  274 (343)
                      ..+......++++    +++ .++.+ ..++.|.+||.. +++     ....+. .+. ..+..+++.+++.        
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~--------  238 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNN--------  238 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCC--------
T ss_pred             ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCC--------
Confidence            3333445677776    543 55444 567899999986 443     222333 333 5678899988776        


Q ss_pred             eEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCcee-ccccC
Q 019326          275 YLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK-RPQIG  328 (343)
Q Consensus       275 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~-~~~~~  328 (343)
                       ++++...++.|.+||.+++.....   ... ....+.++++++++..+ +....
T Consensus       239 -l~v~~~~~~~i~~~d~~~g~~~~~---~~~-~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          239 -LLVANWGSSHIEVFGPDGGQPKMR---IRC-PFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             -EEEEEETTTEEEEECTTCBSCSEE---EEC-SSSCEEEEEECTTSSEEEEEETT
T ss_pred             -EEEEEcCCCEEEEEcCCCCcEeEE---EeC-CCCCceeEEECCCCCEEEEEeCC
Confidence             777777789999999885532111   111 12568899999999844 44333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.53  E-value=1.1e-12  Score=109.06  Aligned_cols=218  Identities=10%  Similarity=0.075  Sum_probs=157.7

Q ss_pred             cCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           51 SGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        51 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      .+..++.++.++.|..+|.. ++....+... ...+.++...+++      .++.++.++.|..+|.. ++....+....
T Consensus       106 ~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~~g------~l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          106 FEDILYVTSMDGHLYAINTD-GTEKWRFKTK-KAIYATPIVSEDG------TIYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             ETTEEEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTS------CEEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             ECCEEEEEecCCEEEEEcCC-CCEEEEEcCC-CceeeeeEEcCCC------EEEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            37778888889999999998 7777777655 5566777777666      57778888999999998 77777776656


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD  209 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  209 (343)
                      ..+.++...+++...+ ++  +.|..+| .+++........ ..+..+...+++...+...++.+..++. +++.+..+.
T Consensus       177 ~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~  251 (330)
T 3hxj_A          177 AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFK  251 (330)
T ss_dssp             CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEee
Confidence            6677777877776544 44  7899999 677766555443 4577788888887777667788888874 556655555


Q ss_pred             CCc-ceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          210 GKK-RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       210 ~~~-~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      ... .+..+....++.|+.++.+|.|..+|. +++.+..+. .....+.++...+++          .|..++.+|.+++
T Consensus       252 ~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g----------~l~~gt~~G~~~~  319 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENG----------TIYFGTRNGKFYA  319 (330)
T ss_dssp             CSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTC----------CEEEECTTSCEEE
T ss_pred             CCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCC----------EEEEEcCCCeEEE
Confidence            332 233445545678889999999999996 677777766 445556666665555          4778999999999


Q ss_pred             EeccCc
Q 019326          289 WDVRMA  294 (343)
Q Consensus       289 wd~~~~  294 (343)
                      ...+..
T Consensus       320 ~~~~~~  325 (330)
T 3hxj_A          320 LFNLEH  325 (330)
T ss_dssp             EEC---
T ss_pred             Eecccc
Confidence            887754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=3.4e-11  Score=99.01  Aligned_cols=223  Identities=11%  Similarity=0.008  Sum_probs=149.6

Q ss_pred             ecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           38 YPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      +..........+|+  ++ ++++...++.|..|+. +++ ...+..+ ...+..+++.+++     +++++...++.|.+
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~-~~~~~gl~~d~dG-----~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDA-TAFTNGNAVDAQQ-----RLVHCEHGRRAITR  111 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEES-CSCEEEEEECTTS-----CEEEEETTTTEEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCC-CCccceeeECCCC-----CEEEEECCCCEEEE
Confidence            33455667788887  55 6777778899999998 454 3445445 5778999999998     55555555688999


Q ss_pred             EECCCcceeeeeeec-----cccEEEEEEecCCCEEEE----EeC-------------CCeEEEEEccCCceeEEEEcCC
Q 019326          115 FDADPFVLLTSVKVH-----KKGVNDLAVHHSGKLALT----VGR-------------DDCLAMVNLVRGRRSFYHKIGK  172 (343)
Q Consensus       115 wd~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~~~~~~  172 (343)
                      |+.+ ++. ..+..+     ...+.+++++++|+++++    +..             .+.|..+|..+++..... ...
T Consensus       112 ~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~  188 (305)
T 3dr2_A          112 SDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD  188 (305)
T ss_dssp             ECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred             ECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence            9986 443 222211     124678999999998876    332             256888887667654433 335


Q ss_pred             cceEEEEeCCCCEEEEE-eC------CcEEEEEcccceeE--EEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCC
Q 019326          173 EASLIKFDGSGEKFFMV-TE------EKVGIHQAEDAKLL--CELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNS  241 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~-~~------~~i~~~d~~~~~~~--~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~  241 (343)
                      ....++|+|+++.++++ ..      +.|.+|++......  ..+.  .......++++....|++++.+| |.+|+. +
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~-~  266 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTG-VCVFDS-D  266 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSE-EEEECT-T
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCc-EEEECC-C
Confidence            56789999999988777 43      68999998765411  1111  22334456776554566666554 999998 4


Q ss_pred             CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCC
Q 019326          242 GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG  284 (343)
Q Consensus       242 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg  284 (343)
                      ++.+..+. .+. .+..++|.+++.         .|+.++.++
T Consensus       267 g~~~~~~~-~~~-~~~~~~f~~d~~---------~L~it~~~~  298 (305)
T 3dr2_A          267 GQLLGHIP-TPG-TASNCTFDQAQQ---------RLFITGGPC  298 (305)
T ss_dssp             SCEEEEEE-CSS-CCCEEEECTTSC---------EEEEEETTE
T ss_pred             CCEEEEEE-CCC-ceeEEEEeCCCC---------EEEEEcCCe
Confidence            77777776 333 588899986655         676666654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1e-12  Score=110.06  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=131.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-----------eeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR-----------RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      +++.+++++...++++|+.++ +.+|++...+           ......++. +..++|  ++..++++.++.|.+||++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence            688999999999999999874 6669876443           223455667 999999  8999999988999999998


Q ss_pred             cceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          201 DAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       201 ~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      +........ +..++.++.+.+.+ +++++.||.|.+||+.++....     +...|++++|+|.+           ++.
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG-----------~~v  177 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ-----------LAV  177 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE-----------EEE
T ss_pred             hhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc-----------eEE
Confidence            765444333 66678887776444 8888999999999999887642     55689999999985           567


Q ss_pred             EcCCCcEEEEeccCccc--cCCCcc-cc----cccccceeEEEcCCCCceecc
Q 019326          280 ASSDGVICVWDVRMAIK--EKPLPL-AE----AKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       280 ~~~dg~i~vwd~~~~~~--~~~~~~-~~----~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      |..||++++|+......  ...++. ..    ..+...|.++.|.+++.|++.
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            88899999998887542  111111 01    124567999999999998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.49  E-value=1.1e-16  Score=135.23  Aligned_cols=254  Identities=8%  Similarity=-0.019  Sum_probs=138.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++++.||.|+.||..+       ++     .+..+..  +++.+..+.  +..+++++.||.|+.||..+++.+..+.
T Consensus        11 ~v~~gs~dg~v~a~d~~t-------G~-----~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRT-------GS-----IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             EEEEEETTSEEEEEETTT-------CC-----EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             EEEEEcCCCEEEEEECCC-------CC-----EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            478999999999999887       32     2223332  334433333  5678888899999999999998877664


Q ss_pred             cCCCCCeE-EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           80 HHESSSVT-SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~-~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                      .+....+. +..+. .+     ..+++++.++.|+.||.++++.+..+..+.    ...++|++..+++++.|+.|+.||
T Consensus        77 ~~~~~~~~~sp~~~-~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           77 FTIPELVQASPCRS-SD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             CCHHHHHTTCSCC-----------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCC
T ss_pred             ccCccccccCceEe-cC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            33011110 00111 22     467888999999999999999988877554    234566788899999999999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCC----CCEEEEEeCCcEEEEEcccceeEEEecCCcceEEe-eecCCCeEEEE---eC
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGS----GEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCA-APGENGVLFTG---GE  230 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~---~~  230 (343)
                      .++++......... .....+.++    +..++...++.+..||..+++.+.......++..+ .++.+..+...   ..
T Consensus       147 ~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~  225 (369)
T 2hz6_A          147 TKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVA  225 (369)
T ss_dssp             SSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEE
T ss_pred             CCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeec
Confidence            99998765544321 112223332    44444448999999999999999888866666543 33333332110   01


Q ss_pred             CCcEEEEECCCCc----eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          231 DRSITAWDTNSGK----VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       231 dg~i~i~d~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ++.++.+|..+|+    .+.++..++  .+.+... .+ .         .|+.++.||.++.++...
T Consensus       226 ~~~l~~ld~~tG~~~~~~~W~~~~~~--~~~sp~~-~~-g---------~lyv~~~~G~l~al~~~~  279 (369)
T 2hz6_A          226 VETLRYLTFMSGEVGRITKWKYPFPK--ETEAKSK-LT-P---------TLYVGKYSTSLYASPSMV  279 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCCCC--HHHHHHH-SE-E---------EECBEECSSCEECCEEEE
T ss_pred             ccceeeeehhcCCcccceeeeeccCc--ccccccc-cc-c---------eEEEecccCCEEecCccc
Confidence            3456667766666    544443111  1110011 11 1         788888999999998874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.49  E-value=2e-11  Score=104.45  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=155.5

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC--eEEEEEccC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD--CLAMVNLVR  161 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--~i~~wd~~~  161 (343)
                      .....|+|++++     +++++...++.|++||..+++....... ..... ++|+++++.|+++..++  .|..++...
T Consensus       131 ~~P~~la~d~~g-----~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNN-----TVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTT-----EEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCC-----CEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence            467899999988     6677777779999999988765544443 33334 99999999998888766  899999877


Q ss_pred             CceeEEE----E-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE----ecCCc---ceEEeeecC-CC-eEE
Q 019326          162 GRRSFYH----K-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE----LDGKK---RILCAAPGE-NG-VLF  226 (343)
Q Consensus       162 ~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~----~~~~~---~i~~~~~~~-~~-~l~  226 (343)
                      +......    . ....+..++++|++..++++ .++.|..||..++.....    .....   +...+++++ ++ +++
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            6653333    2 33567789999965555557 778899999987653322    11111   122788875 44 455


Q ss_pred             EEeCCCcEEEEECCCCceeEEeccccc---------------ccEEEEEEEecCCCCCCCCCCeEEEEEc-CCCcEEEEe
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIEDAHS---------------ARVKGIVVLTKNDGGSTAENPYLVASAS-SDGVICVWD  290 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd  290 (343)
                      +-..++.|+.|+....  +..+. ++.               ....++++++++.         ++++-+ .+++|+.|+
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEE
T ss_pred             EeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEE
Confidence            5566789999997643  33332 221               3478999988876         888888 899999999


Q ss_pred             ccCccccCCCc---ccc-------cccccceeEEEcCCCCceeccccCCCCCC
Q 019326          291 VRMAIKEKPLP---LAE-------AKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       291 ~~~~~~~~~~~---~~~-------~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      +.++......-   ...       ...-.....+++++++.+.++......++
T Consensus       352 ~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          352 ILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             TTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             CCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            76653110000   000       00113578999999998888887766544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=3.4e-12  Score=108.45  Aligned_cols=260  Identities=12%  Similarity=0.039  Sum_probs=168.0

Q ss_pred             CceEEEeeC-C----CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----------CCCeEEEEE
Q 019326           52 GTAAASGGT-D----DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----------ADGFVSIFD  116 (343)
Q Consensus        52 ~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd  116 (343)
                      +..+++... +    +.|.++|..+++.+..+... ..+  .+.++|++     ++++++.          .++.|.++|
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDg-----k~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDG-----SFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTS-----SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCC-----CEEEEEeccccccccCCCCCEEEEEE
Confidence            455555444 2    69999999999999999876 455  89999999     6676665          467999999


Q ss_pred             CCCcceeeeeeec-------cccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcCCcceEEEEeCCC-CEE
Q 019326          117 ADPFVLLTSVKVH-------KKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSG-EKF  186 (343)
Q Consensus       117 ~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (343)
                      ..+++.+.++...       ......++|+|++++++++..  ++.|.+.|+.+++.+.....+..   ....|++ ..+
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~  232 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVF  232 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEE
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEE
Confidence            9999988887642       123456899999999998874  58899999999998877776543   2333333 333


Q ss_pred             EEE-eCCcEEEEEcccceeEEE----ec-CCcce-EEeeec-CCCeEEEEeCCCcEEEEECCCCcee--EEecc------
Q 019326          187 FMV-TEEKVGIHQAEDAKLLCE----LD-GKKRI-LCAAPG-ENGVLFTGGEDRSITAWDTNSGKVA--YCIED------  250 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~~~~----~~-~~~~i-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------  250 (343)
                      ++. .++.+.+.+..+++....    +. ...++ ..+.+. ++..++..+..+.|.+.|.......  ..+..      
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            333 677777777755554422    11 11111 122334 3455555567889999998755421  11110      


Q ss_pred             c---ccccEEEEEEEecCCCCCCCCCCeEEEEEcC----------CCcEEEEeccCccccCCCcccccccccceeEEEcC
Q 019326          251 A---HSARVKGIVVLTKNDGGSTAENPYLVASASS----------DGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       251 ~---h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                      .   .......+++++++.         .++....          ++.|.+.|+.+.+..     ..+..+.....++++
T Consensus       313 ~~g~~p~g~~~va~s~dg~---------rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~~P~gia~s  378 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSD---------RIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGHEIDSINVS  378 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGT---------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEEEECEEEEC
T ss_pred             ccccccCCceeeEEcCCCC---------EEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCCCcCeEEEc
Confidence            0   011122367888876         5555431          357999999987533     334444568899999


Q ss_pred             CCCc-eecccc-CCCCCCCcc
Q 019326          318 STKS-FKRPQI-GDSAPKGEE  336 (343)
Q Consensus       318 ~~~~-~~~~~~-~~~~~~~~~  336 (343)
                      +|++ +++... .++.+-..+
T Consensus       379 pDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          379 QDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             CSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEEcCCCCeEEEEE
Confidence            9998 665554 455444433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.47  E-value=1.5e-14  Score=122.12  Aligned_cols=194  Identities=14%  Similarity=0.122  Sum_probs=115.7

Q ss_pred             ecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec
Q 019326           50 VSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH  129 (343)
Q Consensus        50 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  129 (343)
                      ..++.+++++.||.|+.||..+|+.+..+..   ..+.+..+..++     ..+++++.||.|+.||..+++.+..+..+
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g-----~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEE-----PAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC----------CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCC-----CEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            3478899999999999999999999988865   334444445555     57888889999999999988887766543


Q ss_pred             cc-cEE-EEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEE
Q 019326          130 KK-GVN-DLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC  206 (343)
Q Consensus       130 ~~-~v~-~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~  206 (343)
                      .. .+. +..+. .+..+++++.++.++.||.++|+..........   ..++|++..++++ .++.+..||.++++.+.
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRW  154 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence            21 110 01111 345678888899999999999988766554432   3455677777777 88999999999998877


Q ss_pred             EecCCcceEEeeecC----CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEE
Q 019326          207 ELDGKKRILCAAPGE----NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       207 ~~~~~~~i~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                      .+.... .....+.+    ++.+++++.+|.|+.||..+++.+.+..  ...++..
T Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~  207 (369)
T 2hz6_A          155 NATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVA  207 (369)
T ss_dssp             EEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEE
T ss_pred             eEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEE
Confidence            665221 12222222    1578888999999999999999988877  4445543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.47  E-value=3.6e-10  Score=92.46  Aligned_cols=223  Identities=14%  Similarity=0.087  Sum_probs=148.6

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~  162 (343)
                      ..-..+..|+++.+    .++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..++
T Consensus        12 ~~~~Egp~w~~~~~----~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           12 CRCGESPVWEEVSN----SLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             CSBEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             CccccCCeEECCCC----EEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            44566889998652    5777777889999999987654 3333 4568999999999995554 4 568999999887


Q ss_pred             ceeEEEEcC-----CcceEEEEeCCCCEEEEE-eC---------CcEEEEEccc-ceeEEEecCCcceEEeeecC-CCeE
Q 019326          163 RRSFYHKIG-----KEASLIKFDGSGEKFFMV-TE---------EKVGIHQAED-AKLLCELDGKKRILCAAPGE-NGVL  225 (343)
Q Consensus       163 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~---------~~i~~~d~~~-~~~~~~~~~~~~i~~~~~~~-~~~l  225 (343)
                      +........     ..+..++++|+|+++++. ..         ....+|.+.. ++.............+++++ ++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence            754443322     236779999999977765 32         2345555542 33333333344567888884 4544


Q ss_pred             -EEEeCCCcEEEEEC--CCCce-----eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          226 -FTGGEDRSITAWDT--NSGKV-----AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       226 -~~~~~dg~i~i~d~--~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                       ++.+.++.|.+||+  .++..     +..+. .+...+.++++.+++.         +.++...++.|..||..+++..
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEE
Confidence             55666889999987  45543     22333 3445778899988776         7777777889999999876422


Q ss_pred             CCCcccccccc-cceeEEEcC-CCCceeccccC
Q 019326          298 KPLPLAEAKTN-SRLTCLAGS-STKSFKRPQIG  328 (343)
Q Consensus       298 ~~~~~~~~~~~-~~i~~~~~s-~~~~~~~~~~~  328 (343)
                      .     .+... ..+++++|. ++++.+.....
T Consensus       234 ~-----~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 Q-----TVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             E-----EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             E-----EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            2     22222 468999998 77665544443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=3.4e-11  Score=102.34  Aligned_cols=254  Identities=13%  Similarity=0.086  Sum_probs=169.5

Q ss_pred             CeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeeeeE
Q 019326           10 KFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus        10 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~~   77 (343)
                      +.|.++|..+            .+.+.++..-..+  .++++  +++|+++.          .++.|.++|..+++.+..
T Consensus        99 ~~VsVID~~t------------~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           99 TQQFVIDGST------------GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEEEEETTT------------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             CeEEEEECCC------------CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            6899999887            3334444433445  78888  77777775          467899999999998887


Q ss_pred             eccC-C-----CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeeeeeeccccEEEEEEecCC-CEEEEE
Q 019326           78 IHHH-E-----SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG-KLALTV  148 (343)
Q Consensus        78 ~~~~-~-----~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~  148 (343)
                      +... .     ......+.|+|++     ++++++..  ++.|.+.|+.+++.+.++.....    ....|++ ..+++.
T Consensus       165 I~v~g~~r~~~g~~P~~~~~spDG-----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          165 IELPDAPRFLVGTYQWMNALTPDN-----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             EEETTCCCCCBSCCGGGSEECTTS-----SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             EECCCccccccCCCcceEEEcCCC-----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            7521 0     1235678999999     78887764  57999999999998888874221    2333433 566777


Q ss_pred             eCCCeEEEEEccCCceeEEE----EcCC-c-ceEEEEeCCCCEEEEE-eCCcEEEEEcccceeE--EEecC---------
Q 019326          149 GRDDCLAMVNLVRGRRSFYH----KIGK-E-ASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL--CELDG---------  210 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~----~~~~-~-~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~--~~~~~---------  210 (343)
                      +.||.+.+.++.+++.....    .... + ...+.+.+++..++.. ..+.+.+.|.......  ..+..         
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g  315 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD  315 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence            78888888888655544221    1111 1 1235678888877777 7788999998654422  11110         


Q ss_pred             --CcceEEeeec-CCCeEEEEeC----------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          211 --KKRILCAAPG-ENGVLFTGGE----------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       211 --~~~i~~~~~~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                        ......+.++ +++.+++...          ++.|.++|..+.+.+.++.  -.....+++|+++++.        ++
T Consensus       316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~--vg~~P~gia~spDg~~--------~l  385 (426)
T 3c75_H          316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE--LGHEIDSINVSQDAEP--------LL  385 (426)
T ss_dssp             EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSC--------EE
T ss_pred             cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE--CCCCcCeEEEccCCCE--------EE
Confidence              0111124555 4455554432          3579999999999999997  3346889999888641        56


Q ss_pred             EEEc-CCCcEEEEeccCccc
Q 019326          278 ASAS-SDGVICVWDVRMAIK  296 (343)
Q Consensus       278 ~s~~-~dg~i~vwd~~~~~~  296 (343)
                      ++.. .++.|.++|+.+.+.
T Consensus       386 yv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEETTTTEEEEEETTTCCE
T ss_pred             EEEcCCCCeEEEEECCCCCE
Confidence            6665 699999999998753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=1.2e-09  Score=87.91  Aligned_cols=219  Identities=11%  Similarity=0.038  Sum_probs=143.2

Q ss_pred             CCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           43 SPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        43 ~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ..+..++++  ++.| ++-...+.|..++.+.......+... ......+++.+.+.    ..+++-...+.|.+++++.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~----~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGR----TIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTT----EEEEEETTTTEEEEEETTS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCC----eEEEEECCCCEEEEEEcCC
Confidence            356788887  4444 45555789999999865443333333 35788999998651    4555555678999999875


Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eCCc
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGR---DDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      ................++++|++..|+.+..   .+.|..+++........... ...+..+++++++..++.+  ..+.
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~  190 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence            3322222222246789999997655555543   36888888764332222212 2457889999988877777  6688


Q ss_pred             EEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          194 VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      |.+++.........+........++...+.++++....+.|..+|..+++.+..+..+......++++.|++.
T Consensus       191 I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          191 AECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            9999987655444444333445666654445555556789999999999988888733223577888887764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.44  E-value=6.5e-11  Score=107.57  Aligned_cols=265  Identities=15%  Similarity=0.185  Sum_probs=169.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC----------CCe-EEEEecCceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL----------SPI-TTVAVSGTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~----------~~v-~~l~~~~~~l~s~~~dg~i~iwd~~   70 (343)
                      .|++++.++.|+.+|..+       ++..     .++....          ..+ ..+++.+..++.++.|+.|..+|..
T Consensus        68 ~vyv~~~~~~v~AlD~~t-------G~~~-----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~  135 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAAS-------GKEL-----WRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAK  135 (668)
T ss_dssp             EEEEEEGGGEEEEEETTT-------CCEE-----EEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCeEEEEECCC-------Chhc-----eEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECC
Confidence            366777888898888876       3222     1111110          011 1234457788889999999999999


Q ss_pred             CCeeeeEeccCCC---CCeEE-EEEeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeecc----------
Q 019326           71 TSSSLGAIHHHES---SSVTS-LAFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVHK----------  130 (343)
Q Consensus        71 ~~~~~~~~~~~~~---~~v~~-l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~----------  130 (343)
                      +|+.+..+.....   ..+.+ -... ++      .++.+..      +|.|+.+|.++++.+..+....          
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~P~v~-~~------~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          136 TGKAIWSQQTTDPAKPYSITGAPRVV-KG------KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEEE-TT------EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             CCCEeeeeccCCCCCcceecCCCEEE-CC------EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence            9999988765311   11111 0111 33      5555543      5899999999999988875311          


Q ss_pred             ---------------------ccEEEEEEecCCCEEEEEeCCC-------------------eEEEEEccCCceeEEEEc
Q 019326          131 ---------------------KGVNDLAVHHSGKLALTVGRDD-------------------CLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       131 ---------------------~~v~~i~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~~  170 (343)
                                           .....++++|+...++.+..++                   .|..+|.++++.......
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                                 0112468888888888888776                   399999999998887765


Q ss_pred             C----------CcceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEecCCc-------------ce---------
Q 019326          171 G----------KEASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCELDGKK-------------RI---------  214 (343)
Q Consensus       171 ~----------~~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~-------------~i---------  214 (343)
                      .          .++....+..+++   .++.+ .++.+.++|..+++.+...+...             ++         
T Consensus       289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  368 (668)
T 1kv9_A          289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK  368 (668)
T ss_dssp             STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred             CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence            3          1222233334564   45555 89999999999999875433110             00         


Q ss_pred             ---------------EEeeecC-CCeEEE------------------------------------EeCCCcEEEEECCCC
Q 019326          215 ---------------LCAAPGE-NGVLFT------------------------------------GGEDRSITAWDTNSG  242 (343)
Q Consensus       215 ---------------~~~~~~~-~~~l~~------------------------------------~~~dg~i~i~d~~~~  242 (343)
                                     ..+++++ .++++.                                    ...+|.|..||+.++
T Consensus       369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG  448 (668)
T 1kv9_A          369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ  448 (668)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred             CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence                           0123332 223332                                    113488999999999


Q ss_pred             ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          243 KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       243 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      +.+.+..  +..+.....+...+.         +++.++.||.|+.||.++++.
T Consensus       449 ~~~W~~~--~~~~~~~~~~~t~gg---------~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          449 KAAWKVP--YPTHWNGGTLSTAGN---------LVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEEE--ESSSCCCCEEEETTT---------EEEEECTTSEEEEEETTTCCE
T ss_pred             cEEEEcc--CCCCCcCceeEeCCC---------EEEEECCcccchhhhhhcChh
Confidence            9998887  333344334444554         899999999999999998853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.41  E-value=2.5e-11  Score=101.41  Aligned_cols=229  Identities=10%  Similarity=0.042  Sum_probs=146.7

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----------CCCeEEEEECCCcceeeeeeecc--
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----------ADGFVSIFDADPFVLLTSVKVHK--  130 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~--  130 (343)
                      .|.++|..+++.+..+... ..+  .+.++|++     ++++++.          .++.|.+||+.+++.+.++....  
T Consensus        47 ~vsvID~~t~~v~~~i~vG-~~P--~i~~spDg-----~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA-FLS--LAVAGHSG-----SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC-TTC--EEEECTTS-----SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred             eEEEEECCCCeEEEEEeCC-CCC--ceEECCCC-----CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence            8889999999999999876 555  79999999     6777765          47899999999999999987541  


Q ss_pred             -----ccEEEEEEecCCCEEEEEeC--CCeEEE--EEccCCceeEEEEcCCc--------ceEEEEeCCCCE--------
Q 019326          131 -----KGVNDLAVHHSGKLALTVGR--DDCLAM--VNLVRGRRSFYHKIGKE--------ASLIKFDGSGEK--------  185 (343)
Q Consensus       131 -----~~v~~i~~~~~~~~l~~~~~--d~~i~~--wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------  185 (343)
                           .....++++|+|++++++..  +..+.+  +|+.+   +.....+..        -.-+.++++++.        
T Consensus       119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~  195 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred             ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccc
Confidence                 23567999999999998875  467888  88876   222222111        001122222222        


Q ss_pred             -----------------------------EEEE-eCCcEEEEEcccce--eEEEecCC-----------cceEEeeec-C
Q 019326          186 -----------------------------FFMV-TEEKVGIHQAEDAK--LLCELDGK-----------KRILCAAPG-E  221 (343)
Q Consensus       186 -----------------------------~~~~-~~~~i~~~d~~~~~--~~~~~~~~-----------~~i~~~~~~-~  221 (343)
                                                   ++.. . +.+.+.|.....  .+..+...           .....+.++ +
T Consensus       196 ~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             cccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence                                         2222 3 445555554321  22211100           001114455 4


Q ss_pred             CCeEEEEeC---------CCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc-CCCcEEEEec
Q 019326          222 NGVLFTGGE---------DRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS-SDGVICVWDV  291 (343)
Q Consensus       222 ~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~vwd~  291 (343)
                      ++.++.+..         ++.+.++|+.+++.+..+. . .....+|++++++..        ++++.. .++.|.++|+
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-v-g~~p~gi~~s~Dg~~--------l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-N-GHDSDAIIAAQDGAS--------DNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-E-EEEECEEEECCSSSC--------EEEEEETTTTEEEEEES
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-C-CCCcceEEECCCCCE--------EEEEccCCCCeEEEEEC
Confidence            555665432         2356699999999999887 2 236899999998751        566666 5999999999


Q ss_pred             cCccccCCCcccccccccceeEEEcCC
Q 019326          292 RMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      .+.+...     .+..+.....+++.+
T Consensus       345 ~t~kvv~-----~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          345 ASDQDQS-----SVELDKGPESLSVQN  366 (368)
T ss_dssp             SSCEEEE-----ECCCCSCCCEEECCC
T ss_pred             CCCcEEE-----EEECCCCCCEEEeec
Confidence            9986433     334444455565543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.41  E-value=1.1e-09  Score=95.33  Aligned_cols=238  Identities=11%  Similarity=0.112  Sum_probs=169.0

Q ss_pred             EEEEe-----cCceEEEeeC-CCeEEEEEcCCCeeeeEeccCCCCCeEEEEE-e-CCCCCCCCceEEEee----------
Q 019326           46 TTVAV-----SGTAAASGGT-DDTIHLYDLSTSSSLGAIHHHESSSVTSLAF-Y-TPQNLSVPRNLFSTS----------  107 (343)
Q Consensus        46 ~~l~~-----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~-~-~~~~~~~~~~l~s~~----------  107 (343)
                      ..+++     +|++++.... ++.|.+.|+++.++...+.-........+++ . |++     +++++++          
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-----~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-----NYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-----SEEEEEECSCEESSCSS
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-----cEEEEecccccccCCCC
Confidence            45556     3566666554 5679999999999888554321356888988 4 788     6787774          


Q ss_pred             --------CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC---------------------------
Q 019326          108 --------ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD---------------------------  152 (343)
Q Consensus       108 --------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---------------------------  152 (343)
                              .++.+.+.|.++++...++.--. ....++++|+|+++++.+.+.                           
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             cccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence                    35689999999999888887433 456788999999998888553                           


Q ss_pred             -----------eEEEEEccC--Cce-eEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccce------------e
Q 019326          153 -----------CLAMVNLVR--GRR-SFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK------------L  204 (343)
Q Consensus       153 -----------~i~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~------------~  204 (343)
                                 .|.+.|.++  ++. +.....+..+.++.++|||++++++  .+..+.++|+.+.+            .
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                       377888877  555 5667777888999999999999988  78999999999763            4


Q ss_pred             EEEecCCcceEEeeecCCCeE-EEEeCCCcEEEEECCC----------CceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          205 LCELDGKKRILCAAPGENGVL-FTGGEDRSITAWDTNS----------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       205 ~~~~~~~~~i~~~~~~~~~~l-~~~~~dg~i~i~d~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      ...+.-......++|++++.+ ++...|+.|.+||+.+          .+.+.++. .|-.+-. ..++ .  .....+|
T Consensus       324 ~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh-~~~~-~--g~t~~~D  398 (595)
T 1fwx_A          324 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGH-LKTV-M--GETLDAT  398 (595)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEE-EEET-T--TTSTTCC
T ss_pred             EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-ccccccc-ceec-c--ceEeCCC
Confidence            455555567888889854344 4566799999999976          55666666 4433221 1111 1  1234677


Q ss_pred             CeEEEEEcC---CCcE----------EEEeccCc
Q 019326          274 PYLVASASS---DGVI----------CVWDVRMA  294 (343)
Q Consensus       274 ~~~l~s~~~---dg~i----------~vwd~~~~  294 (343)
                      |++|+++..   |+.+          .++|+..+
T Consensus       399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             CCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence            779988753   4331          88999544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.40  E-value=1e-09  Score=91.03  Aligned_cols=216  Identities=10%  Similarity=-0.010  Sum_probs=140.5

Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR  164 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~  164 (343)
                      ......|+|++.    .++++...++.|..||..+++. ..+. ....+.+++++++++++++. . ..|.+||..+++.
T Consensus        50 ~~egp~~~~~~~----~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~  121 (326)
T 2ghs_A           50 LGEGPTFDPASG----TAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVL  121 (326)
T ss_dssp             BEEEEEEETTTT----EEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCE
T ss_pred             CCcCCeEeCCCC----EEEEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcE
Confidence            456788999752    5777777889999999987653 3333 35679999999999877654 3 4599999988875


Q ss_pred             eEEEEcC-----CcceEEEEeCCCCEEEEEe-C------CcEEEEEcccceeEEEecCCcceEEeeecC-CCeE-EEEeC
Q 019326          165 SFYHKIG-----KEASLIKFDGSGEKFFMVT-E------EKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVL-FTGGE  230 (343)
Q Consensus       165 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~~~~~  230 (343)
                      .......     ..+..++++|+|+++++.. +      +.|..++  +++.............+++++ ++.+ ++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            4433321     2467899999999776653 2      3455555  454433323333466788884 4555 44456


Q ss_pred             CCcEEEEECC--CC-c-----eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc
Q 019326          231 DRSITAWDTN--SG-K-----VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL  302 (343)
Q Consensus       231 dg~i~i~d~~--~~-~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  302 (343)
                      ++.|.+||+.  ++ +     .+..+. .....+.++++.+++.         ++++...++.|.+||.. +....    
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~~-g~~~~----  264 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDTD-GNHIA----  264 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECTT-CCEEE----
T ss_pred             CCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECCC-CCEEE----
Confidence            7899999986  55 3     122332 3345567888877775         67666667889999984 32111    


Q ss_pred             ccccc-ccceeEEEcC-CCCceeccc
Q 019326          303 AEAKT-NSRLTCLAGS-STKSFKRPQ  326 (343)
Q Consensus       303 ~~~~~-~~~i~~~~~s-~~~~~~~~~  326 (343)
                       .+.. ...+.+++|+ +++..+...
T Consensus       265 -~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          265 -RYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             -EEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             -EEECCCCCcEEEEEecCCCCEEEEE
Confidence             1111 2358999998 776655433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=2.3e-10  Score=95.70  Aligned_cols=240  Identities=10%  Similarity=0.019  Sum_probs=149.9

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEee--CCCeEEEEEcCCCeeeeEec-------cCCCCCeEEEEEeCCCCCCCC
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGG--TDDTIHLYDLSTSSSLGAIH-------HHESSSVTSLAFYTPQNLSVP  100 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~~~  100 (343)
                      ++.+..+.   ..+..++++  ++.+++..  .++.++||.+.+++.. .+.       .+ ...+..+++.+++     
T Consensus         9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~-~~~p~gv~~d~~g-----   78 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIIT-FDTVLGIKSDGNG-----   78 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCC-CSCEEEEEECSSS-----
T ss_pred             eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccc-eeEeeEEEEcCCC-----
Confidence            34444433   678999998  66777753  2343566666555433 221       23 4689999999988     


Q ss_pred             ceEEEeeC-----CCeEEEEECCCcceeeeeeec------cccEEEEEEecCCCE-EEEEe---CCCeEEEEEccCCcee
Q 019326          101 RNLFSTSA-----DGFVSIFDADPFVLLTSVKVH------KKGVNDLAVHHSGKL-ALTVG---RDDCLAMVNLVRGRRS  165 (343)
Q Consensus       101 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~-l~~~~---~d~~i~~wd~~~~~~~  165 (343)
                      +++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++.. +++..   .++.|.+||+.+++..
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~  158 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA  158 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence            55444333     578999999988877766532      235688999986544 45544   5789999999877654


Q ss_pred             EEEEc------------------------------CCcceEEEEeCCCCEEEEE-e-CCcEEEEEcccc---e-------
Q 019326          166 FYHKI------------------------------GKEASLIKFDGSGEKFFMV-T-EEKVGIHQAEDA---K-------  203 (343)
Q Consensus       166 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-~-~~~i~~~d~~~~---~-------  203 (343)
                      .....                              ...+..++++|+++.++.+ . ...+..++....   .       
T Consensus       159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence            33211                              0124679999999988887 3 335555553211   0       


Q ss_pred             -eEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          204 -LLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       204 -~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                       .+..+.+......++++ +++++++...++.|.+||..+++........+...+.++++.+++.         ++++.+
T Consensus       239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~---------l~v~~~  309 (343)
T 2qe8_A          239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY---------LYFDCN  309 (343)
T ss_dssp             TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC---------EEEEEC
T ss_pred             cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc---------EEEEeC
Confidence             01111122234557776 4567777778899999998556643333312345688999987765         777776


Q ss_pred             CCCcEEEEe
Q 019326          282 SDGVICVWD  290 (343)
Q Consensus       282 ~dg~i~vwd  290 (343)
                      ..+.+.+|.
T Consensus       310 ~~~~~~~f~  318 (343)
T 2qe8_A          310 QLHHSAPLN  318 (343)
T ss_dssp             CGGGSGGGB
T ss_pred             ccccccccc
Confidence            555544443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.40  E-value=3.2e-10  Score=101.00  Aligned_cols=232  Identities=14%  Similarity=0.077  Sum_probs=153.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC--CCeEE-EEecCceEEEeeC------CCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL--SPITT-VAVSGTAAASGGT------DDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~~~------dg~i~iwd~~~~   72 (343)
                      +|++++.|+.|..+|..+       ++..-....   ..+.  ..+.+ ....+..++.++.      ++.|..+|..++
T Consensus       117 ~v~v~~~dg~l~alD~~t-------G~~~W~~~~---~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKT-------GKINWEVEV---CDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEEC---CCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             EEEEEeCCCEEEEEECCC-------CCEEEEecC---CCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCC
Confidence            467888899999999877       333222111   1111  01211 1123556666655      799999999999


Q ss_pred             eeeeEeccCCCCC-------------------------------------e-EEEEEeCCCCCCCCceEEEeeCC-----
Q 019326           73 SSLGAIHHHESSS-------------------------------------V-TSLAFYTPQNLSVPRNLFSTSAD-----  109 (343)
Q Consensus        73 ~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~~~~~~~~~l~s~~~d-----  109 (343)
                      +.+..+... ...                                     + ..+++.+..     ..++.+..+     
T Consensus       187 ~~~W~~~~~-~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-----g~vy~~~g~~~~~~  260 (571)
T 2ad6_A          187 ELKWRAFAT-GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-----NLFYYGSGNPAPWN  260 (571)
T ss_dssp             CEEEEEESS-SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-----TEEEEECCCCSCSC
T ss_pred             cEEEEEccC-CCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-----CeEEEECCCCcccc
Confidence            998877643 111                                     0 124555554     455555432     


Q ss_pred             -----------CeEEEEECCCcceeeeeeecc----------ccEEEEEEecCCC---EEEEEeCCCeEEEEEccCCcee
Q 019326          110 -----------GFVSIFDADPFVLLTSVKVHK----------KGVNDLAVHHSGK---LALTVGRDDCLAMVNLVRGRRS  165 (343)
Q Consensus       110 -----------g~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~  165 (343)
                                 +.|..+|.++++.+..++...          .++. +....+|+   .++.++.+|.++++|..+++.+
T Consensus       261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence                       369999999999988876321          2221 22334673   5778889999999999999987


Q ss_pred             EEEEcCCcc----------------------------------------eEEEEeCCCCEEEEE-e--------------
Q 019326          166 FYHKIGKEA----------------------------------------SLIKFDGSGEKFFMV-T--------------  190 (343)
Q Consensus       166 ~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~-~--------------  190 (343)
                      ........+                                        ..++++|+...+++. .              
T Consensus       340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~  419 (571)
T 2ad6_A          340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR  419 (571)
T ss_dssp             EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence            766543210                                        235788887777665 2              


Q ss_pred             -----------------------CCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          191 -----------------------EEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       191 -----------------------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                                             ++.+..+|..+++.+.++....++....+. .++.++.++.||.|+.||.++++.+.
T Consensus       420 ~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          420 AGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             TTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence                                   367899999999998887754443332222 56788889999999999999999999


Q ss_pred             Eecc
Q 019326          247 CIED  250 (343)
Q Consensus       247 ~~~~  250 (343)
                      ++..
T Consensus       500 ~~~~  503 (571)
T 2ad6_A          500 NFKM  503 (571)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8873

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.39  E-value=1.4e-10  Score=106.25  Aligned_cols=236  Identities=13%  Similarity=0.155  Sum_probs=145.0

Q ss_pred             CCCCCeEEEEec--CceEEE-----eeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--
Q 019326           40 AHLSPITTVAVS--GTAAAS-----GGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--  110 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--  110 (343)
                      +|...+..++|+  |++||.     |+....|++||+.+++.+.... . ......++|+ ++     +.|+.++.+.  
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-~~k~~~~~Ws-Dg-----~~l~y~~~~~~~  197 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-DVKFSGISWL-GN-----EGFFYSSYDKPD  197 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-EEESCCCEEE-TT-----TEEEEEESSCCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C-CceeccEEEe-CC-----CEEEEEEecCcc
Confidence            455678888998  777773     3334679999999998654321 1 1113567899 88     6788777764  


Q ss_pred             -----------eEEEEECCCcce----eeeeee-ccccEEEEEEecCCCEEEEEeC----CCeEEEEEccCCc-eeEEEE
Q 019326          111 -----------FVSIFDADPFVL----LTSVKV-HKKGVNDLAVHHSGKLALTVGR----DDCLAMVNLVRGR-RSFYHK  169 (343)
Q Consensus       111 -----------~i~iwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~l~~~~~----d~~i~~wd~~~~~-~~~~~~  169 (343)
                                 .|++|++.+.+.    +..... |.....++.|+|++++|+....    ++.|+++|+.++. ......
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                       399999976542    222233 4445788999999998765443    3589999998764 222222


Q ss_pred             cC-CcceEEEEeCCCCEEEEE-e----CCcEEEEEccccee---EEEecCCcceEEeeecCCCeEEE-EeCCC--cEEEE
Q 019326          170 IG-KEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAKL---LCELDGKKRILCAAPGENGVLFT-GGEDR--SITAW  237 (343)
Q Consensus       170 ~~-~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~---~~~~~~~~~i~~~~~~~~~~l~~-~~~dg--~i~i~  237 (343)
                      .. ...... +++++..++.. .    ...|..+++.++..   .....+...+..+.. .++.|+. ...++  .|++|
T Consensus       278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~-~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHS-GSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE-ETTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEE-ECCEEEEEEEECCeeEEEEE
Confidence            22 223333 66777766555 2    25788899887654   223334444434333 4455544 44454  68899


Q ss_pred             ECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC---CCcEEEEeccCc
Q 019326          238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS---DGVICVWDVRMA  294 (343)
Q Consensus       238 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~  294 (343)
                      |+.. .....+.......+..+.+++++..        ++++.+.   -+.|..||+.++
T Consensus       356 d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~--------l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          356 DYEG-KRVREVALPGLGSVSGFNGKHDDPA--------LYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CTTS-CEEEEECCSSSSEEEECCCCTTCSC--------EEEEEECSSSCCEEEEECTTTC
T ss_pred             ECCC-CeeEEeecCCCceEEeeecCCCCCE--------EEEEecCCCCCCEEEEEECCCC
Confidence            9874 4455554234456666666655541        3333332   278999998765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.38  E-value=3.2e-10  Score=101.03  Aligned_cols=270  Identities=14%  Similarity=0.053  Sum_probs=166.9

Q ss_pred             eeEEecc-CCeEEEEEe-ecCCCCCCCCcceeeEEeEE-ecCCC-----CCeEEEEecCceEEEeeCCCeEEEEEcCCCe
Q 019326            2 SLIAGSY-EKFIWGYKL-KPSNHYSSDQKTLTLTQLFS-YPAHL-----SPITTVAVSGTAAASGGTDDTIHLYDLSTSS   73 (343)
Q Consensus         2 ~l~~g~~-d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~-~~~h~-----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~   73 (343)
                      +|++++. ++.|+.+|. .+       ++..-...... ...+.     ..-..+++.+..++.++.|+.|..+|..+|+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~t-------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~  136 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDP-------GKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCT-------TSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEeCCCCEEEEEeCCCC-------ccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCC
Confidence            3566676 788999998 66       33221111100 00000     0011234557788889999999999999999


Q ss_pred             eeeEeccCCC----CCeEE-EEEeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeecccc----------
Q 019326           74 SLGAIHHHES----SSVTS-LAFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVHKKG----------  132 (343)
Q Consensus        74 ~~~~~~~~~~----~~v~~-l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------  132 (343)
                      .+..+... .    ..+.+ -... ++      .++.++.      ++.|..+|.++++.+.++......          
T Consensus       137 ~~W~~~~~-~~~~~~~~~~~P~v~-~g------~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~  208 (571)
T 2ad6_A          137 INWEVEVC-DPKVGSTLTQAPFVA-KD------TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN  208 (571)
T ss_dssp             EEEEEECC-CGGGTCBCCSCCEEE-TT------EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             EEEEecCC-CCCccceeccCCEEE-CC------EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence            98877543 1    01211 1111 33      5555554      799999999999988877632111          


Q ss_pred             ----------------------------EEEEEEecCCCEEEEEeCC----------------CeEEEEEccCCceeEEE
Q 019326          133 ----------------------------VNDLAVHHSGKLALTVGRD----------------DCLAMVNLVRGRRSFYH  168 (343)
Q Consensus       133 ----------------------------v~~i~~~~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~  168 (343)
                                                  ...+++.++...++.+..+                +.|..+|.++++.+...
T Consensus       209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~  288 (571)
T 2ad6_A          209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY  288 (571)
T ss_dssp             TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence                                        0135667766667666532                36999999999988776


Q ss_pred             EcCC----------cceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEecCCc--------------ce------
Q 019326          169 KIGK----------EASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCELDGKK--------------RI------  214 (343)
Q Consensus       169 ~~~~----------~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------------~i------  214 (343)
                      ....          ....+....+++   .++.+ .++.+.++|..+++.+...+...              ++      
T Consensus       289 ~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~  368 (571)
T 2ad6_A          289 QKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA  368 (571)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred             cCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccC
Confidence            6431          122233334664   45555 78899999999999887765211              11      


Q ss_pred             --------------------EEeeecC-CCeEEEEe-------------------------------------CCCcEEE
Q 019326          215 --------------------LCAAPGE-NGVLFTGG-------------------------------------EDRSITA  236 (343)
Q Consensus       215 --------------------~~~~~~~-~~~l~~~~-------------------------------------~dg~i~i  236 (343)
                                          ..+++++ .+++++..                                     .+|.|..
T Consensus       369 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a  448 (571)
T 2ad6_A          369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA  448 (571)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred             CCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEE
Confidence                                1123332 24444432                                     3578999


Q ss_pred             EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       237 ~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                      ||..+++.+.++.  +...+.+..+...+.         .++.++.||.|+.||.++++..
T Consensus       449 ~D~~tG~~~W~~~--~~~~~~~~~~~t~gg---------~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          449 FDLTTGKAKWTKW--EKFAAWGGTLYTKGG---------LVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             ECTTTCCEEEEEE--ESSCCCSBCEEETTT---------EEEEECTTSEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEec--CCCCccceeEEECCC---------EEEEEcCCCeEEEEECCCCCEE
Confidence            9999999988887  333333333333333         7888999999999999998633

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.37  E-value=1.6e-09  Score=85.76  Aligned_cols=207  Identities=11%  Similarity=-0.031  Sum_probs=148.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEEe
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVG  149 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~  149 (343)
                      +.+.++..........+.|++++     .++++.+.  ++.|.++|+.+++.+..+..... ....+++.. +...++.-
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg-----~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEND-----TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVW   83 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTT-----EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEET
T ss_pred             eEEEEEECCCCCCcccEEEeCCC-----eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEe
Confidence            44555543212346899999877     45555443  67999999999999888763222 233456653 23444445


Q ss_pred             CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC---c---ceEEeeecCC
Q 019326          150 RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK---K---RILCAAPGEN  222 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~---~i~~~~~~~~  222 (343)
                      .++.+.++|..+.+.+..+..+ ......+++++..++++ .++.+.++|..+.+....+.-.   .   .++.+.+.++
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg  162 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING  162 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred             cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence            6899999999999988877766 22335566788888888 8889999999999988887722   2   3567777655


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeEEecccc------------cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAH------------SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       223 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      ...+....++.|.+.|..+++.+..+..+.            ....++|++++++.        ++++++...+.|.+-+
T Consensus       163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEETTCSEEEEEE
T ss_pred             EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECCCCCeEEEEE
Confidence            444444467899999999999999887321            13568999999875        2778888889999999


Q ss_pred             ccCc
Q 019326          291 VRMA  294 (343)
Q Consensus       291 ~~~~  294 (343)
                      +...
T Consensus       235 l~~~  238 (266)
T 2iwa_A          235 LHLV  238 (266)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            9864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.37  E-value=1.6e-09  Score=96.52  Aligned_cols=233  Identities=13%  Similarity=0.082  Sum_probs=151.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEee------CCCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGG------TDDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~------~dg~i~iwd~~~~~~   74 (343)
                      +|++++.|+.|..+|..+       ++..-........ ....+++ -...+..+++++      .+|.|+.+|..+|+.
T Consensus       123 rV~v~t~dg~l~AlDa~T-------G~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAET-------GETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEEEcCCCEEEEEECCC-------CCEEEeecCCCCC-ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcE
Confidence            388899999999999877       3332221111100 0001111 112245666655      389999999999999


Q ss_pred             eeEeccCCCCC-------------------------------------e-EEEEEeCCCCCCCCceEEEeeCC-------
Q 019326           75 LGAIHHHESSS-------------------------------------V-TSLAFYTPQNLSVPRNLFSTSAD-------  109 (343)
Q Consensus        75 ~~~~~~~~~~~-------------------------------------v-~~l~~~~~~~~~~~~~l~s~~~d-------  109 (343)
                      +..+... ...                                     + ..+++.+..     .+++.+..+       
T Consensus       195 ~W~~~~~-~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-----g~vy~g~g~~~p~~~~  268 (599)
T 1w6s_A          195 VWRAYAT-GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-----NLIYFGTGNPAPWNET  268 (599)
T ss_dssp             EEEEESS-SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-----TEEEEECCCCSCSCGG
T ss_pred             EEEEcCC-CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-----CEEEEeCCCCccccCc
Confidence            9887643 111                                     0 123455555     466666654       


Q ss_pred             ---------CeEEEEECCCcceeeeeeeccc----------cEEEEEEe-cCC---CEEEEEeCCCeEEEEEccCCceeE
Q 019326          110 ---------GFVSIFDADPFVLLTSVKVHKK----------GVNDLAVH-HSG---KLALTVGRDDCLAMVNLVRGRRSF  166 (343)
Q Consensus       110 ---------g~i~iwd~~~~~~~~~~~~~~~----------~v~~i~~~-~~~---~~l~~~~~d~~i~~wd~~~~~~~~  166 (343)
                               +.|..+|.++++.+..++....          ++. +... .+|   ..++.++.+|.++++|.++++.+.
T Consensus       269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                     4899999999999888774321          222 2222 456   567778899999999999999877


Q ss_pred             EEEcCCc----------------------------------------ceEEEEeCCCCEEEEE-----------------
Q 019326          167 YHKIGKE----------------------------------------ASLIKFDGSGEKFFMV-----------------  189 (343)
Q Consensus       167 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~-----------------  189 (343)
                      .......                                        -..++++|+..++++.                 
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            6553220                                        0235667766655442                 


Q ss_pred             -----------------------eCCcEEEEEcccceeEEEecCCcceEEeee-cCCCeEEEEeCCCcEEEEECCCCcee
Q 019326          190 -----------------------TEEKVGIHQAEDAKLLCELDGKKRILCAAP-GENGVLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       190 -----------------------~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                                             ..+.+..||+.+++.+.+.+...+...-.+ ..+++++.++.||.++.||.++|+.+
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                                   125788899999998888764333221111 25778888999999999999999999


Q ss_pred             EEec
Q 019326          246 YCIE  249 (343)
Q Consensus       246 ~~~~  249 (343)
                      .+++
T Consensus       508 W~~~  511 (599)
T 1w6s_A          508 WKFK  511 (599)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9887

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.35  E-value=4.1e-10  Score=92.53  Aligned_cols=229  Identities=14%  Similarity=0.060  Sum_probs=147.8

Q ss_pred             eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCe
Q 019326           74 SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        74 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                      .+..+... ........|+++++    .++++...++.|..|+.. ++ ...+..+...+..++++++|+++++...++.
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~----~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQR----TLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGT----EEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             ceEEEecC-CcCccCCeEeCCCC----EEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence            33444444 46678899999982    367788888999999984 44 4556666778899999999997776666789


Q ss_pred             EEEEEccCCceeEEEEc-C----CcceEEEEeCCCCEEEE----Ee--------------CCcEEEEEcccceeEEEecC
Q 019326          154 LAMVNLVRGRRSFYHKI-G----KEASLIKFDGSGEKFFM----VT--------------EEKVGIHQAEDAKLLCELDG  210 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~----~~--------------~~~i~~~d~~~~~~~~~~~~  210 (343)
                      |..|+.. ++....... .    ..+..++++++|+.+++    +.              .+.|..+|..+++..... .
T Consensus       109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~  186 (305)
T 3dr2_A          109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D  186 (305)
T ss_dssp             EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred             EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence            9999986 543322211 1    23567999999998875    21              245777777666554433 3


Q ss_pred             CcceEEeeecC-CCeEEEEeCC------CcEEEEECCCCceeE---EecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          211 KKRILCAAPGE-NGVLFTGGED------RSITAWDTNSGKVAY---CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       211 ~~~i~~~~~~~-~~~l~~~~~d------g~i~i~d~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ......+++++ ++.|+.+...      +.|.+|++..+. +.   .+.......+..+++.+++.          |..+
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~----------lwv~  255 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW----------LWSS  255 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC----------EEEC
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC----------EEEe
Confidence            34567788884 5567666554      789999987554 21   11111233445677777664          4444


Q ss_pred             cCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCC
Q 019326          281 SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGD  329 (343)
Q Consensus       281 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~  329 (343)
                      +.+| |.+|+....      .+..+.....+.+++|++++..+.....+
T Consensus       256 ~~~g-v~~~~~~g~------~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          256 SGTG-VCVFDSDGQ------LLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             CSSE-EEEECTTSC------EEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             cCCc-EEEECCCCC------EEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            4554 999998532      22223333358889999888766655544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.34  E-value=1.8e-09  Score=96.35  Aligned_cols=233  Identities=15%  Similarity=0.124  Sum_probs=147.0

Q ss_pred             EecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCC----CeE-EEEEeCCCCCCCCc-eEEEee------CCCeEEEEE
Q 019326           49 AVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESS----SVT-SLAFYTPQNLSVPR-NLFSTS------ADGFVSIFD  116 (343)
Q Consensus        49 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v~-~l~~~~~~~~~~~~-~l~s~~------~dg~i~iwd  116 (343)
                      ++.+..++.++.|+.|..+|..+|+.+..+... ..    .+. .-....+.  ..++ .+++++      .++.|+.+|
T Consensus       114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~-~~~~~~~~~~sP~v~~~~--~~G~~~v~vg~~~~e~~~~g~v~alD  190 (582)
T 1flg_A          114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA-DHGAGYTMTGAPTIVKDG--KTGKVLLIHGSSGDEFGVVGRLFARD  190 (582)
T ss_dssp             EEETTEEEEEETTTEEEEEESSSCCEEEEEECS-CGGGTCBCCSCCEEEECT--TTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEeeecCC-CCCcCcccccCCEEeCCC--cCCcEEEEEeccccccCCCCEEEEEE
Confidence            445778888999999999999999998887543 10    111 11111110  0002 566665      378999999


Q ss_pred             CCCcceeeeeeeccccE-----------------------------------------EEEEEecCCCEEEEEeC-----
Q 019326          117 ADPFVLLTSVKVHKKGV-----------------------------------------NDLAVHHSGKLALTVGR-----  150 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~l~~~~~-----  150 (343)
                      ..+++.+.........+                                         ..++++|....++.+..     
T Consensus       191 ~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~  270 (582)
T 1flg_A          191 PDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPW  270 (582)
T ss_dssp             TTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSS
T ss_pred             CCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcc
Confidence            99999887654211000                                         12456666667776653     


Q ss_pred             ---------------C----CeEEEEEccCCceeEEEEcCC----------cceEEEEe-CCCC---EEEEE-eCCcEEE
Q 019326          151 ---------------D----DCLAMVNLVRGRRSFYHKIGK----------EASLIKFD-GSGE---KFFMV-TEEKVGI  196 (343)
Q Consensus       151 ---------------d----~~i~~wd~~~~~~~~~~~~~~----------~~~~~~~~-~~~~---~~~~~-~~~~i~~  196 (343)
                                     |    +.|..+|.++++.........          ....+... .+++   .++.+ .++.+.+
T Consensus       271 ~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~  350 (582)
T 1flg_A          271 NTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV  350 (582)
T ss_dssp             CGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred             cCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence                           2    689999999999888776531          11222222 4664   55666 8899999


Q ss_pred             EEcccceeEEEecCCc--------------ce--------------------------------EEeeecC-CCeEEEEe
Q 019326          197 HQAEDAKLLCELDGKK--------------RI--------------------------------LCAAPGE-NGVLFTGG  229 (343)
Q Consensus       197 ~d~~~~~~~~~~~~~~--------------~i--------------------------------~~~~~~~-~~~l~~~~  229 (343)
                      +|..+++.+..+....              ++                                ..+++++ .+++++..
T Consensus       351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~  430 (582)
T 1flg_A          351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA  430 (582)
T ss_dssp             EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred             EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence            9999999887665221              00                                0122222 12343322


Q ss_pred             ---------------------------------CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          230 ---------------------------------EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       230 ---------------------------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                                                       .+|.|..||+.+++.+.+.. . ..++..-.....+.         +
T Consensus       431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-~-~~~~~~g~~~tagg---------l  499 (582)
T 1flg_A          431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-E-HLPLWAGVLATAGN---------L  499 (582)
T ss_dssp             ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-E-SSCCCSCCEEETTT---------E
T ss_pred             hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEec-C-CCCCcccceEeCCC---------E
Confidence                                             36889999999999988877 2 22322222222333         7


Q ss_pred             EEEEcCCCcEEEEeccCcc
Q 019326          277 VASASSDGVICVWDVRMAI  295 (343)
Q Consensus       277 l~s~~~dg~i~vwd~~~~~  295 (343)
                      ++.++.||.++.||.++++
T Consensus       500 vf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          500 VFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEECTTSEEEEEETTTCC
T ss_pred             EEEECCCCcEEEEECCCCC
Confidence            8889999999999999986

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.32  E-value=3.2e-09  Score=96.56  Aligned_cols=235  Identities=14%  Similarity=0.160  Sum_probs=155.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEeeC------CCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGGT------DDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~~------dg~i~iwd~~~~~~   74 (343)
                      +|++++.|+.|..+|..+       ++..-...... ......+.+ ....+..++.+..      +|.|..+|..+|+.
T Consensus       119 ~v~v~~~dg~l~alD~~t-------G~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKT-------GKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             EEEEEcCCCEEEEEECCC-------CCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            477888999999999887       33222111100 000011111 1122555666543      58999999999999


Q ss_pred             eeEeccCC--CC----------------------------CeEEEEEeCCCCCCCCceEEEeeCCC--------------
Q 019326           75 LGAIHHHE--SS----------------------------SVTSLAFYTPQNLSVPRNLFSTSADG--------------  110 (343)
Q Consensus        75 ~~~~~~~~--~~----------------------------~v~~l~~~~~~~~~~~~~l~s~~~dg--------------  110 (343)
                      +..+....  ..                            ....+++.+..     .+++.++.++              
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-----~~vy~~~~~g~~w~~~~~~~~~gd  265 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-----DLLYVGTGNGSPWNREVRSPGGGD  265 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-----TEEEEECCCEESSCHHHHSTTCCC
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-----CEEEEeCCCCCccccCCCCCCCCC
Confidence            98875310  00                            11236777776     5777777766              


Q ss_pred             -----eEEEEECCCcceeeeeeec--c-------ccEEEEEEecCCC---EEEEEeCCCeEEEEEccCCceeEEEEcCCc
Q 019326          111 -----FVSIFDADPFVLLTSVKVH--K-------KGVNDLAVHHSGK---LALTVGRDDCLAMVNLVRGRRSFYHKIGKE  173 (343)
Q Consensus       111 -----~i~iwd~~~~~~~~~~~~~--~-------~~v~~i~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  173 (343)
                           .|..+|.++++.+..++..  .       .+.....+..+++   .++.++.+|.++++|.++|+.+........
T Consensus       266 ~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~  345 (668)
T 1kv9_A          266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKV  345 (668)
T ss_dssp             CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred             ceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccc
Confidence                 4999999999999888742  1       2233333334664   688999999999999999998744332210


Q ss_pred             -------------------------------------ceEEEEeCCCCEEEEE---------------------------
Q 019326          174 -------------------------------------ASLIKFDGSGEKFFMV---------------------------  189 (343)
Q Consensus       174 -------------------------------------~~~~~~~~~~~~~~~~---------------------------  189 (343)
                                                           -..++++|+...+++.                           
T Consensus       346 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~  425 (668)
T 1kv9_A          346 TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF  425 (668)
T ss_dssp             CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred             ccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccc
Confidence                                                 0126778877766652                           


Q ss_pred             ----------eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          190 ----------TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       190 ----------~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                                .++.|..||+.+++.+.+.....+.....+. .+++++.++.||.++.||.++++.+..+.
T Consensus       426 ~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          426 ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence                      1267999999999998887754443322222 67889999999999999999999999887

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=6e-10  Score=93.12  Aligned_cols=227  Identities=8%  Similarity=0.009  Sum_probs=146.1

Q ss_pred             eEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeeeeEe
Q 019326           11 FIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus        11 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~~~~   78 (343)
                      .|.++|..+            .+.+.++..-..+  .++++  +.+++++.          .++.|.+||+.+++.+..+
T Consensus        47 ~vsvID~~t------------~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I  112 (368)
T 1mda_H           47 ENWVSCAGC------------GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             EEEEEETTT------------TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             eEEEEECCC------------CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            788888876            3444444443455  68888  77888775          3788999999999999988


Q ss_pred             ccCC------CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEE--EECCCcceeeeeee---------c---------c
Q 019326           79 HHHE------SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSI--FDADPFVLLTSVKV---------H---------K  130 (343)
Q Consensus        79 ~~~~------~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~---------~---------~  130 (343)
                      ....      ......++++|++     ++++++..  +..|.+  +|..+   +.++..         +         .
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDG-----k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASS-----ACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTS-----SCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCT
T ss_pred             ECCCccccccCCCcceEEEcCCC-----CEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCC
Confidence            5320      0235679999999     78887764  467888  88865   222211         0         0


Q ss_pred             ccEEEEEE--------------------------ecCCCEEEEEeCCCeEEEEEccCCceeE--EEEc-----------C
Q 019326          131 KGVNDLAV--------------------------HHSGKLALTVGRDDCLAMVNLVRGRRSF--YHKI-----------G  171 (343)
Q Consensus       131 ~~v~~i~~--------------------------~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~-----------~  171 (343)
                      +.+..+..                          .+++..++..+. +.+.+.|........  ....           +
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             CCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            00000110                          222233333333 566666665432111  1111           1


Q ss_pred             CcceEEEEeCCCCEEEEE-e-C--------CcEEEEEcccceeEEEecCCcceEEeeecC-CC-eEEEEe-CCCcEEEEE
Q 019326          172 KEASLIKFDGSGEKFFMV-T-E--------EKVGIHQAEDAKLLCELDGKKRILCAAPGE-NG-VLFTGG-EDRSITAWD  238 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~-~--------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~-~dg~i~i~d  238 (343)
                      .....+.++|+++.++++ . .        +.+.++|+.+.+.+..+........+.+++ ++ ++++.. .++.|.++|
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            112227899999998876 4 3        367799999999999888666788899984 44 566666 599999999


Q ss_pred             CCCCceeEEecccccccEEEEEEE
Q 019326          239 TNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      +.+++.+.++. .. .....+++.
T Consensus       344 ~~t~kvv~~I~-vg-~~P~~i~~~  365 (368)
T 1mda_H          344 AASDQDQSSVE-LD-KGPESLSVQ  365 (368)
T ss_dssp             SSSCEEEEECC-CC-SCCCEEECC
T ss_pred             CCCCcEEEEEE-CC-CCCCEEEee
Confidence            99999999987 33 334555554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.27  E-value=3.7e-09  Score=94.28  Aligned_cols=248  Identities=12%  Similarity=0.125  Sum_probs=154.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCC--CeE-EEEecCc------eEEEee------CCCeEEE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLS--PIT-TVAVSGT------AAASGG------TDDTIHL   66 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~-~l~~~~~------~l~s~~------~dg~i~i   66 (343)
                      +|++++.|+.|..+|..+       ++..-....   ..+..  .+. .-...+.      .+++++      .+|.|..
T Consensus       119 ~v~~~t~dg~l~AlD~~T-------G~~~W~~~~---~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~a  188 (582)
T 1flg_A          119 KVFFGTLDASVVALNKNT-------GKVVWKKKF---ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFA  188 (582)
T ss_dssp             EEEEEETTTEEEEEESSS-------CCEEEEEEC---SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEE
T ss_pred             EEEEEeCCCEEEEEECCC-------CCEEeeecC---CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEE
Confidence            467888899999999887       333221111   11110  111 0111222      666665      3789999


Q ss_pred             EEcCCCeeeeEeccCCCCCe-----------------------------------------EEEEEeCCCCCCCCceEEE
Q 019326           67 YDLSTSSSLGAIHHHESSSV-----------------------------------------TSLAFYTPQNLSVPRNLFS  105 (343)
Q Consensus        67 wd~~~~~~~~~~~~~~~~~v-----------------------------------------~~l~~~~~~~~~~~~~l~s  105 (343)
                      +|..+|+.+...... ...+                                         ..+++.|..     .+++.
T Consensus       189 lD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-----g~vyv  262 (582)
T 1flg_A          189 RDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-----NTIIV  262 (582)
T ss_dssp             ECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-----TEEEE
T ss_pred             EECCCCCEEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-----CEEEE
Confidence            999999988876432 1111                                         123445554     45555


Q ss_pred             eeC--------------------C----CeEEEEECCCcceeeeeee--cc--------ccEEEEEEe-cCC---CEEEE
Q 019326          106 TSA--------------------D----GFVSIFDADPFVLLTSVKV--HK--------KGVNDLAVH-HSG---KLALT  147 (343)
Q Consensus       106 ~~~--------------------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~i~~~-~~~---~~l~~  147 (343)
                      +..                    |    +.|..+|.++++.+..++.  |.        .++. +... .+|   ..++.
T Consensus       263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~  341 (582)
T 1flg_A          263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAH  341 (582)
T ss_dssp             EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEE
T ss_pred             eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEE
Confidence            542                    2    6899999999999988763  21        1222 2222 456   37888


Q ss_pred             EeCCCeEEEEEccCCceeEEEEcCCcc----------------------------------------------eEEEEeC
Q 019326          148 VGRDDCLAMVNLVRGRRSFYHKIGKEA----------------------------------------------SLIKFDG  181 (343)
Q Consensus       148 ~~~d~~i~~wd~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~  181 (343)
                      ++.+|.++++|.++++.+........+                                              ..++++|
T Consensus       342 ~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  421 (582)
T 1flg_A          342 ADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQ  421 (582)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECT
T ss_pred             ECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECC
Confidence            999999999999999987665543210                                              1245666


Q ss_pred             CCCEEEEE-e---------------------------------CCcEEEEEcccceeEEEecCCcceEEeee-cCCCeEE
Q 019326          182 SGEKFFMV-T---------------------------------EEKVGIHQAEDAKLLCELDGKKRILCAAP-GENGVLF  226 (343)
Q Consensus       182 ~~~~~~~~-~---------------------------------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~-~~~~~l~  226 (343)
                      +...+++. .                                 .+.+..||+.+++.+.+.....+...-.. ..+++++
T Consensus       422 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf  501 (582)
T 1flg_A          422 DTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVF  501 (582)
T ss_dssp             TTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEE
T ss_pred             CCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEE
Confidence            65555543 2                                 46788999999999888774433322111 1577888


Q ss_pred             EEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      .|+.||.++.||.++|+.+.++..+....-.-+.+..++.
T Consensus       502 ~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          502 TGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            8999999999999999999998832221112245545543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=7.8e-10  Score=92.46  Aligned_cols=228  Identities=9%  Similarity=-0.045  Sum_probs=145.7

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeeee-------eeccccEEEEEEecCCCEEEEEeC----
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSV-------KVHKKGVNDLAVHHSGKLALTVGR----  150 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~~~~~----  150 (343)
                      ..+..+++++++     +.+++...  ++.++||.+.+++.. .+       ..+...+..++++++++++++-..    
T Consensus        17 ~~p~~va~~~~g-----~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDG-----RLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTS-----CEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred             CCcceEEECCCC-----CEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence            578899999998     67777542  342455554444422 22       124467999999999876665433    


Q ss_pred             -CCeEEEEEccCCceeEEEEcC-------CcceEEEEeCCCCEEEEE-e----CCcEEEEEcccceeEEEecCC------
Q 019326          151 -DDCLAMVNLVRGRRSFYHKIG-------KEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAKLLCELDGK------  211 (343)
Q Consensus       151 -d~~i~~wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~~~~~~~~------  211 (343)
                       ++.|.+||+.+++.+.....+       ..+..+++++++..++++ .    ++.|.+||+.+++..+.+..+      
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence             578999999998866666553       235789999876666555 3    578999999888766654320      


Q ss_pred             ------------------------cceEEeeecC-CCeEEEEeCCC-cEEEEECC---CCc-----eeE--Eeccccccc
Q 019326          212 ------------------------KRILCAAPGE-NGVLFTGGEDR-SITAWDTN---SGK-----VAY--CIEDAHSAR  255 (343)
Q Consensus       212 ------------------------~~i~~~~~~~-~~~l~~~~~dg-~i~i~d~~---~~~-----~~~--~~~~~h~~~  255 (343)
                                              ..+..+++++ ++.|+.+..++ .+..++..   .+.     ...  ... ++...
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~  249 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPI  249 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCS
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCC
Confidence                                    1246788874 45677666555 55555432   111     000  111 23345


Q ss_pred             EEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       256 v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                      ...+++.+++.         ++++...++.|.+||..++..   ..+........+.++++.+++.+.+.....+
T Consensus       250 pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~---~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          250 CDGISIDKDHN---------IYVGDLAHSAIGVITSADRAY---KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEE---EEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             CceEEECCCCC---------EEEEccCCCeEEEEECCCCCE---EEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            56788877765         888888999999999844421   1122222234588999999988877766544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.27  E-value=7.6e-10  Score=96.43  Aligned_cols=259  Identities=12%  Similarity=0.070  Sum_probs=174.5

Q ss_pred             EEEeeCCCeEEEEEcCCCeeeeEecc---------------------------------C-----CCCCeEEEEEeC---
Q 019326           55 AASGGTDDTIHLYDLSTSSSLGAIHH---------------------------------H-----ESSSVTSLAFYT---   93 (343)
Q Consensus        55 l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------------~-----~~~~v~~l~~~~---   93 (343)
                      |.||+..|.++|+-+.+++.+..+.-                                 +     ..+.......+.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            78899999999998887776654410                                 0     012222344444   


Q ss_pred             --CCCCCCCceEEEeeC-CCeEEEEECCCcceeeeeeec-cccEEEEEE-e-cCCCEEEEEeC-----------------
Q 019326           94 --PQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTSVKVH-KKGVNDLAV-H-HSGKLALTVGR-----------------  150 (343)
Q Consensus        94 --~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~~~~~l~~~~~-----------------  150 (343)
                        ++     ++++.... ++.|.+.|++++++...+... ......+++ . |+++++++++.                 
T Consensus        98 ~~DG-----~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           98 KYDG-----RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEE-----EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             CcCC-----CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence              45     56665554 567999999999988866432 245778887 5 89999988852                 


Q ss_pred             -CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEe-CC------------------------------------
Q 019326          151 -DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVT-EE------------------------------------  192 (343)
Q Consensus       151 -d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------------------  192 (343)
                       ++.+.++|..+.+.......+.....++++|++++++++. +.                                    
T Consensus       173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             cCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence             4679999999999888888877788899999999998883 21                                    


Q ss_pred             --cEEEEEccc--cee-EEEecCCcceEEeeecC-CCeEE-EEeCCCcEEEEECCCCc------------eeEEeccccc
Q 019326          193 --KVGIHQAED--AKL-LCELDGKKRILCAAPGE-NGVLF-TGGEDRSITAWDTNSGK------------VAYCIEDAHS  253 (343)
Q Consensus       193 --~i~~~d~~~--~~~-~~~~~~~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~~~~------------~~~~~~~~h~  253 (343)
                        .+.+.|.++  ++. +..++-.....++.+++ +++++ ++..+.+|.++|+.+.+            ...++.  -.
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG  330 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LG  330 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CC
T ss_pred             ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CC
Confidence              256666665  333 44554444555677774 55554 45568999999998653            334444  45


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc-----cCCCcccccccccce------eEEEcCCCCce
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK-----EKPLPLAEAKTNSRL------TCLAGSSTKSF  322 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~i------~~~~~s~~~~~  322 (343)
                      .....++|++++.         ..++.-.|+.|.+||+.+...     .....+.....+...      ..+..++||++
T Consensus       331 ~gP~h~aF~~dG~---------aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          331 LGPLHTAFDGRGN---------AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             SCEEEEEECTTSE---------EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             CCcceEEECCCCe---------EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            6678999998874         777888999999999987310     001122222222222      23456899999


Q ss_pred             eccccCC
Q 019326          323 KRPQIGD  329 (343)
Q Consensus       323 ~~~~~~~  329 (343)
                      +++...-
T Consensus       402 l~~~Nk~  408 (595)
T 1fwx_A          402 LVCLSKF  408 (595)
T ss_dssp             EEEEESC
T ss_pred             EEEcCCC
Confidence            8765543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.26  E-value=8.9e-09  Score=86.78  Aligned_cols=214  Identities=13%  Similarity=0.086  Sum_probs=143.1

Q ss_pred             ceEEEeeCCCeEEEEECCCc----ceeeeee-------eccccEEEEEEecCCCEEEEEeCC------CeEEEEEccCCc
Q 019326          101 RNLFSTSADGFVSIFDADPF----VLLTSVK-------VHKKGVNDLAVHHSGKLALTVGRD------DCLAMVNLVRGR  163 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~d------~~i~~wd~~~~~  163 (343)
                      .+++.+..++.|+++|+.+.    +.+.+++       ........+.+.|+| .++++..+      |.|.++|.++.+
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            45666777899999999654    5555552       011245667889999 77766655      789999999999


Q ss_pred             eeEEEEcCCc----ceEEEEeCCCCEEEEEe--------------------CCcEEEEEcccceeEEEecCC---cceEE
Q 019326          164 RSFYHKIGKE----ASLIKFDGSGEKFFMVT--------------------EEKVGIHQAEDAKLLCELDGK---KRILC  216 (343)
Q Consensus       164 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------------------~~~i~~~d~~~~~~~~~~~~~---~~i~~  216 (343)
                      .+.....+..    ...+.|+|+++.++++.                    .+.|.+||+.+++.+.++...   .....
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~  255 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE  255 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence            8877765422    33477899999888884                    789999999999888888743   33445


Q ss_pred             eee--cC-CCeEEEEe------CCCcEEEEECCCCc--eeEE--ecccc----------------cccEEEEEEEecCCC
Q 019326          217 AAP--GE-NGVLFTGG------EDRSITAWDTNSGK--VAYC--IEDAH----------------SARVKGIVVLTKNDG  267 (343)
Q Consensus       217 ~~~--~~-~~~l~~~~------~dg~i~i~d~~~~~--~~~~--~~~~h----------------~~~v~~~~~~~~~~~  267 (343)
                      +.|  ++ ++++++++      .+++|.+|....++  ..+.  +. ..                ......|.++++++ 
T Consensus       256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~-~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr-  333 (462)
T 2ece_A          256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP-AEPLEGNLPEILKPFKAVPPLVTDIDISLDDK-  333 (462)
T ss_dssp             EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC-CEECCSSCCGGGGGGTEECCCCCCEEECTTSC-
T ss_pred             eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC-CccccccccccccccccCCCceeEEEECCCCC-
Confidence            545  53 55665555      56788877665442  1111  11 10                13467788888776 


Q ss_pred             CCCCCCCeEEEEEc-CCCcEEEEeccCccccCCCccccccccc---------------ceeEEEcCCCCceecccc
Q 019326          268 GSTAENPYLVASAS-SDGVICVWDVRMAIKEKPLPLAEAKTNS---------------RLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       268 ~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~i~~~~~s~~~~~~~~~~  327 (343)
                              +|..+. ..+.|.++|+....  .+..+.....++               ....+++++|++++.+..
T Consensus       334 --------fLYVSnrg~d~VavfdV~d~~--~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          334 --------FLYLSLWGIGEVRQYDISNPF--KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             --------EEEEEETTTTEEEEEECSSTT--SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             --------EEEEEeCCCCEEEEEEecCCC--CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                    666655 46899999997432  122222233221               257899999999887766

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.26  E-value=5.7e-09  Score=93.02  Aligned_cols=269  Identities=13%  Similarity=0.062  Sum_probs=163.3

Q ss_pred             eeEEecc-CCeEEEEEe-ecCCCCCCCCcceeeEEeE-EecCC-----CCCeEEEEe--cCce----EEEeeCCCeEEEE
Q 019326            2 SLIAGSY-EKFIWGYKL-KPSNHYSSDQKTLTLTQLF-SYPAH-----LSPITTVAV--SGTA----AASGGTDDTIHLY   67 (343)
Q Consensus         2 ~l~~g~~-d~~i~vw~~-~~~~~~~~~~~~~~~~~~~-~~~~h-----~~~v~~l~~--~~~~----l~s~~~dg~i~iw   67 (343)
                      +|++++. ++.|..+|. .+       ++..-..... .....     ......+++  .+..    ++.++.|+.|..+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~t-------G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~Al  136 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDP-------GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL  136 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCT-------TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCC-------CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEE
Confidence            3566776 788989998 66       3222111110 00000     000122455  4444    8888899999999


Q ss_pred             EcCCCeeeeEeccCCC----CCeEE-EEEeCCCCCCCCceEEEee------CCCeEEEEECCCcceeeeeeecccc----
Q 019326           68 DLSTSSSLGAIHHHES----SSVTS-LAFYTPQNLSVPRNLFSTS------ADGFVSIFDADPFVLLTSVKVHKKG----  132 (343)
Q Consensus        68 d~~~~~~~~~~~~~~~----~~v~~-l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~----  132 (343)
                      |..+|+.+...... .    ..+.+ -.+. ++      .+++++      .+|.|+.+|.++++.+..+......    
T Consensus       137 Da~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g------~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~  208 (599)
T 1w6s_A          137 NAETGETVWKVENS-DIKVGSTLTIAPYVV-KD------KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (599)
T ss_dssp             ETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TT------EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             ECCCCCEEEeecCC-CCCccceeecCCEEE-CC------EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence            99999998877543 1    01211 1111 33      555555      3899999999999998877642211    


Q ss_pred             ---------------------------------E-EEEEEecCCCEEEEEeCC----------------CeEEEEEccCC
Q 019326          133 ---------------------------------V-NDLAVHHSGKLALTVGRD----------------DCLAMVNLVRG  162 (343)
Q Consensus       133 ---------------------------------v-~~i~~~~~~~~l~~~~~d----------------~~i~~wd~~~~  162 (343)
                                                       + ..+++.+....++.+..+                +.|..+|.+++
T Consensus       209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG  288 (599)
T 1w6s_A          209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG  288 (599)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred             cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence                                             0 134566777777777665                38999999999


Q ss_pred             ceeEEEEcCCc----------ceEEEEe-CCC---CEEEEE-eCCcEEEEEcccceeEEEecCCc--------------c
Q 019326          163 RRSFYHKIGKE----------ASLIKFD-GSG---EKFFMV-TEEKVGIHQAEDAKLLCELDGKK--------------R  213 (343)
Q Consensus       163 ~~~~~~~~~~~----------~~~~~~~-~~~---~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------------~  213 (343)
                      +..........          ...+... .++   ..++.+ .++.+.++|..+++.+.......              +
T Consensus       289 ~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p  368 (599)
T 1w6s_A          289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP  368 (599)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred             ceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence            98877665421          1223332 567   355556 88999999999999887654110              1


Q ss_pred             e--------------------------EEeeecC-CCeEEEE---------------------------------e----
Q 019326          214 I--------------------------LCAAPGE-NGVLFTG---------------------------------G----  229 (343)
Q Consensus       214 i--------------------------~~~~~~~-~~~l~~~---------------------------------~----  229 (343)
                      +                          ..+++++ .+++++.                                 +    
T Consensus       369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~  448 (599)
T 1w6s_A          369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN  448 (599)
T ss_dssp             EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred             eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence            1                          0112221 1122211                                 1    


Q ss_pred             --CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          230 --EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       230 --~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                        ..|.|..||+.+++.+.+..  +..+..+-.+...+.         +++.++.||.|+.||.++++.
T Consensus       449 ~~~~G~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagg---------~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          449 YEGLGQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGD---------LVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             TBCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTT---------EEEEECTTSEEEEEETTTCCE
T ss_pred             CCCcCeEEEEECCCCCEEeEec--CCCCccCcceEecCC---------EEEEECCCCeEEEEECCCCCE
Confidence              35789999999999988876  222222111222333         788899999999999999863

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.26  E-value=6.5e-08  Score=90.19  Aligned_cols=263  Identities=11%  Similarity=0.121  Sum_probs=171.1

Q ss_pred             eEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec-cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce
Q 019326           45 ITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH-HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL  122 (343)
Q Consensus        45 v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  122 (343)
                      |.++... ...|..++.++-|..|+..+++...... .. ...|.++...+++      .|..|+.++-+..||..+++.
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g------~lwigt~~~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILG-TKQIQAILQQSPT------RIWVATEGAGLFLINPKTKEI  247 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETT------EEEEEEBSSCEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCC-CCeeEEEEEcCCC------CEEEEECCCCeEEEeCCCCeE
Confidence            8888887 5667777766558899987765443221 23 4678899888777      566777655588999877543


Q ss_pred             eeeeee-------ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc--------CCcceEEEEeCCCCEEE
Q 019326          123 LTSVKV-------HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI--------GKEASLIKFDGSGEKFF  187 (343)
Q Consensus       123 ~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  187 (343)
                      ......       ....|.++...++|.+.+ |+.+ .|.+||..+++.......        ...|.++..+++|...+
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            322111       135799999998886544 4555 588999877654333211        24578888899888777


Q ss_pred             EEeCCcEEEEEcccceeEEEec-------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecc-------ccc
Q 019326          188 MVTEEKVGIHQAEDAKLLCELD-------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIED-------AHS  253 (343)
Q Consensus       188 ~~~~~~i~~~d~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~h~  253 (343)
                      ...++.+..++..+........       ....|.++....++.|..|+.++-|..||..+++...-...       ...
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence            6677889999877654322111       23458888887677888899888899999887654322210       123


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecc
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      ..|.++...+++.         .|..|+.++-|..||..++................|.++...+++.+.+.
T Consensus       406 ~~v~~i~~d~~g~---------~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          406 NNIKAVYVDEKKS---------LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             SCEEEEEEETTTT---------EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred             ccEEEEEEcCCCC---------EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence            5688888776653         48888888889999988753211110000112346888888777765543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.26  E-value=9.8e-10  Score=100.69  Aligned_cols=193  Identities=9%  Similarity=0.047  Sum_probs=125.2

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEE-----eeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC-----
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFS-----TSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD-----  152 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-----  152 (343)
                      ...+..++|+|++     ++|+-     |+....|++||+.+++.+... .+......++|+ |++.|+.++.+.     
T Consensus       128 ~~~l~~~~~SpDg-----~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          128 TTALDQLSFSRDG-----RILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             CCEEEEEEECTTS-----SEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             cEEEEEEEECCCC-----CEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccc
Confidence            4578899999999     66663     233357999999998865431 111113568899 999998888774     


Q ss_pred             --------eEEEEEccCCce--eEEEEcC----CcceEEEEeCCCCEEEEE-e----CCcEEEEEcccce-eEEEec-CC
Q 019326          153 --------CLAMVNLVRGRR--SFYHKIG----KEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAK-LLCELD-GK  211 (343)
Q Consensus       153 --------~i~~wd~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~-~~~~~~-~~  211 (343)
                              .|++|++.++..  .......    .....+.++|++++++.. .    .+.+.++|+.++. ....+. +.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                    399999987653  2222222    235678999999988766 3    2478999987763 233333 43


Q ss_pred             cceEEeeecCCC-eEEEEeCC---CcEEEEECCCCce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC-CC
Q 019326          212 KRILCAAPGENG-VLFTGGED---RSITAWDTNSGKV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS-DG  284 (343)
Q Consensus       212 ~~i~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-dg  284 (343)
                      .........+++ +++....+   +.|..+|+.++..  ...+. .|...+.  .|++++.         .|+.... ++
T Consensus       281 ~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~---------~lv~~~~~~g  348 (693)
T 3iuj_A          281 DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSG---------YLFAEYMVDA  348 (693)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETT---------EEEEEEEETT
T ss_pred             CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECC---------EEEEEEEECC
Confidence            333333223444 44444443   6799999987754  34555 4655554  7888876         6665544 44


Q ss_pred             --cEEEEeccCc
Q 019326          285 --VICVWDVRMA  294 (343)
Q Consensus       285 --~i~vwd~~~~  294 (343)
                        .|++|++..+
T Consensus       349 ~~~l~~~d~~g~  360 (693)
T 3iuj_A          349 TARVEQFDYEGK  360 (693)
T ss_dssp             EEEEEEECTTSC
T ss_pred             eeEEEEEECCCC
Confidence              6889998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.26  E-value=1.7e-08  Score=79.83  Aligned_cols=204  Identities=12%  Similarity=0.059  Sum_probs=144.9

Q ss_pred             ceeeEEeEEecCCCC--CeEEEEecC-ceEEEeeC---CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCce
Q 019326           29 TLTLTQLFSYPAHLS--PITTVAVSG-TAAASGGT---DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        29 ~~~~~~~~~~~~h~~--~v~~l~~~~-~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~  102 (343)
                      ....+.+.+++ |..  ....++|++ ..|+.++.   ++.|+++|+.+++.+..+..........+++..+      ..
T Consensus         6 ~~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~------~l   78 (266)
T 2iwa_A            6 VYIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE------KL   78 (266)
T ss_dssp             EEEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT------EE
T ss_pred             ccCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC------EE
Confidence            34556666664 553  368999983 56665542   5899999999999998876431233345666532      35


Q ss_pred             EEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCC------cceE
Q 019326          103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGK------EASL  176 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~  176 (343)
                      .++.-.++.+.++|..+++.+.++......  ...++++++.++++..++.|.++|..+.+.........      .+..
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            556666899999999999999888643111  23355677777777778999999999988777666542      3567


Q ss_pred             EEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCC--------------cceEEeeecC-C-CeEEEEeCCCcEEEEEC
Q 019326          177 IKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGK--------------KRILCAAPGE-N-GVLFTGGEDRSITAWDT  239 (343)
Q Consensus       177 ~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~--------------~~i~~~~~~~-~-~~l~~~~~dg~i~i~d~  239 (343)
                      +.+. ++..++.. .++.|.+.|..+++.+..+...              .....+++++ + .+++++...+.++..++
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            7887 66555555 6889999999999999888732              2457899984 3 46777778889998887


Q ss_pred             CCC
Q 019326          240 NSG  242 (343)
Q Consensus       240 ~~~  242 (343)
                      ...
T Consensus       236 ~~~  238 (266)
T 2iwa_A          236 HLV  238 (266)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.26  E-value=5.8e-09  Score=81.56  Aligned_cols=184  Identities=13%  Similarity=0.036  Sum_probs=133.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEEeCC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~d  151 (343)
                      +.+.++......-...|.|+. +     .++++.+.+|.|+++|+++++.+..+ .... .-..+++..+ +..+..-.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~-----~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~  115 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-G-----HFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTE  115 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T-----EEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSS
T ss_pred             EEEEEEcCCCccccceEEEEC-C-----EEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccC
Confidence            344555322134457889884 4     58888889999999999999988887 3332 1233555432 444455568


Q ss_pred             CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC---Cc---ceEEeeecCCCe
Q 019326          152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG---KK---RILCAAPGENGV  224 (343)
Q Consensus       152 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~---~~---~i~~~~~~~~~~  224 (343)
                      +.+.+||..+.+.+..+........++  +++..++.+ .++.|.++|..+.+.+..+.-   ..   .++.+.+.++.+
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~l  193 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVI  193 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred             CEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEE
Confidence            999999999999988888765544444  567888888 789999999999999888762   22   356677766655


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeccc------------ccccEEEEEEEecCC
Q 019326          225 LFTGGEDRSITAWDTNSGKVAYCIEDA------------HSARVKGIVVLTKND  266 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~  266 (343)
                      .+....+..|.+.|..+++.+..+...            -....++|++.|..+
T Consensus       194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence            555556889999999999999888722            113678999998765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=1.3e-08  Score=85.82  Aligned_cols=214  Identities=11%  Similarity=0.058  Sum_probs=138.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEec-------CCCCCeEEEEec-CceEEEeeCC------CeEEEEE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYP-------AHLSPITTVAVS-GTAAASGGTD------DTIHLYD   68 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~-~~~l~s~~~d------g~i~iwd   68 (343)
                      ++.|..++.|+++|+.+...        +.+....+.       .-...-..+... ...++++..+      |.|.+.|
T Consensus        99 ~v~~l~s~~I~viD~~t~p~--------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           99 IVPGLRSSRIYIIDTKPNPR--------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             EEEBTTTCCEEEEECCSCTT--------SCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred             EEccCCCCeEEEEECCCCCC--------CceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence            56677889999999875211        112222221       001122333444 2255555444      7899999


Q ss_pred             cCCCeeeeEeccC--CCCCeEEEEEeCCCCCCCCceEEEee-------------------CCCeEEEEECCCcceeeeee
Q 019326           69 LSTSSSLGAIHHH--ESSSVTSLAFYTPQNLSVPRNLFSTS-------------------ADGFVSIFDADPFVLLTSVK  127 (343)
Q Consensus        69 ~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~  127 (343)
                      .++.+.+..+...  ...--..+.|+|++     +.+++..                   .+.+|.+||+.+++.+.++.
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPN-----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTT-----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCC-----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            9999999888633  01223458889998     6777774                   36899999999988888877


Q ss_pred             ec-c-ccEEEEEE--ecCCCEEEEEe------CCCeEEEEEccCCceeEEEE--c-------------------CCcceE
Q 019326          128 VH-K-KGVNDLAV--HHSGKLALTVG------RDDCLAMVNLVRGRRSFYHK--I-------------------GKEASL  176 (343)
Q Consensus       128 ~~-~-~~v~~i~~--~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~--~-------------------~~~~~~  176 (343)
                      .. . .....+.|  +|+++++++++      .+++|.+|....++......  .                   ...+..
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            53 1 24455655  99998888776      46788877765543211110  0                   234677


Q ss_pred             EEEeCCCCEEEEE--eCCcEEEEEccc---ceeEEEecCCc---------------ceEEeeec-CCCeEEEEe
Q 019326          177 IKFDGSGEKFFMV--TEEKVGIHQAED---AKLLCELDGKK---------------RILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       177 ~~~~~~~~~~~~~--~~~~i~~~d~~~---~~~~~~~~~~~---------------~i~~~~~~-~~~~l~~~~  229 (343)
                      +.+++++++|+++  ..+.|.+||+..   .+.+..+...+               ....+.++ ++++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999999999999  788999999863   35555554321               24667777 566777766

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.23  E-value=4e-09  Score=82.46  Aligned_cols=191  Identities=10%  Similarity=0.042  Sum_probs=133.9

Q ss_pred             ceeeeeeeccc--cEEEEEEecCCCEEEEEeCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcE
Q 019326          121 VLLTSVKVHKK--GVNDLAVHHSGKLALTVGRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKV  194 (343)
Q Consensus       121 ~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i  194 (343)
                      +.+.++. |..  ....+.|+ ++.++.+.+.+|  .|+.+|+++++.......+.......+.+.+..++..  .++.+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            3455553 544  35788898 677777777766  8999999999999888887766554444455666666  69999


Q ss_pred             EEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc-cc---ccEEEEEEEecCCCCCC
Q 019326          195 GIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA-HS---ARVKGIVVLTKNDGGST  270 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-h~---~~v~~~~~~~~~~~~~~  270 (343)
                      .+||..+.+.+.+++....-..+++ +++.|+.+..++.|.++|..+.+.+.++.-. ..   ..++.+.+. ++.    
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~----  183 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE----  183 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE----
T ss_pred             EEEECccCcEEEEEECCCCceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE----
Confidence            9999999999999985544345555 5666766666888999999999988887722 12   334567765 443    


Q ss_pred             CCCCeEEEEEcCCCcEEEEeccCccccCCCccccc--------ccccceeEEEcCCCCceec
Q 019326          271 AENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA--------KTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~~~  324 (343)
                           ..+..-.++.|.+.|.++++....+.+...        ......+.+|++|++..+.
T Consensus       184 -----lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          184 -----IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             -----EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             -----EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence                 555555688999999999864444433221        1223578999999765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.23  E-value=8.3e-08  Score=77.07  Aligned_cols=246  Identities=11%  Similarity=0.062  Sum_probs=147.7

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeee-----eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSL-----GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK  127 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  127 (343)
                      .+|+.+.. +.|+.++++.....     ..+... ...+..+++.+.+.    .++++-..++.|..++.........+.
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~-~~~~~gi~~d~~~~----~ly~~d~~~~~I~~~~~~g~~~~~~~~   75 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGEPTTIIR   75 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCCCEEEEC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCC-CCcEEEEEEecCCC----EEEEEECCCCEEEEEecCCCCcEEEEE
Confidence            44555553 47888888765321     122222 24578999998651    455555567899999997654433332


Q ss_pred             eccccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-e---CCcEEEEEccc
Q 019326          128 VHKKGVNDLAVHHSGKLA-LTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-T---EEKVGIHQAED  201 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~---~~~i~~~d~~~  201 (343)
                      ........+++++++..| ++-...+.|.++++............ ..+..++++|++..++.+ .   .+.|..+++..
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            222467899999975544 45555789999998754432222222 467889999977766666 2   36788888754


Q ss_pred             ceeEEEec--CCcceEEeeecC-CCeE-EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE
Q 019326          202 AKLLCELD--GKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV  277 (343)
Q Consensus       202 ~~~~~~~~--~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  277 (343)
                      .. ...+.  .......+++++ ++.| ++-...+.|.++|.........+. . .....+++.. .+.         ++
T Consensus       156 ~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~-~~~P~gi~~d-~~~---------ly  222 (267)
T 1npe_A          156 TN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-G-LQYPFAVTSY-GKN---------LY  222 (267)
T ss_dssp             CC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-C-CCSEEEEEEE-TTE---------EE
T ss_pred             CC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-C-CCCceEEEEe-CCE---------EE
Confidence            32 22222  234567888874 4555 455567899999997544333333 2 2334566654 222         55


Q ss_pred             EEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCC
Q 019326          278 ASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTK  320 (343)
Q Consensus       278 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  320 (343)
                      ++....+.|.++|..+++.....+..   .......+++.|++
T Consensus       223 va~~~~~~v~~~d~~~g~~~~~i~~g---~~~~p~gi~~~~~~  262 (267)
T 1npe_A          223 YTDWKTNSVIAMDLAISKEMDTFHPH---KQTRLYGITIALSQ  262 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECCS---SCCCCCCEEEECSC
T ss_pred             EEECCCCeEEEEeCCCCCceEEEccc---cccccceeeecCcc
Confidence            55556789999999877533322211   11135667777665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.23  E-value=1e-08  Score=80.17  Aligned_cols=184  Identities=11%  Similarity=0.033  Sum_probs=130.6

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECCCcceeeeeeecccc-EEEEEEecCCCEEEE-E
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDADPFVLLTSVKVHKKG-VNDLAVHHSGKLALT-V  148 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~-~  148 (343)
                      +.+.++......-...|.|+ ++     .++.+.+.+|  .|+++|+++++.+..+...... -..+++.  ++.|.. .
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~-----~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~lt  103 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NG-----YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLT  103 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TT-----EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred             EEEEEecCCCCcccceEEEE-CC-----EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEE
Confidence            34455532213445788998 55     5777777776  8999999999998888754322 1234444  444444 4


Q ss_pred             eCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC---Ccc---eEEeeecC
Q 019326          149 GRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG---KKR---ILCAAPGE  221 (343)
Q Consensus       149 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~---~~~---i~~~~~~~  221 (343)
                      -.++.+.+||..+.+.+..+..+.....++  +++..++.+ ..+.|.++|..+.+.+..+.-   ..+   ++.+.+.+
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~  181 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD  181 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET
T ss_pred             eeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC
Confidence            458999999999999988888765444444  567878777 678899999999998888762   223   45577766


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeEEeccc-----------ccccEEEEEEEecCC
Q 019326          222 NGVLFTGGEDRSITAWDTNSGKVAYCIEDA-----------HSARVKGIVVLTKND  266 (343)
Q Consensus       222 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~  266 (343)
                      +.+.+..-.++.|.+.|..+++.+..+...           -....++|+++|+.+
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            655555556889999999999999888721           013568999999876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.22  E-value=5.5e-08  Score=75.41  Aligned_cols=185  Identities=14%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECCCcceeeeeeecccc-EEEEEEecCCCEEEEEe
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDADPFVLLTSVKVHKKG-VNDLAVHHSGKLALTVG  149 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~  149 (343)
                      +.+.++......-...|.|++ +     .++.+.+.+|  .|+.+|+.+++.+..+...... -..+++.. ++.....-
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~-----~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw   82 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-G-----HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTW   82 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T-----EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEES
T ss_pred             EEEEEcCCCCccccccEEEEC-C-----EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEe
Confidence            345555322245677899987 4     4677777754  8999999999998888644331 13344442 34444555


Q ss_pred             CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC---C---cceEEeeecCC
Q 019326          150 RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG---K---KRILCAAPGEN  222 (343)
Q Consensus       150 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~---~---~~i~~~~~~~~  222 (343)
                      .++.+.+||..+.+.+..+..+.....++  +++..++++ .++.|.++|..+.+.+..+.-   .   ..++.+.+.++
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G  160 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNG  160 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred             eCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCC
Confidence            68999999999999988888776555454  567888888 888999999999999888772   2   34566777666


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeEEeccc------------ccccEEEEEEEecCC
Q 019326          223 GVLFTGGEDRSITAWDTNSGKVAYCIEDA------------HSARVKGIVVLTKND  266 (343)
Q Consensus       223 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~  266 (343)
                      ...+....+..|.+.|..+++.+..+..+            -....++|++.|...
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence            65555556889999999999998887622            123668999999766

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.21  E-value=1.8e-07  Score=87.27  Aligned_cols=263  Identities=10%  Similarity=0.100  Sum_probs=171.4

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec-----cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH-----HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      ...|.++..+ ...|..|+.++-|..|+..+........     .-....|.++...+++      .|..|+.++-|..|
T Consensus       309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g------~lWiGt~~~Gl~~~  382 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK------NLWIGTNDGGLNLY  382 (795)
T ss_dssp             SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS------CEEEEESSSCEEEE
T ss_pred             CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC------CEEEEECCCCeEEE
Confidence            4679999998 6678888887779999877554322111     1013569999988877      67888888889999


Q ss_pred             ECCCcceeeeee--------eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-----cCCcceEEEEeCC
Q 019326          116 DADPFVLLTSVK--------VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-----IGKEASLIKFDGS  182 (343)
Q Consensus       116 d~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~  182 (343)
                      +..+++......        .....|.+++..++++.|..|+.++.|..+|..+++......     ....+.++...++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  462 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE  462 (795)
T ss_dssp             CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred             cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence            987754332211        123578999998888757778887889999998876443321     1245778888888


Q ss_pred             CCEEEEEeCCcEEEEEcccceeEEEec-------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec------
Q 019326          183 GEKFFMVTEEKVGIHQAEDAKLLCELD-------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE------  249 (343)
Q Consensus       183 ~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  249 (343)
                      +...+... +.+.+|+..+++......       ....|.++.....+.+..|+. +-|..||..+++.  .+.      
T Consensus       463 g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~  538 (795)
T 4a2l_A          463 GNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVS  538 (795)
T ss_dssp             SCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSC
T ss_pred             CCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCC
Confidence            87666655 678899988765433221       235688888876667777777 5688999877654  332      


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccc
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                      ......|.++...+++.         +. .++.. -|..||..+..... ......-....|.++...+++.+-+..
T Consensus       539 ~l~~~~i~~i~~d~~g~---------lW-igT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          539 NVTKLFTNCIYEASNGI---------IW-VGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             GGGGSCEEEEEECTTSC---------EE-EEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCeeEEEEECCCCC---------EE-EEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc
Confidence            12345788888777664         44 44444 57888877653211 111111123357788887777665443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.16  E-value=4.5e-08  Score=75.89  Aligned_cols=190  Identities=12%  Similarity=0.042  Sum_probs=132.0

Q ss_pred             ceeeeeeeccc--cEEEEEEecCCCEEEEEeCC--CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcE
Q 019326          121 VLLTSVKVHKK--GVNDLAVHHSGKLALTVGRD--DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKV  194 (343)
Q Consensus       121 ~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i  194 (343)
                      +.+.++ .|..  ....+.|++ +.++.+.+.+  ..|+.+|+.+++.......+.......+.+.+..++..  .++.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            345555 3553  567889986 5666666665  48999999999999888887666544444445666555  79999


Q ss_pred             EEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc-cc---ccEEEEEEEecCCCCCC
Q 019326          195 GIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA-HS---ARVKGIVVLTKNDGGST  270 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-h~---~~v~~~~~~~~~~~~~~  270 (343)
                      .+||..+.+.+.+++....-..++. +++.|+.+..++.|.++|..+.+.+.++.-. +.   ..++.+.+. ++.    
T Consensus        88 ~v~D~~tl~~~~ti~~~~~Gwglt~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~----  161 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPGEGWALTS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE----  161 (243)
T ss_dssp             EEEETTTTEEEEEEECSSCCCEEEE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE----
T ss_pred             EEEECCcCcEEEEEeCCCCceEEee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE----
Confidence            9999999999999986555456665 5566666667899999999999988887722 22   244566654 332    


Q ss_pred             CCCCeEEEEEcCCCcEEEEeccCccccCCCccccc---------ccccceeEEEcCCCCcee
Q 019326          271 AENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA---------KTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       271 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~~  323 (343)
                           .++..-.+..|.+.|.++++......+...         ......+.+|+++++..+
T Consensus       162 -----lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          162 -----LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             -----EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             -----EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence                 555555678999999999864443333322         123457899999875543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.16  E-value=3.2e-07  Score=75.84  Aligned_cols=231  Identities=10%  Similarity=0.012  Sum_probs=146.0

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccC-------------------CCCCeEEEEEeC-CCCCCCC
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHH-------------------ESSSVTSLAFYT-PQNLSVP  100 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~v~~l~~~~-~~~~~~~  100 (343)
                      ....+++++  +++++++..++.|..|+..+++.. .+...                   ....+..+++.+ ++     
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-----   92 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-----   92 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-----
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-----
Confidence            445677887  666888888999999998765432 22110                   013578899997 55     


Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeee-----ccccEEEEEEec-CCCEEEEEeC-----------------CCeEEEE
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKV-----HKKGVNDLAVHH-SGKLALTVGR-----------------DDCLAMV  157 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~-~~~~l~~~~~-----------------d~~i~~w  157 (343)
                       .|+.+...+.|..+|..+++. ..+..     .......+++.+ +|+..++-..                 ++.|..+
T Consensus        93 -~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           93 -QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             -EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             -cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence             566665556688888776532 22221     113478899999 8877766432                 3678889


Q ss_pred             EccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccce--eEEEe-cCCcceEEeeecC-CCeEEEEeC-
Q 019326          158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK--LLCEL-DGKKRILCAAPGE-NGVLFTGGE-  230 (343)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~--~~~~~-~~~~~i~~~~~~~-~~~l~~~~~-  230 (343)
                      |..+++.............++++|+++.++++  ..+.|.+|++....  ....+ .... ...+++.+ +++.++... 
T Consensus       171 d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          171 DPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             ETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             eCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            98777644333333556789999999977777  56889999987421  11111 1223 66777774 444444333 


Q ss_pred             ---------CCcEEEEECCCCceeEEecccc---cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          231 ---------DRSITAWDTNSGKVAYCIEDAH---SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       231 ---------dg~i~i~d~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                               .+.|..+|.. ++.+..+....   ...++++++ ..+.         ++++....+.|..+++..
T Consensus       250 ~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~---------L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL---------LYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE---------EEEECSSCSEEEEEEC--
T ss_pred             ccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE---------EEEeecCCCceEEEeccc
Confidence                     4678889874 77777765222   234666665 3332         666666788899998864

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=1.5e-08  Score=79.30  Aligned_cols=189  Identities=10%  Similarity=0.038  Sum_probs=131.1

Q ss_pred             ceeeeeeeccc--cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEE
Q 019326          121 VLLTSVKVHKK--GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGI  196 (343)
Q Consensus       121 ~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~  196 (343)
                      +.+.++. |..  ....+.|+ ++.++++.+.+|.|+.+|+++++.+... .+.......+.+.+..++..  .++.+.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence            3445553 443  45788887 4677788888899999999999988877 76655443333344555555  7999999


Q ss_pred             EEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc-cc---ccEEEEEEEecCCCCCCCC
Q 019326          197 HQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA-HS---ARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       197 ~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-h~---~~v~~~~~~~~~~~~~~~~  272 (343)
                      ||..+.+.+.++.....-..+++ +++.|+.+..++.|.++|..+.+.+.++.-. +.   ..++.+.+. ++.      
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~------  192 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLCY-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV------  192 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEEE-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE------
T ss_pred             EECCcCcEEEEEeCCCceeEEec-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE------
Confidence            99999999999985544455555 5666777777999999999999988887621 22   244667766 332      


Q ss_pred             CCeEEEEEcCCCcEEEEeccCccccCCCccccc---------ccccceeEEEcCCCCcee
Q 019326          273 NPYLVASASSDGVICVWDVRMAIKEKPLPLAEA---------KTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~~  323 (343)
                         .++..-.+..|.+-|.++++....+.+...         ......+.||+++++..+
T Consensus       193 ---lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          193 ---IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             ---EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             ---EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence               555555688999999999865444443321         123457899999875543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=6.7e-07  Score=83.21  Aligned_cols=262  Identities=12%  Similarity=0.050  Sum_probs=165.2

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEec--------------cCCCCCeEEEEEeCCCCCCCCceEEEe
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIH--------------HHESSSVTSLAFYTPQNLSVPRNLFST  106 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~v~~l~~~~~~~~~~~~~l~s~  106 (343)
                      ...|.++... ...|..|+..+-|.++|..+++......              .. ...|.++...+++      .|..|
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~-~~~v~~i~~D~~g------~lWig  329 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLS-NASARYIFQDSFN------NIWIG  329 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBS-SSCEEEEEECSSC------CEEEE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCC-CCeEEEEEEeCCC------CEEEE
Confidence            4579999887 6677778875568889987765332111              12 4679999988877      68888


Q ss_pred             eCCCeEEEEECCCcceeeeee----------eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE---E-cCC
Q 019326          107 SADGFVSIFDADPFVLLTSVK----------VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH---K-IGK  172 (343)
Q Consensus       107 ~~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~-~~~  172 (343)
                      +.++-|..++..+.... .+.          .....|.++...+++. |..|+.++-|..+|..++......   . ...
T Consensus       330 t~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  407 (781)
T 3v9f_A          330 TWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSN  407 (781)
T ss_dssp             EBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred             ecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence            88888999988654322 221          1234689999888775 556666667889997655432211   1 124


Q ss_pred             cceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          173 EASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      .|.++...+++...+...++.+..++..+++......   ....|.++.....+.|..|+. +-|..||..+++......
T Consensus       408 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          408 SVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             BEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC
T ss_pred             ceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc
Confidence            5777888888877665566778889887765433221   345688888876677888877 568999988765433222


Q ss_pred             ccc-----cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceec
Q 019326          250 DAH-----SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       250 ~~h-----~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~  324 (343)
                       ..     ...|.++...+++.          |..|+.++-|..||.++........ ........|.++...+++.+-+
T Consensus       487 -~~~~~~~~~~i~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          487 -TSNSQLLENFVRSIAQDSEGR----------FWIGTFGGGVGIYTPDMQLVRKFNQ-YEGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             -TTTSSCSCSCEEEEEECTTCC----------EEEEESSSCEEEECTTCCEEEEECT-TTTCSCSCEEEEEECTTSCEEE
T ss_pred             -CcccccccceeEEEEEcCCCC----------EEEEEcCCCEEEEeCCCCeEEEccC-CCCCCCCeeEEEEECCCCCEEE
Confidence             12     35788888776664          5555554447778876643211100 1111234578888877776544


Q ss_pred             c
Q 019326          325 P  325 (343)
Q Consensus       325 ~  325 (343)
                      .
T Consensus       555 ~  555 (781)
T 3v9f_A          555 A  555 (781)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=1.5e-06  Score=80.80  Aligned_cols=269  Identities=12%  Similarity=0.075  Sum_probs=168.0

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc------CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH------HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ...|.++..+ ...|..|+.+ -+.+||..+++.......      .....|.++...+++      .|..|+..+-|.+
T Consensus       210 ~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------~lWigt~~~Gl~~  282 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN------KLWIATELNGIMI  282 (781)
T ss_dssp             CSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS------EEEEEESSSCEEE
T ss_pred             CCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC------CEEEEeCCCCeEE
Confidence            3568898887 5556666666 588999877654332111      114679999988877      6777887567888


Q ss_pred             EECCCcceeeeee--------------eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE----------c
Q 019326          115 FDADPFVLLTSVK--------------VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK----------I  170 (343)
Q Consensus       115 wd~~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~----------~  170 (343)
                      +|..+.+......              .....|.++...++|. |..|+.++-|..++..+........          .
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS  361 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence            9987654322111              1245799999988875 5667767778889887654322211          1


Q ss_pred             CCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEe----cCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          171 GKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCEL----DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      ...|.++...+++...+...++.+..|+..++......    .....|.++....++.|..|+.++-|..+|..+++. .
T Consensus       362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~  440 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-Q  440 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-E
T ss_pred             CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-E
Confidence            24577888888887766666777999998765433211    133568888887667788888877899999877653 3


Q ss_pred             Eecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc-ccccccceeEEEcCCCCcee
Q 019326          247 CIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA-EAKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       247 ~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~~  323 (343)
                      .+..  .....|.++...+++          .|..|+. +-|..+|..++......... .......|.++...+++.+-
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g----------~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  509 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNK----------KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW  509 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTS----------EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred             EeccCCCCCCeEEEEEECCCC----------CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence            3331  234678888776655          4555555 55888988765321100000 00113468888888887766


Q ss_pred             ccccCCC
Q 019326          324 RPQIGDS  330 (343)
Q Consensus       324 ~~~~~~~  330 (343)
                      +...+.+
T Consensus       510 igt~~~G  516 (781)
T 3v9f_A          510 IGTFGGG  516 (781)
T ss_dssp             EEESSSC
T ss_pred             EEEcCCC
Confidence            5544333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.06  E-value=3.7e-06  Score=71.53  Aligned_cols=217  Identities=12%  Similarity=0.029  Sum_probs=142.0

Q ss_pred             CCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           41 HLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        41 h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      ....+..|+|+  .+ ++++-...+.|+.+++...    .....+... ......|++.+.+.    +++++-...+.|.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavD~~~~----~lY~~d~~~~~I~  184 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHS----NIYWTDSVLGTVS  184 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-CSCEEEEEEETTTT----EEEEEETTTTEEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-CCCcccEEEEecCC----ceEEEECCCCeEE
Confidence            35568899998  34 4455556788999988752    223333333 46778899987441    5666666788999


Q ss_pred             EEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-
Q 019326          114 IFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-  189 (343)
                      +.+++.......+.........|+++|.+..|+....  .+.|...++............ ..+..+++++++..|+.+ 
T Consensus       185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence            9998765444444434446789999997666655543  377888888654433333322 567889999988888888 


Q ss_pred             -eCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          190 -TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       190 -~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                       ..+.|..+|+..........   .-.....+++..+.++++-...+.|..+|..+++.+..+. .......++.+..
T Consensus       265 ~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~-~~~~~p~~i~v~~  341 (400)
T 3p5b_L          265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLFH  341 (400)
T ss_dssp             TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE-CSCSCEEEEEEES
T ss_pred             CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe-cCCCCCceEEEEe
Confidence             56789999986543332222   1234556666556677777778899999988888777776 4444556665544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.04  E-value=1.1e-06  Score=74.48  Aligned_cols=215  Identities=13%  Similarity=0.051  Sum_probs=138.0

Q ss_pred             CCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           42 LSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        42 ~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      ...+..++|+   +.++++-...+.|..++++.......+... ......+++.+.+.    .++++-...+.|.+.+++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g----~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHD----KLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTT----EEEEEETTTTEEEECBTT
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCC----eEEEEcCCCCeEEEEeCC
Confidence            3457889987   445555556788999998866544434333 34566788887551    455666667889999887


Q ss_pred             CcceeeeeeeccccEEEEEEecCCCEEEEEe-CC-CeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eCCc
Q 019326          119 PFVLLTSVKVHKKGVNDLAVHHSGKLALTVG-RD-DCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       119 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      .......+.........++++|.+..|+... .. +.|..+++........... -..+..++++|++..|+.+  ..+.
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            5443333333335678999998766555544 34 6788888765443333222 2457889999988888777  5678


Q ss_pred             EEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          194 VGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      |..+++........+. .......+++..+.++++....+.|..+|..+++....+. .......+|++.
T Consensus       270 I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~-~~~~~p~gi~v~  338 (386)
T 3v65_B          270 IERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR-NKLHFPMDIHTL  338 (386)
T ss_dssp             EEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE-CSCSCCCCEEEE
T ss_pred             EEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc-cCCCCCceEEEE
Confidence            8889876543332232 2334566666556666677778889999977787776666 333344455544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.03  E-value=4.4e-06  Score=68.73  Aligned_cols=228  Identities=14%  Similarity=0.040  Sum_probs=140.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCC----Ceee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLST----SSSL   75 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~----~~~~   75 (343)
                      |+.+.. +.|+..++...       .   ...+  +. ....+..++|+  ++ .+++-...+.|..+++..    ....
T Consensus         4 ll~~~~-~~I~~i~~~~~-------~---~~~~--~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRS-------E---YTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             EEEECB-SSEEEEETTSC-------C---CEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             EEEECC-CeEEEEECCCc-------c---eEeh--hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            334443 56888888751       1   1111  12 34567889997  44 455555678999999876    2222


Q ss_pred             eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC--Ce
Q 019326           76 GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD--DC  153 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--~~  153 (343)
                      ..+... -.....+++.+.+.    +++++-...+.|.+.+++.......+.........++++|.+..|+.+...  +.
T Consensus        70 ~~~~~~-~~~p~glavd~~~~----~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~  144 (316)
T 1ijq_A           70 TVISRD-IQAPDGLAVDWIHS----NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK  144 (316)
T ss_dssp             EEECSS-CSCCCEEEEETTTT----EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EEEeCC-CCCcCEEEEeecCC----eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe
Confidence            223322 34567899986541    455666678899999987644333333334567899999966655555443  68


Q ss_pred             EEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEEE
Q 019326          154 LAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFT  227 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~  227 (343)
                      |...++.......... .-..+..+++++++..++.+  ..+.|..+|+..........   .......+++..+.++++
T Consensus       145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~  224 (316)
T 1ijq_A          145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT  224 (316)
T ss_dssp             EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred             EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEE
Confidence            8888875443322222 22567889999988888777  56789999987433222222   123456677755566666


Q ss_pred             EeCCCcEEEEECCCCceeEEec
Q 019326          228 GGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      -...+.|..++..+++.+..+.
T Consensus       225 d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          225 DIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             ETTTTEEEEEETTTCCCCEEEE
T ss_pred             ECCCCeEEEEeCCCCcceEEEe
Confidence            6677889999988787666665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.01  E-value=2.6e-06  Score=71.11  Aligned_cols=214  Identities=13%  Similarity=0.036  Sum_probs=135.5

Q ss_pred             CCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           43 SPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        43 ~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ..+..++|+   +.++++-...+.|..++++.......+... ......+++.+.+.    .++++-...+.|.+.+++.
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g----~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHD----KLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTT----EEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCC----eEEEEcCCCCeEEEEcCCC
Confidence            447888987   344555556788999998866544433333 34567889987551    4566666678999999876


Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEE-eCC-CeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eCCcE
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTV-GRD-DCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TEEKV  194 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i  194 (343)
                      ......+...-.....++++|.+..|+.. ... +.|..+++.......... .-..+..++++|++..|+.+  ..+.|
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence            44333333233467899999965555444 444 788888876543322222 12457889999988888777  56789


Q ss_pred             EEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          195 GIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       195 ~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      ..+++........+. .......+++..+.++++-...+.|..++..+++....+. .......++++.
T Consensus       228 ~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~-~~~~~p~gi~v~  295 (349)
T 3v64_C          228 ERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR-NKLHFPMDIHTL  295 (349)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE-CSCSCCCCEEEE
T ss_pred             EEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec-cCCCCCceEEEE
Confidence            999876543322222 2334566666555566666677889888877777666665 333344455443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.95  E-value=9.7e-06  Score=66.59  Aligned_cols=237  Identities=10%  Similarity=0.000  Sum_probs=146.7

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeee-eEeccCCCC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSL-GAIHHHESS   84 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~   84 (343)
                      ...|+.+++...       .......+..+    ..+..++|+   +.++++-...+.|..++.+..... ..+... -.
T Consensus        12 ~~~I~~i~l~~~-------~~~~~~~~~~~----~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~   79 (318)
T 3sov_A           12 RRDLRLVDATNG-------KENATIVVGGL----EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL   79 (318)
T ss_dssp             EEEEEEEETTCT-------TSCCEEEEEEE----EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CS
T ss_pred             cCeEEEEECCCC-------ceEEEEEecCC----CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CC
Confidence            467888887651       11111222221    246688887   455666666788999998866322 222222 34


Q ss_pred             CeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe--CCCeEEEEEccCC
Q 019326           85 SVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG--RDDCLAMVNLVRG  162 (343)
Q Consensus        85 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~wd~~~~  162 (343)
                      ....+++.+.+.    .++++-...+.|.+++++.......+.........++++|.+..|+.+.  ..+.|...++...
T Consensus        80 ~p~glavd~~~g----~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  155 (318)
T 3sov_A           80 SPDGLACDWLGE----KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS  155 (318)
T ss_dssp             CCCEEEEETTTT----EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred             CccEEEEEcCCC----eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence            567888887541    5566666778999999876433222223345678999998765555555  3578888887644


Q ss_pred             ceeEEEEc-CCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEE
Q 019326          163 RRSFYHKI-GKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWD  238 (343)
Q Consensus       163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  238 (343)
                      ........ -.....+++++++..++.+  ..+.|..+++.......... .......+++..+.++++-...+.|..++
T Consensus       156 ~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACN  235 (318)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEE
Confidence            33222222 2457889999988888777  57789999886433222222 23445666665566677767788999999


Q ss_pred             CCCCceeEEecccccccEEEEEEE
Q 019326          239 TNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      ..+++....+. .....+.++++.
T Consensus       236 ~~~G~~~~~i~-~~~~~P~~i~v~  258 (318)
T 3sov_A          236 KYTGEGLREIH-SDIFSPMDIHAF  258 (318)
T ss_dssp             TTTCCSCEEEE-CCCSSCCCEEEE
T ss_pred             CCCCCceEEEe-CCCCCCcEEEEe
Confidence            98888766665 332334445443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.85  E-value=2e-05  Score=66.76  Aligned_cols=231  Identities=10%  Similarity=-0.002  Sum_probs=144.0

Q ss_pred             EEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee
Q 019326           46 TTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT  124 (343)
Q Consensus        46 ~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  124 (343)
                      +|.+.. ..+|+.+. ...|+..++........+...  .....++|.+...    .++++-...+.|..+++.......
T Consensus        80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~--~~~~gl~~d~~~~----~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRE----LVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSC--SCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccccceeEeec-CccceeeccCCCcEEEEecCC--CccEEEEEecCCC----eEEEEeCCCCcEEEEecCCCCcEE
Confidence            344444 33444433 356888888866554444433  6688999997651    455565667899999988755333


Q ss_pred             eeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE--eC-CcEEEEEc
Q 019326          125 SVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV--TE-EKVGIHQA  199 (343)
Q Consensus       125 ~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~-~~i~~~d~  199 (343)
                      .+.........+++.+.+ +++++-...+.|.+.++............ ..+..++++|.+..++.+  .. +.|..+++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            333223345678898754 45555566788998888755433333222 567889999987777776  34 67888887


Q ss_pred             ccceeEEEec-CCcceEEeeec-CCC-eEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeE
Q 019326          200 EDAKLLCELD-GKKRILCAAPG-ENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYL  276 (343)
Q Consensus       200 ~~~~~~~~~~-~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  276 (343)
                      .......... .-.....++++ .++ +.++-+..+.|..+|+........+. .......+|++. .+.         +
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav~-~~~---------l  301 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF-EDS---------L  301 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEEE-TTE---------E
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEEE-CCE---------E
Confidence            6543333332 33446788887 344 44555567889999987443333333 334456788883 332         6


Q ss_pred             EEEEcCCCcEEEEeccCc
Q 019326          277 VASASSDGVICVWDVRMA  294 (343)
Q Consensus       277 l~s~~~dg~i~vwd~~~~  294 (343)
                      +++-...+.|..++..++
T Consensus       302 y~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          302 YWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEEETTTTEEEEEETTTC
T ss_pred             EEeeCCCCeEEEEECCCC
Confidence            677777788888885554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=1.1e-05  Score=66.51  Aligned_cols=189  Identities=8%  Similarity=-0.051  Sum_probs=119.8

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec----cCCCCCeEEEEEeC-CCCCCCCceEEEeeC--------
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH----HHESSSVTSLAFYT-PQNLSVPRNLFSTSA--------  108 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~--------  108 (343)
                      .+..++++  ...|+.+...+.|..+|..+++. ..+.    +........+++.+ ++     ++.++-..        
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-----~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-----IVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-----CEEEEESCSSCCTTCH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-----EEEEECCccccccccc
Confidence            57888887  45677776666688898776532 2221    11124578899999 87     45554322        


Q ss_pred             ---------CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEE-eCCCeEEEEEccCC---ceeEEEEcCCcce
Q 019326          109 ---------DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV-GRDDCLAMVNLVRG---RRSFYHKIGKEAS  175 (343)
Q Consensus       109 ---------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~~i~~wd~~~~---~~~~~~~~~~~~~  175 (343)
                               ++.|..||..+++...... .......++++|+++.|+.+ ...+.|..|++...   .......... +.
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~  232 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG  232 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence                     3678889987665432222 22345679999999866555 55689999998753   2211122334 77


Q ss_pred             EEEEeCCCCEEEEE-e----------CCcEEEEEcccceeEEEecCC-----cceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          176 LIKFDGSGEKFFMV-T----------EEKVGIHQAEDAKLLCELDGK-----KRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       176 ~~~~~~~~~~~~~~-~----------~~~i~~~d~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      .++++++|+++++. .          .+.|..+|. .++.+..+...     ..+.++++.++.++++....+.|..+++
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence            89999999877666 4          356888886 46666666522     3455666645555555556788999987


Q ss_pred             CC
Q 019326          240 NS  241 (343)
Q Consensus       240 ~~  241 (343)
                      ..
T Consensus       312 ~~  313 (322)
T 2fp8_A          312 DK  313 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            63

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.83  E-value=2.5e-05  Score=71.90  Aligned_cols=215  Identities=13%  Similarity=0.028  Sum_probs=137.1

Q ss_pred             CCCeEEEEec---CceEEEeeCCCeEEEEEcCCC----eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEE
Q 019326           42 LSPITTVAVS---GTAAASGGTDDTIHLYDLSTS----SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSI  114 (343)
Q Consensus        42 ~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i  114 (343)
                      ...+..|+|+   +.++++-...+.|+.+++...    .....+... ......|++.+.+.    +++++-...+.|.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l~~P~GLAvD~~~~----~LY~tD~~~~~I~v  497 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHS----NIYWTDSVLGTVSV  497 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTTT----EEEEEETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-CCCcceeeeeecCC----cEEEEecCCCeEEE
Confidence            4567788887   445555566788998988753    223333323 45677899987762    46666667889999


Q ss_pred             EECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE--
Q 019326          115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV--  189 (343)
Q Consensus       115 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  189 (343)
                      .+++.......+.........|+++|....|+....  .+.|...++............ ..+..|++++.+..|+.+  
T Consensus       498 ~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          498 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC
Confidence            999765433333334456889999997655655543  368888888755543333333 568889999888888877  


Q ss_pred             eCCcEEEEEcccceeEEEecC---CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE
Q 019326          190 TEEKVGIHQAEDAKLLCELDG---KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~~~~---~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  262 (343)
                      ..+.|..+++........+..   -.....+++..+.++++-...+.|...|..+++.+..+. .......+|++.
T Consensus       578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~-~~l~~P~~i~v~  652 (791)
T 3m0c_C          578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLF  652 (791)
T ss_dssp             TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE-CSCSCCCCEEEE
T ss_pred             CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEee-cCCCCceeEeee
Confidence            567788888865444333331   223456666555566666677889999988887666665 223333444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.81  E-value=1.4e-05  Score=65.47  Aligned_cols=232  Identities=9%  Similarity=-0.041  Sum_probs=136.2

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           72 SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        72 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      .+.+..+...  .....++|.+++     +++++-..++.|..||... +....+. ....+..+++.++++++++....
T Consensus        22 ~~~~~~~p~~--~~pegia~~~~g-----~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           22 AKIITSFPVN--TFLENLASAPDG-----TIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             EEEEEEECTT--CCEEEEEECTTS-----CEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECT
T ss_pred             ceEeEeCCCC--CCcceEEECCCC-----CEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccC
Confidence            3445555433  567889999988     6666666789999999875 3333333 34568899999999866655433


Q ss_pred             --CeEEEEEccCCceeEEEEcC--CcceEEEEeCCCCEEEEE-eCCcEEEEEcccce--eEEEe------c---CCcceE
Q 019326          152 --DCLAMVNLVRGRRSFYHKIG--KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAK--LLCEL------D---GKKRIL  215 (343)
Q Consensus       152 --~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~--~~~~~------~---~~~~i~  215 (343)
                        ..|..+|..+++........  .....++..+.+..+++- ..+.|..+|...++  .....      .   .-....
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence              24777787777754443332  223445555555444444 57888888876542  21100      0   112234


Q ss_pred             EeeecCCC-eEEEEeCCCcEEEEECCC-Cce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          216 CAAPGENG-VLFTGGEDRSITAWDTNS-GKV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       216 ~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      .+.. +++ ++++-...+.|..|++.. ++.  ...+.  .......+++.+++.         ++++....+.|.+++.
T Consensus       173 gis~-dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~---------l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          173 GLKR-FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGN---------LYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCC---------EEEECBTTCCEEEECT
T ss_pred             CcCc-CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCC---------EEEEeCCCCeEEEECC
Confidence            4433 444 445556678999999874 321  11221  113456677777765         7777777789999987


Q ss_pred             cCccccCCCcccccccc-cceeEEEcC---CCCceeccccC
Q 019326          292 RMAIKEKPLPLAEAKTN-SRLTCLAGS---STKSFKRPQIG  328 (343)
Q Consensus       292 ~~~~~~~~~~~~~~~~~-~~i~~~~~s---~~~~~~~~~~~  328 (343)
                      . +...   .+...... ....++++.   +++..+.....
T Consensus       241 ~-G~~~---~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          241 D-RSTT---IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             T-CCEE---EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             C-CCEE---EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            5 3211   11112222 458899998   77655444433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.78  E-value=4.5e-05  Score=63.57  Aligned_cols=235  Identities=10%  Similarity=-0.017  Sum_probs=145.5

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ....+|.+.. ..+|+.+. ...|+..++........+...  ..+..++|.+..+    .++++-...+.|..+++...
T Consensus        33 ~d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~--~~~~~l~~d~~~~----~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNL--ENAIALDFHHRRE----LVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             TTSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSC--SCEEEEEEETTTT----EEEEEETTTTEEEEEETTSC
T ss_pred             CCCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCC--CceEEEEEecccc----EEEEEeccCCceEEEecCCC
Confidence            3445566655 34444433 355888888765554444433  5688999997661    45555556789999998775


Q ss_pred             ceeeeeeeccccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eC-CcEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TE-EKVG  195 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~-~~i~  195 (343)
                      .....+.........+++.+.+ +++++-...+.|.+.++........... -..+..++++|.+..++.+  .. +.|.
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence            5333333223455789999754 4555656678999999876543333322 2567889999977777666  34 6788


Q ss_pred             EEEcccceeEEEec-CCcceEEeeec-CCCeE-EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCC
Q 019326          196 IHQAEDAKLLCELD-GKKRILCAAPG-ENGVL-FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                      .+++.......... .-.....++++ .++.| ++-...+.|..+|+........+. .......+|++. .+.      
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav~-~~~------  257 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVF-EDS------  257 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEE-TTE------
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CCCCCceEEEEE-CCE------
Confidence            88776433222222 23456788887 35544 444556789999987443333333 334566788883 332      


Q ss_pred             CCeEEEEEcCCCcEEEEeccCc
Q 019326          273 NPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       273 ~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                         ++++-...+.|...+..++
T Consensus       258 ---ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          258 ---LYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             ---EEEEETTTTEEEEEETTTC
T ss_pred             ---EEEecCCCCeEEEEEccCC
Confidence               6666667788888875444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.76  E-value=9.9e-05  Score=66.46  Aligned_cols=227  Identities=10%  Similarity=-0.008  Sum_probs=144.4

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCC
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES   83 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~   83 (343)
                      +..+.|+..++..       ...   .....+. .-..+..|+|+   +..+++-..++.|..++++.......+... .
T Consensus        12 s~~~~I~~i~l~~-------~~~---~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~   79 (628)
T 4a0p_A           12 SRRADIRRISLET-------NNN---NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-L   79 (628)
T ss_dssp             EETTEEEEEESSC-------TTC---EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C
T ss_pred             EeCCcEEEEECCC-------CCc---ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-C
Confidence            3557888888875       111   1111111 23457889998   445556666789999998755443334333 3


Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe--CCCeEEEEEccC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG--RDDCLAMVNLVR  161 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~wd~~~  161 (343)
                      .....|++.+.+.    +++++-...+.|.+.+++.......+...-.....|+++|....|+...  ..+.|...++..
T Consensus        80 ~~P~GlAvD~~~~----~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG  155 (628)
T 4a0p_A           80 DYPEGMAVDWLGK----NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG  155 (628)
T ss_dssp             SCCCEEEEETTTT----EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCcceEEEEeCCC----EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence            5577888887651    4566666678999999876433222223334678999998655555554  256788888766


Q ss_pred             CceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          162 GRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      .........-..+..+++++++..|+.+  ..+.|..+++.................+++..+.++++-...+.|...|.
T Consensus       156 ~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence            5544444444678899999988888888  57788899986543321112333445677656556666666889999998


Q ss_pred             CCCceeEEec
Q 019326          240 NSGKVAYCIE  249 (343)
Q Consensus       240 ~~~~~~~~~~  249 (343)
                      .+++....+.
T Consensus       236 ~tg~~~~~l~  245 (628)
T 4a0p_A          236 TSGQNRTIIQ  245 (628)
T ss_dssp             TTCCSCEEEE
T ss_pred             CCCCceEEEe
Confidence            7776555444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.76  E-value=4.6e-05  Score=62.31  Aligned_cols=222  Identities=10%  Similarity=0.006  Sum_probs=129.5

Q ss_pred             eEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-
Q 019326           32 LTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-  108 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-  108 (343)
                      .+.+..+... .....++|+  ++++++-..++.|..||.+.. ....+..  ......+++.+++     +++++... 
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--~~~p~gia~~~dG-----~l~vad~~~   92 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--EGKVSGLAFTSNG-----DLVATGWNA   92 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--SSEEEEEEECTTS-----CEEEEEECT
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--CCCceeEEEcCCC-----cEEEEeccC
Confidence            3444555432 567889997  665666557899999998753 3333333  3578899999998     55554433 


Q ss_pred             CC-eEEEEECCCcceeeeeee-ccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce-eEEEE-------c-C--Ccce
Q 019326          109 DG-FVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR-SFYHK-------I-G--KEAS  175 (343)
Q Consensus       109 dg-~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~-------~-~--~~~~  175 (343)
                      ++ .|..+|..+++....... .......++..+++..+++-..++.|..+|..+++. +....       . .  ....
T Consensus        93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence            22 477777777664332221 112334555555555555555688999999875431 11110       0 1  1234


Q ss_pred             EEEEeCCCCEEEEE--eCCcEEEEEccc-cee--EEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE--E
Q 019326          176 LIKFDGSGEKFFMV--TEEKVGIHQAED-AKL--LCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY--C  247 (343)
Q Consensus       176 ~~~~~~~~~~~~~~--~~~~i~~~d~~~-~~~--~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--~  247 (343)
                      .+  ++++..++++  ..+.|..|++.. ++.  ...+........++++ ++++.++....+.|.++|.. ++...  .
T Consensus       173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~  249 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ  249 (306)
T ss_dssp             EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence            44  7888877777  578899999864 321  1111111233445665 45555555567889999975 65532  2


Q ss_pred             ecccccccEEEEEEE---ecCC
Q 019326          248 IEDAHSARVKGIVVL---TKND  266 (343)
Q Consensus       248 ~~~~h~~~v~~~~~~---~~~~  266 (343)
                      +. .....+++++|.   +++.
T Consensus       250 ~~-~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          250 AE-QGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             GG-GTCTTEEEEEECCSTTTTT
T ss_pred             cc-cccCCceEEEEecccCCCC
Confidence            33 233567889987   5544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=0.00013  Score=62.68  Aligned_cols=149  Identities=12%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             CeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CC----eEEEE
Q 019326           44 PITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DG----FVSIF  115 (343)
Q Consensus        44 ~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg----~i~iw  115 (343)
                      ....|+++   +..|+.+...+.|+.+|++++....... . ......++|++++     +.|+.+.. ++    .+..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~-~~~P~~ia~d~~G-----~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-G-LSKVRTICWTHEA-----DSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-C-CSCEEEEEECTTS-----SEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-C-CCCcceEEEeCCC-----CEEEEEeCCCCcccceEEEE
Confidence            34567776   2556666655889999988766544433 3 4678899999998     65555554 22    34444


Q ss_pred             ECCCccee--eeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCceeEEEEcC--CcceEEEEeCCCCEEEEE-
Q 019326          116 DADPFVLL--TSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRRSFYHKIG--KEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       116 d~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-  189 (343)
                      +. .+...  ..+.. ......++++| ++.++++-..++.|..++...+.........  .....++++|++++++.+ 
T Consensus       211 ~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          211 TR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             EG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             eC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            43 22222  22322 23456788999 6777777667889999998876543333332  357889999999976666 


Q ss_pred             -eCCcEEEEEccc
Q 019326          190 -TEEKVGIHQAED  201 (343)
Q Consensus       190 -~~~~i~~~d~~~  201 (343)
                       ..+.|..++...
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence             678888887653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.62  E-value=2.3e-06  Score=77.83  Aligned_cols=262  Identities=9%  Similarity=-0.020  Sum_probs=142.4

Q ss_pred             cCceEEEeeCCC-----------eEEEEEcCCCeee--eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEE
Q 019326           51 SGTAAASGGTDD-----------TIHLYDLSTSSSL--GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFD  116 (343)
Q Consensus        51 ~~~~l~s~~~dg-----------~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd  116 (343)
                      .+..++.|+.+.           .+.+||..+++..  ..+.........++++..++     ++++.|+. +..+.+||
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~lyv~GG~~~~~v~~yd  271 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVTGGNDAKKTSLYD  271 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEECSSSTTCEEEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-----CEEEeCCCCCCceEEec
Confidence            367777776543           5889999887532  23322213334456777777     68888884 55899999


Q ss_pred             CCCcceeeeeeeccc-cEEEEEEecCCCEEEEEe-CC-----CeEEEEEccCCceeEEE-----EcCCcceEEEEeCCCC
Q 019326          117 ADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVG-RD-----DCLAMVNLVRGRRSFYH-----KIGKEASLIKFDGSGE  184 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~-~d-----~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~  184 (343)
                      ..+.+-...-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+++-....     .....-....+..++.
T Consensus       272 ~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~  351 (656)
T 1k3i_A          272 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH  351 (656)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred             CcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCc
Confidence            876432221111111 113455667889999998 34     56899999877643321     1111000011123333


Q ss_pred             EEEEE-e---------CCcEEEEEcccceeEEEec-CC---------cceEEeee--cCCCeEEEEeCCC----------
Q 019326          185 KFFMV-T---------EEKVGIHQAEDAKLLCELD-GK---------KRILCAAP--GENGVLFTGGEDR----------  232 (343)
Q Consensus       185 ~~~~~-~---------~~~i~~~d~~~~~~~~~~~-~~---------~~i~~~~~--~~~~~l~~~~~dg----------  232 (343)
                      .++.+ .         ...+..||..+........ ..         ..-.++.+  .++.+++.|+.++          
T Consensus       352 iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~  431 (656)
T 1k3i_A          352 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNA  431 (656)
T ss_dssp             CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCE
T ss_pred             eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcc
Confidence            33333 2         3456788887765433322 11         12233333  2567777777532          


Q ss_pred             -cEEEEECCCCceeEEe-ccccccc-EEEEEEEecCCCCCCCCCCeEEEEEcCC-----------CcEEEEeccCccccC
Q 019326          233 -SITAWDTNSGKVAYCI-EDAHSAR-VKGIVVLTKNDGGSTAENPYLVASASSD-----------GVICVWDVRMAIKEK  298 (343)
Q Consensus       233 -~i~i~d~~~~~~~~~~-~~~h~~~-v~~~~~~~~~~~~~~~~~~~~l~s~~~d-----------g~i~vwd~~~~~~~~  298 (343)
                       .|.+||..+.+-.... ...+... -.+++..+++.         +++.|+.+           ..+.+||..+..-..
T Consensus       432 ~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~  502 (656)
T 1k3i_A          432 HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  502 (656)
T ss_dssp             EEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             eEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence             6788888776543332 1122222 23444555665         88888854           468999998764221


Q ss_pred             CCcccccccccceeEEEcCCCCceeccccC
Q 019326          299 PLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       299 ~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ..+..  .......+....+++++++.|..
T Consensus       503 ~~~~~--~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          503 QNPNS--IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCC--CccccccHhhcCCCcEEEecCCC
Confidence            11111  11111223445688888888875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.62  E-value=6.7e-05  Score=61.37  Aligned_cols=192  Identities=15%  Similarity=0.230  Sum_probs=127.2

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCc--eEEEeeC---CCeEEEEECC--Ccceeee
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPR--NLFSTSA---DGFVSIFDAD--PFVLLTS  125 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~l~s~~~---dg~i~iwd~~--~~~~~~~  125 (343)
                      ..++.....+-+.+||+ +|+.+..+..   +.++.+...|.-.+....  ++++...   +++|.+|+++  ++ .+..
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~  115 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS  115 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence            45666667788999999 7888888753   467777776632000001  2333333   5799999773  33 2433


Q ss_pred             eee------cc-ccEEEEEE--ecC-CC-EEEEEeCCCeEEEEEcc-------CCceeEEEEcCCcceEEEEeCCCCEEE
Q 019326          126 VKV------HK-KGVNDLAV--HHS-GK-LALTVGRDDCLAMVNLV-------RGRRSFYHKIGKEASLIKFDGSGEKFF  187 (343)
Q Consensus       126 ~~~------~~-~~v~~i~~--~~~-~~-~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (343)
                      +..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.+..+..+.++..|...+....++
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            311      11 45666777  664 43 68888889999999983       335677888889999999999989999


Q ss_pred             EE-eCCcEEEEEcc-----cceeEEEecCC---cceEEeeec---CC-CeEEEEe-CCCcEEEEECC-CCceeEEec
Q 019326          188 MV-TEEKVGIHQAE-----DAKLLCELDGK---KRILCAAPG---EN-GVLFTGG-EDRSITAWDTN-SGKVAYCIE  249 (343)
Q Consensus       188 ~~-~~~~i~~~d~~-----~~~~~~~~~~~---~~i~~~~~~---~~-~~l~~~~-~dg~i~i~d~~-~~~~~~~~~  249 (343)
                      ++ .+..|..|+.+     +.+.+..+...   ..+..+++.   ++ ++|++++ .+.+..+||.. +.+.+..+.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            98 66667777754     34555555422   356777663   22 3565555 67799999997 667777764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.60  E-value=0.00015  Score=59.83  Aligned_cols=229  Identities=11%  Similarity=0.072  Sum_probs=130.4

Q ss_pred             CCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEec---cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           42 LSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIH---HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        42 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      ...+.+|.|.++.++.++.++.|.. ..+.++.-....   .. ...+..+.+.+++     ..++ ++.+|.|.. ..+
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~-~~~~~~i~~~~~~-----~~~~-~~~~g~v~~-S~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKL-PGSPRLIKALGNG-----SAEM-ITNVGAIYR-TKD  149 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTC-SSCEEEEEEEETT-----EEEE-EETTCCEEE-ESS
T ss_pred             CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCC-CCCeEEEEEECCC-----CEEE-EeCCccEEE-EcC
Confidence            4468888888544555566675543 333344333222   12 3457788887666     4444 445665432 122


Q ss_pred             Ccceeeee-eeccccEEEEEEecCCCEEEEEeCCCeEEEEEc--cCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEE
Q 019326          119 PFVLLTSV-KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL--VRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVG  195 (343)
Q Consensus       119 ~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  195 (343)
                      .++.-... ......+..+++.+++.+++.+...+..+-.|-  .+-+.+ .......+..+.+.+++..++++.++.+.
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~  228 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIA  228 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEEEeCCceEE
Confidence            22221111 234457889999998877766644433333332  122222 12234567778889998887777777776


Q ss_pred             EEEcccceeEEEec-----CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCC
Q 019326          196 IHQAEDAKLLCELD-----GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       196 ~~d~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~  268 (343)
                      +.+...++....+.     ....+..+.+.++..+++++.+|.| .+....++.-..+..  .+...+.++.+.+++   
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~---  304 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD---  304 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT---
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC---
Confidence            65433344444333     2235788888755555555667777 455555655554441  123567888887544   


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEec
Q 019326          269 STAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                             .++.++.+|.|.-++-
T Consensus       305 -------~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          305 -------QGFILGQKGILLRYVT  320 (327)
T ss_dssp             -------EEEEECSTTEEEEECC
T ss_pred             -------ceEEEcCCceEEEEcC
Confidence                   6778888998776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.60  E-value=5.4e-05  Score=65.01  Aligned_cols=228  Identities=11%  Similarity=0.057  Sum_probs=134.1

Q ss_pred             CeEEEEecC----ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-----eEEE
Q 019326           44 PITTVAVSG----TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-----FVSI  114 (343)
Q Consensus        44 ~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~i  114 (343)
                      ....|+++.    ..|+.+...+.|+.+|..+++...... . ......+++.+++     + |+.+...+     .+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~-~~~P~giavd~dG-----~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-N-IGQCADVNFTLNG-----D-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-C-CSCEEEEEECTTC-----C-EEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-C-CCCccEEEECCCC-----C-EEEEcCCCCcccceEEE
Confidence            456788873    566666555889999998776554443 3 4678999999999     6 44444321     2333


Q ss_pred             EECCCcce-eeeeeeccccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCce-eEEEEcC--CcceEEEEeCCCCEEEEE
Q 019326          115 FDADPFVL-LTSVKVHKKGVNDLAVHH-SGKLALTVGRDDCLAMVNLVRGRR-SFYHKIG--KEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       115 wd~~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~  189 (343)
                      .+...... ...+. .......++++| ++.++++-..++.|+.+|..++.. .......  .....++++|+++.++.+
T Consensus       212 ~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          212 FTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             ECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             EECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            33322111 01222 233456788999 666666666778899999887765 2222222  223469999999977776


Q ss_pred             --eCCcEEEEEcc--cceeE--EEecC----------------CcceEEeee---------cCC-CeEEEEeCCCcEEEE
Q 019326          190 --TEEKVGIHQAE--DAKLL--CELDG----------------KKRILCAAP---------GEN-GVLFTGGEDRSITAW  237 (343)
Q Consensus       190 --~~~~i~~~d~~--~~~~~--~~~~~----------------~~~i~~~~~---------~~~-~~l~~~~~dg~i~i~  237 (343)
                        ..+.|..++..  ++...  ..+..                -.....+++         ..+ ++.++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              56788887765  22211  11110                122456777         444 344455556789998


Q ss_pred             ECCCCceeEEecccc------------------cccEEEEEEE-ecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          238 DTNSGKVAYCIEDAH------------------SARVKGIVVL-TKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       238 d~~~~~~~~~~~~~h------------------~~~v~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +. ++.. ..+- +.                  -....+|++. +++.         ++++=...++|+.++++
T Consensus       371 ~~-~G~v-~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~---------lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRV-TTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC---------FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEE-EEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE---------EEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCE-EEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCE---------EEEEeCCCCEEEEEecC
Confidence            85 4543 3332 11                  1236778887 4443         55555566777777664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.58  E-value=0.00017  Score=59.20  Aligned_cols=215  Identities=13%  Similarity=0.089  Sum_probs=134.5

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC---cceeee-eeeccccEEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP---FVLLTS-VKVHKKGVNDLA  137 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~-~~~~~~~v~~i~  137 (343)
                      ..|+..|+.+.+....+..  ......++|.+.++    ..+++-..++.|..+++.+   +..... +...-.....++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~--~~~p~g~~~d~~~~----~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS--CSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             CeEEEEECCCcceEehhcC--CCceEEEEEEeCCC----EEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence            4589999988766555543  36788999998661    4555656678999999876   122222 222223557899


Q ss_pred             EecCC-CEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eC-CcEEEEEcccceeEEEe-c-C
Q 019326          138 VHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TE-EKVGIHQAEDAKLLCEL-D-G  210 (343)
Q Consensus       138 ~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-~~i~~~d~~~~~~~~~~-~-~  210 (343)
                      +.+.+ +..++-...+.|.+.++.......... ....+..++++|.+..++.+  .. +.|..+++... ....+ . .
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~  162 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTEN  162 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSS
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECC
Confidence            98754 455555678899999987654433333 23567889999977766666  32 67888877543 33333 2 2


Q ss_pred             CcceEEeeec-CCCeE-EEEeCCCcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          211 KKRILCAAPG-ENGVL-FTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       211 ~~~i~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      -.....++++ +++.| ++-+..+.|..+|+.. .....+..  .......+|++.. +.         ++++-...+.|
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~~---------ly~~d~~~~~V  231 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-DK---------VFWTDIINEAI  231 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-TE---------EEEEETTTTEE
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-CE---------EEEEECCCCeE
Confidence            3456788887 34555 4445667899999874 33333321  1234467788753 32         66677777889


Q ss_pred             EEEeccCc
Q 019326          287 CVWDVRMA  294 (343)
Q Consensus       287 ~vwd~~~~  294 (343)
                      ..++..++
T Consensus       232 ~~~~~~~g  239 (316)
T 1ijq_A          232 FSANRLTG  239 (316)
T ss_dssp             EEEETTTC
T ss_pred             EEEeCCCC
Confidence            88887655

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.56  E-value=0.0002  Score=59.13  Aligned_cols=262  Identities=9%  Similarity=-0.050  Sum_probs=134.9

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc---CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH---HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      ...+.+|.|. .+.++.++..|.| +...+.++.-.....   .....+.++.+.+ +     ..+ .++..+.|.. ..
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-----~~~-~~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-----EGW-IVGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-----EEE-EEEETTEEEE-ES
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-----eEE-EEECCCeEEE-EC
Confidence            4579999997 4433335667765 334444432222211   1145789999986 4     344 4556675544 22


Q ss_pred             CCcc---eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE--EcCCcceEEEEeCCCCEEEEEeCC
Q 019326          118 DPFV---LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH--KIGKEASLIKFDGSGEKFFMVTEE  192 (343)
Q Consensus       118 ~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  192 (343)
                      +.++   .+.....+.+.+..+.+.+++..++++ .++.|.. ....++.-...  .....+..+.+.+++.+++++..+
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC
Confidence            3232   222111123456778887776655554 4554422 11223221111  223457788899998888877666


Q ss_pred             cEEEEEcccceeEEEe--cCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEeccc---ccccEEEEEEEecCCC
Q 019326          193 KVGIHQAEDAKLLCEL--DGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA---HSARVKGIVVLTKNDG  267 (343)
Q Consensus       193 ~i~~~d~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~  267 (343)
                      .+..-+-..++....+  .....+..+.+.+++.++.++.+|.+++.+...++.-..+...   +...+.++++.+++. 
T Consensus       184 ~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-  262 (327)
T 2xbg_A          184 SFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-  262 (327)
T ss_dssp             SEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-
T ss_pred             cEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-
Confidence            5544321112222222  2455677888876556667777888877643323332222211   234578888876554 


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccc
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                              +++.+ .+|.| ++..+.+..-..... .......+.++.+.+++.+.+.+
T Consensus       263 --------~~~~g-~~g~i-~~S~DgG~tW~~~~~-~~~~~~~~~~v~~~~~~~~~~~G  310 (327)
T 2xbg_A          263 --------VWLAG-GAGAL-LCSQDGGQTWQQDVD-VKKVPSNFYKILFFSPDQGFILG  310 (327)
T ss_dssp             --------EEEEE-STTCE-EEESSTTSSCEECGG-GTTSSSCCCEEEEEETTEEEEEC
T ss_pred             --------EEEEe-CCCeE-EEeCCCCcccEEcCc-cCCCCCCeEEEEEECCCceEEEc
Confidence                    55544 47766 344443321111110 00112346777776666655444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.56  E-value=0.00026  Score=60.11  Aligned_cols=224  Identities=14%  Similarity=0.080  Sum_probs=140.0

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----ceeeeeeec
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----VLLTSVKVH  129 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~  129 (343)
                      +|+.+. ...|+..++........+..  ...+..|+|.+..+    .++++-...+.|+.+++...    .....+...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d~~~~----~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS--CSCEEEEEEETTTT----EEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc--cCcceEEeeeeccC----ceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence            444433 46799999887655444443  46788999998661    45555556788999998652    222222223


Q ss_pred             cccEEEEEEecC-CCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--e-CCcEEEEEccccee
Q 019326          130 KKGVNDLAVHHS-GKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--T-EEKVGIHQAEDAKL  204 (343)
Q Consensus       130 ~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-~~~i~~~d~~~~~~  204 (343)
                      ......+++.+. +++.++-...+.|.+.++.......... ....+..++++|.+..++.+  . .+.|...++.....
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence            346788999984 5555566667899999987665444443 23557889999977777666  2 36788888765443


Q ss_pred             EEEec-CCcceEEeeec-CCCeEEEE-eCCCcEEEEECCCCceeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          205 LCELD-GKKRILCAAPG-ENGVLFTG-GEDRSITAWDTNSGKVAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       205 ~~~~~-~~~~i~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      ...+. .-.....++++ .++.|+.+ ...+.|..+|+........+.. .......+|++..+ .         ++++-
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~-~---------lywtd  307 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K---------VFWTD  307 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETT-E---------EEEEE
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCC-E---------EEEec
Confidence            33333 23567788887 44555444 5567899999874332222220 12344567777433 2         66677


Q ss_pred             cCCCcEEEEeccCc
Q 019326          281 SSDGVICVWDVRMA  294 (343)
Q Consensus       281 ~~dg~i~vwd~~~~  294 (343)
                      ...+.|..+|..++
T Consensus       308 ~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          308 IINEAIFSANRLTG  321 (400)
T ss_dssp             SSSCSEEEEESSSC
T ss_pred             CCCCeEEEEEcCCC
Confidence            77788988886655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.50  E-value=0.00016  Score=59.20  Aligned_cols=183  Identities=16%  Similarity=0.248  Sum_probs=121.1

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecC----CC---EEEEEe-C--CCeEEEEEcc--CCceeEEE
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS----GK---LALTVG-R--DDCLAMVNLV--RGRRSFYH  168 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~---~l~~~~-~--d~~i~~wd~~--~~~~~~~~  168 (343)
                      .+++.....+-+.+||+ +++.++.+..  +.++.+..-|+    ++   ++++.. .  +++|.+|++.  ++. +...
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            46777777889999999 7788888753  56777777663    21   233333 3  5889999773  333 2222


Q ss_pred             -----E--cC-CcceEEEE--eCC-CC-EEEEE-eCCcEEEEEc-------ccceeEEEecCCcceEEeeecC-CCeEEE
Q 019326          169 -----K--IG-KEASLIKF--DGS-GE-KFFMV-TEEKVGIHQA-------EDAKLLCELDGKKRILCAAPGE-NGVLFT  227 (343)
Q Consensus       169 -----~--~~-~~~~~~~~--~~~-~~-~~~~~-~~~~i~~~d~-------~~~~~~~~~~~~~~i~~~~~~~-~~~l~~  227 (343)
                           .  .. ..+..+++  +|. +. ++++. .++.+..|++       .+.+.++++.....+..+...+ ...|+.
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence                 1  11 45666777  664 44 45555 7899999988       3457788888777888888874 579999


Q ss_pred             EeCCCcEEEEECC-----CCceeEEeccccc-ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          228 GGEDRSITAWDTN-----SGKVAYCIEDAHS-ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       228 ~~~dg~i~i~d~~-----~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +-++.-|..++.+     +++.+..+..++- ..+..|++.+...     ..+++|+|+=.++++.+||.+
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~-----g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD-----GKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG-----GCEEEEEEEGGGTEEEEEESS
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC-----CCEEEEEEcCCCCEEEEEECC
Confidence            9998777777754     3455555532332 4789999865431     012245555467899999997

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.49  E-value=4.2e-07  Score=82.96  Aligned_cols=216  Identities=13%  Similarity=0.024  Sum_probs=127.8

Q ss_pred             CCeEEEEec--CceEE-EeeCCCeEEEEEcCC----CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEE
Q 019326           43 SPITTVAVS--GTAAA-SGGTDDTIHLYDLST----SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF  115 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw  115 (343)
                      ..+..|+|+  ++.|+ +-...+.|+.+++.+    ......+... ......|++.+.+.    +++++-...+.|.++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-~~~P~glavD~~~g----~LY~tD~~~~~I~v~  480 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIHS----NIYWTDSVLGTVSVA  480 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-C--CCCEECCCSSS----BCEECCTTTSCEEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-CCCcceEEEEeeCC----cEEEEeccCCeEEEE
Confidence            345677887  44444 444567899999875    2222222222 23455678875441    455665667899999


Q ss_pred             ECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--e
Q 019326          116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--T  190 (343)
Q Consensus       116 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~  190 (343)
                      ++........+.........|+++|.+..|+.+..  .+.|..+++........... -..+..++++|++..|+.+  .
T Consensus       481 d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          481 DTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             BSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred             ecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence            98764433333322345678899987655554443  26788777754332222111 2456789999987777777  5


Q ss_pred             CCcEEEEEcccceeEEEecC---CcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEec
Q 019326          191 EEKVGIHQAEDAKLLCELDG---KKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~~---~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      .+.|..+++........+..   ......+++..+.++++....+.|..+|..+++.+..+. .....+.+|++.+.
T Consensus       561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~-~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVLFHQ  636 (699)
T ss_dssp             TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC-TTCSSCCCCCBCSS
T ss_pred             CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee-cCCCCCcEEEEeCc
Confidence            67899999865333222221   123345555455666677777899999998888777775 33334455554433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.48  E-value=0.00024  Score=55.90  Aligned_cols=197  Identities=11%  Similarity=0.148  Sum_probs=129.9

Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec-cccEEEEEEecCCCEEEEEeCCCeEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH-KKGVNDLAVHHSGKLALTVGRDDCLA  155 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~i~  155 (343)
                      .+.+- ...+..+++.|+++    .++++...++.|...|.. ++.++.+... ......|++.+++.++++.-.++.+.
T Consensus        21 ~l~g~-~~~lSGla~~~~~~----~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGI-TNNISSLTWSAQSN----TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTC-CSCEEEEEEETTTT----EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             ECCCc-ccCcceeEEeCCCC----EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            34455 56799999999862    455567778999999998 7777777532 24677889998887767766778899


Q ss_pred             EEEccCCce---eEEEEcC-------CcceEEEEeCCCCEEEEE-eCCcEEEEEccc---ceeEEEec--------CCcc
Q 019326          156 MVNLVRGRR---SFYHKIG-------KEASLIKFDGSGEKFFMV-TEEKVGIHQAED---AKLLCELD--------GKKR  213 (343)
Q Consensus       156 ~wd~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~---~~~~~~~~--------~~~~  213 (343)
                      ++++.....   +.....+       .....++++|.++.++++ ......+|....   ...+..+.        ....
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998866542   2222221       234789999999888888 555556666541   11112121        2234


Q ss_pred             eEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecc--cc-c-----ccEEEEEEEecCCCCCCCCCCeEEEEEcCC
Q 019326          214 ILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIED--AH-S-----ARVKGIVVLTKNDGGSTAENPYLVASASSD  283 (343)
Q Consensus       214 i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h-~-----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d  283 (343)
                      +..+++++  +.+++.......+..+|.. ++.+..+.-  +. .     ....+|++.+++.         +.++ ++-
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~---------lyIv-sE~  243 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN---------IYIV-SEP  243 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC---------EEEE-ETT
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC---------EEEE-cCC
Confidence            66777774  4577777888899999976 666655541  11 1     2668999998885         4444 666


Q ss_pred             CcEEEEe
Q 019326          284 GVICVWD  290 (343)
Q Consensus       284 g~i~vwd  290 (343)
                      +.++.+.
T Consensus       244 n~~y~f~  250 (255)
T 3qqz_A          244 NRFYRFT  250 (255)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            6555554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.45  E-value=0.00039  Score=57.05  Aligned_cols=218  Identities=10%  Similarity=0.027  Sum_probs=135.7

Q ss_pred             CCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceee-eeeeccccEEEEE
Q 019326           61 DDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLT-SVKVHKKGVNDLA  137 (343)
Q Consensus        61 dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~  137 (343)
                      ...|+..+++...  ....+..  ......+.|.+..+    .++++-...+.|..+++....... .+...-.....++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~--~~~~~~ld~d~~~~----~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGG--LEDAAAVDFVFSHG----LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEE--EEEEEEEEEEGGGT----EEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             cCeEEEEECCCCceEEEEEecC--CCccEEEEEEeCCC----EEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            4678899988763  2222222  24567899998651    455666667899999987653222 2222234567899


Q ss_pred             EecC-CCEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEEe---CCcEEEEEcccceeEEEec-CC
Q 019326          138 VHHS-GKLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMVT---EEKVGIHQAEDAKLLCELD-GK  211 (343)
Q Consensus       138 ~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~-~~  211 (343)
                      +.+. ++++++-...+.|.++++......... .....+..++++|.+..++.+.   .+.|..+++.......... .-
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l  165 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI  165 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence            9874 455556566789999998765433332 2235678899999777666662   4677777775433222222 23


Q ss_pred             cceEEeeecC-CCeEE-EEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          212 KRILCAAPGE-NGVLF-TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       212 ~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      .....+++++ ++.|+ +-+..+.|..+|+.... ...+.........++++..+.          ++++-...+.|..+
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~~----------lywtd~~~~~V~~~  234 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFEDI----------LYWTDWSTHSILAC  234 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEETTE----------EEEEETTTTEEEEE
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeCCE----------EEEEecCCCeEEEE
Confidence            4567888873 55444 44567889999987433 333321344556778775332          66676777889988


Q ss_pred             eccCcc
Q 019326          290 DVRMAI  295 (343)
Q Consensus       290 d~~~~~  295 (343)
                      +..++.
T Consensus       235 ~~~~G~  240 (318)
T 3sov_A          235 NKYTGE  240 (318)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            886653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.43  E-value=0.00032  Score=55.12  Aligned_cols=198  Identities=10%  Similarity=0.095  Sum_probs=131.3

Q ss_pred             EEecCCCCCeEEEEec--Cc-eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           36 FSYPAHLSPITTVAVS--GT-AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        36 ~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      +.+.+-...+..++|+  ++ ++++...++.|...|.. ++.++.+..........|++.+++     .++++.-.++.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-----~~~vs~E~~~~l   93 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-----QFVISDERDYAI   93 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-----EEEEEETTTTEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-----EEEEEECCCCcE
Confidence            4556666789999998  44 55557788999999998 888777743213678899999887     565665567889


Q ss_pred             EEEECCCcce---eeeee------eccccEEEEEEecCCCEEEEEeCCCeEEEEEccC---CceeEEEE--------cCC
Q 019326          113 SIFDADPFVL---LTSVK------VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR---GRRSFYHK--------IGK  172 (343)
Q Consensus       113 ~iwd~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~--------~~~  172 (343)
                      .++++.....   +....      ..+.....++|+|.++.|+++.......+|.+..   ...+....        .-.
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            9998754332   22221      1234568999999997777777655555555541   11112211        123


Q ss_pred             cceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC----------cceEEeeecCCCeEEEEeCCCcEEEEECC
Q 019326          173 EASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK----------KRILCAAPGENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~----------~~i~~~~~~~~~~l~~~~~dg~i~i~d~~  240 (343)
                      ....++++|....+++.  ....+..+|.. ++.+..+...          .....+++.+.+.|+..++.+.++.|...
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence            57889999977666655  66778888865 5566555522          25678889866567777888877777643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.43  E-value=2.3e-05  Score=71.27  Aligned_cols=221  Identities=8%  Similarity=0.015  Sum_probs=114.4

Q ss_pred             EEEec--CceEEEeeC-CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CC-----CeEEEEEC
Q 019326           47 TVAVS--GTAAASGGT-DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-AD-----GFVSIFDA  117 (343)
Q Consensus        47 ~l~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~  117 (343)
                      ++++.  +.+++.|+. +..+.+||..+++-...-..+....-.+++..+++     +.++.|+ .+     ..+.+||.
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-----~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-----RVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-----CEEEECCCCCSSSCCCCEEEEET
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-----eEEEEeCcccCCcccccceEeCC
Confidence            34443  788888874 55799999987754332221201222345566677     6888888 34     57999999


Q ss_pred             CCcceeee--e--eeccccEEEEEEecCCCEEEEEeCC---------CeEEEEEccCCceeEEEEcC----------Ccc
Q 019326          118 DPFVLLTS--V--KVHKKGVNDLAVHHSGKLALTVGRD---------DCLAMVNLVRGRRSFYHKIG----------KEA  174 (343)
Q Consensus       118 ~~~~~~~~--~--~~~~~~v~~i~~~~~~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~----------~~~  174 (343)
                      .+.+-...  .  ......-....+..++..++.++.+         ..+..||..+..........          ...
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            76542211  0  0000000001122344444555443         45778888877643222111          122


Q ss_pred             eEEEEeC-CCCEEEEE-eCC-----------cEEEEEcccceeEEEe--c--CC-cceEEeeecCCCeEEEEeCC-----
Q 019326          175 SLIKFDG-SGEKFFMV-TEE-----------KVGIHQAEDAKLLCEL--D--GK-KRILCAAPGENGVLFTGGED-----  231 (343)
Q Consensus       175 ~~~~~~~-~~~~~~~~-~~~-----------~i~~~d~~~~~~~~~~--~--~~-~~i~~~~~~~~~~l~~~~~d-----  231 (343)
                      .++.+.. +++.++++ .+.           .+.+||..+..-....  .  .. ....++...++.+++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            3444444 55566665 321           5778887776544432  1  11 12223333367788888754     


Q ss_pred             ------CcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcC
Q 019326          232 ------RSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASS  282 (343)
Q Consensus       232 ------g~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  282 (343)
                            ..+.+||..+.+-. .+..  ..........+.+++.         +++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~---------v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGR---------VFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSC---------EEEEECC
T ss_pred             CCCCcccceEEEcCCCCcee-ecCCCCCccccccHhhcCCCcE---------EEecCCC
Confidence                  46899998765422 1210  1111122333445655         8888885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.40  E-value=0.00055  Score=61.59  Aligned_cols=203  Identities=11%  Similarity=0.011  Sum_probs=123.0

Q ss_pred             CCCeEEEEec--CceEE-EeeCCCeEEEEEcCCCee-eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           42 LSPITTVAVS--GTAAA-SGGTDDTIHLYDLSTSSS-LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      ...+..|+|+  ++.|+ +=...+.|..++++.... ...+... -.....|++.+.+.    +++++-...+.|.+.++
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~-~~~P~GlAvD~~~~----~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGE----KLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS-CSCEEEEEEETTTT----EEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC-CCCcCeEEEEecCC----EEEEEeCCCCEEEEEEC
Confidence            3457788887  44444 444567899998875532 2233333 46788999998651    56666667889999999


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eCC
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TEE  192 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~  192 (343)
                      +.......+...-.....|+++|.+..|+....  .+.|...++.......... .-..+..+++++++..|+.+  ..+
T Consensus       114 dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~  193 (619)
T 3s94_A          114 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  193 (619)
T ss_dssp             TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence            764332222233445678999997655555543  4677777765443322222 23567889999988888877  567


Q ss_pred             cEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          193 KVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       193 ~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      .|..+++.......... .......+++..+.++++-...+.|...|..+++....+.
T Consensus       194 ~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  251 (619)
T ss_dssp             CEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred             eEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEe
Confidence            78888886543322222 1122235555455555565667889999988876554443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.39  E-value=0.0019  Score=62.35  Aligned_cols=280  Identities=11%  Similarity=0.075  Sum_probs=153.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCC-cceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCC-------
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQ-KTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTS-------   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-------   72 (343)
                      +++.+..+|.++...+.......  + ...+...+..+ +....-.++++- +++|+.|+..|.=.+|.+...       
T Consensus       288 ~~LL~~~~G~l~~l~l~~d~~~~--~~~~V~~l~i~~~-~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~  364 (1158)
T 3ei3_A          288 RYLLGDMEGRLFMLLLEKEEQMD--GTVTLKDLRVELL-GETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSY  364 (1158)
T ss_dssp             EEEEEETTCEEEEEEEEEEC-------CEEEEEEEEEE-EECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCC
T ss_pred             EEEEEeCCCCEEEEEEEEcCCcc--CceeEEEEEEEEc-CCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccce
Confidence            56777788888877775521000  0 01111112112 223344677776 779999999888777777643       


Q ss_pred             -eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee---CCCeEEEEECCC-cceeeeeee-ccccEEEEEEe---cCCC
Q 019326           73 -SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS---ADGFVSIFDADP-FVLLTSVKV-HKKGVNDLAVH---HSGK  143 (343)
Q Consensus        73 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~---~~~~  143 (343)
                       +.+..+..-  ++|.+++......... ..|++++   .+|.+++..-.- .+....+.. .-..++.+...   ....
T Consensus       365 ~~~~~~~~N~--~PI~D~~v~d~~~~~~-~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~  441 (1158)
T 3ei3_A          365 VVAMETFTNL--GPIVDMCVVDLERQGQ-GQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDD  441 (1158)
T ss_dssp             EEEEEEECCC--CSEEEEEEECTTSSSC-CEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCC
T ss_pred             EEeEeeecCc--CCceeEEEEccCCCCC-CeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCC
Confidence             334555544  8999998865321122 3445443   367888875421 111222211 12355555543   2246


Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeC-CCCEEEEEeCCcEEEEEcccceeEEEecC--CcceEEe
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDG-SGEKFFMVTEEKVGIHQAEDAKLLCELDG--KKRILCA  217 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~i~~~  217 (343)
                      +|+....+.+ .++.+.. +.+......   .....+.... .+..++=.....|++++......+..+..  ...|...
T Consensus       442 yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~A  519 (1158)
T 3ei3_A          442 TLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVA  519 (1158)
T ss_dssp             EEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEE
T ss_pred             EEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEE
Confidence            7777666665 4555432 222222211   1111122111 23344444777888888776666666653  3457777


Q ss_pred             eecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC-CCcEEEEeccCc
Q 019326          218 APGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS-DGVICVWDVRMA  294 (343)
Q Consensus       218 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~  294 (343)
                      +.. +..++.++ ++.+.++.+..++........-...|.++++.+...+   ...+.+++.|.. |++|+|+++.+.
T Consensus       520 s~n-~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~---~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          520 SCN-SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDS---NGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             EEC-SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSS---TTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EeC-CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCC---cccccEEEEEECCCCEEEEEECCCC
Confidence            664 44555554 6788888887654222111123568999998764321   112348999997 999999999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.36  E-value=0.0016  Score=60.12  Aligned_cols=218  Identities=14%  Similarity=0.093  Sum_probs=133.2

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc----ceeeeeeeccccEEEE
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF----VLLTSVKVHKKGVNDL  136 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i  136 (343)
                      ...|+..++........+..  ...+..|+|.+...    .++++-...+.|+.+++...    .....+.........|
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~----~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL  476 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASN----RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  476 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECS--CSSEEEEEEETTTT----EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             ccceeEeeccCCcceeeecC--CCceEEEeecccCC----eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence            35688888876655444443  46788999998651    45556666788999998653    2222233233456789


Q ss_pred             EEecCCC-EEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eC-CcEEEEEcccceeEEEec-C
Q 019326          137 AVHHSGK-LALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TE-EKVGIHQAEDAKLLCELD-G  210 (343)
Q Consensus       137 ~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~-~~i~~~d~~~~~~~~~~~-~  210 (343)
                      ++.+.++ ++++-...+.|.+.++.......... ....+..++++|.+..|+.+  .. +.|...++........+. .
T Consensus       477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~  556 (791)
T 3m0c_C          477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  556 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence            9998764 55555567899999987655443333 23568899999987777666  33 678888876544433333 2


Q ss_pred             CcceEEeeec-CCCeEEEE-eCCCcEEEEECCCCceeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          211 KKRILCAAPG-ENGVLFTG-GEDRSITAWDTNSGKVAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       211 ~~~i~~~~~~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      -.....|+++ .++.|+.+ ...+.|..+++........+.. ..-....+|++..+ .         ++++-...+.|.
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~---------lYwtD~~~~~I~  626 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K---------VFWTDIINEAIF  626 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-E---------EEEEETTTTEEE
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-E---------EEEEECCCCEEE
Confidence            3567788887 34444444 4567899999864433332220 11223456666433 1         555556667777


Q ss_pred             EEeccCc
Q 019326          288 VWDVRMA  294 (343)
Q Consensus       288 vwd~~~~  294 (343)
                      ..+..++
T Consensus       627 ~~dk~tG  633 (791)
T 3m0c_C          627 SANRLTG  633 (791)
T ss_dssp             EEETTTC
T ss_pred             EEeCCCC
Confidence            7776554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=3.2e-05  Score=71.47  Aligned_cols=187  Identities=10%  Similarity=0.025  Sum_probs=110.8

Q ss_pred             CeEEEEEe-CCCCCCCCceEEEe-eCCC----eEEEEECCCc-ceee-eeeeccccEEEEEEecCCCEEEEEeCC-----
Q 019326           85 SVTSLAFY-TPQNLSVPRNLFST-SADG----FVSIFDADPF-VLLT-SVKVHKKGVNDLAVHHSGKLALTVGRD-----  151 (343)
Q Consensus        85 ~v~~l~~~-~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d-----  151 (343)
                      .+...+|+ |++     ++|+.+ +.+|    +|+++|+.++ +.+. .+..   ....++|+||++.|+....+     
T Consensus       175 ~~~~~~~S~PDG-----~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEH-----DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTT-----CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCC-----CEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence            67889999 999     666643 3333    5999999988 6332 1221   23468899999888777654     


Q ss_pred             CeEEEEEccCCce--eEEEE--cCCcceEEEEeCCCCEEEEE-e---CCcEEEEEcccce-eE--EEec--CCcceEEee
Q 019326          152 DCLAMVNLVRGRR--SFYHK--IGKEASLIKFDGSGEKFFMV-T---EEKVGIHQAEDAK-LL--CELD--GKKRILCAA  218 (343)
Q Consensus       152 ~~i~~wd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~i~~~d~~~~~-~~--~~~~--~~~~i~~~~  218 (343)
                      ..|+.+++.+++.  .....  .......+.|+|++++|+.. .   ...+.++|+.++. ..  ..+.  .........
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            3688888877642  22222  22335568899999988877 2   3457788887652 12  3332  234455565


Q ss_pred             ecCCCeEE-EEeCC----CcEEEEECCCCceeEE-ecccccc--cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          219 PGENGVLF-TGGED----RSITAWDTNSGKVAYC-IEDAHSA--RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       219 ~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~-~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      |+.++.|+ ....+    ..|..+|+.++..... +. .|..  .+..+.+.  +.        .++++...|+..++|-
T Consensus       327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~--~~--------~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR--SN--------YLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC--SS--------EEEEEEEETTEEEEEE
T ss_pred             eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE--CC--------EEEEEEEeCCEEEEEE
Confidence            45555444 44333    3677778765322222 22 2333  44555554  22        2677777888655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.002  Score=55.78  Aligned_cols=232  Identities=13%  Similarity=0.082  Sum_probs=134.7

Q ss_pred             eEEEEecC---ceEEEee-CCCeEEEEEcCCCeeeeEeccC--CCCCeEEEEE-------eCCCCCCCCceEEEeeCCC-
Q 019326           45 ITTVAVSG---TAAASGG-TDDTIHLYDLSTSSSLGAIHHH--ESSSVTSLAF-------YTPQNLSVPRNLFSTSADG-  110 (343)
Q Consensus        45 v~~l~~~~---~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~-------~~~~~~~~~~~l~s~~~dg-  110 (343)
                      ...|+|++   ..|+.+. ..+.|++.|++++.....+...  .......|+|       ++++     +.|+++...+ 
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-----~~lyvad~~~~  215 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-----EYMIVAIDYDG  215 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-----CEEEEEECCCT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-----CEEEEEeCCCC
Confidence            45777772   3444444 3467889998877665544332  0235899999       9988     6566665543 


Q ss_pred             ------eEEEEECCC-ccee-----eeeeeccccEEEEEEecC-CCEEEEEeCCCeEEEEEcc-------CCce------
Q 019326          111 ------FVSIFDADP-FVLL-----TSVKVHKKGVNDLAVHHS-GKLALTVGRDDCLAMVNLV-------RGRR------  164 (343)
Q Consensus       111 ------~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~i~~wd~~-------~~~~------  164 (343)
                            .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  266665433 2221     222222 23457888994 5556666778899999997       4543      


Q ss_pred             -----e-EEEEcC--CcceEEEEeCCCCEEEEE--eCCcEEEEEccc--ceeE--EEecC----C------------cce
Q 019326          165 -----S-FYHKIG--KEASLIKFDGSGEKFFMV--TEEKVGIHQAED--AKLL--CELDG----K------------KRI  214 (343)
Q Consensus       165 -----~-~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~--~~~~--~~~~~----~------------~~i  214 (343)
                           . .....+  .....++++|+++.++.+  ..+.|+.++...  +...  ..+..    .            ...
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence                 1 112222  446789999999977666  677888866543  2210  11110    0            112


Q ss_pred             E-Eeeec--------CCCeEEEEeCCCcEEEEECCCCceeEEecccc------------------------cccEEEEEE
Q 019326          215 L-CAAPG--------ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAH------------------------SARVKGIVV  261 (343)
Q Consensus       215 ~-~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h------------------------~~~v~~~~~  261 (343)
                      . .++..        .++++++-....+|+.++ .++. +.++- +.                        -....+|++
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Tia-G~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav  451 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYA-GRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY  451 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEE-ESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEe-cccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence            2 33332        234555555677899888 4453 33442 11                        123567777


Q ss_pred             Eec-CCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          262 LTK-NDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       262 ~~~-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .++ +.         ++++=....+|+.++++..
T Consensus       452 d~~~g~---------lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          452 DDVKEM---------FYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             ETTTTE---------EEEEETTTTEEEEEEECCC
T ss_pred             ECCCCE---------EEEEeCCCCEEEEEECCCC
Confidence            775 43         5555566678888888754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.23  E-value=0.00032  Score=64.87  Aligned_cols=187  Identities=10%  Similarity=0.017  Sum_probs=106.8

Q ss_pred             CeEEEEec---CceEEEee-CC----CeEEEEEcCCC-eeeeE-eccCCCCCeEEEEEeCCCCCCCCceEEEeeCC----
Q 019326           44 PITTVAVS---GTAAASGG-TD----DTIHLYDLSTS-SSLGA-IHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD----  109 (343)
Q Consensus        44 ~v~~l~~~---~~~l~s~~-~d----g~i~iwd~~~~-~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----  109 (343)
                      .+...+|+   |++||.+. .+    ..|+++|+.++ +.+.. +.    .....+.|+|++     +.|+....+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg-----~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDH-----TSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSST-----TEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCC-----CEEEEEEECCCCC
Confidence            56677776   55666432 22    35999999988 63321 11    123468899998     566666654    


Q ss_pred             -CeEEEEECCCccee--eeee-eccccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCc-ee--EEEE--cCCcceEE
Q 019326          110 -GFVSIFDADPFVLL--TSVK-VHKKGVNDLAVHHSGKLALTVGR---DDCLAMVNLVRGR-RS--FYHK--IGKEASLI  177 (343)
Q Consensus       110 -g~i~iwd~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~l~~~~~---d~~i~~wd~~~~~-~~--~~~~--~~~~~~~~  177 (343)
                       ..|+++++.+++..  ..+. ........+.|+|++++|+..+.   ...|.++|+.++. ..  ....  .......+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence             36888888775422  2222 22234667899999998887653   3468888988752 11  1111  12233334


Q ss_pred             EEeCCCCEEEEE-eC--C--cEEEEEcccc-eeEE-EecCC--cceEEeeecCCCeEEEEeCCCc--EEEEEC
Q 019326          178 KFDGSGEKFFMV-TE--E--KVGIHQAEDA-KLLC-ELDGK--KRILCAAPGENGVLFTGGEDRS--ITAWDT  239 (343)
Q Consensus       178 ~~~~~~~~~~~~-~~--~--~i~~~d~~~~-~~~~-~~~~~--~~i~~~~~~~~~~l~~~~~dg~--i~i~d~  239 (343)
                      .|+..+.+++.. .+  +  .|..+++.+. .... .+.+.  ..+..+.+..+.++++...++.  |.++|+
T Consensus       326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            444433344444 32  2  4666676542 2222 33333  2456667655556677777776  555665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.23  E-value=0.0027  Score=57.17  Aligned_cols=219  Identities=14%  Similarity=0.030  Sum_probs=138.5

Q ss_pred             CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           60 TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        60 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      ....|+..++++......+....-..+..|+|.+...    ..+++-..++.|..++++.......+.........+++.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~----~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN----RIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT----EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC----EEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence            4567999999876543333221135688999998762    455566668899999987654333333222456789998


Q ss_pred             cCCC-EEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEEe---CCcEEEEEcccceeEEEecCCcce
Q 019326          140 HSGK-LALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMVT---EEKVGIHQAEDAKLLCELDGKKRI  214 (343)
Q Consensus       140 ~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~i  214 (343)
                      +.+. +.++-...+.|.+.++......... ..-..+..++++|....++.+.   .+.|...++...........-...
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P  168 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRA  168 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSE
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCc
Confidence            7654 4455556788999998765433322 2235678899999766666662   467777777655443334444567


Q ss_pred             EEeeecC-CCeE-EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          215 LCAAPGE-NGVL-FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       215 ~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      ..++++. ++.| ++-...+.|..+|+..... ..+. .......+|++..+ .         ++++-...+.|...|..
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~~-~---------ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQD-Y---------IYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEETT-E---------EEEEETTTTEEEEEETT
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEECC-E---------EEEecCCCCEEEEEECC
Confidence            7888873 4544 4445678899999875433 3333 33345567877653 2         55565567888888866


Q ss_pred             Cc
Q 019326          293 MA  294 (343)
Q Consensus       293 ~~  294 (343)
                      ++
T Consensus       237 tg  238 (628)
T 4a0p_A          237 SG  238 (628)
T ss_dssp             TC
T ss_pred             CC
Confidence            55

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.23  E-value=0.0013  Score=53.38  Aligned_cols=200  Identities=13%  Similarity=0.019  Sum_probs=125.0

Q ss_pred             ecCCCCCeEEEEec--CceEEEee-CCCeEEEEEcCCCeeeeE-ecc----C-CCCCeEEEEE---eCCCCCCCCceEEE
Q 019326           38 YPAHLSPITTVAVS--GTAAASGG-TDDTIHLYDLSTSSSLGA-IHH----H-ESSSVTSLAF---YTPQNLSVPRNLFS  105 (343)
Q Consensus        38 ~~~h~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~-~~~~v~~l~~---~~~~~~~~~~~l~s  105 (343)
                      ++.....-.+++|+  ...|+.++ ..+.|..|+...+..... +..    . ....+..|.|   .|.+     +++++
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-----rL~vv   82 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-----RLFAV   82 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-----EEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-----cEEEE
Confidence            34445556678897  45555555 789999999986543322 222    1 0114678999   5776     56664


Q ss_pred             eeC-------------CCeEEEEECC---Ccceeeeeeec-------------cccEEEEEEecCCCEEEEEeCC-CeEE
Q 019326          106 TSA-------------DGFVSIFDAD---PFVLLTSVKVH-------------KKGVNDLAVHHSGKLALTVGRD-DCLA  155 (343)
Q Consensus       106 ~~~-------------dg~i~iwd~~---~~~~~~~~~~~-------------~~~v~~i~~~~~~~~l~~~~~d-~~i~  155 (343)
                      ...             +..|..||+.   +++.+......             ......++..++|+..++++.. +.|.
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~  162 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA  162 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence            432             6789999998   77776655421             1258899999999999999888 8887


Q ss_pred             EEEccCCceeEEEEcC------CcceEEEEeCCCCEEEEE-eCCcEEEEEccccee--EEEe--c---CCcceEEe-ee-
Q 019326          156 MVNLVRGRRSFYHKIG------KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKL--LCEL--D---GKKRILCA-AP-  219 (343)
Q Consensus       156 ~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~--~~~~--~---~~~~i~~~-~~-  219 (343)
                      ..+.............      ...+.++++|++..|++. ..+.+..+|+.....  +..-  .   .-.....+ .. 
T Consensus       163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~  242 (334)
T 2p9w_A          163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVP  242 (334)
T ss_dssp             EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEE
T ss_pred             EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccc
Confidence            7776544322111111      125689999999999999 889999999875332  2111  0   01112222 22 


Q ss_pred             cCCCe-EEEEeCCCcEEEEECCCC
Q 019326          220 GENGV-LFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       220 ~~~~~-l~~~~~dg~i~i~d~~~~  242 (343)
                      .+++. +++....+.+.+.+....
T Consensus       243 ~~G~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          243 VGNESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             ETTEEEEEEEETTEEEEEECSSTT
T ss_pred             cCCEEEEEEcCCCCEEEEECCCCc
Confidence            25665 555555666666665443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0021  Score=55.10  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             CCCCeEEEEec--CceEEEeeCC-C----eEEEEEcCCCeee--eEeccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCC
Q 019326           41 HLSPITTVAVS--GTAAASGGTD-D----TIHLYDLSTSSSL--GAIHHHESSSVTSLAFYT-PQNLSVPRNLFSTSADG  110 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~d-g----~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg  110 (343)
                      .......|+|+  ++.|+.+... +    .+...+. .+...  ..+..  ......+++.| ++     .++++-..++
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~--~~~p~giavdp~~g-----~lyv~d~~~~  248 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK--GQNCNGAETHPING-----ELYFNSWNAG  248 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE--CSSCCCEEECTTTC-----CEEEEETTTT
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc--CCCceEEEEeCCCC-----EEEEEECCCC
Confidence            34567889998  6756665542 1    2333443 33222  22322  24456788999 55     4555655678


Q ss_pred             eEEEEECCCcceeeeeee-ccccEEEEEEecCCCE-EEEEeCCCeEEEEEccC
Q 019326          111 FVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGKL-ALTVGRDDCLAMVNLVR  161 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~-l~~~~~d~~i~~wd~~~  161 (343)
                      .|..++..++........ .......++|+|++++ +++-...+.|..++...
T Consensus       249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            999999987554222221 1234678999999995 45555678899988763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.13  E-value=0.0011  Score=56.92  Aligned_cols=156  Identities=12%  Similarity=0.156  Sum_probs=87.4

Q ss_pred             CCCCeEEEEec--CceEEEeeCCC-----eEEEEEcCCCee-eeEeccCCCCCeEEEEEeC-CCCCCCCceEEEeeCCCe
Q 019326           41 HLSPITTVAVS--GTAAASGGTDD-----TIHLYDLSTSSS-LGAIHHHESSSVTSLAFYT-PQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg-----~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~dg~  111 (343)
                      .......++++  ++ |+.+...+     .+...+...+.. ...+. . -.....+++.| ++     .++++-..++.
T Consensus       180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~-~~~P~giavd~~~G-----~lyv~d~~~~~  251 (433)
T 4hw6_A          180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-N-ARGAKTCAVHPQNG-----KIYYTRYHHAM  251 (433)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-E-CSSBCCCEECTTTC-----CEEECBTTCSE
T ss_pred             CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-c-cCCCCEEEEeCCCC-----eEEEEECCCCE
Confidence            44568889998  66 55444321     133333322211 01121 2 24456788888 55     45555556788


Q ss_pred             EEEEECCCcceeeeeeec--cccEEEEEEecCCCEEE-EEeCCCeEEEEEccC--Cce---eEEEEc-------------
Q 019326          112 VSIFDADPFVLLTSVKVH--KKGVNDLAVHHSGKLAL-TVGRDDCLAMVNLVR--GRR---SFYHKI-------------  170 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~-~~~~d~~i~~wd~~~--~~~---~~~~~~-------------  170 (343)
                      |+.+|..++.....+...  ...-..++|+|+++.|+ +-...+.|..+++..  +..   ......             
T Consensus       252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            999999876653333211  12234699999998554 445578899988652  221   111111             


Q ss_pred             --CCcceEEEE---------eCCCCEEEEE-eCCcEEEEEcccceeE
Q 019326          171 --GKEASLIKF---------DGSGEKFFMV-TEEKVGIHQAEDAKLL  205 (343)
Q Consensus       171 --~~~~~~~~~---------~~~~~~~~~~-~~~~i~~~d~~~~~~~  205 (343)
                        -..+..+++         .+++.++++- ..+.|+.++. ++...
T Consensus       332 a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             eEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence              023556888         6666655555 6778888885 45433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.12  E-value=0.0076  Score=58.18  Aligned_cols=192  Identities=11%  Similarity=0.091  Sum_probs=121.7

Q ss_pred             eEEEEECCCcceeeeeeecc-ccEEEEE---EecC-CCEEEEEe----------CCCeEEEEEccCCce--eEEEEcCCc
Q 019326          111 FVSIFDADPFVLLTSVKVHK-KGVNDLA---VHHS-GKLALTVG----------RDDCLAMVNLVRGRR--SFYHKIGKE  173 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~-~~v~~i~---~~~~-~~~l~~~~----------~d~~i~~wd~~~~~~--~~~~~~~~~  173 (343)
                      .|++.|..+++.+..+.... ..+.+++   |..+ ..++++|.          ..|.|.+|++..++.  +.....++.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            47778877777766665332 3445554   3322 36788776          358899999975432  334445677


Q ss_pred             ceEEEEeCCCCEEEEEeCCcEEEEEcccceeEE-EecCCcceE--EeeecCCCeEEEEeCCCcEEEEE--CCCCceeEEe
Q 019326          174 ASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLC-ELDGKKRIL--CAAPGENGVLFTGGEDRSITAWD--TNSGKVAYCI  248 (343)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~i~--~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~  248 (343)
                      +.+++--.  .+++++....+++|++...+.++ .......+.  .+.. .+++++.|+.-..|.++.  ...++....-
T Consensus       888 v~al~~~~--g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          888 VYSMVEFN--GKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             EEEEEEET--TEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred             CEEEeeeC--CEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence            77766442  37888888999999998765444 111111122  3333 467888888877777654  4444433333


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc-----cCCCcccccccccceeEEE
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK-----EKPLPLAEAKTNSRLTCLA  315 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~i~~~~  315 (343)
                      .+.+...++++.+..++          .++.+..+|+|.+........     .+......++.+..|+++.
T Consensus       965 ~D~~~~~vta~~~ld~~----------t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~ 1026 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDDD----------NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFC 1026 (1158)
T ss_dssp             ECCSCBCEEEEEEEETT----------EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEE
T ss_pred             eecccccEEEEEEEccC----------cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEE
Confidence            33567788999888765          788899999999998765311     1222345677788888875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.12  E-value=0.0058  Score=56.64  Aligned_cols=228  Identities=9%  Similarity=0.076  Sum_probs=135.0

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      ...|++|.-+ ..+|..|..+| +..||-.+-+............|.++....++      .|..|+.+| +..||..+.
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g------~lWigT~~G-l~~yd~~~~   92 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT------YLYMGTDNG-ILVYNYRAD   92 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT------EEEEEETTE-EEEEETTTT
T ss_pred             cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC------cEEEEeCCC-eEEEeCCCC
Confidence            5679999988 67888888888 66677433221111111113568888877766      777887765 788998765


Q ss_pred             ceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE----c-CCcceEEEEeCCCCEEEEEeCCcEE
Q 019326          121 VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK----I-GKEASLIKFDGSGEKFFMVTEEKVG  195 (343)
Q Consensus       121 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~i~  195 (343)
                      +...........|.++.. .++ .|..++.+ .+..+|..+++......    . ...+.++....++...+.. .+.+.
T Consensus        93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~Gl~  168 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-YNGLC  168 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-TTEEE
T ss_pred             EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-CCCHh
Confidence            432211112235776654 344 56666665 68889987665432211    1 2346677777777766644 45677


Q ss_pred             EEEcccceeEEEe-cC-----CcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          196 IHQAEDAKLLCEL-DG-----KKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       196 ~~d~~~~~~~~~~-~~-----~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      .++..+.+..... ..     ...|.++.... ++.|..|+. +-+..+|..+++.. .+.......|.++....++.  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~~l~~~~i~~i~~d~~g~--  244 (758)
T 3ott_A          169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK-QTEAFHNNSIKSLALDGNGD--  244 (758)
T ss_dssp             EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE-EEEEEEEEEEEEEEECTTCC--
T ss_pred             hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE-eccCCCCCeEEEEEEcCCCC--
Confidence            8887765533211 11     12377777753 456666764 45888998766432 22212344677777665553  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          269 STAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                              |..|+.+ -+.+++..+.
T Consensus       245 --------lWigT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          245 --------LLAGTDN-GLYVYHNDTT  261 (758)
T ss_dssp             --------EEEEETT-EEEEECCTTS
T ss_pred             --------EEEEeCC-ceeEEecCCC
Confidence                    4455544 4778887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.08  E-value=0.0067  Score=56.19  Aligned_cols=256  Identities=10%  Similarity=0.082  Sum_probs=144.3

Q ss_pred             CCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEec----cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           43 SPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIH----HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        43 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      ..|.++......|..++.+ -+..+|..+++.. .+.    ......|.++...+++      .|..|+.+ -+..++..
T Consensus       103 ~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g------~lWigt~~-Gl~~~~~~  173 (758)
T 3ott_A          103 TDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN------QIYVGTYN-GLCRYIPS  173 (758)
T ss_dssp             SCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC------CEEEEETT-EEEEEETT
T ss_pred             ceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC------CEEEEeCC-CHhhCccC
Confidence            3577776555567777766 5888898766543 221    1113568888887776      56666655 47788876


Q ss_pred             Ccceeeeeeec------cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEEeC
Q 019326          119 PFVLLTSVKVH------KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMVTE  191 (343)
Q Consensus       119 ~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  191 (343)
                      +.+.. .+...      ...|.++...+++..|..++. +.+..+|..+++....... ...+.++....++...+.. +
T Consensus       174 ~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~  250 (758)
T 3ott_A          174 NGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D  250 (758)
T ss_dssp             TTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T
T ss_pred             CCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C
Confidence            65432 22111      224888888877776666664 5688899877654322222 2346777777777776655 5


Q ss_pred             CcEEEEEcccceeEEEec--------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec------ccccccEE
Q 019326          192 EKVGIHQAEDAKLLCELD--------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE------DAHSARVK  257 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~--------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~h~~~v~  257 (343)
                      +.+.+++..+.+......        ....|.++.....+.|..|+..| +.++....  ....+.      ......|.
T Consensus       251 ~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~  327 (758)
T 3ott_A          251 NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFY  327 (758)
T ss_dssp             TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEE
T ss_pred             CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEE
Confidence            568888877654332211        12358888876666788888777 55553322  222221      01134577


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccc-----ccccccceeEEEcCCCCceec
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLA-----EAKTNSRLTCLAGSSTKSFKR  324 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~~~  324 (343)
                      ++....++.          |..|+.+| +..++..++.........     .......|.++.-..++.+-+
T Consensus       328 ~i~~D~~g~----------lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi  388 (758)
T 3ott_A          328 SLFRDSKGF----------YWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI  388 (758)
T ss_dssp             EEEECTTCC----------EEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE
T ss_pred             EEEEcCCCC----------EEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE
Confidence            776655553          55555555 556665542111100000     001123477777766665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.08  E-value=0.0016  Score=52.91  Aligned_cols=185  Identities=11%  Similarity=0.109  Sum_probs=98.3

Q ss_pred             EEEecCceEEEeeCC-----CeEEEEEcCCCe---e--eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----Ce
Q 019326           47 TVAVSGTAAASGGTD-----DTIHLYDLSTSS---S--LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GF  111 (343)
Q Consensus        47 ~l~~~~~~l~s~~~d-----g~i~iwd~~~~~---~--~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~  111 (343)
                      ++...+..++.|+.+     ..+.+||..+.+   -  +..+... ...- ++... ++     +.++.|+.+     ..
T Consensus        58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~-r~~~-~~~~~-~~-----~lyv~GG~~~~~~~~~  129 (301)
T 2vpj_A           58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-RGLA-GATTL-GD-----MIYVSGGFDGSRRHTS  129 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC-CBSC-EEEEE-TT-----EEEEECCBCSSCBCCE
T ss_pred             EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC-ccce-eEEEE-CC-----EEEEEcccCCCcccce
Confidence            344457777777765     458899988765   2  2222222 1222 22222 44     577777654     36


Q ss_pred             EEEEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCceeEEEEcCCc--ceEEEEeCC
Q 019326          112 VSIFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGS  182 (343)
Q Consensus       112 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~  182 (343)
                      +.+||+.+.+  .+..+.........+.  .+++.++.|+.+     ..+..||+.+.+-......+.+  -..+... +
T Consensus       130 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~  206 (301)
T 2vpj_A          130 MERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-N  206 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T
T ss_pred             EEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-C
Confidence            8889987644  2222221111112222  256677777654     4588999888765443333322  1222222 4


Q ss_pred             CCEEEEE-e-----CCcEEEEEcccceeEEEec--CC-cceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          183 GEKFFMV-T-----EEKVGIHQAEDAKLLCELD--GK-KRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       183 ~~~~~~~-~-----~~~i~~~d~~~~~~~~~~~--~~-~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      +..++.+ .     ...+.+||+.+.+-...-.  .. ....++.. ++.+++.|+.+     ..+.+||+.+.+
T Consensus       207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            5555555 3     2568899998765433222  11 12222223 66677777655     357888887654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.05  E-value=3.1e-05  Score=70.78  Aligned_cols=217  Identities=12%  Similarity=0.073  Sum_probs=126.5

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe-eCCCeEEEEECCC----cceeeeeeeccccEEE
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST-SADGFVSIFDADP----FVLLTSVKVHKKGVND  135 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~  135 (343)
                      .+.|+..++.+.+....+...  ..+..|+|.+..     ..|+.+ ...+.|+.+++.+    ......+.........
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~--~~p~gla~d~~~-----~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL--RNVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC--TTCCCCEEETTT-----TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             ccceEEEeCCCCcceeeeccC--cceEEEcccccc-----CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            356888888776554444333  456789999866     345444 4567899999875    2222222211223456


Q ss_pred             EEEecCC-CEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eC-CcEEEEEcccceeEEEec-
Q 019326          136 LAVHHSG-KLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TE-EKVGIHQAEDAKLLCELD-  209 (343)
Q Consensus       136 i~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~-~~i~~~d~~~~~~~~~~~-  209 (343)
                      |++.+.+ +++++-...+.|.++++........... ...+..++++|.+..|+.+  .. +.|..+++........+. 
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~  537 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  537 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence            8888544 4555555678899999876554333322 2456788999976666655  22 677777765432221111 


Q ss_pred             CCcceEEeeec-CC-CeEEEEeCCCcEEEEECCCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCc
Q 019326          210 GKKRILCAAPG-EN-GVLFTGGEDRSITAWDTNSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGV  285 (343)
Q Consensus       210 ~~~~i~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  285 (343)
                      .-.....++++ .+ .++++-+..+.|..+++.... ...+..  .......+|++..+.          ++++....+.
T Consensus       538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~~----------lywtd~~~~~  606 (699)
T 1n7d_A          538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDK----------VFWTDIINEA  606 (699)
T ss_dssp             SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETTE----------EEEECSTTTC
T ss_pred             CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECCE----------EEEEeCCCCe
Confidence            22345567776 33 455555567889999986433 333321  112234455664432          6667777789


Q ss_pred             EEEEeccCcc
Q 019326          286 ICVWDVRMAI  295 (343)
Q Consensus       286 i~vwd~~~~~  295 (343)
                      |..++..++.
T Consensus       607 V~~~d~~~G~  616 (699)
T 1n7d_A          607 IFSANRLTGS  616 (699)
T ss_dssp             EEEEETTTEE
T ss_pred             EEEEEccCCC
Confidence            9999987664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.01  E-value=0.0033  Score=51.10  Aligned_cols=219  Identities=11%  Similarity=0.045  Sum_probs=113.9

Q ss_pred             eEEecc--CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCC----CeEEEEEcCCCeeee
Q 019326            3 LIAGSY--EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTD----DTIHLYDLSTSSSLG   76 (343)
Q Consensus         3 l~~g~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d----g~i~iwd~~~~~~~~   76 (343)
                      ++.|+.  ...+.+||....          +...+..+......-.++.+.+..++.|+.+    ..+.+||..+.+-..
T Consensus        15 ~~~GG~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           15 IALFGGSQPQSCRYFNPKDY----------SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             EEEECCSSTTSEEEEETTTT----------EEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCceEEEecCCCC----------CEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence            445554  356778887651          1222222222223333444557777777755    678899998875433


Q ss_pred             E--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------CeEEEEECCCcce--eeeeeeccccEEEEEEecCCCEEE
Q 019326           77 A--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVSIFDADPFVL--LTSVKVHKKGVNDLAVHHSGKLAL  146 (343)
Q Consensus        77 ~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~  146 (343)
                      .  +... ...- +++.. ++     +.++.|+.+      ..+.+||..+.+-  +..+.........+.  -+++.++
T Consensus        85 ~~~~p~~-r~~~-~~~~~-~~-----~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv  154 (306)
T 3ii7_A           85 KLGPPTP-RDSL-AACAA-EG-----KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYV  154 (306)
T ss_dssp             EECCSSC-CBSC-EEEEE-TT-----EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred             CCCCCcc-ccce-eEEEE-CC-----EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEE
Confidence            2  2211 1222 22222 44     577777765      4688999876532  222211111112222  2556666


Q ss_pred             EEeC---------CCeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-e-----CCcEEEEEcccceeEEE--
Q 019326          147 TVGR---------DDCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-T-----EEKVGIHQAEDAKLLCE--  207 (343)
Q Consensus       147 ~~~~---------d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-----~~~i~~~d~~~~~~~~~--  207 (343)
                      .|+.         -..+.+||+.+.+-......+..  -..+... +++.++.+ .     -..+.+||+.+.+-...  
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP  233 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC
Confidence            6653         34588999988764443333322  1223322 45555555 2     24688899887653322  


Q ss_pred             ecCC-cceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          208 LDGK-KRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       208 ~~~~-~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      +... ....++.+ ++.+++.|+.+     ..+.+||+.+.+
T Consensus       234 ~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          234 MPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            2211 12223333 66777777754     468889987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=0.0049  Score=51.29  Aligned_cols=222  Identities=13%  Similarity=0.101  Sum_probs=119.7

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce--eeeee---eccccEEEEEEecC---CCEEEEEeC-C---
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL--LTSVK---VHKKGVNDLAVHHS---GKLALTVGR-D---  151 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~i~~~~~---~~~l~~~~~-d---  151 (343)
                      .....++|.|++     + ++.+..+|.|++++  .++.  +..+.   ........|+++|+   +..|+++.. .   
T Consensus        31 ~~P~~ia~~pdG-----~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           31 EVPWALAFLPDG-----G-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             SCEEEEEECTTS-----C-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             CCceEEEEcCCC-----e-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            457799999998     4 55566779999998  3332  22111   12346789999998   445544433 2   


Q ss_pred             --CeEEEEEccCCce----eEEEEcC------CcceEEEEeCCCCEEEEEeC--------------CcEEEEEcccc---
Q 019326          152 --DCLAMVNLVRGRR----SFYHKIG------KEASLIKFDGSGEKFFMVTE--------------EKVGIHQAEDA---  202 (343)
Q Consensus       152 --~~i~~wd~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------------~~i~~~d~~~~---  202 (343)
                        +.|..++...+..    ......+      +....++|.|+|.++++..+              +.|.-++....   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence              6788888764421    1111122      34567999999976665432              34555544320   


Q ss_pred             -----------eeEEEecCCcceEEeeecC-CCeEEEEeCC-Cc--------EEEEECCC----------------Ccee
Q 019326          203 -----------KLLCELDGKKRILCAAPGE-NGVLFTGGED-RS--------ITAWDTNS----------------GKVA  245 (343)
Q Consensus       203 -----------~~~~~~~~~~~i~~~~~~~-~~~l~~~~~d-g~--------i~i~d~~~----------------~~~~  245 (343)
                                 ..+... .......+++++ .+.|+++... ..        |.+.....                ..++
T Consensus       183 ~npf~~~~~~~~~i~a~-G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSL-GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTTTCTTSCTTEEEE-CCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCcccCCCCCCccEEEE-cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                       001111 112345567765 4444444322 22        33322111                0123


Q ss_pred             EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc----cCCCcccccccccceeEEEcCCCCc
Q 019326          246 YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK----EKPLPLAEAKTNSRLTCLAGSSTKS  321 (343)
Q Consensus       246 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~  321 (343)
                      ..+.  +......+++ ..+.         ++++.-..+.|...+++....    .....+.  ....++..+++.||+.
T Consensus       262 ~~~~--~~~ap~G~~~-~~G~---------l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~  327 (352)
T 2ism_A          262 YFWP--QGFPPGNLAF-FRGD---------LYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGA  327 (352)
T ss_dssp             EECT--TCCCEEEEEE-ETTE---------EEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSC
T ss_pred             EecC--CCCCCcceEE-ECCE---------EEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCc
Confidence            3332  2334567777 3332         666666677788887765421    0011111  2235789999999998


Q ss_pred             eeccccC
Q 019326          322 FKRPQIG  328 (343)
Q Consensus       322 ~~~~~~~  328 (343)
                      +.+....
T Consensus       328 lyv~~~~  334 (352)
T 2ism_A          328 LYVTTSN  334 (352)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            8776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.00042  Score=56.84  Aligned_cols=190  Identities=12%  Similarity=0.105  Sum_probs=109.3

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe-eCCCeEEEEECCCcceeeeeeec-
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST-SADGFVSIFDADPFVLLTSVKVH-  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-  129 (343)
                      ++.++.++.||.|.-.|.++|+..+.+......++....- +.. ...+..++.. +.||.|..++..++.....+... 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~~-~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PSR-LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SCT-TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Ccc-ccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            5688999999999999999999999987541123322110 110 0001233333 68999999999887655444321 


Q ss_pred             ---cccEEE---EEE-e----cCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcce--------EEEEe-----CCCCE
Q 019326          130 ---KKGVND---LAV-H----HSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEAS--------LIKFD-----GSGEK  185 (343)
Q Consensus       130 ---~~~v~~---i~~-~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~  185 (343)
                         ..++..   ... .    ..+..+++++.+|.+...|+++|+.+.......+..        |....     ..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence               112221   000 0    135678999999999999999999998887654321        11110     12344


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEec-----CC---cceE-Eeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELD-----GK---KRIL-CAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~-----~~---~~i~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      ++.+ .+..+.+.+ ++++ ...+.     ..   .++. ....+ ++.+ +.++.||.|..+|..+|+.+.
T Consensus       168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            5555 566666666 4443 22221     00   0000 00001 2344 567889999999999998876

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.0057  Score=49.66  Aligned_cols=155  Identities=10%  Similarity=0.149  Sum_probs=103.2

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEee-CCCeEEEEECCCcceeee-eee----c--cccEEEEEE---ecCCCEEEEEe--
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVSIFDADPFVLLTS-VKV----H--KKGVNDLAV---HHSGKLALTVG--  149 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~--~~~v~~i~~---~~~~~~l~~~~--  149 (343)
                      ...-.+.+|.+..     ..|+.++ ..++|..||...+..... +..    .  ...+..|.|   .|+++++++..  
T Consensus        12 ~~yPE~~~wd~~~-----g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           12 NLTPEDTIYDRTR-----QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             TCCCSCEEEETTT-----TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             ccCCcCccCcCCC-----CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            4445578898765     3555555 799999999975543322 221    0  114689999   68877776543  


Q ss_pred             -----------CCCeEEEEEcc---CCceeEEEEcC--------------CcceEEEEeCCCCEEEEE-eC-CcEEEEEc
Q 019326          150 -----------RDDCLAMVNLV---RGRRSFYHKIG--------------KEASLIKFDGSGEKFFMV-TE-EKVGIHQA  199 (343)
Q Consensus       150 -----------~d~~i~~wd~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~-~~i~~~d~  199 (343)
                                 .+..|..+|+.   +++.+....+.              .....++..++|+..++. .. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26789999999   88877766643              136779999999999877 66 77777776


Q ss_pred             ccceeEEEe-cC-----CcceEEeeec-CCCeEEEEeCCCcEEEEECCCC
Q 019326          200 EDAKLLCEL-DG-----KKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       200 ~~~~~~~~~-~~-----~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  242 (343)
                      .......-. ..     ....+.+++. +++.|++....|.|..+|+.+.
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            543222111 11     1225577887 4667777766999999998854

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.91  E-value=0.0046  Score=50.10  Aligned_cols=221  Identities=15%  Similarity=0.121  Sum_probs=113.6

Q ss_pred             CceEEEee-CC-----CeEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEECC
Q 019326           52 GTAAASGG-TD-----DTIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFDAD  118 (343)
Q Consensus        52 ~~~l~s~~-~d-----g~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~  118 (343)
                      +..++.|+ .+     ..+.+||..+.+-...  +... ... .++... ++     ..++.|+.+     ..+.+||+.
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-RRY-VASVSL-HD-----RIYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC-CBS-CEEEEE-TT-----EEEEECCBCSSCBCCCEEEEETT
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh-hcc-ccEEEE-CC-----EEEEEcCCCCCccCceEEEEECC
Confidence            45556666 32     3688999887653321  2211 111 222222 34     577777765     468999987


Q ss_pred             Ccc-----eeeeeeeccccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEE
Q 019326          119 PFV-----LLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKF  186 (343)
Q Consensus       119 ~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  186 (343)
                      +.+     .+..+.........+.+  +++.++.|+.+     ..+.+||+.+.+-......+..  -..++.. +++.+
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iy  163 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIY  163 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEE
T ss_pred             CCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEE
Confidence            644     22222211112222222  56677777643     4688999888765444433322  1222222 55555


Q ss_pred             EEE-e-----CCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCceeEEeccc-c
Q 019326          187 FMV-T-----EEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGKVAYCIEDA-H  252 (343)
Q Consensus       187 ~~~-~-----~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-h  252 (343)
                      +.+ .     -..+.+||+.+.+-...-.  ....-.++...++.+++.|+.+     ..+.+||+.+.+-. .+... .
T Consensus       164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~  242 (301)
T 2vpj_A          164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTT  242 (301)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSS
T ss_pred             EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCC
Confidence            555 2     2568889988765433322  1111112223366777777764     46899999876422 22201 1


Q ss_pred             cccEEEEEEEecCCCCCCCCCCeEEEEEcCC-----CcEEEEeccCc
Q 019326          253 SARVKGIVVLTKNDGGSTAENPYLVASASSD-----GVICVWDVRMA  294 (343)
Q Consensus       253 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  294 (343)
                      ...-.+++.. ++.         +++.|+.+     ..+.+||+++.
T Consensus       243 ~r~~~~~~~~-~~~---------i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          243 PRCYVGATVL-RGR---------LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CCBSCEEEEE-TTE---------EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             cccceeEEEE-CCE---------EEEEcCcCCCcccccEEEEcCCCC
Confidence            1111122222 333         67777765     35778888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.85  E-value=0.0075  Score=48.87  Aligned_cols=185  Identities=15%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             EEecCceEEEeeCC-----CeEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-----eEEEE
Q 019326           48 VAVSGTAAASGGTD-----DTIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-----FVSIF  115 (343)
Q Consensus        48 l~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iw  115 (343)
                      +.+.+..++.|+.+     ..+.+||..+.+-...  +... ... .+++.. ++     ..++.|+.++     .+.+|
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~iyv~GG~~~~~~~~~~~~~  129 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR-RST-LGAAVL-NG-----LLYAVGGFDGSTGLSSVEAY  129 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBS-CEEEEE-TT-----EEEEEEEECSSCEEEEEEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc-ccc-eEEEEE-CC-----EEEEEcCCCCCccCceEEEE
Confidence            34457777777754     3588899887653322  2211 112 222222 34     5777777653     57788


Q ss_pred             ECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC-------CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCC
Q 019326          116 DADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD-------DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGE  184 (343)
Q Consensus       116 d~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~  184 (343)
                      |+.+.+  .+..+.........+.  -+++.++.|+.+       ..+..||+.+.+-......+..  -..+... ++.
T Consensus       130 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~  206 (302)
T 2xn4_A          130 NIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNL  206 (302)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE
T ss_pred             eCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCE
Confidence            886643  2222221111112222  255666666542       4588999988764443333221  1222222 455


Q ss_pred             EEEEE-e-----CCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCC-----cEEEEECCCCc
Q 019326          185 KFFMV-T-----EEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDR-----SITAWDTNSGK  243 (343)
Q Consensus       185 ~~~~~-~-----~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  243 (343)
                      .++.+ .     ...+.+||+.+.+-...-.  ....-.+++..++.+++.|+.++     .+.+||+.+.+
T Consensus       207 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            55555 3     2468899988765433222  11111122233667777777553     48889988654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.84  E-value=0.0075  Score=48.96  Aligned_cols=218  Identities=7%  Similarity=0.024  Sum_probs=111.9

Q ss_pred             eEEEeeC--CCeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC----CeEEEEECCCcce--e
Q 019326           54 AAASGGT--DDTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD----GFVSIFDADPFVL--L  123 (343)
Q Consensus        54 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~  123 (343)
                      +++.|+.  ...+.+||..+++-..  .+... ...- ++... ++     ..++.|+.+    ..+.+||..+.+-  +
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~-~~~~~-~~-----~lyv~GG~~~~~~~~~~~~d~~~~~W~~~   85 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-RRDA-ACVFW-DN-----VVYILGGSQLFPIKRMDCYNVVKDSWYSK   85 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCC-CBSC-EEEEE-TT-----EEEEECCBSSSBCCEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcc-ccee-EEEEE-CC-----EEEEEeCCCCCCcceEEEEeCCCCeEEEC
Confidence            3444543  3568899988875332  22221 1222 22222 34     577777755    6788999876542  2


Q ss_pred             eeeeeccccEEEEEEecCCCEEEEEeCC------CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-e----
Q 019326          124 TSVKVHKKGVNDLAVHHSGKLALTVGRD------DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-T----  190 (343)
Q Consensus       124 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~----  190 (343)
                      ..+.........+.  -+++.++.|+.+      ..+.+||..+.+-......+.+  -..++. .+++.++.+ .    
T Consensus        86 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  162 (306)
T 3ii7_A           86 LGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNN  162 (306)
T ss_dssp             ECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCT
T ss_pred             CCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCC
Confidence            22221111112222  256677777755      4588999988764433333221  122222 255555555 2    


Q ss_pred             -----CCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCce--eEEecccccccE
Q 019326          191 -----EEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGKV--AYCIEDAHSARV  256 (343)
Q Consensus       191 -----~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~h~~~v  256 (343)
                           -..+.+||+.+.+-...-.  ....-.++...++.+++.|+.+     ..+.+||+.+.+-  +..+. ......
T Consensus       163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~  241 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-WKGVTV  241 (306)
T ss_dssp             TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-CCBSCC
T ss_pred             CcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-CCccce
Confidence                 3458889988765433222  1111122222266677777653     4588999887642  21222 111111


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCC-----CcEEEEeccCc
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSD-----GVICVWDVRMA  294 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  294 (343)
                       +++.. ++.         +++.|+.+     ..+.+||+.+.
T Consensus       242 -~~~~~-~~~---------i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          242 -KCAAV-GSI---------VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             -EEEEE-TTE---------EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             -eEEEE-CCE---------EEEEeCcCCCeeeeeEEEEcCCCC
Confidence             22222 332         77777754     46888898875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.73  E-value=0.014  Score=48.52  Aligned_cols=216  Identities=11%  Similarity=0.031  Sum_probs=111.5

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCee--eeEec---cCCCCCeEEEEEeCC---CCCCCCceEEEeeC-C--
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSS--LGAIH---HHESSSVTSLAFYTP---QNLSVPRNLFSTSA-D--  109 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~~v~~l~~~~~---~~~~~~~~l~s~~~-d--  109 (343)
                      -.....|+|. ...|+.+..+|.|++++  +++.  +..+.   .. ......|+++|+   +     ..|+.+.. .  
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g-~~~p~gia~~pdf~~~-----g~lYv~~~~~~~  101 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRG-ESGLLGLALHPRFPQE-----PYVYAYRTVAEG  101 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCST-TCSEEEEEECTTTTTS-----CEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecC-CCCceeEEECCCCCCC-----CEEEEEEecCCC
Confidence            3456789998 33466667779999998  3432  22121   12 457899999998   3     24444333 2  


Q ss_pred             ---CeEEEEECCCcc-----ee-eeeee---ccccEEEEEEecCCCEEEEEeC-------------CCeEEEEEccCC--
Q 019326          110 ---GFVSIFDADPFV-----LL-TSVKV---HKKGVNDLAVHHSGKLALTVGR-------------DDCLAMVNLVRG--  162 (343)
Q Consensus       110 ---g~i~iwd~~~~~-----~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~wd~~~~--  162 (343)
                         +.|..++.....     .+ ..+..   .......++|.|+|.+.++.+.             .|.|.-++....  
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence               678888876431     11 11221   0113368999999976666542             145665655420  


Q ss_pred             ----------ceeEEEEcC-CcceEEEEeC-CCCEEEEE-eCCcE------EEEEcccce------------------eE
Q 019326          163 ----------RRSFYHKIG-KEASLIKFDG-SGEKFFMV-TEEKV------GIHQAEDAK------------------LL  205 (343)
Q Consensus       163 ----------~~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~~i------~~~d~~~~~------------------~~  205 (343)
                                ......... ..+..++|+| ++..+++- ..+.+      .+.-+..+.                  +.
T Consensus       182 ~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                      011111222 3356689999 55544444 22321      122222221                  12


Q ss_pred             EEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCce------eEEecccccccEEEEEEEecCC
Q 019326          206 CELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKV------AYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       206 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ..+.+......+++..+.++++.-..+.|...++.....      ...+. .-...+..+++.|++.
T Consensus       262 ~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~  327 (352)
T 2ism_A          262 YFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGA  327 (352)
T ss_dssp             EECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSC
T ss_pred             EecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCc
Confidence            222223345566665666666655667777777653321      11221 1224567777766654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.72  E-value=0.025  Score=50.94  Aligned_cols=195  Identities=8%  Similarity=-0.026  Sum_probs=117.2

Q ss_pred             CCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           43 SPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        43 ~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ..+.+|+|+  ++.| ++-...+.|+.++.+.......+... -.....+++.+.+.    +++++-+..+.|.+.+++.
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~-~~~p~GlAvD~~~~----~lY~tD~~~~~I~v~~~~G  423 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-IAHPDGIAVDWVAR----NLYWTDTGTDRIEVTRLNG  423 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTT----EEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC-CCCcCceEEecccC----cEEEEeCCCCcEEEEeCCC
Confidence            457788887  4444 44445788999998754433333333 35677899986541    5666666778999999876


Q ss_pred             cceeeeee-eccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE--eCCc
Q 019326          120 FVLLTSVK-VHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       120 ~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      .. ...+. ..-....+|+++|....|+.+..  ...|...++.......... .-..+..+++++.+..|+.+  ..+.
T Consensus       424 ~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~  502 (619)
T 3s94_A          424 TM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK  502 (619)
T ss_dssp             CS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             Ce-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE
Confidence            43 33332 23346789999997444444432  3677777765433322222 23567889999988888887  5567


Q ss_pred             EEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCc
Q 019326          194 VGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      |..+++........+. .-.....++...+.++++-...+.|...|..++.
T Consensus       503 I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          503 IEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSCC
T ss_pred             EEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCCc
Confidence            8888875443222211 1112223444344444444456667777777663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.70  E-value=0.013  Score=47.34  Aligned_cols=221  Identities=12%  Similarity=0.136  Sum_probs=111.1

Q ss_pred             ceEEEeeCC----CeEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----CeEEEEECCCcc
Q 019326           53 TAAASGGTD----DTIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GFVSIFDADPFV  121 (343)
Q Consensus        53 ~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~  121 (343)
                      .+++.|+.+    ..+..||..+.+-...  +... ... .+++.. ++     ..++.|+.+     ..+.+||..+.+
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR-RCR-AGMVYM-AG-----LVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC-CBS-CEEEEE-TT-----EEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc-ccc-ceEEEE-CC-----EEEEEeCcCCCccccceEEECCCCCc
Confidence            445555543    3588899887753322  1111 111 122222 44     577777755     358889987643


Q ss_pred             --eeeeeeeccccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-e-
Q 019326          122 --LLTSVKVHKKGVNDLAVHHSGKLALTVGRDD-----CLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-T-  190 (343)
Q Consensus       122 --~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-  190 (343)
                        .+..+...........  -++..++.|+.++     .+.+||+.+.+-......+.+  -..++.. +++.++.+ . 
T Consensus        89 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~  165 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYD  165 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred             eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCC
Confidence              2222221111112222  2566777777553     577888887764443333322  1222222 45555554 2 


Q ss_pred             ------CCcEEEEEcccceeEEE--ecCCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCceeEEeccc-ccccE
Q 019326          191 ------EEKVGIHQAEDAKLLCE--LDGKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGKVAYCIEDA-HSARV  256 (343)
Q Consensus       191 ------~~~i~~~d~~~~~~~~~--~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-h~~~v  256 (343)
                            -..+.+||+.+.+-...  +.....-.+++..++.+++.|+.+     ..+.+||+.+.+-. .+... ....-
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~  244 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRN  244 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBS
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCcccc
Confidence                  23588899887654332  221111122233366777777654     46899999876422 22201 11111


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCC-----cEEEEeccCcc
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDG-----VICVWDVRMAI  295 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~  295 (343)
                      .+++.. ++.         +++.|+.++     .+.+||+.+..
T Consensus       245 ~~~~~~-~~~---------i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          245 AGVCAV-NGL---------LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CEEEEE-TTE---------EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CeEEEE-CCE---------EEEECCcCCCcccccEEEEcCCCCe
Confidence            122222 332         777777653     48889988763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.61  E-value=0.021  Score=47.27  Aligned_cols=175  Identities=13%  Similarity=0.074  Sum_probs=100.4

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecC-----CCCCeEEEEec----Cc-eEEEe-eC--CCeEEEEEcCCC--
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA-----HLSPITTVAVS----GT-AAASG-GT--DDTIHLYDLSTS--   72 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~----~~-~l~s~-~~--dg~i~iwd~~~~--   72 (343)
                      .+|.|.++|.....     .+   .+.+ .+.+     .......+.+.    +. +|+.+ ..  +.+|.+|+++..  
T Consensus        81 ~~G~I~~~d~~~~~-----~~---~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~  151 (355)
T 3sre_A           81 KSGKILLMDLNEKE-----PA---VSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK  151 (355)
T ss_dssp             -CCEEEEEETTSSS-----CC---EEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT
T ss_pred             CCCeEEEEecCCCC-----Cc---eEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC
Confidence            68999999986411     11   1111 1222     23355666652    32 34443 22  567888877653  


Q ss_pred             --eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-----------------CCCeEEEEECCCcceeeeeeeccccE
Q 019326           73 --SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-----------------ADGFVSIFDADPFVLLTSVKVHKKGV  133 (343)
Q Consensus        73 --~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~v  133 (343)
                        ..+..+.+..-...+.+.+.+++     .+.++..                 ..|.|.-+|.  ++ +..+...-...
T Consensus       152 ~~~~~~~~~g~~~~~pND~~v~~~G-----~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~p  223 (355)
T 3sre_A          152 SLLHLKTIRHKLLPSVNDIVAVGPE-----HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFA  223 (355)
T ss_dssp             EEEEEEEECCTTCSSEEEEEEEETT-----EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSE
T ss_pred             EEEEEeccccCCCCCCceEEEeCCC-----CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCccc
Confidence              22334444434678899999998     5555543                 1245555554  33 23333333467


Q ss_pred             EEEEEecCCCEEEEEe-CCCeEEEEEccC-Ccee--EEEEcCCcceEEEEeC-CCCEEEEEe--CCcEEEEEc
Q 019326          134 NDLAVHHSGKLALTVG-RDDCLAMVNLVR-GRRS--FYHKIGKEASLIKFDG-SGEKFFMVT--EEKVGIHQA  199 (343)
Q Consensus       134 ~~i~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~i~~~d~  199 (343)
                      +.++|+|+++.|+.+. ..+.|..|++.. +...  ..+..+..+-.+++++ +|++.+++.  .+.+..|+.
T Consensus       224 NGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          224 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            8999999998776655 578999999864 3321  2234456677789998 588777662  234444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.61  E-value=0.022  Score=47.36  Aligned_cols=233  Identities=11%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc-eeeeee---eccccEEEEEEecC---CCEEEEEeC----C
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV-LLTSVK---VHKKGVNDLAVHHS---GKLALTVGR----D  151 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~~~~~----d  151 (343)
                      -.....|+|.|++     + |+.+..+|.|++++. +++ .+..+.   ........|+++|+   +..|+++..    +
T Consensus        28 l~~P~~ia~~pdG-----~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           28 LEVPWSIAPLGGG-----R-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             CSCEEEEEEEETT-----E-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             CCCCeEEEEcCCC-----e-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            3567899999998     4 666677799999974 343 222211   12346889999997   445544433    3


Q ss_pred             ----CeEEEEEccCC--c----eeEE--EEc--CCcceEEEEeCCCCEEEEEeC--------------CcEEEEEcccc-
Q 019326          152 ----DCLAMVNLVRG--R----RSFY--HKI--GKEASLIKFDGSGEKFFMVTE--------------EKVGIHQAEDA-  202 (343)
Q Consensus       152 ----~~i~~wd~~~~--~----~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~--------------~~i~~~d~~~~-  202 (343)
                          +.|..|+....  .    ....  ...  .+....+.|.|+|.++++..+              +.|.-++.... 
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence                56777877654  1    1111  111  134567999999986666432              23444443321 


Q ss_pred             --------eeEEEecCCcceEEeeecC-CCeEEEEeCCC----cEEEEECCC----------------CceeEEeccccc
Q 019326          203 --------KLLCELDGKKRILCAAPGE-NGVLFTGGEDR----SITAWDTNS----------------GKVAYCIEDAHS  253 (343)
Q Consensus       203 --------~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg----~i~i~d~~~----------------~~~~~~~~~~h~  253 (343)
                              ..+....+ .....+++++ ...|+++....    .|.+.....                ..++..+. ...
T Consensus       181 p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~  258 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SET  258 (354)
T ss_dssp             CTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred             CCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCC
Confidence                    01111112 2234567765 44455544321    233332110                01333432 123


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc-CCCcccccccccceeEEEcCCCCceecccc
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE-KPLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      .....+++.....  .-..++.++++.-..+.|...++...... ....+.. ....++..+++.||+.+.+...
T Consensus       259 ~ap~G~~~y~g~~--fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDM--FPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSS--CGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCC--CcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence            4577888864322  11134557777777788888888753211 0111111 1245789999999998776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.0012  Score=54.21  Aligned_cols=142  Identities=10%  Similarity=0.091  Sum_probs=88.5

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeecc-ccEEEEEEe--c-CCCEEEEE-eCCCeEEEEEccCCceeEEEEcCCcce
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHK-KGVNDLAVH--H-SGKLALTV-GRDDCLAMVNLVRGRRSFYHKIGKEAS  175 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~--~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~  175 (343)
                      ..++.++.||.|.-.|..+|+.+.+++... .++....-.  + ++..++.. +.||.|..++..+|........+..+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            589999999999999999999999987541 222221100  1 22333333 589999999998886655554432221


Q ss_pred             E--EEEe-----------CCCCEEEEE-eCCcEEEEEcccceeEEEecCCcce--------EEeee------cCCCeEEE
Q 019326          176 L--IKFD-----------GSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRI--------LCAAP------GENGVLFT  227 (343)
Q Consensus       176 ~--~~~~-----------~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i--------~~~~~------~~~~~l~~  227 (343)
                      .  +...           ..+..++++ .++.+...|+++|+.+..+....+.        .|...      ..++.++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            1  2211           033444555 9999999999999999999843221        11111      12356777


Q ss_pred             EeCCCcEEEEECCCCc
Q 019326          228 GGEDRSITAWDTNSGK  243 (343)
Q Consensus       228 ~~~dg~i~i~d~~~~~  243 (343)
                      +..+..+.+.+ ++|+
T Consensus       171 g~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA  185 (339)
T ss_dssp             EEEEEECEECC-TTSC
T ss_pred             ecceEEEEEEC-CCCC
Confidence            77777777777 4454

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.43  E-value=0.017  Score=47.00  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=110.4

Q ss_pred             CceEEEeeC----CCeEEEEEcCCCeeeeE--eccCCCCCeEEEEEeCCCCCCCCceEEEeeC----C-----CeEEEEE
Q 019326           52 GTAAASGGT----DDTIHLYDLSTSSSLGA--IHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----D-----GFVSIFD  116 (343)
Q Consensus        52 ~~~l~s~~~----dg~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----d-----g~i~iwd  116 (343)
                      +.+++.|+.    -..+.+||..+.+-...  +... ... .+++.. ++     ..++.|+.    +     ..+.+||
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-RSG-LAGCVV-GG-----LLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-CBS-CEEEEE-TT-----EEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc-ccc-ceEEEE-CC-----EEEEECCCcCCCCCCeecceEEEEC
Confidence            566666663    24588999887753322  2211 111 122333 34     57777776    2     4688899


Q ss_pred             CCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEE
Q 019326          117 ADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFF  187 (343)
Q Consensus       117 ~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  187 (343)
                      +.+.+  .+..+...........+  +++.++.|+.+     ..+.+||+.+.+-......+..  -..++.. ++..++
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv  173 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYA  173 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEE
Confidence            87643  22222211112222222  56677776643     4588899887764333222211  1222222 455555


Q ss_pred             EE-e-----CCcEEEEEcccceeEEEe--cCCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCceeEEeccc-cc
Q 019326          188 MV-T-----EEKVGIHQAEDAKLLCEL--DGKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGKVAYCIEDA-HS  253 (343)
Q Consensus       188 ~~-~-----~~~i~~~d~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-h~  253 (343)
                      .+ .     ...+.+||+.+.+-...-  .....-.+++..++.+++.|+.+     ..+.+||+.+.+-. .+... ..
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~  252 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHR  252 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSC
T ss_pred             EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCCCCCC
Confidence            55 2     245888998776533221  11111112222366777777654     56899999876422 22101 11


Q ss_pred             ccEEEEEEEecCCCCCCCCCCeEEEEEcCC-----CcEEEEeccCc
Q 019326          254 ARVKGIVVLTKNDGGSTAENPYLVASASSD-----GVICVWDVRMA  294 (343)
Q Consensus       254 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  294 (343)
                      ..-.+++.. ++.         +++.|+.+     ..+.+||+.+.
T Consensus       253 r~~~~~~~~-~~~---------i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          253 RSALGITVH-QGR---------IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CBSCEEEEE-TTE---------EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ccceEEEEE-CCE---------EEEEcCcCCCcccceEEEEcCCCC
Confidence            111122222 332         77777654     35778888765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.05  Score=47.14  Aligned_cols=152  Identities=9%  Similarity=0.058  Sum_probs=92.3

Q ss_pred             CeEEEEEeCC-CCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec---cccEEEEEE-------ecCCCEEEEEeCCC-
Q 019326           85 SVTSLAFYTP-QNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH---KKGVNDLAV-------HHSGKLALTVGRDD-  152 (343)
Q Consensus        85 ~v~~l~~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~~~~~d~-  152 (343)
                      ....|+|.|. ..    +++++-...+.|++.|++++.........   ......|+|       +++++.|+++...+ 
T Consensus       140 ~p~~la~dp~~~~----~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKD----HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEE----EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCC----EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            4568999983 41    34444444567999998876554433321   125899999       99998666666543 


Q ss_pred             ------eEEEEEccC-Ccee-----EEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcc-------ccee-------
Q 019326          153 ------CLAMVNLVR-GRRS-----FYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAE-------DAKL-------  204 (343)
Q Consensus       153 ------~i~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~-------~~~~-------  204 (343)
                            .|.+++... +...     ........+..++++|++..|+.+  .++.|..+|+.       ++..       
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                  266665433 1221     122223455678899965555554  78889999997       4443       


Q ss_pred             -------EEEecCCcceEEeeecC-CCeEEEE-eCCCcEEEEECC
Q 019326          205 -------LCELDGKKRILCAAPGE-NGVLFTG-GEDRSITAWDTN  240 (343)
Q Consensus       205 -------~~~~~~~~~i~~~~~~~-~~~l~~~-~~dg~i~i~d~~  240 (343)
                             +...........+++++ ++.|+.+ +....|+.++..
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                   11222334467888884 5544444 566788886653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.43  E-value=0.017  Score=46.91  Aligned_cols=184  Identities=13%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             EecCceEEEeeC----C-----CeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-----CeE
Q 019326           49 AVSGTAAASGGT----D-----DTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-----GFV  112 (343)
Q Consensus        49 ~~~~~~l~s~~~----d-----g~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i  112 (343)
                      .+.+.+++.|+.    +     ..+.+||..+.+-..  .+... ...-. ++.. ++     +.++.|+.+     ..+
T Consensus        68 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~-~~~~-~~-----~iyv~GG~~~~~~~~~~  139 (308)
T 1zgk_A           68 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-RNRIG-VGVI-DG-----HIYAVGGSHGCIHHNSV  139 (308)
T ss_dssp             EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-CBTCE-EEEE-TT-----EEEEECCEETTEECCCE
T ss_pred             EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-ccccE-EEEE-CC-----EEEEEcCCCCCcccccE
Confidence            344667777765    2     458889988765322  22221 12222 2222 44     577777653     368


Q ss_pred             EEEECCCcc--eeeeeeeccccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCceeEEEEcCC--cceEEEEeCCC
Q 019326          113 SIFDADPFV--LLTSVKVHKKGVNDLAVHHSGKLALTVGRD-----DCLAMVNLVRGRRSFYHKIGK--EASLIKFDGSG  183 (343)
Q Consensus       113 ~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~  183 (343)
                      .+||+.+.+  .+..+.........+.+  +++.++.|+.+     ..+..||+.+.+-......+.  ....+... ++
T Consensus       140 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~  216 (308)
T 1zgk_A          140 ERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HN  216 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT
T ss_pred             EEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CC
Confidence            889987643  22222211112122222  56677777654     458899988776433322221  11222222 45


Q ss_pred             CEEEEE-eC-----CcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          184 EKFFMV-TE-----EKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       184 ~~~~~~-~~-----~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      ..++.+ .+     ..+.+||+.+.+-...-.  ....-.+++..++.+++.|+.+     ..+.+||+.+.+
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            555555 32     568899988765433212  1111112223366777777654     357788887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.42  E-value=0.024  Score=46.17  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=105.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCC--CCCeEEEEecCceEEEeeC----C-------CeEEEEEc
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAH--LSPITTVAVSGTAAASGGT----D-------DTIHLYDL   69 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~l~s~~~----d-------g~i~iwd~   69 (343)
                      ++.|+  ..+.+||..+        .....   ..+...  ...-..+...+..++.|+.    +       ..+.+||.
T Consensus         8 ~~~GG--~~~~~yd~~~--------~~W~~---~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~   74 (315)
T 4asc_A            8 FMISE--EGAVAYDPAA--------NECYC---ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH   74 (315)
T ss_dssp             EEEET--TEEEEEETTT--------TEEEE---EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred             EEEcC--CceEEECCCC--------CeEec---CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence            44555  5788898876        12221   222221  1112222233677777773    1       12778888


Q ss_pred             CCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC--------CeEEEEECCCcc--eeeeeeeccccEEEEE
Q 019326           70 STSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD--------GFVSIFDADPFV--LLTSVKVHKKGVNDLA  137 (343)
Q Consensus        70 ~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~--~~~~~~~~~~~v~~i~  137 (343)
                      .+.+-..  .+... ... .+++.. ++     ..++.|+.+        ..+.+||..+.+  .+..+.........+ 
T Consensus        75 ~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-  145 (315)
T 4asc_A           75 LDSEWLGMPPLPSP-RCL-FGLGEA-LN-----SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-  145 (315)
T ss_dssp             TTTEEEECCCBSSC-EES-CEEEEE-TT-----EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred             CCCeEEECCCCCcc-hhc-eeEEEE-CC-----EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence            8765322  11111 111 122222 33     567777742        468899987643  222222111111222 


Q ss_pred             EecCCCEEEEEeC------CCeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-eCC-----cEEEEEcccce
Q 019326          138 VHHSGKLALTVGR------DDCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-TEE-----KVGIHQAEDAK  203 (343)
Q Consensus       138 ~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~-----~i~~~d~~~~~  203 (343)
                       ..+++.++.|+.      -..+.+||+.+.+-......+.+  ...++.. +++.++.+ .++     .+.+||+.+.+
T Consensus       146 -~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          146 -SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             -EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             -EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence             235667777775      24688999887764333222221  1222222 55555555 322     47788887764


Q ss_pred             eEEEec--CCcceEEeeecCCCeEEEEeCCC--------------cEEEEECCCCc
Q 019326          204 LLCELD--GKKRILCAAPGENGVLFTGGEDR--------------SITAWDTNSGK  243 (343)
Q Consensus       204 ~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~  243 (343)
                      -...-.  ....-.+++..++.+++.|+.++              .+.+||+.+.+
T Consensus       224 W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            333222  11111122233666677776532              36677877654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.41  E-value=0.037  Score=45.09  Aligned_cols=178  Identities=7%  Similarity=0.039  Sum_probs=90.2

Q ss_pred             EEEeeCCCeEEEEEcCCCeeee-EeccCCCCCeEEEEEeCCCCCCCCceEEEeeC----C-------CeEEEEECCCcce
Q 019326           55 AASGGTDDTIHLYDLSTSSSLG-AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----D-------GFVSIFDADPFVL  122 (343)
Q Consensus        55 l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~  122 (343)
                      ++.|+  ..+.+||..+++-.. .+... ......-....++     ..++.|+.    +       ..+.+||..+.+-
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p-~~r~~~~~~~~~~-----~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQ-VPKNHVSLVTKEN-----QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCC-SCSSEEEEECTTC-----CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCC-CCccceEEEEECC-----EEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            44455  569999999886432 12111 1222222333344     57777773    1       1277888876432


Q ss_pred             --eeeeeeccccEEEEEEecCCCEEEEEeCC--------CeEEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-
Q 019326          123 --LTSVKVHKKGVNDLAVHHSGKLALTVGRD--------DCLAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       123 --~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-  189 (343)
                        +..+.........+.+  ++..++.|+.+        ..+.+||..+.+-......+.+  -.+++. .+++.++.+ 
T Consensus        80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  156 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGG  156 (315)
T ss_dssp             EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeC
Confidence              2222111111111222  55667777632        4588999987754332222221  122222 345555555 


Q ss_pred             e-C-----CcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCCC-----cEEEEECCCCc
Q 019326          190 T-E-----EKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGEDR-----SITAWDTNSGK  243 (343)
Q Consensus       190 ~-~-----~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  243 (343)
                      . +     ..+.+||..+.+-...-.  ....-.+++..++.+++.|+.++     .+.+||+.+.+
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            3 2     468889988765333222  11111222233667777777654     48889988764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=97.26  E-value=0.05  Score=43.53  Aligned_cols=251  Identities=13%  Similarity=0.050  Sum_probs=133.3

Q ss_pred             CeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee
Q 019326           44 PITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL  123 (343)
Q Consensus        44 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  123 (343)
                      .|..++......+.-. ||.|..|-....-.+..-... ...|..++.....      .++. . ||.|+.|-....-.+
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~-~~~i~~ia~G~~h------s~~l-~-~G~v~~wG~n~~Gql   94 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT-QSGVDAIAAGNYH------SLAL-K-DGEVIAWGGNEDGQT   94 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGG-GSCCCEEEECSSE------EEEE-E-TTEEEEEECCTTSTT
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccC-CCCEEEEEeCCCE------EEEE-E-CCEEEEeeCCCCCCC
Confidence            5777777644433335 899999976543222211112 3467777776543      3444 4 999999986432211


Q ss_pred             eeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE-EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccc
Q 019326          124 TSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF-YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDA  202 (343)
Q Consensus       124 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  202 (343)
                      ..-..-...|..++....  +.+... ||.|+.|-....-++. .......+..++..  ....+...++.+..|-....
T Consensus        95 g~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G--~~~~~~l~~G~v~~wG~n~~  169 (282)
T 3qhy_B           95 TVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTALAVKNGGVIAWGDNYF  169 (282)
T ss_dssp             CCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEEEEETTEEEEEECCTT
T ss_pred             CCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc--cCEEEEEECCEEEEecCCCC
Confidence            110111246777777655  334445 8999999765432211 11112334444432  22222224788888865432


Q ss_pred             eeEE-EecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          203 KLLC-ELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       203 ~~~~-~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      ..+. .......|..++......++.  .||.|+.|-....-.+. ++......|..++.....          .++.. 
T Consensus       170 gqlg~p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h----------~~al~-  235 (282)
T 3qhy_B          170 GQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY----------SLALK-  235 (282)
T ss_dssp             STTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC----------EEEEE-
T ss_pred             CCCCCceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCE----------EEEEE-
Confidence            2111 111234577777754445555  59999999765432221 111223456677654443          33333 


Q ss_pred             CCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCC
Q 019326          282 SDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAP  332 (343)
Q Consensus       282 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~  332 (343)
                       ||.|..|=.....   +..     ....|..++......+.+....+...
T Consensus       236 -~g~v~~wG~n~~g---q~~-----v~~~v~~iaaG~~h~~al~~~~~~~~  277 (282)
T 3qhy_B          236 -NGKVIAWGSSRTA---PSS-----VQSGVSSIEAGPNAAYALKGGSGSGH  277 (282)
T ss_dssp             -TTEEEEESTTCCC---CGG-----GSSCEEEEEECSSCEEEEEC------
T ss_pred             -CCEEEEecCCCCc---ccc-----CCCCcEEEEECcCeEEEEecCCCCCc
Confidence             9999999766532   111     13468888888887777766554433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.20  E-value=0.072  Score=44.19  Aligned_cols=223  Identities=15%  Similarity=0.082  Sum_probs=107.3

Q ss_pred             cCceEEEeeC-CCeEEEEEcCC--C--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC-C---------CeEEEE
Q 019326           51 SGTAAASGGT-DDTIHLYDLST--S--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA-D---------GFVSIF  115 (343)
Q Consensus        51 ~~~~l~s~~~-dg~i~iwd~~~--~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-d---------g~i~iw  115 (343)
                      .+.+++.|+. ...+.+||..+  .  +.+..+....... .+++.. ++     .+++.|+. +         ..+.+|
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~~-~~-----~lyv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAFI-DG-----NLYVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEEE-TT-----EEEEECCEEECTTSCEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEEE-CC-----EEEEEcCCCCCCCccceeeccEEEE
Confidence            4666666654 34688888864  2  2222222110111 223333 34     57777776 2         468899


Q ss_pred             ECCCcc--eeeeee-eccccEEEEEEecCCCEEEEEeCC---------------------------------------Ce
Q 019326          116 DADPFV--LLTSVK-VHKKGVNDLAVHHSGKLALTVGRD---------------------------------------DC  153 (343)
Q Consensus       116 d~~~~~--~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d---------------------------------------~~  153 (343)
                      |+.+.+  .+..+. ........+.  .++++++.|+.+                                       ..
T Consensus        92 d~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (357)
T 2uvk_A           92 NPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF  169 (357)
T ss_dssp             ETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCE
T ss_pred             eCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCccc
Confidence            987643  222222 1111222222  467777888764                                       57


Q ss_pred             EEEEEccCCceeEEEEcCCc--c-eEEEEeCCCCEEEEE-e------CCcEEEEEc--ccceeEEEec---CCcc--eEE
Q 019326          154 LAMVNLVRGRRSFYHKIGKE--A-SLIKFDGSGEKFFMV-T------EEKVGIHQA--EDAKLLCELD---GKKR--ILC  216 (343)
Q Consensus       154 i~~wd~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~------~~~i~~~d~--~~~~~~~~~~---~~~~--i~~  216 (343)
                      +.+||+.+.+-......+..  . ..++.. +++.++.+ .      ...+..||+  .+.+ ...+.   ....  -.+
T Consensus       170 v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          170 LLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCE
T ss_pred             EEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccce
Confidence            89999988775544444322  2 233333 44555544 2      235667776  3332 22222   1111  112


Q ss_pred             eeecCCCeEEEEeCC----------------------CcEEEEECCCCc--eeEEecccccccEEEEEEEecCCCCCCCC
Q 019326          217 AAPGENGVLFTGGED----------------------RSITAWDTNSGK--VAYCIEDAHSARVKGIVVLTKNDGGSTAE  272 (343)
Q Consensus       217 ~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  272 (343)
                      +...++.+++.|+.+                      ..+.+||+.+.+  .+..+. .....-.+  +..++.      
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~--~~~~~~------  318 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVS--LPWNNS------  318 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEE--EEETTE------
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCccccee--EEeCCE------
Confidence            333366777777632                      257789987653  333343 11111112  222333      


Q ss_pred             CCeEEEEEcCCC------cEEEEeccCccc
Q 019326          273 NPYLVASASSDG------VICVWDVRMAIK  296 (343)
Q Consensus       273 ~~~~l~s~~~dg------~i~vwd~~~~~~  296 (343)
                         +++.|+.++      .|.++++++.+.
T Consensus       319 ---i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          319 ---LLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             ---EEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             ---EEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence               777787653      355557776643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.17  E-value=0.067  Score=43.57  Aligned_cols=181  Identities=13%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             CceEEEeeC----CC-------eEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-------Ce
Q 019326           52 GTAAASGGT----DD-------TIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-------GF  111 (343)
Q Consensus        52 ~~~l~s~~~----dg-------~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-------g~  111 (343)
                      +..++.|+.    ++       .+.+||..+.+-..  .+... ... .+++.. ++     ..++.|+.+       ..
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~-~~~~~~-~~-----~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-RCL-FGLGEV-DD-----KIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-BCS-CEEEEE-TT-----EEEEEEEEBTTTCCEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-ccc-cceEEE-CC-----EEEEEcCccCCCCcccce
Confidence            667777773    12       27788887765332  22211 111 222222 34     567777754       35


Q ss_pred             EEEEECCCcce--eeeeeeccccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceeEEEEcCCc--ceEEEEeC
Q 019326          112 VSIFDADPFVL--LTSVKVHKKGVNDLAVHHSGKLALTVGR------DDCLAMVNLVRGRRSFYHKIGKE--ASLIKFDG  181 (343)
Q Consensus       112 i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~  181 (343)
                      +.+||..+.+-  +..+......-. ++. .+++.++.|+.      -..+.+||+.+.+-......+.+  ...++.. 
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  205 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-  205 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             EEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-
Confidence            78888876432  222211111111 112 35667677764      24588999988764433333221  1223332 


Q ss_pred             CCCEEEEE-e-C----CcEEEEEcccceeEEE--ecCCcceEEeeecCCCeEEEEeCC--------------CcEEEEEC
Q 019326          182 SGEKFFMV-T-E----EKVGIHQAEDAKLLCE--LDGKKRILCAAPGENGVLFTGGED--------------RSITAWDT  239 (343)
Q Consensus       182 ~~~~~~~~-~-~----~~i~~~d~~~~~~~~~--~~~~~~i~~~~~~~~~~l~~~~~d--------------g~i~i~d~  239 (343)
                      ++..++.+ . +    ..+.+||+.+.+-...  ++....-.++...++.+++.|+.+              ..+.+||+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  285 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED  285 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEET
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeC
Confidence            45555555 2 2    3466888877653322  111111112233366677777653              35778888


Q ss_pred             CCCc
Q 019326          240 NSGK  243 (343)
Q Consensus       240 ~~~~  243 (343)
                      .+.+
T Consensus       286 ~~~~  289 (318)
T 2woz_A          286 DKKE  289 (318)
T ss_dssp             TTTE
T ss_pred             CCCE
Confidence            7654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.15  E-value=0.09  Score=44.37  Aligned_cols=212  Identities=13%  Similarity=0.117  Sum_probs=136.1

Q ss_pred             CCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeecc----ccEEE
Q 019326           61 DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHK----KGVND  135 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~  135 (343)
                      ..++.++|+++...+..+.-.  ..|.-=.|-.+.      .|+-.+ +..|+-|++.. ..++..+..|.    ..|..
T Consensus        85 g~~lQiFnle~K~klks~~~~--e~VvfWkWis~~------~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIIn  155 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLN------TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN  155 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECS--SCCCEEEEEETT------EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEE
T ss_pred             CCeEEEEchHHhhhhcceecC--CCceEEEecCCC------eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEE
Confidence            688999999999888888766  467677777665      555554 34899999964 35666666554    37778


Q ss_pred             EEEecCCCEEEEEeC-------CCeEEEEEccCCceeEEEEcCCcceE-EEEeCCC-----CEEEEEe----CCcEEEEE
Q 019326          136 LAVHHSGKLALTVGR-------DDCLAMVNLVRGRRSFYHKIGKEASL-IKFDGSG-----EKFFMVT----EEKVGIHQ  198 (343)
Q Consensus       136 i~~~~~~~~l~~~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~----~~~i~~~d  198 (343)
                      ...+++.++++..+-       .|.+.+|..+.+.....   .+...+ ..+-.+|     ..++.+.    .+++.+.+
T Consensus       156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E  232 (494)
T 1bpo_A          156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  232 (494)
T ss_dssp             EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE---CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred             EEECCCCCeEEEEeecccCCcccceEEEeeccccccchh---eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence            888888888776553       46778888776543222   222211 2222222     2333332    36788888


Q ss_pred             cccc--------eeEEEec-----CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEec
Q 019326          199 AEDA--------KLLCELD-----GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       199 ~~~~--------~~~~~~~-----~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      +...        +....+.     ...-..++..++ -+.++.-+.-|.|++||+.++.++..-+ -...+|..-+....
T Consensus       233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~  311 (494)
T 1bpo_A          233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEA  311 (494)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETT
T ss_pred             cCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-ccCCceEEecccCC
Confidence            7432        1111111     122345566653 4688888999999999999999998877 56666655544443


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      ..         =++.....|.|.--.++..
T Consensus       312 ~~---------Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          312 TA---------GIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TT---------EEEEEETTCEEEEEEECTT
T ss_pred             CC---------cEEEEccCceEEEEEEccc
Confidence            33         4666668888877777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.06  E-value=0.1  Score=43.35  Aligned_cols=232  Identities=13%  Similarity=0.097  Sum_probs=124.8

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc--eeeee----eeccccEEEEEEecC---CCEEEEEe-C---
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV--LLTSV----KVHKKGVNDLAVHHS---GKLALTVG-R---  150 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~----~~~~~~v~~i~~~~~---~~~l~~~~-~---  150 (343)
                      .....|+|.|++     +.|+.+...|.|++++.....  .+..+    .........|+++|+   +..|.... .   
T Consensus        18 ~~P~~i~~~pdG-----~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLPDN-----HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECSTT-----CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CCcEEEEEcCCC-----CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            456899999998     536666778999999864321  11111    112346789999995   44444442 2   


Q ss_pred             ----CCeEEEEEccCCc--e----eEEEEcC------CcceEEEEeCCCCEEEEEeC--------------CcEEEEEcc
Q 019326          151 ----DDCLAMVNLVRGR--R----SFYHKIG------KEASLIKFDGSGEKFFMVTE--------------EKVGIHQAE  200 (343)
Q Consensus       151 ----d~~i~~wd~~~~~--~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------------~~i~~~d~~  200 (343)
                          ...|..+++....  .    ......+      +....+.|.|++.++++..+              +.|.-++..
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence                2356666665331  1    1111111      33567999999966665533              346556554


Q ss_pred             cce------------eEEEec-CCcceEEeeecC-CCeEEEEeCCC--cEEEEECCCC----------------------
Q 019326          201 DAK------------LLCELD-GKKRILCAAPGE-NGVLFTGGEDR--SITAWDTNSG----------------------  242 (343)
Q Consensus       201 ~~~------------~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg--~i~i~d~~~~----------------------  242 (343)
                      ..-            ....+. .......++|++ .+.|+++....  .=.|.-+..+                      
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~  252 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA  252 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence            220            111111 223456777875 55666554321  1112111111                      


Q ss_pred             ---------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeE
Q 019326          243 ---------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTC  313 (343)
Q Consensus       243 ---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~  313 (343)
                               .++..+.  +...+..+++.....-  -..++.++++.-..+.|...+++.+.......+.. ....++..
T Consensus       253 ~~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~f--p~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~  327 (353)
T 2g8s_A          253 KGEIVAGTEQPVFYWK--DSPAVSGMAFYNSDKF--PQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT-DRGQRIRD  327 (353)
T ss_dssp             CBSSCTTSCCCSEEES--SCCCEEEEEEECCSSS--GGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG-GGCCCEEE
T ss_pred             cCCCCCCccCCeEEeC--CCcCcceeEEECCccC--cccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc-CCCCceeE
Confidence                     1223333  3346778888754321  01345588887788888888887542111111111 22457999


Q ss_pred             EEcCCCCceecc
Q 019326          314 LAGSSTKSFKRP  325 (343)
Q Consensus       314 ~~~s~~~~~~~~  325 (343)
                      +++.||+.+.+.
T Consensus       328 v~~~pdG~lyv~  339 (353)
T 2g8s_A          328 VRTGPDGYLYVL  339 (353)
T ss_dssp             EEECTTSCEEEE
T ss_pred             EEECCCCcEEEE
Confidence            999999987765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.00  E-value=0.12  Score=42.99  Aligned_cols=219  Identities=12%  Similarity=0.034  Sum_probs=115.2

Q ss_pred             CCCeEEEEec-CceEEEeeCCCeEEEEEcCCCe-eeeEec--cCCCCCeEEEEEeCC---CCCCCCceEEEeeC----C-
Q 019326           42 LSPITTVAVS-GTAAASGGTDDTIHLYDLSTSS-SLGAIH--HHESSSVTSLAFYTP---QNLSVPRNLFSTSA----D-  109 (343)
Q Consensus        42 ~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~v~~l~~~~~---~~~~~~~~l~s~~~----d-  109 (343)
                      -.....|+|. ...|+.+..+|.|++++. +++ .+..+.  .........|+++|+   +     ..|+.+..    + 
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-----g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-----SWVYLYASYFAEGG  101 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-----CEEEEEEEEECGGG
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-----CEEEEEEeccCCCC
Confidence            4557789998 444666677799999973 454 222221  111356899999997   3     24444332    3 


Q ss_pred             ---CeEEEEECCCc-------cee-eeeee-ccccEEEEEEecCCCEEEEEeC-------------CCeEEEEEccCCc-
Q 019326          110 ---GFVSIFDADPF-------VLL-TSVKV-HKKGVNDLAVHHSGKLALTVGR-------------DDCLAMVNLVRGR-  163 (343)
Q Consensus       110 ---g~i~iwd~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~wd~~~~~-  163 (343)
                         ..|..|+....       +.+ ..+.. .......|+|.|+|.++++.+.             .|.|.-++....- 
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence               56777776543       111 11221 1113467999999987776543             2455555543210 


Q ss_pred             ------eeEEEEcC-CcceEEEEeC-CCCEEEEE-eCC---cEEEEEccc----------------ceeEEEe-cCCcce
Q 019326          164 ------RSFYHKIG-KEASLIKFDG-SGEKFFMV-TEE---KVGIHQAED----------------AKLLCEL-DGKKRI  214 (343)
Q Consensus       164 ------~~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~~---~i~~~d~~~----------------~~~~~~~-~~~~~i  214 (343)
                            ........ .....++|+| ++..+++- ..+   .|.+...-.                ..++..+ ......
T Consensus       182 ~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             TTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence                  01112222 3456799999 55554444 222   233322100                0122232 123345


Q ss_pred             EEeeec--------CCCeEEEEeCCCcEEEEECCCC-cee--EEecccccccEEEEEEEecCC
Q 019326          215 LCAAPG--------ENGVLFTGGEDRSITAWDTNSG-KVA--YCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       215 ~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ..+.+.        .+.++++.-..+.|...++... +..  ..+.......+..+++.|++.
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~  324 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG  324 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc
Confidence            666662        3456666566678888887743 222  222212235677787777664

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.96  E-value=0.17  Score=44.20  Aligned_cols=226  Identities=12%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCC--------------------CCe--EEEEec-----CceE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHL--------------------SPI--TTVAVS-----GTAA   55 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--------------------~~v--~~l~~~-----~~~l   55 (343)
                      +.+|+..|.|+|+-+.+       ++.+...++++...-.                    +..  ..+++.     |++|
T Consensus        73 f~SgG~sG~v~v~G~PS-------mR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGryl  145 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPS-------MRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYL  145 (638)
T ss_dssp             EEECGGGCCEEEEEETT-------TEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEE
T ss_pred             EeecCcCceEEEEecCC-------cceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEE
Confidence            67899999999999987       3444444433211100                    000  123332     5666


Q ss_pred             EEee-CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEe--CCCCCCCCceEEEeeCC-------CeE------------E
Q 019326           56 ASGG-TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFY--TPQNLSVPRNLFSTSAD-------GFV------------S  113 (343)
Q Consensus        56 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~~~~~l~s~~~d-------g~i------------~  113 (343)
                      +.-. ....|-.-+++..++-..+.-.....+..++|-  |+.     .+++.++..       |..            .
T Consensus       146 fiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-----~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          146 FINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-----KYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-----CEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             EEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc-----cEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            6655 456787888888877666654446788999887  555     677777652       221            1


Q ss_pred             EEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC---------------------------------------CC-e
Q 019326          114 IFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR---------------------------------------DD-C  153 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---------------------------------------d~-~  153 (343)
                      ..|..+++...++.- .+........+++.+.++.+.                                       +| .
T Consensus       221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence            123333333332221 112223334555555555442                                       11 2


Q ss_pred             EEEEEccC----C-ceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccccee-------------EEEecCCcc
Q 019326          154 LAMVNLVR----G-RRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKL-------------LCELDGKKR  213 (343)
Q Consensus       154 i~~wd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~-------------~~~~~~~~~  213 (343)
                      +.+.|.+.    + ........+..+..+.++|+|++++++  .+.++.++|.+....             ....+..-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            45555554    2 234455666777889999999999999  788999999985211             233334445


Q ss_pred             eEEeeecCCCeE-EEEeCCCcEEEEECCC
Q 019326          214 ILCAAPGENGVL-FTGGEDRSITAWDTNS  241 (343)
Q Consensus       214 i~~~~~~~~~~l-~~~~~dg~i~i~d~~~  241 (343)
                      ....+|.+.... .+-.-|..|.-|++..
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             ccEEEECCCCceEeeeeecceEEEEeccH
Confidence            667778644444 4455799999999865

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.94  E-value=0.13  Score=42.60  Aligned_cols=56  Identities=21%  Similarity=0.161  Sum_probs=28.7

Q ss_pred             cEEEEEcccceeE--EEecC-CcceEEeeecCCCeEEEEeCCC------cEEEEECCCCceeEEec
Q 019326          193 KVGIHQAEDAKLL--CELDG-KKRILCAAPGENGVLFTGGEDR------SITAWDTNSGKVAYCIE  249 (343)
Q Consensus       193 ~i~~~d~~~~~~~--~~~~~-~~~i~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~  249 (343)
                      .+.+||+.+.+-.  ..+.. .....++.+ ++.+++.|+.++      .|.++++++++.+...+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW-NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEE-TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEe-CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            4678888765432  22221 122223333 677777777543      36667888877665544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.86  E-value=0.14  Score=41.67  Aligned_cols=179  Identities=13%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeee-EeccCCCCCeEEEEEeCCCCCCCCceEEEeeC----CC-------eEEEEECCCcc
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLG-AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA----DG-------FVSIFDADPFV  121 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~  121 (343)
                      .++.|+.  .+..||..+++-.. .+.......-.+++ ..++     ..++.|+.    ++       .+.+||..+.+
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~-----~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQN-----QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSS-----CEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECC-----EEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            3444443  37899998876443 12211012222333 3344     57777773    12       27788876543


Q ss_pred             e--eeeeeeccccEEEEEEecCCCEEEEEeCC-------CeEEEEEccCCceeEEEEcCCcc--eEEEEeCCCCEEEEE-
Q 019326          122 L--LTSVKVHKKGVNDLAVHHSGKLALTVGRD-------DCLAMVNLVRGRRSFYHKIGKEA--SLIKFDGSGEKFFMV-  189 (343)
Q Consensus       122 ~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-  189 (343)
                      -  +..+...........+  +++.++.|+.+       ..+.+||+.+.+-......+.+.  ..++. .++..++.+ 
T Consensus        90 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  166 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGG  166 (318)
T ss_dssp             EEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred             EEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence            2  2222211111122222  56677777753       34788888877644333333221  12222 355555555 


Q ss_pred             e------CCcEEEEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCc
Q 019326          190 T------EEKVGIHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGK  243 (343)
Q Consensus       190 ~------~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  243 (343)
                      .      -..+.+||+.+.+-...-.  ....-.+++..++.+++.|+.+     ..+.+||+.+.+
T Consensus       167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             CCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            2      2358899988765433222  1111112233366777777643     347789988764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.85  E-value=0.17  Score=42.58  Aligned_cols=139  Identities=12%  Similarity=0.146  Sum_probs=91.6

Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-----CcceEEEEeCCCCEEEEEeCCcEEEEEcccce-----------
Q 019326          140 HSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-----KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK-----------  203 (343)
Q Consensus       140 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------  203 (343)
                      .++..++.+- ++.||.-++.....-.....+     ..+..+..+|+|.+++..++..|.|..+..+.           
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            3444444443 467777777644433334443     26788999999999999999999999888322           


Q ss_pred             -eEEEec-------CCcceEEeeecC----CCeEEEEeCCCcEEEEECCCCc--eeEEec--------ccccccEEEEEE
Q 019326          204 -LLCELD-------GKKRILCAAPGE----NGVLFTGGEDRSITAWDTNSGK--VAYCIE--------DAHSARVKGIVV  261 (343)
Q Consensus       204 -~~~~~~-------~~~~i~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~--~~~~~~--------~~h~~~v~~~~~  261 (343)
                       ..+.+.       ...+|..+.|++    +..|++-..|+.|++||+....  +. .+.        ......|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             112222       246799999994    5588899999999999998532  22 332        022356788888


Q ss_pred             EecCCCCCCCCCCeEEEE--EcCCCcEEEE
Q 019326          262 LTKNDGGSTAENPYLVAS--ASSDGVICVW  289 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s--~~~dg~i~vw  289 (343)
                      .+++-         .|..  .+..|-|+-.
T Consensus       188 g~~~l---------TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGL---------TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSS---------CEEEEECTTSCEEEEE
T ss_pred             cCCCc---------EEEEEecCCCCCEEEE
Confidence            87554         4444  5577777543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.83  E-value=0.091  Score=44.21  Aligned_cols=141  Identities=14%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             EEeCCCCEEEEEeCCcEEEEEcccceeEEEecCC-----cceEEeeecCCCeEEEEeCCCcEEEEECCCCc---------
Q 019326          178 KFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGK-----KRILCAAPGENGVLFTGGEDRSITAWDTNSGK---------  243 (343)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  243 (343)
                      ....++..++.+.++.||.-++......+.+..+     ..+..+..++.+.+++-..+..|.|..+..+.         
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence            3455677777777888888887754444444432     25777888865444444456689998887332         


Q ss_pred             ---eeEEeccc-----ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc----cccc---cc
Q 019326          244 ---VAYCIEDA-----HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL----AEAK---TN  308 (343)
Q Consensus       244 ---~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~---~~  308 (343)
                         ..+.+.-+     ...+|..+.|+|.+.      ++..|++-..|+.||+||+.... ..|..+    ..+.   ..
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~------~ds~LVVLtsD~~Ir~yDl~~s~-~~P~~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY------RDSCIVVLKEDDTITMFDILNSQ-EKPIVLNKPNNSFGLDARV  179 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBG------GGCEEEEEETTSCEEEEETTCTT-SCCEEESCCCSEEESCSSC
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccC------CCCeEEEEecCCEEEEEEcccCC-CCCcchhccccccCCCccc
Confidence               12233311     256799999999864      33489999999999999998732 121111    0111   11


Q ss_pred             cceeEEEcCCCCceecc
Q 019326          309 SRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       309 ~~i~~~~~s~~~~~~~~  325 (343)
                      ..|.+++|++++..+..
T Consensus       180 ~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             CCEEEEEECTTSSCEEE
T ss_pred             ceEEEEEEcCCCcEEEE
Confidence            45888999987665544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.65  E-value=0.1  Score=39.63  Aligned_cols=134  Identities=12%  Similarity=-0.028  Sum_probs=79.8

Q ss_pred             ceEEEeeCCCeEEEEECCCcce-----eeeeeec--cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee------EE
Q 019326          101 RNLFSTSADGFVSIFDADPFVL-----LTSVKVH--KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS------FY  167 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------~~  167 (343)
                      ..|+....| +++.=.......     ..+..+.  =..+..++|+|++.+.++  .+|.++-.+..+....      ..
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence            467777777 666554433321     1111222  236779999998886655  7787766665442211      11


Q ss_pred             EEc-C-CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeE------EEec--CCcceEEeeecCCCeEEEEeCCCcEEEE
Q 019326          168 HKI-G-KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLL------CELD--GKKRILCAAPGENGVLFTGGEDRSITAW  237 (343)
Q Consensus       168 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~  237 (343)
                      +.. . ..-..+.|.|++.+.++ .|+.|.-++..+....      ..+.  .=..+..+.+.++..|.+.. |+.++-.
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~  159 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA  159 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred             ecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence            110 0 11477899999999888 7898887776432111      1111  12467888888888888887 8886544


Q ss_pred             EC
Q 019326          238 DT  239 (343)
Q Consensus       238 d~  239 (343)
                      ..
T Consensus       160 ~~  161 (236)
T 1tl2_A          160 LP  161 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.48  E-value=0.33  Score=41.08  Aligned_cols=215  Identities=8%  Similarity=0.092  Sum_probs=129.5

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCC-eeeeEeccCC---C
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTS-SSLGAIHHHE---S   83 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~   83 (343)
                      ...+.|||++.            ...+..+.- ..+|.-=.|- .+.|+-.+. ..|.-|++... .+...|..|.   .
T Consensus        85 g~~lQiFnle~------------K~klks~~~-~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~  150 (494)
T 1bpo_A           85 GKTLQIFNIEM------------KSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAG  150 (494)
T ss_dssp             TTEEEEEETTT------------TEEEEEEEC-SSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTT
T ss_pred             CCeEEEEchHH------------hhhhcceec-CCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhccc
Confidence            56788888876            233333332 3456666666 666666654 56999999743 4555554431   3


Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeC-------CCeEEEEECCCcceeeeeeeccccEEEEEEecCC---CEEEEEeCC--
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSA-------DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG---KLALTVGRD--  151 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~~d--  151 (343)
                      ..|..-..+++.     ++++..+-       .|.+.+|..+. +.-+.+.+|...-..+....+.   ..++.+...  
T Consensus       151 ~QIInY~~d~~~-----kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          151 CQIINYRTDAKQ-----KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             CEEEEEEECTTS-----SEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             ceEEEEEECCCC-----CeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            566667777777     56553332       47788999876 4566777777655444433221   233434332  


Q ss_pred             -CeEEEEEccCC---c-----eeEEEEc-----CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceE
Q 019326          152 -DCLAMVNLVRG---R-----RSFYHKI-----GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRIL  215 (343)
Q Consensus       152 -~~i~~wd~~~~---~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~  215 (343)
                       +.+.+.++...   .     .......     .+.+-.+..++.-..++.. .-|.+.+||+.++.++..-+ ...+|.
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence             78889888543   1     1111111     2345678888887777777 89999999999999988766 444444


Q ss_pred             Eeeec-CCCeEEEEeCCCcEEEEECCCCc
Q 019326          216 CAAPG-ENGVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       216 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      ..+.. ..+=++.-...|.|.--.+....
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EecccCCCCcEEEEccCceEEEEEEcccc
Confidence            44443 23334444466766665555443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.41  E-value=0.036  Score=42.04  Aligned_cols=132  Identities=9%  Similarity=0.035  Sum_probs=75.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCc------eeEEEEcC--CcceEEEEeCCCCEEEEEeCCcEEEEEccccee------EEE
Q 019326          142 GKLALTVGRDDCLAMVNLVRGR------RSFYHKIG--KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKL------LCE  207 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~~  207 (343)
                      ..+|+....| +++.=....+.      ........  ..+..++|+|++.+.++ .++.+.-.+..+...      -..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence            3456666666 55443333332      11222221  46778999999997777 888877777654211      122


Q ss_pred             ec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCcee------EEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          208 LD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVA------YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       208 ~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      +.  .-....++.|.++..|+++ .||.|+-++..+...-      ..+-..-=..+..|.+.|++.          |.+
T Consensus        82 IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lya  150 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYA  150 (236)
T ss_dssp             EECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEE
T ss_pred             ecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEE
Confidence            21  1112467778766777766 6699988876432211      111101114678999999984          666


Q ss_pred             EcCCCcEE
Q 019326          280 ASSDGVIC  287 (343)
Q Consensus       280 ~~~dg~i~  287 (343)
                      .. |+.++
T Consensus       151 v~-dg~ly  157 (236)
T 1tl2_A          151 VH-GQQFY  157 (236)
T ss_dssp             EE-TTEEE
T ss_pred             Ee-CCcEE
Confidence            66 88754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.35  E-value=0.6  Score=45.81  Aligned_cols=216  Identities=12%  Similarity=0.102  Sum_probs=126.3

Q ss_pred             CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeec----cccEE
Q 019326           60 TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVH----KKGVN  134 (343)
Q Consensus        60 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~  134 (343)
                      ...++.|+|+++...+..+.-.  .+|.-=.|-...      .|+-.+ +..|+-|++.. ..++..+..|    ...|.
T Consensus        84 ag~~lQiFnl~~k~klks~~~~--e~VvfWkWis~~------~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIi  154 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLN------TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII  154 (1630)
T ss_pred             cCCeEEEeehHHhhhhcccccC--CCceEEEecCCC------eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeE
Confidence            3688999999988887777655  567777777655      455444 34799999963 3455555544    34777


Q ss_pred             EEEEecCCCEEEEEeC-------CCeEEEEEccCCceeEEEEcCCcceEEEEe---CCCCEEEEEe----CCcEEEEEcc
Q 019326          135 DLAVHHSGKLALTVGR-------DDCLAMVNLVRGRRSFYHKIGKEASLIKFD---GSGEKFFMVT----EEKVGIHQAE  200 (343)
Q Consensus       135 ~i~~~~~~~~l~~~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~i~~~d~~  200 (343)
                      .-..+++.++++..|-       .|.+.+|..+.+.......+......+.+.   +....++.+.    .+++.+.++.
T Consensus       155 nY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~  234 (1630)
T 1xi4_A          155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG  234 (1630)
T ss_pred             EeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence            7788888888776553       477888887665432222111111111111   1122333332    3678888774


Q ss_pred             cc---e-eEE----Ee--cC---CcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          201 DA---K-LLC----EL--DG---KKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       201 ~~---~-~~~----~~--~~---~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      ..   . ...    .+  +.   ..-..++..++ .+.++.-+.-|.|++||+.++.++..-+ -...+|...+......
T Consensus       235 ~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~  313 (1630)
T 1xi4_A          235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATA  313 (1630)
T ss_pred             CCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCC
Confidence            32   1 110    00  11   12233455553 4678888899999999999999887655 4445554444333222


Q ss_pred             CCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          267 GGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       267 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                               =++.....|.|.--.++..
T Consensus       314 ---------g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          314 ---------GIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             ---------ceEEEcCCceEEEEEEccc
Confidence                     2444456676666666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.06  E-value=0.51  Score=39.08  Aligned_cols=218  Identities=10%  Similarity=0.048  Sum_probs=114.5

Q ss_pred             CCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE---e----ccCCCCCeEEEEEeCC---CCCCCCceEEEeeC--
Q 019326           43 SPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA---I----HHHESSSVTSLAFYTP---QNLSVPRNLFSTSA--  108 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~---~----~~~~~~~v~~l~~~~~---~~~~~~~~l~s~~~--  108 (343)
                      .....|+|.  ++.|+.+...|.|++++.+ ++....   +    ... ......|+++|+   +.    .+.++-..  
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g-~~g~~gia~~pdf~~~g----~lYv~~~~~~   91 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHG-QGGLLDVVLAPDFAQSR----RIWLSYSEVG   91 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCST-TCSEEEEEECTTHHHHC----EEEEEEEEEC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCC-CCCceeEEECCCCCCCC----EEEEEEeCCC
Confidence            346788998  5526666778999999854 332211   1    112 356789999995   31    33333222  


Q ss_pred             -----CCeEEEEECCCc--c--eeee-eee------ccccEEEEEEecCCCEEEEEeC-------------CCeEEEEEc
Q 019326          109 -----DGFVSIFDADPF--V--LLTS-VKV------HKKGVNDLAVHHSGKLALTVGR-------------DDCLAMVNL  159 (343)
Q Consensus       109 -----dg~i~iwd~~~~--~--~~~~-~~~------~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~wd~  159 (343)
                           ...|..|++...  +  .... +..      .......|+|.|+|.+.++.+.             .|.|.-++.
T Consensus        92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence                 235666666432  1  1111 111      0112357999999976666543             246766666


Q ss_pred             cCCc------------eeEEEEcC-CcceEEEEeCCCCEEEEE-eC--CcEEEEEcccce--------------------
Q 019326          160 VRGR------------RSFYHKIG-KEASLIKFDGSGEKFFMV-TE--EKVGIHQAEDAK--------------------  203 (343)
Q Consensus       160 ~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~i~~~d~~~~~--------------------  203 (343)
                      ...-            ........ .....++|+|....++++ ..  +.=.+.-+..+.                    
T Consensus       172 dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          172 QGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             TSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            4320            11122222 346779999944445554 22  111222111111                    


Q ss_pred             -----------eEEEecCCcceEEeeec--------CCCeEEEEeCCCcEEEEECCCCceeEE--ecccccccEEEEEEE
Q 019326          204 -----------LLCELDGKKRILCAAPG--------ENGVLFTGGEDRSITAWDTNSGKVAYC--IEDAHSARVKGIVVL  262 (343)
Q Consensus       204 -----------~~~~~~~~~~i~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~h~~~v~~~~~~  262 (343)
                                 +...+.+......+.+.        .+.++++.-..+.|...++..++....  +.......+..+++.
T Consensus       252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence                       11122233345566664        245666666778888888876544332  211223478889988


Q ss_pred             ecCC
Q 019326          263 TKND  266 (343)
Q Consensus       263 ~~~~  266 (343)
                      |++.
T Consensus       332 pdG~  335 (353)
T 2g8s_A          332 PDGY  335 (353)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            8875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.72  E-value=0.72  Score=38.13  Aligned_cols=183  Identities=14%  Similarity=0.095  Sum_probs=104.6

Q ss_pred             CCCeEEEEEcCCC--eee-eEecc-----CCCCCeEEEEEeCC--CCCCCCceEEEe-eC--CCeEEEEECCCcc----e
Q 019326           60 TDDTIHLYDLSTS--SSL-GAIHH-----HESSSVTSLAFYTP--QNLSVPRNLFST-SA--DGFVSIFDADPFV----L  122 (343)
Q Consensus        60 ~dg~i~iwd~~~~--~~~-~~~~~-----~~~~~v~~l~~~~~--~~~~~~~~l~s~-~~--dg~i~iwd~~~~~----~  122 (343)
                      .+|.|.++|.++.  +.. -.+.+     . .-....+.+.++  +.    .+|+.+ ..  +.+|.+|+++...    .
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~-~f~PhGi~~~~d~dg~----~~L~Vvnh~~~~s~ielf~~d~~~~~~~~  155 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDIS-SFNPHGISTFIDDDNT----VYLLVVNHPGSSSTVEVFKFQEEEKSLLH  155 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGG-GCCEEEEEEEECTTCC----EEEEEEECSTTCCEEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcC-ceeeeeeEEEECCCCc----EEEEEEECCCCCCeEEEEEEECCCCEEEE
Confidence            6899999998742  211 11221     1 246777887663  31    234444 33  4678888775432    2


Q ss_pred             eeeeeec-cccEEEEEEecCCCEEEEEeC-----------------CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCC
Q 019326          123 LTSVKVH-KKGVNDLAVHHSGKLALTVGR-----------------DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGE  184 (343)
Q Consensus       123 ~~~~~~~-~~~v~~i~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (343)
                      +..+.+. -...+++.+.++|.+.++...                 .|.|..+|.  ++.......-...+.++|+|+++
T Consensus       156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~  233 (355)
T 3sre_A          156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGK  233 (355)
T ss_dssp             EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSS
T ss_pred             EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCC
Confidence            2333322 136789999999987776541                 244555554  33322233335678899999999


Q ss_pred             EEEEE--eCCcEEEEEccc-cee--EEEecCCcceEEeeecC--CCeEEEEeCC-CcEEEEECC--CCceeEEec
Q 019326          185 KFFMV--TEEKVGIHQAED-AKL--LCELDGKKRILCAAPGE--NGVLFTGGED-RSITAWDTN--SGKVAYCIE  249 (343)
Q Consensus       185 ~~~~~--~~~~i~~~d~~~-~~~--~~~~~~~~~i~~~~~~~--~~~l~~~~~d-g~i~i~d~~--~~~~~~~~~  249 (343)
                      .++++  ..+.|..|++.. ++.  .+.+......-.++...  +++.+++..+ +.|..|+..  .+..+.++.
T Consensus       234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            98888  578899999863 322  22333445566777764  4444444433 345555544  244444444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.59  E-value=0.79  Score=37.74  Aligned_cols=227  Identities=13%  Similarity=0.061  Sum_probs=120.3

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee--eee----eeccccEEEEEEecC---CCEEEEE---eC
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL--TSV----KVHKKGVNDLAVHHS---GKLALTV---GR  150 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~i~~~~~---~~~l~~~---~~  150 (343)
                      -.....|+|.|++     .++++--..|.|++++..+++..  ..+    .........|+++|+   +..|+..   ..
T Consensus        31 L~~P~~ia~~pdG-----~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           31 LNSPWGLAPLPGG-----DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             CSSEEEEEECTTS-----CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             CCCceEEEEcCCC-----cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            4677899999998     55555444899999987654432  111    122457889999995   3344432   24


Q ss_pred             CCeEEEEEccCC---------ceeEEEEc----CCcceEEEEeCCCCEEEEEeC--------------CcEEEEEcccc-
Q 019326          151 DDCLAMVNLVRG---------RRSFYHKI----GKEASLIKFDGSGEKFFMVTE--------------EKVGIHQAEDA-  202 (343)
Q Consensus       151 d~~i~~wd~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------~~i~~~d~~~~-  202 (343)
                      ++.|.-|.+..+         ........    .+....+.|.|++.++++..+              +.|.-++.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            556666766542         11111112    244566999999987776532              33444443321 


Q ss_pred             --------eeEEEecCCcceEEeeecCCCeEEEEeC--CCcEEEEECCCC------------------ceeEEecccccc
Q 019326          203 --------KLLCELDGKKRILCAAPGENGVLFTGGE--DRSITAWDTNSG------------------KVAYCIEDAHSA  254 (343)
Q Consensus       203 --------~~~~~~~~~~~i~~~~~~~~~~l~~~~~--dg~i~i~d~~~~------------------~~~~~~~~~h~~  254 (343)
                              ..+....+ .....++|++...|+++..  ++.=.|--+..+                  .++..+. .+..
T Consensus       186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~~  263 (347)
T 3das_A          186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TDEA  263 (347)
T ss_dssp             CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TTTC
T ss_pred             cCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC-CCCC
Confidence                    01111112 2234566664444444432  221122111111                  1233333 2224


Q ss_pred             cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc-cCCCcccccccccceeEEEcCCCCceecccc
Q 019326          255 RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK-EKPLPLAEAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      ....++|... .         ++...-..+.|....+..... .....+.. ....++..++..||+.+.+...
T Consensus       264 ap~G~~~~~g-~---------~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~-~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYAEG-S---------VWMAGLRGERLWRIPLKGTAAAADPQAFLE-GEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEETT-E---------EEEEESTTCSEEEEEEETTEESSCCEEEST-TTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEcC-c---------eeeccccCCEEEEEEecCCceecceEEeec-CCCCCccEEEECCCCcEEEEEc
Confidence            6677887642 2         566655566776667765431 11111111 1346899999999998877654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.36  E-value=1.6  Score=39.87  Aligned_cols=154  Identities=12%  Similarity=0.053  Sum_probs=82.1

Q ss_pred             eEEEEe--cCceEEEeeCC------CeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eE
Q 019326           45 ITTVAV--SGTAAASGGTD------DTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FV  112 (343)
Q Consensus        45 v~~l~~--~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i  112 (343)
                      -.++.+  .+..++.|+.+      ..+.+||..+.+-..  .+... ... .+.+...++     ..++.|+.++  .+
T Consensus       443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~-R~~-h~~~~~~~~-----~iyv~GG~~~~~~v  515 (695)
T 2zwa_A          443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT-RFR-HSACSLPDG-----NVLILGGVTEGPAM  515 (695)
T ss_dssp             CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC-CBS-CEEEECTTS-----CEEEECCBCSSCSE
T ss_pred             eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC-ccc-ceEEEEcCC-----EEEEECCCCCCCCE
Confidence            345556  56677777654      357889988754322  22211 111 223332355     6788888755  68


Q ss_pred             EEEECCCcce--eee---eeeccccEEEEEEecC-CCEEEEEeC--C-----CeEEEEEccCCc------eeEEEEc---
Q 019326          113 SIFDADPFVL--LTS---VKVHKKGVNDLAVHHS-GKLALTVGR--D-----DCLAMVNLVRGR------RSFYHKI---  170 (343)
Q Consensus       113 ~iwd~~~~~~--~~~---~~~~~~~v~~i~~~~~-~~~l~~~~~--d-----~~i~~wd~~~~~------~~~~~~~---  170 (343)
                      .+||..+.+-  +..   +........++.+..+ ++.++.|+.  +     +.+..||+.+..      -......   
T Consensus       516 ~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~  595 (695)
T 2zwa_A          516 LLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF  595 (695)
T ss_dssp             EEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG
T ss_pred             EEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC
Confidence            9999876432  111   1111112233455555 567777765  2     468899998877      2222221   


Q ss_pred             CCcceEEEEeCCCCEEEEE-e--------CCcEEEEEcccceeE
Q 019326          171 GKEASLIKFDGSGEKFFMV-T--------EEKVGIHQAEDAKLL  205 (343)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~-~--------~~~i~~~d~~~~~~~  205 (343)
                      +..-..+....++..++.+ .        ...+.+||+.+.+-.
T Consensus       596 ~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          596 QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            1122233333335555555 2        245888998876544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.18  E-value=1.9  Score=39.49  Aligned_cols=188  Identities=12%  Similarity=0.072  Sum_probs=102.1

Q ss_pred             ecCceEEEeeCC----CeEEEEEcCCCeeeeEe-c-----cCCCCCeEEEEEeC-CCCCCCCceEEEeeCC------CeE
Q 019326           50 VSGTAAASGGTD----DTIHLYDLSTSSSLGAI-H-----HHESSSVTSLAFYT-PQNLSVPRNLFSTSAD------GFV  112 (343)
Q Consensus        50 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~l~~~~-~~~~~~~~~l~s~~~d------g~i  112 (343)
                      ..+..++.|+.+    ..+.+||..+++-...- .     ......-.+++..+ ++     ..++.|+.+      ..+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-----~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-----QLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-----EEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-----EEEEEcCCCCCCCccccE
Confidence            446677777753    45888998877543322 1     11011123344443 55     577777754      357


Q ss_pred             EEEECCCc--ceeeeeeeccccEEEEEEecCCCEEEEEeCCC--eEEEEEccCCceeEEEE---cC---CcceEEEEeCC
Q 019326          113 SIFDADPF--VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD--CLAMVNLVRGRRSFYHK---IG---KEASLIKFDGS  182 (343)
Q Consensus       113 ~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~---~~---~~~~~~~~~~~  182 (343)
                      .+||..+.  +.+..+......- +.+...+++.++.|+.++  .+.+||..+..-.....   .+   .....+.+..+
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             EEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            88998763  3332222111121 222323778888887654  68999998876433322   11   11233555655


Q ss_pred             -CCEEEEE-e--C-----CcEEEEEccccee-----EEEec-----CCcceEEeeecCCCeEEEEeC--------CCcEE
Q 019326          183 -GEKFFMV-T--E-----EKVGIHQAEDAKL-----LCELD-----GKKRILCAAPGENGVLFTGGE--------DRSIT  235 (343)
Q Consensus       183 -~~~~~~~-~--~-----~~i~~~d~~~~~~-----~~~~~-----~~~~i~~~~~~~~~~l~~~~~--------dg~i~  235 (343)
                       +..++.+ .  +     +.+.+||+.+...     ...+.     ......++.+.++.+++.|+.        ...+.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5555555 2  2     3588999887761     22221     122223333423677777774        34589


Q ss_pred             EEECCCCc
Q 019326          236 AWDTNSGK  243 (343)
Q Consensus       236 i~d~~~~~  243 (343)
                      +||+.+.+
T Consensus       630 ~yd~~t~~  637 (695)
T 2zwa_A          630 SLDPLSET  637 (695)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCe
Confidence            99998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.10  E-value=1.8  Score=42.70  Aligned_cols=193  Identities=9%  Similarity=0.107  Sum_probs=105.0

Q ss_pred             CCeEEEEec-CceEEEeeCCCeEEEEEcCCC-eeeeEeccCC---CCCeEEEEEeCCCCCCCCceEEEee-------CCC
Q 019326           43 SPITTVAVS-GTAAASGGTDDTIHLYDLSTS-SSLGAIHHHE---SSSVTSLAFYTPQNLSVPRNLFSTS-------ADG  110 (343)
Q Consensus        43 ~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~~~v~~l~~~~~~~~~~~~~l~s~~-------~dg  110 (343)
                      .+|.-=.|- .+.|+-.+. ..|.-|++... .+...|..|.   ...|..-..+++.     ++++..+       -.|
T Consensus       106 e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~-----kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          106 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ-----KWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCC-----CeEEEEeeccCCCcccc
Confidence            456655665 566665553 56999999742 3444443331   3456666667776     5555333       357


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEe--cCC-CEEEEEeC---CCeEEEEEccCC---ceeEE-----EEc-----C
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVH--HSG-KLALTVGR---DDCLAMVNLVRG---RRSFY-----HKI-----G  171 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~-~~l~~~~~---d~~i~~wd~~~~---~~~~~-----~~~-----~  171 (343)
                      .+.+|..+. +.-+.+.+|.+.-..+...  +.. ..++.+..   .+.+.+.++...   .....     ...     .
T Consensus       180 ~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~  258 (1630)
T 1xi4_A          180 AMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (1630)
T ss_pred             eeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccccc
Confidence            889998866 3445566665543333332  111 22222222   267888887543   11110     111     2


Q ss_pred             CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCC
Q 019326          172 KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~  242 (343)
                      ..+..+..++.-..+... .-|.+.+||+.++.++..-+ ...+|...+.. +.+-++.....|.|.--.+...
T Consensus       259 Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             CcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            334557777766666666 89999999999998876655 33334333333 2222333335555555444433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.95  E-value=1.3  Score=36.48  Aligned_cols=223  Identities=12%  Similarity=0.077  Sum_probs=120.8

Q ss_pred             EecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee--eeEe----ccCCCCCeEEEEEeCC---CCCCCCceEEE
Q 019326           37 SYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS--LGAI----HHHESSSVTSLAFYTP---QNLSVPRNLFS  105 (343)
Q Consensus        37 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~~v~~l~~~~~---~~~~~~~~l~s  105 (343)
                      .+...-.....|+|.  |.++++--..|.|++++..+++.  +..+    ... ......|+++|+   +     ..|..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~-----g~lYv   99 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASD-----HMVYA   99 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHH-----CEEEE
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccC-----CEEEE
Confidence            333445567899997  55555544489999998765543  2212    122 467899999985   2     24443


Q ss_pred             e---eCCCeEEEEECCCc----------cee-eeeee-ccccEEEEEEecCCCEEEEEeC-------------CCeEEEE
Q 019326          106 T---SADGFVSIFDADPF----------VLL-TSVKV-HKKGVNDLAVHHSGKLALTVGR-------------DDCLAMV  157 (343)
Q Consensus       106 ~---~~dg~i~iwd~~~~----------~~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~-------------d~~i~~w  157 (343)
                      .   ..++.|.-|.+...          +.+ ..+.. ....-..|+|.|+|.+.++.+.             .|.|.-.
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            2   23456666665441          111 11211 1113456999999987777653             2444444


Q ss_pred             EccCCc-------eeEEEEcC-CcceEEEEeCCCCEEEEE--eCCcEEEEEcccce------------------eEEEec
Q 019326          158 NLVRGR-------RSFYHKIG-KEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK------------------LLCELD  209 (343)
Q Consensus       158 d~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~------------------~~~~~~  209 (343)
                      +....-       ........ .....++|+|++.++++-  .++.-.+.-+..+.                  ++..+.
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~  259 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS  259 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC
T ss_pred             eCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC
Confidence            443210       01122222 345679999987766555  23222332222221                  122222


Q ss_pred             CC-cceEEeeecCCCeEEEEeCCCcEEEEECCCCce----eEEecccccccEEEEEEEecCC
Q 019326          210 GK-KRILCAAPGENGVLFTGGEDRSITAWDTNSGKV----AYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       210 ~~-~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +. .....++|..+.++...-..+.|....+.....    ...+. +....+..|+..|++.
T Consensus       260 ~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~-~~~gR~~dv~~~pDG~  320 (347)
T 3das_A          260 TDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLE-GEYGRLRTVAPAGGDK  320 (347)
T ss_dssp             TTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEEST-TTSSCEEEEEEEETTE
T ss_pred             CCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeec-CCCCCccEEEECCCCc
Confidence            22 355667776666666666667777777654432    22233 4446788999888875

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.85  E-value=1.2  Score=35.53  Aligned_cols=204  Identities=15%  Similarity=0.054  Sum_probs=107.5

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecC-ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSG-TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      ||.|+.|-.......       - .+.    .....|..++... ..++. . ||.|..|-....-.+..-..- ...|.
T Consensus        41 ~G~v~~wG~n~~Gql-------g-~p~----~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~-~~~v~  105 (282)
T 3qhy_B           41 GGKVLGWGANLNGQL-------T-MPA----ATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEA-RSGVD  105 (282)
T ss_dssp             TTEEEEEECCSSSTT-------S-CCG----GGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGG-SSSEE
T ss_pred             CCEEEEEeCCCCCCC-------C-CCc----cCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCccc-CCCeE
Confidence            889999876542111       0 011    1123677777773 34444 4 899999976543222211112 35788


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE-
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF-  166 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-  166 (343)
                      .++.....       .+.-. ||.|+.|-....-.+..-......|..++.....  .+.-. ||.++.|-.....++. 
T Consensus       106 ~ia~G~~h-------s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~  174 (282)
T 3qhy_B          106 AIAAGAWA-------SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTV  174 (282)
T ss_dssp             EEEEETTE-------EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSC
T ss_pred             EEECcCCE-------EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCC
Confidence            88876553       33344 9999999865422221111123457777665443  23333 7999999765432221 


Q ss_pred             EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeE-EEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCC
Q 019326          167 YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLL-CELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSG  242 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~  242 (343)
                      .......+..++...... ++. .++.+..|-......+ ...+....|..++......++..  ||.|+.|-....
T Consensus       175 p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          175 PAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             CGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTTCC
T ss_pred             ceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCCCC
Confidence            111123444454433222 333 7888888865432111 11112234666666444444444  999999976543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.34  E-value=3.9  Score=35.95  Aligned_cols=230  Identities=11%  Similarity=0.059  Sum_probs=135.3

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCC------------------------CCCeEEEEEeCCCCCCCCceEEEeeC-
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHE------------------------SSSVTSLAFYTPQNLSVPRNLFSTSA-  108 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~v~~l~~~~~~~~~~~~~l~s~~~-  108 (343)
                      .|.||+..|.|+|+-+.+++.+..+.-..                        .+....-.+|....-.++++|+.-.. 
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            38899999999999999998877663110                        11111112221111123467777764 


Q ss_pred             CCeEEEEECCCcceeeeeeec-cccEEEEEEe--cCCCEEEEEeC-------CCeE------------EEEEccCCceeE
Q 019326          109 DGFVSIFDADPFVLLTSVKVH-KKGVNDLAVH--HSGKLALTVGR-------DDCL------------AMVNLVRGRRSF  166 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~l~~~~~-------d~~i------------~~wd~~~~~~~~  166 (343)
                      +..|...+++.+++-+.+... ...+..++|.  |+..+++.++.       ||..            ...|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            567888899888877766543 3467788886  67778887775       2221            112334444444


Q ss_pred             EEEcCCcceEEEEeCCCCEEEEEeCC----------------cEEEEEccc-------ce-------eEEEec-------
Q 019326          167 YHKIGKEASLIKFDGSGEKFFMVTEE----------------KVGIHQAED-------AK-------LLCELD-------  209 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~i~~~d~~~-------~~-------~~~~~~-------  209 (343)
                      +...+.....+...+++.+.++.+-+                .+.++++..       ++       -+..+.       
T Consensus       232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~  311 (638)
T 3sbq_A          232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK  311 (638)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred             EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence            44445555556667788877766211                155555431       11       011221       


Q ss_pred             ---------CCcceEEeeec-CCCeEE-EEeCCCcEEEEECCCC------ce-------eEEecccccccEEEEEEEecC
Q 019326          210 ---------GKKRILCAAPG-ENGVLF-TGGEDRSITAWDTNSG------KV-------AYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       210 ---------~~~~i~~~~~~-~~~~l~-~~~~dg~i~i~d~~~~------~~-------~~~~~~~h~~~v~~~~~~~~~  265 (343)
                               -......+..+ ++++++ +|-.+.++.++|+++.      +.       ..+.+  -.......+|.+++
T Consensus       312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G  389 (638)
T 3sbq_A          312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRG  389 (638)
T ss_dssp             CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSS
T ss_pred             CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCC
Confidence                     11122233444 455555 4556889999998742      11       22333  34566778888876


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .         ...|.-.|..|.-|++...
T Consensus       390 ~---------aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          390 N---------AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             E---------EEEEETTTTEEEEEEHHHH
T ss_pred             c---------eEeeeeecceEEEEeccHH
Confidence            4         6667778999999999864

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.74  E-value=5.8  Score=34.05  Aligned_cols=59  Identities=12%  Similarity=0.058  Sum_probs=39.3

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---------CcceEEEEeCC---CCEEEEE
Q 019326          131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---------KEASLIKFDGS---GEKFFMV  189 (343)
Q Consensus       131 ~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~  189 (343)
                      ...+.|+|.|+|+++++-...+.|++++..+++........         .....++++|+   +..|+++
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            35679999999987776554457888876656543333322         23457999996   6666665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.42  E-value=12  Score=35.59  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=34.1

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc
Q 019326          132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       132 ~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  170 (343)
                      .+.+++..++..++++.+.|+++++|++.+++++.....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            567788888888999999999999999999998877665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.73  E-value=12  Score=31.98  Aligned_cols=103  Identities=11%  Similarity=0.108  Sum_probs=57.2

Q ss_pred             CCCeEEEEec--CceEEEeeCC-CeEEEEEcCCCeee--eEecc-----CCCCCeEEEEEeCC---CCCCCCceEEEee-
Q 019326           42 LSPITTVAVS--GTAAASGGTD-DTIHLYDLSTSSSL--GAIHH-----HESSSVTSLAFYTP---QNLSVPRNLFSTS-  107 (343)
Q Consensus        42 ~~~v~~l~~~--~~~l~s~~~d-g~i~iwd~~~~~~~--~~~~~-----~~~~~v~~l~~~~~---~~~~~~~~l~s~~-  107 (343)
                      -.....|+|.  |+++++ ... +.|++++..+++..  ..+..     ........|+|+|+   +     ..|.... 
T Consensus        26 l~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-----g~lYv~~s   99 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-----PYIYISGT   99 (454)
T ss_dssp             CSSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-----CEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-----CEEEEEEe
Confidence            3456789998  555554 555 47888876555432  22221     01466789999995   3     2444333 


Q ss_pred             C------------CCeEEEEECCCc-------ceee-eeee-ccccEEEEEEecCCCEEEEEeC
Q 019326          108 A------------DGFVSIFDADPF-------VLLT-SVKV-HKKGVNDLAVHHSGKLALTVGR  150 (343)
Q Consensus       108 ~------------dg~i~iwd~~~~-------~~~~-~~~~-~~~~v~~i~~~~~~~~l~~~~~  150 (343)
                      .            ...|.-++....       +.+. .+.. .......|+|.|+|.+.++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            2            234555554321       1111 1211 1124688999999987777654

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=86.12  E-value=14  Score=31.01  Aligned_cols=266  Identities=9%  Similarity=0.011  Sum_probs=130.8

Q ss_pred             EeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCC-CeEEEEEcCCC-e---------
Q 019326            5 AGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTD-DTIHLYDLSTS-S---------   73 (343)
Q Consensus         5 ~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d-g~i~iwd~~~~-~---------   73 (343)
                      +-..||.|+.|=.......-.........+..........|..++......+.-..+ +.|..|-.... +         
T Consensus        30 al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~  109 (406)
T 4d9s_A           30 ALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDL  109 (406)
T ss_dssp             EEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCE
T ss_pred             EEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCcc
Confidence            344688888886543211000000011122111111234688888775554444455 59999954321 0         


Q ss_pred             -eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-ce----------eeeeee-ccccEEEEEEec
Q 019326           74 -SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-VL----------LTSVKV-HKKGVNDLAVHH  140 (343)
Q Consensus        74 -~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~----------~~~~~~-~~~~v~~i~~~~  140 (343)
                       ....+.......|..++.-.       ...++-..+|.|+.|-.... ++          ...+.. ....|..++...
T Consensus       110 ~~p~~v~~l~~~~i~~ia~G~-------~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~  182 (406)
T 4d9s_A          110 FTPLPIKALHGIRIKQIACGD-------SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA  182 (406)
T ss_dssp             EEEEECGGGTTCCEEEEEECS-------SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS
T ss_pred             ccceEecccCCCCEEEEEECh-------hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC
Confidence             01111222134677777643       35666678999999975321 10          011111 112566666543


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCc---------eeEEEEcC----CcceEEEEeCCCCEEEEE-eCCcEEEEEcccc----
Q 019326          141 SGKLALTVGRDDCLAMVNLVRGR---------RSFYHKIG----KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA----  202 (343)
Q Consensus       141 ~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~----  202 (343)
                        .+.+....+|.|+.|-.....         ........    ..+..++  ....+.++. .++.+..|-....    
T Consensus       183 --~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va--~G~~ht~~l~~~G~v~~wG~n~~GqlG  258 (406)
T 4d9s_A          183 --EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVA--CGWRHTISVSYSGALYTYGWSKYGQLG  258 (406)
T ss_dssp             --SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEE--ECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred             --CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEE--ECCCcEEEEcCCCCEEEeeCCCCCCCC
Confidence              456666789999999643211         11111111    2232232  223333333 7788888754321    


Q ss_pred             -------eeEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC-c----------eeEEecccccccEEEEEEE
Q 019326          203 -------KLLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG-K----------VAYCIEDAHSARVKGIVVL  262 (343)
Q Consensus       203 -------~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~----------~~~~~~~~h~~~v~~~~~~  262 (343)
                             .....+.  ....|..++. .....++-..||.|+.|=.... +          ....+.......|..++.-
T Consensus       259 ~g~~~~~~~p~~v~~~~~~~v~~i~~-G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G  337 (406)
T 4d9s_A          259 HGDLEDHLIPHKLEALSNSFISQISG-GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG  337 (406)
T ss_dssp             SSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC
T ss_pred             CCCCcCccccEEecccCCCCEEEEEe-cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC
Confidence                   1111121  2234666665 3445555578999999965431 1          1112221233456666543


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      ..           +.+.-..||.|..|=...
T Consensus       338 ~~-----------hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          338 WR-----------HTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             SS-----------EEEEEETTSCEEEEECCT
T ss_pred             CC-----------eEEEEeCCCCEEEecCCC
Confidence            33           566667899999997654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.29  E-value=13  Score=29.80  Aligned_cols=160  Identities=8%  Similarity=0.068  Sum_probs=82.2

Q ss_pred             CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC--------------CeEEEEEccCCceeEEEEcCCcc
Q 019326          109 DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD--------------DCLAMVNLVRGRRSFYHKIGKEA  174 (343)
Q Consensus       109 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------------~~i~~wd~~~~~~~~~~~~~~~~  174 (343)
                      ++.|...+.+... ...+...  .  +--+++++.+|+-+...              ..|+..++..++......  .  
T Consensus        36 ~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~--  106 (302)
T 3s25_A           36 NGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--D--  106 (302)
T ss_dssp             TTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--S--
T ss_pred             CceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--C--
Confidence            5566666665433 3333321  1  23457788777766543              357777777665333222  1  


Q ss_pred             eEEEEeCCCCEEEEEe---CCc--EEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          175 SLIKFDGSGEKFFMVT---EEK--VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~~---~~~--i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                      ....++++++.++-..   ++.  |...++......+...+..  ..+.+..+.+.++......|...++..+.....+.
T Consensus       107 ~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred             CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence            1236777888888764   444  4444554333322222322  23344334444555556789998887655433333


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCC--CcEEEEeccC
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASASSD--GVICVWDVRM  293 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~  293 (343)
                       +   ... ..+.|.+.         +|+-...+  ..|..-++..
T Consensus       185 -~---~~~-~~~~P~g~---------~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          185 -C---NCY-KPVVLDDT---------NVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             -S---CEE-EEEEEETT---------EEEEEEGGGTTEEEEECSSS
T ss_pred             -C---Ccc-ceeeecCC---------EEEEEEcCCCcEEEEEECCC
Confidence             2   112 23557766         66554433  2444445544

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=85.13  E-value=15  Score=30.55  Aligned_cols=270  Identities=11%  Similarity=0.061  Sum_probs=132.6

Q ss_pred             eEEeccCCeEEEEEeecCCCCCC-CCcc-eeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCC--------
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSS-DQKT-LTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTS--------   72 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~-~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~--------   72 (343)
                      ++.-..||.|+.|=.......-. .... ....++..+.  ...|..++......+.-..||.|..|-....        
T Consensus        13 ~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~   90 (389)
T 3kci_A           13 NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALA--TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT   90 (389)
T ss_dssp             --------CEEEEEECTTSTTSSCSCSEEEEEEECHHHH--HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS
T ss_pred             ceeECCCCeEEEeeCCCCccCCCCcCccccCCEeccccc--CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc
Confidence            34556789999997654221100 0000 0111111111  2245566655666677778999999964321        


Q ss_pred             ---eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc-c----------eeeeeee-ccccEEEEE
Q 019326           73 ---SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF-V----------LLTSVKV-HKKGVNDLA  137 (343)
Q Consensus        73 ---~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~----------~~~~~~~-~~~~v~~i~  137 (343)
                         .....+.......+..++++...     ...++-..||.|+.|-.... +          ....+.. ....|..++
T Consensus        91 ~~~~~p~~v~~~~~~~~~~v~i~~G~-----~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va  165 (389)
T 3kci_A           91 ESVSTPTLLESIQHVFIKKVAVNSGG-----KHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA  165 (389)
T ss_dssp             CCEEEEEECGGGTTSCEEEEEECTTC-----SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred             CCccCCEEcccccCCceeEEEECcCC-----CeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence               11112222213345556665554     56777788999999965321 0          0011111 112566666


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCC-c--------eeEEEEc----CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc-
Q 019326          138 VHHSGKLALTVGRDDCLAMVNLVRG-R--------RSFYHKI----GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA-  202 (343)
Q Consensus       138 ~~~~~~~l~~~~~d~~i~~wd~~~~-~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~-  202 (343)
                      ..  ..+.+....+|.|+.|-.... +        .......    ...+..++........++. .++.+..|-.... 
T Consensus       166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G  243 (389)
T 3kci_A          166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG  243 (389)
T ss_dssp             EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred             eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence            54  346666678999999965321 1        1111111    1234444443322444444 8899999864421 


Q ss_pred             e----------eEEEec--CCcceEEeeecCCCeEEEEeCCCcEEEEECCCC-----------ceeEEecccccccEEEE
Q 019326          203 K----------LLCELD--GKKRILCAAPGENGVLFTGGEDRSITAWDTNSG-----------KVAYCIEDAHSARVKGI  259 (343)
Q Consensus       203 ~----------~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~h~~~v~~~  259 (343)
                      +          ....+.  ....|..++. .....++-..+|.|+.|-....           .....+.......|..+
T Consensus       244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~-G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i  322 (389)
T 3kci_A          244 KLGRGGSDGCKVPMKIDSLTGLGVVKVEC-GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI  322 (389)
T ss_dssp             TTSSSSCCCEEEEEECGGGTTSCEEEEEE-ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEE
T ss_pred             CCCCCCCCCccccEEecccCCCcEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEE
Confidence            1          111122  2234666665 3344445578999999965321           11222221122346666


Q ss_pred             EEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          260 VVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       260 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      +....           +.+....||.|..|=...
T Consensus       323 a~G~~-----------h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          323 ATGSL-----------HCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EECSS-----------EEEEEETTCCEEEEECCT
T ss_pred             EeccC-----------eEEEECCCCCEEEeeCCC
Confidence            54333           566667899999997654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.10  E-value=13  Score=35.37  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=32.5

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK  127 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  127 (343)
                      ..+.+++..++.     .++++-+.|+++++|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~~-----~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTY-----NVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTT-----TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCC-----cEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356777777776     799999999999999999999887754

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.62  E-value=16  Score=29.63  Aligned_cols=112  Identities=12%  Similarity=0.099  Sum_probs=71.8

Q ss_pred             CCCeEEEE-ec----CceEEEeeCCCeEEEEEcCCCe-------eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC
Q 019326           42 LSPITTVA-VS----GTAAASGGTDDTIHLYDLSTSS-------SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD  109 (343)
Q Consensus        42 ~~~v~~l~-~~----~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d  109 (343)
                      ...|.++. ..    ..+++..+.+|.++.-.+..-.       ..-.+...  ..+..+......     ..++..+..
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~--D~lv~~~~~~~~-----d~ill~T~~  166 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN--DELVGAVLCSAG-----DDLLLVSAN  166 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT--CCEEEEEEECTT-----CEEEEEETT
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC--CEEEEEEEecCC-----CEEEEEECC
Confidence            34455543 32    5689999999999998875422       22233333  556555555444     578888999


Q ss_pred             CeEEEEECC--Ccce---------eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326          110 GFVSIFDAD--PFVL---------LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus       110 g~i~iwd~~--~~~~---------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                      |.+..+...  .-..         .-.+. ....|.++...+++..++..+..|.++.-.+..
T Consensus       167 G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          167 GQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             SEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             CeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence            998888776  3211         11122 234677776666667899999999999887653

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=83.60  E-value=16  Score=29.40  Aligned_cols=179  Identities=11%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceeE---------EEEcCCcceE-EEEeCCCCEEEEEeCCcEEEEEcc---c------
Q 019326          141 SGKLALTVGRDDCLAMVNLVRGRRSF---------YHKIGKEASL-IKFDGSGEKFFMVTEEKVGIHQAE---D------  201 (343)
Q Consensus       141 ~~~~l~~~~~d~~i~~wd~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~---~------  201 (343)
                      +..++++.+.+|.|+--.+..-+...         .......+.. +..+.....++....|.+.-+...   .      
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~   81 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR   81 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence            45577888888888776664422111         1112233333 333444445555577776655442   2      


Q ss_pred             ceeEE---EecCCcceEEeee----cCCCeEEEEeCCCcEEEEECCC-------CceeEEecccccccEEEEEEEecCCC
Q 019326          202 AKLLC---ELDGKKRILCAAP----GENGVLFTGGEDRSITAWDTNS-------GKVAYCIEDAHSARVKGIVVLTKNDG  267 (343)
Q Consensus       202 ~~~~~---~~~~~~~i~~~~~----~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~  267 (343)
                      |.++.   .+.....|..+..    .++.+++..+..|.++.-.+..       +.....+. .+ +.+-.+......+ 
T Consensus        82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~-~~-d~lv~~~~~~~~~-  158 (307)
T 1zi0_A           82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV-DG-DELIGVDLTSGED-  158 (307)
T ss_dssp             CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC-TT-CCEEEEEEECTTC-
T ss_pred             CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC-CC-CEEEEEEEeCCCC-
Confidence            22111   2334445665543    2456788999999999987642       22222333 23 5555555544443 


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCccc----cCCCcccccccccceeEEEcCCCCceeccccCCC
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAIK----EKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDS  330 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~  330 (343)
                              .++..+.+|.+..++...-..    ...........+..|.++...++...++..+..+
T Consensus       159 --------~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G  217 (307)
T 1zi0_A          159 --------EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNG  217 (307)
T ss_dssp             --------EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTS
T ss_pred             --------EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCC
Confidence                    688888899988888764311    1111222334455677766554444333334433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	343
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 44/320 (13%), Positives = 92/320 (28%), Gaps = 74/320 (23%)

Query: 34  QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSL-- 89
           + ++   H SP+T V      +   S   D TI ++D  T      +  H + SV  +  
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISF 67

Query: 90  -----------------------------------AFYTPQNLSVPRNLFSTSADGFVSI 114
                                                 +   +    ++ S S D  + +
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 115 FDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL--------VRGRRSF 166
           ++      + +   H++ V  +  +  G L  +   D  + +  +        +R  R  
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 167 YHKI------------GKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDG-K 211
              I                S  K  G    F +    ++ + +        L  L G  
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247

Query: 212 KRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGST 270
             +        G  + +  +D+++  WD  + +    +  AH   V  +           
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAP---- 302

Query: 271 AENPYLVASASSDGVICVWD 290
                 V + S D  + VW+
Sbjct: 303 -----YVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 39/203 (19%)

Query: 98  SVPRNLFSTSADGFVSIFDADPFVLLTSVKV-------HKKGVNDLAVHHSGKLALTVGR 150
              + + + S D  V ++D++   L+  +         HK  V  +     G+  ++   
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 151 DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDG 210
           D  + + NL                                             +  +  
Sbjct: 275 DRSVKLWNLQNANNKSDS---------------------------KTPNSGTCEVTYIGH 307

Query: 211 KKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGS 269
           K  +L  A  +N   + +G +DR +  WD  SG     ++  H   V  + V    +G S
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAV---ANGSS 363

Query: 270 TAENPYLVASASSDGVICVWDVR 292
                 + A+ S D    +W  +
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 37/288 (12%), Positives = 83/288 (28%), Gaps = 51/288 (17%)

Query: 41  HLSPITTVAVS-----GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE---SSSVTSLAFY 92
           H  PI    +         A    T+D   LY+ +    +    H     +S V  + F 
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF- 70

Query: 93  TPQNLSVPRNLFSTSADGFVSIFDADPFVLL------------------TSVKVHKKGVN 134
                S      +T  +    ++      L+                  +S       + 
Sbjct: 71  -----SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 135 DLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKV 194
            +     GK   T   D  + + ++   +     +  ++              +      
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

Query: 195 GIHQAE----DAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIED 250
            +   +       L   ++     +  +PG+   +  G  DR++  WD+ +G +   ++ 
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 251 ------AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
                  H   V  +V            +   V S S D  + +W+++
Sbjct: 246 ENESGTGHKDSVYSVVF---------TRDGQSVVSGSLDRSVKLWNLQ 284

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 29/168 (17%)

Query: 3   LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT 60
           + AGS ++ +  +  +              ++  S   H   + +V  +  G +  SG  
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLD-----SENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 61  DDTIHLYDLSTSSSLG-----------AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD 109
           D ++ L++L  +++               +      V S+A            + S S D
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-----ILSGSKD 329

Query: 110 GFVSIFDADPFVLLTSVKVHKKGVNDLAV------HHSGKLALTVGRD 151
             V  +D      L  ++ H+  V  +AV           +  T   D
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 31  TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHL-YDLSTSSSLGAIHHHESSSVT 87
                 ++  H S I  +     G A A+G  D T  L    +    +   H +    +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 88  SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALT 147
           S++F     L     L +   D   +++DA        +  H   V+ L V   G    T
Sbjct: 275 SVSFSKSGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329

Query: 148 VGRDDCL 154
              D  L
Sbjct: 330 GSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 8e-11
 Identities = 26/188 (13%), Positives = 54/188 (28%), Gaps = 48/188 (25%)

Query: 104 FSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGR 163
            S + D    ++D    +   +   H+  +N +    +G    T   D    + +L   +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 164 RSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENG 223
               +                                        +    I   +  ++G
Sbjct: 260 ELMTY-------------------------------------SHDNIICGITSVSFSKSG 282

Query: 224 -VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
            +L  G +D +   WD      A  +   H  RV  + V          ++   VA+ S 
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGV---------TDDGMAVATGSW 332

Query: 283 DGVICVWD 290
           D  + +W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 39/288 (13%), Positives = 82/288 (28%), Gaps = 13/288 (4%)

Query: 9   EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHL 66
            K      L    +       + +    +   HL+ I  +          S   D  + +
Sbjct: 22  RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLII 81

Query: 67  YDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV 126
           +D  T++ + AI    SS V + A+    N      L +  +   +   + +  V     
Sbjct: 82  WDSYTTNKVHAIPLR-SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140

Query: 127 KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKF 186
                      +  +  +  +      L  +   +   +F    G   SL     +    
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200

Query: 187 FMVTEEKVGIHQAEDAKLLCELDG-KKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKV 244
               +    +    +        G +  I       NG    TG +D +   +D  + + 
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 245 AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
                  +   + GI  ++ +  G       L+ +   D    VWD  
Sbjct: 261 LMTYSHDN--IICGITSVSFSKSGR------LLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 3   LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT 60
              GS +     + L+                 +S+   +  IT+V+ S  G    +G  
Sbjct: 241 FATGSDDATCRLFDLRADQEL----------MTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 61  DDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD 116
           D   +++D   +   G +  H  + V+ L             + + S D F+ I++
Sbjct: 291 DFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMA-----VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 31/218 (14%), Positives = 60/218 (27%), Gaps = 22/218 (10%)

Query: 83  SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG 142
            + + ++ + T   L     L S S DG + I+D+     + ++ +    V   A   SG
Sbjct: 55  LAKIYAMHWGTDSRL-----LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 143 KLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEE-------KVG 195
                 G D+  ++ NL     +                                   + 
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 196 IHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR 255
             +               +  +   +  +  +G  D S   WD   G         H + 
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESD 228

Query: 256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM 293
           +  I             N    A+ S D    ++D+R 
Sbjct: 229 INAICF---------FPNGNAFATGSDDATCRLFDLRA 257

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 23/267 (8%)

Query: 28  KTLTLTQLFSYPAHLSPITT-VAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSV 86
           +   L        H   + T +   G    SG  D+T+ ++   T   L  +  H +  V
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGV 60

Query: 87  TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLAL 146
            S        +S   +      +          +   ++V+           H   K  +
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---------HLHEKRVV 111

Query: 147 TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLC 206
           +  RD  L + ++  G+          A                +  V +   E    L 
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171

Query: 207 ELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND 266
            L G    + +   +   + +G  D SI  WD  +G   + +    S             
Sbjct: 172 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS---------- 221

Query: 267 GGSTAENPYLVASASSDGVICVWDVRM 293
                    ++ S ++D  + +WD++ 
Sbjct: 222 --GMELKDNILVSGNADSTVKIWDIKT 246

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 60/241 (24%)

Query: 56  ASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIF 115
            SG  D  + ++D  T + L  +  H                    ++ S S D  + ++
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHT--------NRVYSLQFDGIHVVSGSLDTSIRVW 202

Query: 116 DADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEAS 175
           D +    + ++  H+   +   +     + ++   D  + + ++  G+     +   +  
Sbjct: 203 DVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 176 LIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSIT 235
                    K F++T                                       +D ++ 
Sbjct: 261 SAVTCLQFNKNFVIT-------------------------------------SSDDGTVK 283

Query: 236 AWDTNSGKVAYCIEDAHSARVKGIV--VLTKNDGGSTAENPYLVASASSDG----VICVW 289
            WD  +G+    +    S    G+V  +   N          + A  S +G     + V 
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-------LVCAVGSRNGTEETKLLVL 336

Query: 290 D 290
           D
Sbjct: 337 D 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 40/302 (13%), Positives = 83/302 (27%), Gaps = 54/302 (17%)

Query: 31  TLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLA 90
           +L ++         +  +        SG  D+TI ++D +T      +  H + SV  L 
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQ 62

Query: 91  FYTPQNLSVPRNLFSTS---------------------------------ADGFVSIFDA 117
           +     ++   +                                       D  ++++D 
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLI 177
                +T  +V       + V       +     D    V             G +  + 
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 178 KFDGSGEKFFMVTEEK-VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITA 236
                       + +  + +   E    L  L+G + ++     +N  + +G  D  I  
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 237 WDTNSGKVAYCIED--------AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICV 288
           WD  +                  HS RV  +             + + + S+S D  I +
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRL-----------QFDEFQIVSSSHDDTILI 291

Query: 289 WD 290
           WD
Sbjct: 292 WD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 24/218 (11%)

Query: 79  HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAV 138
               S  V  L +         + + S   D  + I+D +       +  H   V  L +
Sbjct: 11  RSETSKGVYCLQYD-------DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCL 61

Query: 139 HHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGI-- 196
            +  ++ +T   D  + + ++  G          EA L     +G       +  + +  
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 197 -HQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSAR 255
                D  L   L G +  +     ++  + +   DR+I  W+T++ +    +       
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 256 VKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM 293
                               LV S SSD  I +WD+  
Sbjct: 182 AC------------LQYRDRLVVSGSSDNTIRLWDIEC 207

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 1   MSLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGT 60
             +++G+Y+  I  + L  +    +   TL L  L     H   +  +        S   
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL---VEHSGRVFRLQFDEFQIVSSSH 285

Query: 61  DDTIHLYD 68
           DDTI ++D
Sbjct: 286 DDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 34/258 (13%), Positives = 74/258 (28%), Gaps = 17/258 (6%)

Query: 40  AHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSV 99
           AH + I +V+   +   S   D  + ++D     +        S  V     +    L  
Sbjct: 12  AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 100 -------PRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD 152
                     + +TS  G +  +          V   K  + D  +      AL  G  +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 153 CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKK 212
                + +   R     +     + KF    ++   +T       +     +   +   +
Sbjct: 132 -----DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-QGTVESPMTPSQ 185

Query: 213 RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAE 272
                   E G++ TG  + ++   + ++ +  Y  E  HS       + +       + 
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF----SP 241

Query: 273 NPYLVASASSDGVICVWD 290
              L+A A          
Sbjct: 242 QGSLLAIAHDSNSFGCIT 259

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 40/380 (10%), Positives = 101/380 (26%), Gaps = 74/380 (19%)

Query: 3   LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGG 59
            ++ S + ++  +  K  ++ +   K+ +     S   H+  +  +          A+  
Sbjct: 27  TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86

Query: 60  TDDTIHLYDLSTSSSLGAIHHHE---------SSSVTSLAFYTPQNLSVPRNLFSTSADG 110
               +  Y ++       +   +           S  +L +    +  +   L +T   G
Sbjct: 87  FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 146

Query: 111 FVSIFDADPF------------------VLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD 152
              I+   PF                    + S     +    + +   G +A   G ++
Sbjct: 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA--TGFNN 204

Query: 153 CLAMVNLVRGRRSFYHKIGKEASLIKFDG----------------------------SGE 184
               ++ +   R  Y+   + + +   +                               E
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 185 KFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKV 244
               +    V  H ++ +            L        +    G D  +  WD  + + 
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDGKLRFWDVKTKER 323

Query: 245 AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAE 304
              +   H   ++             A + +   S +  GV  V  ++   +        
Sbjct: 324 ITTLN-MHCDDIEIEED-------ILAVDEHG-DSLAEPGVFDVKFLKKGWRSGMG---- 370

Query: 305 AKTNSRLTCLAGSSTKSFKR 324
           A  N  L C+    +  + R
Sbjct: 371 ADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 214 ILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE---DAHSARVKGIVVLTKNDGGST 270
           I   +   N    +   D  +  WD          +        +     V         
Sbjct: 17  IFSVSA-CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 75

Query: 271 AENPYLVASASSDGVICVWDVR 292
           A    LVA+ S  G +  + + 
Sbjct: 76  AFELCLVATTSFSGDLLFYRIT 97

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 8e-08
 Identities = 36/293 (12%), Positives = 79/293 (26%), Gaps = 34/293 (11%)

Query: 23  YSSDQKTLTLTQLFSYPAHLS-PITTVAVS----GTAAASGGTDDTIHLYDLSTSSSLGA 77
              D     +  +  +  H S  +TTV  S         SG     + ++  +      +
Sbjct: 43  RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102

Query: 78  IHHHE-------SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK 130
           +  +        +  ++ +++                 D F      D    L  V  H 
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR---DNFGVFISWDSGNSLGEVSGHS 159

Query: 131 KGVNDLAVHHSGKLALTVGRDDCLAMVNLVR------------GRRSFYHKIGKEASLIK 178
           + +N   +  S  +      DD   +                  + SF   +       +
Sbjct: 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE 219

Query: 179 FDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWD 238
           F  +      ++       +        +   +  I   +  ++    T G D +I  WD
Sbjct: 220 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 279

Query: 239 TNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV 291
             + K           ++    V     G         + S S DG +  +++
Sbjct: 280 VTTSKCVQKWT-LDKQQLGNQQVGVVATGNG------RIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 37/311 (11%), Positives = 84/311 (27%), Gaps = 22/311 (7%)

Query: 29  TLTLTQLF-SYPAHL-SPITTVAVS--GTAAASGGTDDT-IHLYDLSTSS--SLGAIHHH 81
           +++L ++    P+   +  T ++      A A        +   D   S    +     H
Sbjct: 2   SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61

Query: 82  ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--------PFVLLTSVKVHKKGV 133
            SS VT++ F   +       L S    G V ++              + +  +V    +
Sbjct: 62  GSSVVTTVKFSPIKGSQY---LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 118

Query: 134 NDLAVHHSGKLAL--TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTE 191
           +D++    G+       GRD+    ++   G          +               +T 
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178

Query: 192 EKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDA 251
              G                +           V F+      +    ++     +  +  
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238

Query: 252 HSARVKGIVVLTKNDGGSTAENPY--LVASASSDGVICVWDVRMAIKEKPLPLAEAKTNS 309
              +           G            A+  +D  I VWDV  +   +   L + +  +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

Query: 310 RLTCLAGSSTK 320
           +   +  +   
Sbjct: 299 QQVGVVATGNG 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 29/250 (11%), Positives = 64/250 (25%), Gaps = 25/250 (10%)

Query: 56  ASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-------- 107
            +G  D+T+H++ L   SS+          +                    S        
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171

Query: 108 -------ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV 160
                   D  + ++D      L  +  H   +      H  K  ++   D  + + +L 
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 231

Query: 161 RGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPG 220
            G   +  +       +             +  +    A D                   
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 291

Query: 221 ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA 280
            +  +   G +     ++  SGK+ +      + ++  +    K           LVA+ 
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT----------LVAAV 341

Query: 281 SSDGVICVWD 290
             DG   +  
Sbjct: 342 EKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 81  HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH 140
           H +S +T L F           + + + D  + ++D+     L  +  H  GV  L   H
Sbjct: 11  HMTSVITCLQFE-------DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 141 SGKLA 145
            G L 
Sbjct: 64  GGILV 68

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 38  YPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNL 97
           +  +LS ITT  VS     SG  ++  ++Y+L +   + A    ++  + S+ F   + L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF-KGKTL 337

Query: 98  SVPRNLFSTSADGFVSIFDAD 118
                + +   DG   +   D
Sbjct: 338 -----VAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 34 QLFSYPAHLSPITT-VAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAF 91
          Q  +   H++ + T +        +G  D  I +YD      L  +  H    V +L +
Sbjct: 4  QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKY 61

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 6e-07
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNL 97
          H   IT ++ S  G    S   +  I+ +D+ST  S        ++ +T +   +  +L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 226 FTGGEDRSITAWDTNSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG 284
            TG  D S+  W+ N        I+ AH+     +  +   +          + SA  D 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS--VNSVIWLNET-------TIVSAGQDS 290

Query: 285 VICVWDV 291
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 211 KKRILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGI 259
            K I   +   +G  LF+   +  I +WD ++G       D H+  + GI
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 51  SGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG 110
            GT  AS   D TI +++++T      I          L       +   + L S SA+G
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI-----IWTKQALVSISANG 303

Query: 111 FVSIFDAD 118
           F++  + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 9e-07
 Identities = 32/272 (11%), Positives = 67/272 (24%), Gaps = 21/272 (7%)

Query: 31  TLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTS 88
           +LT    Y  H    T    S  G   ASG     + ++D + ++ +        S    
Sbjct: 47  SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106

Query: 89  LAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV 148
              +  ++  +          G V +FD        + +       D       ++    
Sbjct: 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166

Query: 149 GRDDCLAMVNLVRGRR----------SFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQ 198
             +            +                   +      G G        +      
Sbjct: 167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226

Query: 199 AEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG 258
            ED  L                +   + +   D++I  W+  + KV   I        + 
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 286

Query: 259 IVVLTKNDGGSTAENPYLVASASSDGVICVWD 290
           + +               + S S++G I   +
Sbjct: 287 LGI---------IWTKQALVSISANGFINFVN 309

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 215 LCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP 274
                 E  ++ TG  D +I  +            +AH   V  ++  T +         
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--------- 270

Query: 275 YLVASASSDGVICVWDV 291
             + S+ +D  I  W+V
Sbjct: 271 -TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 8e-06
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 51  SGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG 110
                A+G  D  I +Y +     +    +     V +L +        P  L S+ AD 
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW------ETPSTLVSSGADA 279

Query: 111 FVSIFD 116
            +  ++
Sbjct: 280 CIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 105 STSADGFVSIFD-ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV 160
           + S D  + I+    P  ++ ++  HK GVN+L       L  + G D C+   N+V
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNVV 287

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 77  AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD--PFVLLTSVKVHKKGVN 134
           A H      ++  A+           +     +  V I++     +V +  +K H   V 
Sbjct: 1   AYHSFLVEPISCHAW-NKDR----TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT 55

Query: 135 DLAVHHSGKLALTVGRD 151
            +         +T G D
Sbjct: 56  GVDWAPDSNRIVTCGTD 72

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 6e-06
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 41  HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS--LGAIHHHESSSVTSLAFYTPQN 96
            + PI+  A +   T  A    +  +H+Y+ S +    +  +  H +  VT + +    N
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSN 64

Query: 97  LSVPRNLFSTSADGFVSIFD 116
                 + +   D    ++ 
Sbjct: 65  R-----IVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 39/330 (11%), Positives = 78/330 (23%), Gaps = 68/330 (20%)

Query: 26  DQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES 83
           ++      Q+     H   +T V  +       + GTD   +++ L   +    +     
Sbjct: 35  EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94

Query: 84  SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK 143
           +       + P          S          + D +V     K  +  V  L  H +  
Sbjct: 95  NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154

Query: 144 LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAK 203
           L      D    + +                S + F     +         G+  + +  
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214

Query: 204 LLCELDGKKRI---------------------LCAAPGENGVLFTGGEDRSIT--AWDTN 240
            +  +     +                     L         L   G D       +D+ 
Sbjct: 215 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274

Query: 241 SGKVAY--------------------------------------CIEDAHSARVKGIVVL 262
           +GK+++                                       ++  H   V  I VL
Sbjct: 275 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 334

Query: 263 TKNDGGSTAENPYLVASASSDGVICVWDVR 292
           +               +   DG + +WDVR
Sbjct: 335 SGGKA-----KCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 214 ILCAAPGENG-VLFTGGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKNDGGSTA 271
           I C A  ++   +     +  +  ++ +  K     E   H+ +V G+     ++     
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN----- 64

Query: 272 ENPYLVASASSDGVICVWDVRM 293
                + +  +D    VW ++ 
Sbjct: 65  ----RIVTCGTDRNAYVWTLKG 82

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG 284
             + G+D  + AW T  G   +  +   S+ V    +         + +   + + S D 
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDI---------SVDDKYIVTGSGDK 328

Query: 285 VICVWDV 291
              V++V
Sbjct: 329 KATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 38  YPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQ 95
              H S + ++  +  G    S G D+ ++ +     +S+        SSV S    +  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDI-SVD 317

Query: 96  NLSVPRNLFSTSADGFVSIFD 116
           +    + + + S D   ++++
Sbjct: 318 D----KYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLV 160
           +   ST  D  ++ +       +   K     V    +    K  +T   D    +  ++
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/112 (10%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 129 HKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM 188
               +  L    +G+          + ++++ +  +   H        +KF   G+ F  
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS 282

Query: 189 VTEEK-VGIHQAEDAKLLCELDGKKRILCAAPGENG-VLFTGGEDRSITAWD 238
             ++  +   +      + +      +L      +   + TG  D+  T ++
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 34  QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE----SSSVT 87
           +  +   H   +  V +S       +GG    + ++D+S   +   +   +     + + 
Sbjct: 43  RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 88  SLAF 91
           S   
Sbjct: 102 SCKL 105

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 33/305 (10%), Positives = 75/305 (24%), Gaps = 50/305 (16%)

Query: 26  DQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE 82
           D + + + ++ +            V+     A A+    +++   DL T  +LG I    
Sbjct: 17  DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76

Query: 83  ----SSSVTSLAF-------YTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKK 131
                 S+   A           ++               V+++DA+      + +   +
Sbjct: 77  PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APR 135

Query: 132 GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDG-----SGEKF 186
            +  LA    G     +GRD  +              +  +  +  + D        E  
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195

Query: 187 FMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGG----------------- 229
            ++        +  D             +    GE  +                      
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 230 --EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC 287
                 + ++D         +          + V    DG         V    + G + 
Sbjct: 256 FGAYNVLESFDLEKNASIKRVP--LPHSYYSVNV--STDGS-------TVWLGGALGDLA 304

Query: 288 VWDVR 292
            +D  
Sbjct: 305 AYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 19  PSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAI 78
            +   + D +T  +              + AV+     + G  + +  +DL  ++S+  +
Sbjct: 218 RTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV 276

Query: 79  HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLA 137
                 S  S+   +         ++   A G ++ +DA+       V +       LA
Sbjct: 277 PL--PHSYYSVNV-STDG----STVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 29/282 (10%), Positives = 59/282 (20%), Gaps = 44/282 (15%)

Query: 46  TTVAVSGTA---AASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRN 102
           + +A + T     A G   D + ++D  T      I   ++       +    +L+    
Sbjct: 59  SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 118

Query: 103 LFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL--- 159
                                   ++            +        RD  LA V     
Sbjct: 119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE 178

Query: 160 ----VRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEK---------------------- 193
               +     F+ +     +   +     +    T                         
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238

Query: 194 ---VGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIED 250
                                   +     +          R +   D  +G+     E 
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE- 297

Query: 251 AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR 292
                +  I V       S  E P L A ++ D  + + D  
Sbjct: 298 -MGHEIDSINV-------SQDEKPLLYALSTGDKTLYIHDAE 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 26/254 (10%), Positives = 59/254 (23%), Gaps = 24/254 (9%)

Query: 48  VAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFS 105
            A+             + +H+ D+++ +   +    +     +     P N +       
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDNRTA---YVL 57

Query: 106 TSADGFVSIFDADP------FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL 159
            +  G +   D D         L +      + +   A+   GK              + 
Sbjct: 58  NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117

Query: 160 VRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAP 219
           V            +    K   +      V      +  A+D  L        ++     
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVY----LMRAADDGSLYVAGPDIYKMDVKTG 173

Query: 220 GENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS 279
                L     +R       +           H   +   +   K+D           A+
Sbjct: 174 KYTVALPLRNWNRKG-YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD-------PAT 225

Query: 280 ASSDGVICVWDVRM 293
           A         D++ 
Sbjct: 226 ADLLYGYLSVDLKT 239

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 35/310 (11%), Positives = 67/310 (21%), Gaps = 55/310 (17%)

Query: 26  DQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE 82
           D  + T+ +    P    P  T  ++    TA         I+  DL T  +    +   
Sbjct: 24  DVASDTVYKSCVMPDKFGP-GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82

Query: 83  -----SSSVTSLAF-------YTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHK 130
                  S+ S A        Y   N +   N         + +F     +    V+   
Sbjct: 83  VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 142

Query: 131 --KGVNDLAVHHSGKLALTVGRDD--------CLAMVNLVRGRRSFYHKIGKEASLIKFD 180
             + V  +     G L +                  + L    R  Y             
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 181 GSGEKFFMVTEEKVG-----IHQAEDAKLLCELDGK-------------KRILCAAPGEN 222
              E   + T  +          A+       +D K             +          
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 223 GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS 282
                 G    +  +D    K+              +       G         +    +
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAF--DKKGD-------KLYLGGT 311

Query: 283 DGVICVWDVR 292
              + V++  
Sbjct: 312 FNDLAVFNPD 321

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 36/231 (15%), Positives = 63/231 (27%), Gaps = 36/231 (15%)

Query: 94  PQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD 151
             N     NLFS +    G +++ D   + + T +      V+   +  SG+    +GRD
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRD 82

Query: 152 DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDGK 211
             + M++L     +   +I                      K+G           E    
Sbjct: 83  GKVNMIDLWMKEPTTVAEI----------------------KIGSEARSIETSKMEGWED 120

Query: 212 KRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTA 271
           K  +  A      +   GE        +  G      E     RV  I+         + 
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--------SH 172

Query: 272 ENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSF 322
             P  + +    G I + D         L   E      L       +  +
Sbjct: 173 YRPEFIVNVKETGKILLVDYT---DLNNLKTTEISAERFLHDGGLDGSHRY 220

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 40 AHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE--SSSVTSLAFYTPQ 95
          A    I+ + +    +       D ++ +Y     +    +         +    F    
Sbjct: 9  APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 96 NLSV 99
          +L +
Sbjct: 69 DLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 83  SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD---PFVLLTSVKVHKKGVNDLAVH 139
              ++ +    P        L  TS DG ++++  D     V L     +K  +      
Sbjct: 11  KDYISDIKI-IPSK----SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 140 HSGKLALTVGRDDCLAMVNLVRGRRSFYH 168
            +  L + VG      +   + G  SF  
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQA 94

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 225 LFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDG 284
           L+T G D  I+ W+  + K        +   V  I           A +  ++  A+SD 
Sbjct: 266 LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI-----------ACSDNILCLATSDD 314

Query: 285 VICVWDV 291
                  
Sbjct: 315 TFKTNAA 321

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 227 TGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI 286
              E  +I+  D  S KV   I     +   G V+        + +   +  + +    +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIP--VGSNPMGAVI--------SPDGTKVYVANAHSNDV 56

Query: 287 CVWDV 291
            + D 
Sbjct: 57  SIIDT 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	343
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.3
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.16
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.94
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.82
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.8
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.79
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.58
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.57
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.46
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.32
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.02
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.0
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.66
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.63
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.34
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.18
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.78
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.67
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.14
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.59
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.17
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.85
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.14
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.94
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.02
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.27
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.13
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.99

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-43  Score=293.17  Aligned_cols=266  Identities=16%  Similarity=0.233  Sum_probs=238.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC--eeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS--SSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~~~~   77 (343)
                      .|++|+ ||.|+|||+...       ............+|.++|++++|+  +++|++|+.||.|++||+...  +....
T Consensus        65 ~latg~-dg~V~iWd~~~~-------~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  136 (337)
T d1gxra_          65 HVYTGG-KGCVKVWDISHP-------GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE  136 (337)
T ss_dssp             EEEEEC-BSEEEEEETTST-------TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred             EEEEEE-CCEEEEEEccCC-------cccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccc
Confidence            367776 899999999762       222233344556899999999998  889999999999999998754  55667


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEE
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMV  157 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~w  157 (343)
                      +..| ...+.+++|+|++     .++++++.|+.|++|++.++++......|...|.+++|++++..+++++.|+.+++|
T Consensus       137 ~~~~-~~~v~~~~~~~~~-----~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~  210 (337)
T d1gxra_         137 LTSS-APACYALAISPDS-----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             EECS-SSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccc-ccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7788 8899999999998     799999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEE
Q 019326          158 NLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSIT  235 (343)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~  235 (343)
                      |+++++.+....+...+.+++|+|+++.++++ .++.+++||+++++......|...|.+++|+ ++++|++|+.||.|+
T Consensus       211 d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEE
Confidence            99999998888899999999999999999998 8999999999999988888899999999998 467999999999999


Q ss_pred             EEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          236 AWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       236 i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +||+.+++.+..+.  |...|.+++|+|++.         +|++|+.||+|+|||+-
T Consensus       291 iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~---------~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         291 AWRTPYGASIFQSK--ESSSVLSCDISVDDK---------YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEETTTCCEEEEEE--CSSCEEEEEECTTSC---------EEEEEETTSCEEEEEEE
T ss_pred             EEECCCCCEEEEcc--CCCCEEEEEEeCCCC---------EEEEEeCCCeEEEEEEE
Confidence            99999999998876  889999999999887         99999999999999973

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-42  Score=286.09  Aligned_cols=284  Identities=15%  Similarity=0.164  Sum_probs=245.2

Q ss_pred             eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee---e--EeccCCCCCeEEEEEeCCCCCCCCce
Q 019326           30 LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL---G--AIHHHESSSVTSLAFYTPQNLSVPRN  102 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~---~--~~~~~~~~~v~~l~~~~~~~~~~~~~  102 (343)
                      ...+.++.+ .|..+|++++|+  +.+|++|+ ||.|+|||+.++...   .  ....| ...|.+++|+|++     ++
T Consensus        40 ~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h-~~~I~~v~~s~dg-----~~  111 (337)
T d1gxra_          40 RHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR-DNYIRSCKLLPDG-----CT  111 (337)
T ss_dssp             SEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT-TSBEEEEEECTTS-----SE
T ss_pred             CCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCC-CCcEEEEEEcCCC-----CE
Confidence            345666666 699999999999  88999987 899999999865332   2  23456 8899999999999     89


Q ss_pred             EEEeeCCCeEEEEECCC--cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEE
Q 019326          103 LFSTSADGFVSIFDADP--FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKF  179 (343)
Q Consensus       103 l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~  179 (343)
                      |++|+.||.|++||+..  .+....+..|...+..++|+|++.++++++.|+.|++|++++++...... +...+.+++|
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999864  45567778899999999999999999999999999999999988665544 4577999999


Q ss_pred             eCCCCEEEEE-eCCcEEEEEcccceeEEEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEE
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVK  257 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~  257 (343)
                      ++++..++++ .++.+++||+++++.+..+.+...|.++++++ ++++++|+.|+.|++||+++++.....  .|...|+
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~  269 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVL  269 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEE
T ss_pred             cccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccccc--ccccccc
Confidence            9999999999 89999999999999999999999999999984 679999999999999999988876543  6999999


Q ss_pred             EEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          258 GIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      +++|+|++.         +|++++.||.|++||+.++.     .+....+...|.+++|+|++++++.+..|+.++.++.
T Consensus       270 ~v~~s~~g~---------~l~s~s~Dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         270 SLKFAYCGK---------WFVSTGKDNLLNAWRTPYGA-----SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSS---------EEEEEETTSEEEEEETTTCC-----EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEECCCCC---------EEEEEeCCCeEEEEECCCCC-----EEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999887         99999999999999999874     3344556778999999999999999999998876653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-41  Score=278.10  Aligned_cols=258  Identities=14%  Similarity=0.191  Sum_probs=219.1

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee--eEeccCC
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL--GAIHHHE   82 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~   82 (343)
                      +.++.|.+|++..            ......+.+|.+.|++++|+  +++|++|+.||+|++||+.+++..  ..+..| 
T Consensus        35 ~~~~~v~i~~~~~------------~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~-  101 (311)
T d1nr0a1          35 CNGTSVYTVPVGS------------LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF-  101 (311)
T ss_dssp             EETTEEEEEETTC------------SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS-
T ss_pred             EeCCEEEEEECCC------------CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccc-
Confidence            3567899999976            34445567999999999998  899999999999999999987644  457778 


Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeC--CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCE-EEEEeCCCeEEEEEc
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL-ALTVGRDDCLAMVNL  159 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~i~~wd~  159 (343)
                      ..+|.+++|+|++     ++|++++.  +..+++|++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+
T Consensus       102 ~~~v~~v~~s~d~-----~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1         102 SGPVKDISWDSES-----KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             SSCEEEEEECTTS-----CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             cCccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            8999999999998     78888875  456999999999999999999999999999999874 888999999999999


Q ss_pred             cCCceeEEEEc-CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec--------CCcceEEeeec-CCCeEEEE
Q 019326          160 VRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD--------GKKRILCAAPG-ENGVLFTG  228 (343)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--------~~~~i~~~~~~-~~~~l~~~  228 (343)
                      ++++....... ...+.++.++|++++++++ .|+.+++||..++.....+.        |...|.+++|+ ++++|++|
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence            99887666544 5789999999999999999 89999999999988777664        56789999998 46899999


Q ss_pred             eCCCcEEEEECCCCceeEEeccccc-ccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          229 GEDRSITAWDTNSGKVAYCIEDAHS-ARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +.||.|++||+++++++.++. .|. .....+.+.+.++         .|++++.||.|++||++
T Consensus       257 s~Dg~v~iwd~~t~~~~~~l~-~~~~~~~~~~~~~~~~~---------~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         257 SADKTIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQ---------ALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE-CCSSGGGCEEEEEECSS---------CEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEE-CCCCccceEEEEEecCC---------EEEEEECCCEEEEEeCC
Confidence            999999999999999999987 443 2333334444444         79999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-41  Score=276.08  Aligned_cols=280  Identities=19%  Similarity=0.300  Sum_probs=250.0

Q ss_pred             eEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           35 LFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        35 ~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      .+.++||.++|++|+|+  +++|+||+.||+|++||+.+++.+..+..| ...|.+++|+|++     .+++++..++.+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~~~V~~~~~~~~~-----~~~~~~~~~~~~   83 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSG-----KLLASCSADMTI   83 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTS-----SEEEEEETTSCC
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-CCcEEEEeeeccc-----cccccccccccc
Confidence            35678999999999998  889999999999999999999999999999 9999999999998     899999999999


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-e
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~  190 (343)
                      .+|+....+....+..|...+.++.|+|+++.+++++.|+.+++||+++++...... +...+.+++++|++.+++++ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence            999999988888889999999999999999999999999999999999998776655 45678899999999999999 8


Q ss_pred             CCcEEEEEcccceeEEEec-CCcceEEeeec---------------------CCCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          191 EEKVGIHQAEDAKLLCELD-GKKRILCAAPG---------------------ENGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~---------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      ++.+++|+..+++....+. +...+.++.++                     ++.++++++.|+.|++||.++++++.++
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            9999999999999888876 66677777664                     2346899999999999999999999999


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccc-ccccceeEEEcCCCCceecccc
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEA-KTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      . +|...|.+++++|++.         +|++++.||.|++||+++++.     +..+ .+...|++++|++++.+++.+.
T Consensus       244 ~-~~~~~v~~~~~~~~~~---------~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         244 V-GHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDYKNKRC-----MKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             E-CCSSCEEEEEECSSSS---------CEEEEETTTEEEEECCTTSCC-----CEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             e-CCCCCEEEEEECCCCC---------EEEEEECCCeEEEEECCCCcE-----EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            9 9999999999999887         999999999999999998642     2222 2456799999999999999999


Q ss_pred             CCCCCCCc
Q 019326          328 GDSAPKGE  335 (343)
Q Consensus       328 ~~~~~~~~  335 (343)
                      .|+.++.+
T Consensus       309 ~Dg~i~iW  316 (317)
T d1vyhc1         309 VDQTVKVW  316 (317)
T ss_dssp             TTSEEEEE
T ss_pred             CCCeEEEe
Confidence            99876654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-40  Score=279.76  Aligned_cols=307  Identities=17%  Similarity=0.229  Sum_probs=250.5

Q ss_pred             EEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEecc-
Q 019326            4 IAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHH-   80 (343)
Q Consensus         4 ~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-   80 (343)
                      +.+..++.+.+|+...       .+.........+ +|.+.|+||+|+  |++|++|+ |+.|++||+.+++.+..+.. 
T Consensus        32 ~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~-~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~  102 (388)
T d1erja_          32 LKKQTNDYYILYNPAL-------PREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD  102 (388)
T ss_dssp             SEEECSSCEEEECTTS-------CCCEEEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-
T ss_pred             cccCCCCcEEEeCCCC-------CcceeeeeEeeC-CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccc
Confidence            4567788888998654       233333333333 699999999999  78999986 89999999999887766642 


Q ss_pred             -----------------CCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCC
Q 019326           81 -----------------HESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK  143 (343)
Q Consensus        81 -----------------~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  143 (343)
                                       | ...|++++|+|++     ++|++|+.||.|++||...++.+..+.+|...|.++++++++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~-~~~V~~l~~s~~~-----~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (388)
T d1erja_         103 SAANKDPENLNTSSSPSS-DLYIRSVCFSPDG-----KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD  176 (388)
T ss_dssp             ----------------CC-CCBEEEEEECTTS-----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccCC-CCCEEEEEECCCC-----Ccceecccccccccccccccccccccccccccccccccccccc
Confidence                             3 5679999999998     8999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeC-CCCEEEEE-eCCcEEEEEcccceeEEEec--------CCcc
Q 019326          144 LALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDG-SGEKFFMV-TEEKVGIHQAEDAKLLCELD--------GKKR  213 (343)
Q Consensus       144 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~d~~~~~~~~~~~--------~~~~  213 (343)
                      .+++++.++.+++||.++...............+.+.+ ++.+++++ .++.+++|+.+++.....+.        |...
T Consensus       177 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  256 (388)
T d1erja_         177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS  256 (388)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             cccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC
Confidence            99999999999999999988877777776666666665 67888888 89999999999988777664        5678


Q ss_pred             eEEeeec-CCCeEEEEeCCCcEEEEECCCCce------------eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEE
Q 019326          214 ILCAAPG-ENGVLFTGGEDRSITAWDTNSGKV------------AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASA  280 (343)
Q Consensus       214 i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  280 (343)
                      |.++.|+ ++.+|++|+.||.|++||++++..            ..... .|...|.+++|++++.         +|++|
T Consensus       257 v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------~l~sg  326 (388)
T d1erja_         257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDE---------YILSG  326 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGC---------EEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecc-cccceEEEEEECCCCC---------EEEEE
Confidence            9999998 467999999999999999976542            23334 6889999999999987         99999


Q ss_pred             cCCCcEEEEeccCccccCCCcccccccccceeEEE------cCCCCceeccccCCCCCCCccccC
Q 019326          281 SSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLA------GSSTKSFKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       281 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~------~s~~~~~~~~~~~~~~~~~~~~~~  339 (343)
                      +.||.|++||+++++.....   . .+...|.+++      ++|++.+++.+..|+.++.++.++
T Consensus       327 ~~dg~i~vwd~~~~~~~~~l---~-~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         327 SKDRGVLFWDKKSGNPLLML---Q-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             ETTSEEEEEETTTCCEEEEE---E-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCEEEEEECCCCcEEEEE---e-CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            99999999999987532211   1 2355688876      577999999999999888777644

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-39  Score=266.48  Aligned_cols=261  Identities=15%  Similarity=0.229  Sum_probs=235.9

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEec
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|++|+.||.|+|||+.+            .+.+..+.+|..+|.+++|+  +.+++++..++.+.+|+....+....+.
T Consensus        31 ~l~s~s~Dg~i~iWd~~~------------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          31 VMVSASEDATIKVWDYET------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             EEEEEESSSCEEEEETTT------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred             EEEEEeCCCeEEEEECCC------------CCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence            489999999999999987            34566788999999999999  8899999999999999999998888888


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNL  159 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~  159 (343)
                      .| ...+.++.|++++     +.+++++.|+.+++||+++++.+..+..|...+.+++|+|++.+|++++.|+.|++|++
T Consensus        99 ~~-~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          99 GH-DHNVSSVSIMPNG-----DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             CC-SSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cc-cccceeeeccCCC-----ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence            88 8999999999998     79999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEE-cCCcceEEEEeCC--------------------CCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEE
Q 019326          160 VRGRRSFYHK-IGKEASLIKFDGS--------------------GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILC  216 (343)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~  216 (343)
                      .+++...... ....+..+.++|+                    +..++++ .|+.+++|+.++++.+..+. |...|.+
T Consensus       173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  252 (317)
T d1vyhc1         173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  252 (317)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence            9988766544 3456677777654                    3467777 89999999999999998887 7889999


Q ss_pred             eeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          217 AAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       217 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +++++ +++|++|+.||.|++||+++++++..+. +|..+|++++|++++.         +|++|+.||+|+|||
T Consensus       253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~---------~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAP---------YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSS---------CEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCC---------EEEEEeCCCeEEEeC
Confidence            99984 6799999999999999999999999999 9999999999999887         999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-39  Score=266.23  Aligned_cols=245  Identities=18%  Similarity=0.208  Sum_probs=215.0

Q ss_pred             eeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           30 LTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        30 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      ...+..++++||.++|++|+|+  +++|+||+.||.|++||+.+++.+..+..| ...|.+++|+|++     .++++|+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v~~~~~~-----~~l~~~~  116 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSG-----NYVACGG  116 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEEEECTTS-----SEEEEEE
T ss_pred             cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecc-cccEEeeEeeccc-----eeeeeec
Confidence            3456678899999999999998  889999999999999999999999999999 8999999999999     8999999


Q ss_pred             CCCeEEEEECCCcc----eeee-----------------------------------------eeeccccEEEEEEecCC
Q 019326          108 ADGFVSIFDADPFV----LLTS-----------------------------------------VKVHKKGVNDLAVHHSG  142 (343)
Q Consensus       108 ~dg~i~iwd~~~~~----~~~~-----------------------------------------~~~~~~~v~~i~~~~~~  142 (343)
                      .|+.+.+|+.....    ....                                         ...+...+....+.+.+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence            99999999964321    1111                                         11233467778888888


Q ss_pred             CEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec---CCcceEEe
Q 019326          143 KLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD---GKKRILCA  217 (343)
Q Consensus       143 ~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~---~~~~i~~~  217 (343)
                      .++++++.|+.|++||+++++...... +...+.+++|+|++++++++ .|+.+++|+++.......+.   +...+.++
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence            999999999999999999998776654 45789999999999999999 89999999999998887765   56779999


Q ss_pred             eecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          218 APGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       218 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +|++ +++|++|+.||.|++||+.+++.+..+. +|..+|++++|+|++.         +|+||+.||.|+|||
T Consensus       277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~---------~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM---------AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSS---------CEEEEETTSCEEEEC
T ss_pred             EECCCCCEEEEEECCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCC---------EEEEEccCCEEEEeC
Confidence            9984 6799999999999999999999999999 9999999999999887         999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-38  Score=270.55  Aligned_cols=280  Identities=19%  Similarity=0.241  Sum_probs=222.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCC------CCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYS------SDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS   74 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~   74 (343)
                      |++|+ |+.|++||+.+.....      ...............+|...|++++|+  +++|++|+.||.|++||..+++.
T Consensus        77 lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~  155 (388)
T d1erja_          77 LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI  155 (388)
T ss_dssp             EEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc
Confidence            66665 8999999987622100      000000111223345688899999998  88999999999999999999999


Q ss_pred             eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeE
Q 019326           75 LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCL  154 (343)
Q Consensus        75 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i  154 (343)
                      +..+.+| ...|.++.+++++     ..+++++.++.+++||..+.........+...+....+.+++++|++++.|+.|
T Consensus       156 ~~~~~~h-~~~v~~~~~~~~~-----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  229 (388)
T d1erja_         156 VMILQGH-EQDIYSLDYFPSG-----DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV  229 (388)
T ss_dssp             EEEECCC-SSCEEEEEECTTS-----SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             ccccccc-ccccccccccccc-----ccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeE
Confidence            9999999 9999999999998     799999999999999999988777777555555444445578999999999999


Q ss_pred             EEEEccCCceeEEEE--------cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEE-------------EecCCc
Q 019326          155 AMVNLVRGRRSFYHK--------IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLC-------------ELDGKK  212 (343)
Q Consensus       155 ~~wd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~-------------~~~~~~  212 (343)
                      ++||.+++.......        +...+.+++|+|++++++++ .|+.+++||++++....             ...|..
T Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (388)
T d1erja_         230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD  309 (388)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred             EEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc
Confidence            999999888665443        24578999999999999999 89999999998654322             223678


Q ss_pred             ceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          213 RILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      .|.+++++ ++++|++|+.||.|++||+++++++.++. +|...|.++++.+..   .+++++.+|+||+.||+|+||++
T Consensus       310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~---~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGS---SLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSC---TTCTTCEEEEEEETTSEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEEecCc---ccCCCCCEEEEEeCCCEEEEEee
Confidence            89999998 46799999999999999999999999999 999999999987654   35678889999999999999998


Q ss_pred             cC
Q 019326          292 RM  293 (343)
Q Consensus       292 ~~  293 (343)
                      +.
T Consensus       386 ~k  387 (388)
T d1erja_         386 KK  387 (388)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6e-38  Score=264.97  Aligned_cols=273  Identities=15%  Similarity=0.132  Sum_probs=217.0

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeee--eE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSL--GA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~   77 (343)
                      .||+|+.||.|++||....          +...+..+++|.++|++|+|+  +++|++|+.|+.|++||+.++...  ..
T Consensus        21 ~la~~~~~~~i~iw~~~~~----------~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          21 QIAICPNNHEVHIYEKSGN----------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             EEEEECSSSEEEEEEEETT----------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCC----------CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence            4789999999999999761          245677788999999999998  899999999999999999887644  34


Q ss_pred             eccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee----eeeeeccccEEEEEEecCCCEEEEEeCCCe
Q 019326           78 IHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL----TSVKVHKKGVNDLAVHHSGKLALTVGRDDC  153 (343)
Q Consensus        78 ~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~  153 (343)
                      +..| ...|.+++|+|++     +.|++++.|++|++|+++.....    .....|...|.+++|+|++++|++++.|++
T Consensus        91 ~~~~-~~~v~~i~~~p~~-----~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          91 ILRI-NRAARCVRWAPNE-----KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             CCCC-SSCEEEEEECTTS-----SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccc-ccccccccccccc-----ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            4566 7899999999998     89999999999999998654432    333467889999999999999999999999


Q ss_pred             EEEEEccCCce------------------eEE-EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCc
Q 019326          154 LAMVNLVRGRR------------------SFY-HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKK  212 (343)
Q Consensus       154 i~~wd~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~  212 (343)
                      +++||......                  ... ..+...+.+++|+|++++++++ .|+.|++||+.+++.+..+. |..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            99999865421                  111 1234568899999999999998 89999999999999988887 677


Q ss_pred             ceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEE----------------------------------------ecccc
Q 019326          213 RILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYC----------------------------------------IEDAH  252 (343)
Q Consensus       213 ~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------------------------~~~~h  252 (343)
                      +|.+++|++++.+++++.|+.+++|..........                                        +...|
T Consensus       245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H  324 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH  324 (371)
T ss_dssp             CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred             cceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence            89999999665555666688777765433211100                                        01248


Q ss_pred             cccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          253 SARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       253 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ...|+++++.+....     ....|+|+|.||.|+|||+++.+
T Consensus       325 ~~~I~~i~~~~~~~~-----~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         325 KNSVSQISVLSGGKA-----KCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             SSCEEEEEEEESTTT-----SCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cCCEEEEEEeCCCCc-----ceEEEEEEcCCCeEEEEeCCcCh
Confidence            889999999987642     12269999999999999998753

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-38  Score=262.05  Aligned_cols=278  Identities=17%  Similarity=0.163  Sum_probs=226.6

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECC
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDAD  118 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  118 (343)
                      +.+.+..++++  ++.|+.+. ++.|.+||+++++....+.+| ...|++++|+|++     ++|++|+.||+|++||+.
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H-~~~v~~~~~sp~g-----~~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEH-SHQTTVAKTSPSG-----YYCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCC-SSCEEEEEECTTS-----SEEEEEETTSEEEEEESS
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCC-CCCEEEEEEeCCC-----CeEeccccCceEeeeeee
Confidence            45566677887  78888875 667999999999999999999 9999999999999     899999999999999998


Q ss_pred             Cccee--eeeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCE-EEEE-eC
Q 019326          119 PFVLL--TSVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEK-FFMV-TE  191 (343)
Q Consensus       119 ~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~  191 (343)
                      +.+..  ..+..|...|.+++|+|++++|++++.  +..+++|++++++...... +...+.+++|+|++++ ++++ .|
T Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            76644  557889999999999999999999986  4569999999887665443 3467999999999886 5666 78


Q ss_pred             CcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec------ccccccEEEEEEEe
Q 019326          192 EKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE------DAHSARVKGIVVLT  263 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~h~~~v~~~~~~~  263 (343)
                      +.|++||+++++....+. |..+|.++.++ +++++++++.|+.|++||..+++....+.      .+|...|++++|+|
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            999999999999888887 78899999999 46799999999999999999998877764      25889999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCccc
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEK  337 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~  337 (343)
                      ++.         +|++|+.||.|+|||+++++.....+... .....+.++.+  ++.+++.+..++.++.++.
T Consensus       249 ~~~---------~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         249 DGT---------KIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIW--TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             TSS---------EEEEEETTSEEEEEETTTTEEEEEEECCS-SGGGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred             CCC---------EEEEEeCCCeEEEEECCCCcEEEEEECCC-CccceEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence            887         99999999999999999875433222111 11123444555  4556778888887776553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-37  Score=254.04  Aligned_cols=283  Identities=16%  Similarity=0.124  Sum_probs=226.5

Q ss_pred             EeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           34 QLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ..+.+.||.++|++|+|+  +++|++|+.||+|++||+++++.+..+...|...|++++|+|++      .+++++.|+.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g------~~~~~~~d~~   77 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG------DLFTVSWDDH   77 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS------CEEEEETTTE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc------eeecccceee
Confidence            456778999999999999  88999999999999999999998888854338999999999998      4677888999


Q ss_pred             EEEEECCCcc---eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          112 VSIFDADPFV---LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       112 i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      +++|+.....   .......+...+.+++|+|+++.+++++ ++.+.+|+..   ..........+.+++++|+++++++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT---EEEEEECSSCEEEEEECTTSCEEEE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccc-cccccccccc---ccccccccccccccccccccccccc
Confidence            9999986532   2233345777899999999998776655 5689999854   2344456677889999999999999


Q ss_pred             E-eCCcEEEEEcccceeE--EEecCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeE---EecccccccEEEEEE
Q 019326          189 V-TEEKVGIHQAEDAKLL--CELDGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAY---CIEDAHSARVKGIVV  261 (343)
Q Consensus       189 ~-~~~~i~~~d~~~~~~~--~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~h~~~v~~~~~  261 (343)
                      + .++.+.+||+++++..  ....|..+|.++++++ +.++++++.|+.|++||+.++..+.   .+. +|..+|++++|
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~  232 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSW  232 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            8 8999999999887654  3445889999999984 6799999999999999998876543   344 78999999999


Q ss_pred             EecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          262 LTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                      +|++.         +|++|+.||.|++||++++.... ......+....+.++.+ +++.+++.+..|+.++.++.+
T Consensus       233 s~~~~---------~l~sgs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         233 SPDNV---------RLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CTTSS---------EEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccc---------ceEEEcCCCEEEEEECCCCCcce-EEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99887         99999999999999998764222 12222334455777765 456678888899988877653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-36  Score=253.52  Aligned_cols=295  Identities=15%  Similarity=0.233  Sum_probs=229.3

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEecc
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHH   80 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~   80 (343)
                      .|++|+.||.|+|||+.+            .+.+.++.+|.++|++++|+ +++|++|+.|+.|++|+....+.......
T Consensus        25 ~l~tgs~Dg~i~vWd~~~------------~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~   92 (355)
T d1nexb2          25 YVITGADDKMIRVYDSIN------------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG   92 (355)
T ss_dssp             EEEEEETTTEEEEEETTT------------TEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEEeCCCeEEEEECCC------------CcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccc
Confidence            489999999999999987            46678889999999999999 88999999999999999999887776654


Q ss_pred             CC-CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeee-----------------------eeeccccEEEE
Q 019326           81 HE-SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTS-----------------------VKVHKKGVNDL  136 (343)
Q Consensus        81 ~~-~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~~~~~v~~i  136 (343)
                      .. ........+.+++     ..+++++.|+.|++||+.+......                       ...|...+.  
T Consensus        93 ~~~~~~~~~~~~~~~~-----~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--  165 (355)
T d1nexb2          93 HNSTVRCLDIVEYKNI-----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--  165 (355)
T ss_dssp             CSSCEEEEEEEEETTE-----EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--
T ss_pred             cccccccccccccccc-----ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--
Confidence            41 2334556677777     7899999999999999876543222                       112333333  


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcc
Q 019326          137 AVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKR  213 (343)
Q Consensus       137 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~  213 (343)
                      .+.+++++++++..|+.+++||+++++.+.... ....+..+.++|++..++++ .++.+++||.+++..+..+. |...
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            345567899999999999999999988766554 44678889999999999999 89999999999999998887 7888


Q ss_pred             eEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEE-ecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          214 ILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVL-TKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       214 i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      |.++.+ ++++|++|+.||.|++||++++.....   .|...+.++.+. +++.         ++++ +.||.|+|||++
T Consensus       246 v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~l~~-g~d~~i~vwd~~  311 (355)
T d1nexb2         246 VGLLRL-SDKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDN---------ILVS-GSENQFNIYNLR  311 (355)
T ss_dssp             CCEEEE-CSSEEEEECTTSEEEEEETTTCCEEEE---EECTTCCCCCEEEECSS---------EEEE-EETTEEEEEETT
T ss_pred             cccccc-ccceeeeeecccccccccccccceecc---cccCCceEEEEEcCCCC---------EEEE-EeCCEEEEEECC
Confidence            999999 467999999999999999998765443   455666666554 4443         5555 569999999999


Q ss_pred             CccccCCCcccccccccceeEEEcCCCCceeccccCCCCCC
Q 019326          293 MAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPK  333 (343)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~  333 (343)
                      +++....   ....+..+|.+++++++ .+++++..|+...
T Consensus       312 tg~~~~~---~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~  348 (355)
T d1nexb2         312 SGKLVHA---NILKDADQIWSVNFKGK-TLVAAVEKDGQSF  348 (355)
T ss_dssp             TCCBCCS---CTTTTCSEEEEEEEETT-EEEEEEESSSCEE
T ss_pred             CCCEEEE---EecCCCCCEEEEEEcCC-eEEEEEECCCcEE
Confidence            8754322   12345567999999987 4677777888654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-36  Score=256.53  Aligned_cols=236  Identities=11%  Similarity=0.112  Sum_probs=199.1

Q ss_pred             CCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCe--eeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEE
Q 019326           41 HLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSS--SLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFD  116 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd  116 (343)
                      +..||+|++|+  +++||+|+.||.|++||+.+++  .+..+.+| ..+|.+++|+|++     ++|++|+.|++|++||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~-----~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDS-----NRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTT-----TEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCC-----CEEEEEECCCeEEEEe
Confidence            45789999999  8899999999999999998775  56778889 9999999999998     8999999999999999


Q ss_pred             CCCcce--eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-----cCCcceEEEEeCCCCEEEEE
Q 019326          117 ADPFVL--LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-----IGKEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       117 ~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  189 (343)
                      +.++..  ...+..|...|.+++|+|+++.|++++.|+.+++|++..........     +...+.+++|+|++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            976553  44456788899999999999999999999999999998766433222     34678999999999999999


Q ss_pred             -eCCcEEEEEcccce------------------eEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          190 -TEEKVGIHQAEDAK------------------LLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       190 -~~~~i~~~d~~~~~------------------~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                       .|+.+++|+.....                  ...... |...+.+++|++ +++|++++.|+.|++||+.+++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence             89999999986432                  222222 677899999984 679999999999999999999999999


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccC
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRM  293 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  293 (343)
                      . .|..+|.+++|++++.         +|++ +.|+.+++|....
T Consensus       240 ~-~~~~~v~s~~fs~d~~---------~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         240 A-SETLPLLAVTFITESS---------LVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             E-CSSCCEEEEEEEETTE---------EEEE-ETTSSCEEEEEET
T ss_pred             e-cccccceeeeecCCCC---------EEEE-EcCCceEEEEeeC
Confidence            9 9999999999999885         6655 5578877776544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-36  Score=251.32  Aligned_cols=276  Identities=20%  Similarity=0.214  Sum_probs=215.3

Q ss_pred             eEEecCCCCCe-EEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEE
Q 019326           35 LFSYPAHLSPI-TTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVS  113 (343)
Q Consensus        35 ~~~~~~h~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~  113 (343)
                      ..+++||...| +|++|++++|+||+.||+|++||+.+++++..+.+| ...|++++|+|++      +|++|+.|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~l~~s~~~------~l~s~s~D~~i~   77 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG------ILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEEETTT------EEEEEETTCCEE
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECC-CCCEEEEEEcCCC------EEEEEecccccc
Confidence            45678998875 789999999999999999999999999999999999 9999999999865      899999999999


Q ss_pred             EEECCCcceeeeeeecc--ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc---------------------
Q 019326          114 IFDADPFVLLTSVKVHK--KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI---------------------  170 (343)
Q Consensus       114 iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---------------------  170 (343)
                      +|+....+.......+.  .......+.+++.++++++.|+.|++||+++.........                     
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            99998887766655433  3456667788999999999999999999987654322111                     


Q ss_pred             -CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          171 -GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       171 -~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                       ........+.++++.++.+ .++.+++||+++++.+.... +...+.++.++ .+.++++++.|+.|++||.+++..+.
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence             1122334566778888888 89999999999999888777 66778888887 46799999999999999999999999


Q ss_pred             EecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccc
Q 019326          247 CIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       247 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                      .+. +|...|.++++++.           +|++++.||.|++||+++...     ....+.........+++++.+++.+
T Consensus       238 ~~~-~h~~~v~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         238 TLQ-GHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             EEC-CCSSCCCEEEECSS-----------EEEEECTTSEEEEEETTTCCE-----EEEEECTTCCCCCEEEECSSEEEEE
T ss_pred             ccc-cccccccccccccc-----------eeeeeecccccccccccccce-----ecccccCCceEEEEEcCCCCEEEEE
Confidence            999 99999999988653           899999999999999987632     2222333322223445566655554


Q ss_pred             cCCCCCCCc
Q 019326          327 IGDSAPKGE  335 (343)
Q Consensus       327 ~~~~~~~~~  335 (343)
                      . |+.++.+
T Consensus       301 ~-d~~i~vw  308 (355)
T d1nexb2         301 S-ENQFNIY  308 (355)
T ss_dssp             E-TTEEEEE
T ss_pred             e-CCEEEEE
Confidence            3 4444433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=244.24  Aligned_cols=295  Identities=15%  Similarity=0.229  Sum_probs=238.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .||+|+.||.|+|||+.+            .+++.++.+|.++|.+++|++++|++|+.|+.+++|+............+
T Consensus        29 ~l~sgs~Dg~i~vWd~~~------------~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~   96 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVT------------GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH   96 (342)
T ss_dssp             EEEEEETTSCEEEEETTT------------CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEECCC------------CCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceeccccc
Confidence            589999999999999987            45677889999999999999999999999999999999988877777766


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVR  161 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~  161 (343)
                       ...+......+       ..+..+..|+.+.+|+..+++....+..+.....  ...+....+++++.|+.+++||.+.
T Consensus        97 -~~~~~~~~~~~-------~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          97 -TSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             -SSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             -ceeEeeeeccc-------ccccccccceeEEEeecccccceeeeecccccce--eeccccceeeeecCCCeEEEeeccc
Confidence             66676666554       3688899999999999999887777765544433  3445567899999999999999998


Q ss_pred             CceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEEC
Q 019326          162 GRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~  239 (343)
                      .+...... .+......+.+++.+++++ .|+.|++||++.++.+..+. |...+.++.+ ++++|++|+.||.|++||.
T Consensus       167 ~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         167 ETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             ceeeEEEc-CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec-CCCEEEEEcCCCEEEEEec
Confidence            87655443 3445566677788999998 89999999999999988887 6777888888 4579999999999999999


Q ss_pred             CCCceeEEecc--cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcc-cccccccceeEEEc
Q 019326          240 NSGKVAYCIED--AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPL-AEAKTNSRLTCLAG  316 (343)
Q Consensus       240 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~i~~~~~  316 (343)
                      ...+....+..  .|...+.++.+++  .         ++++|+.||.|++||+++++....... ....+...|+++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         245 KTGQCLQTLQGPNKHQSAVTCLQFNK--N---------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEEEECS--S---------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             ccccccccccccceeeeceeecccCC--C---------eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            99988877762  3556666666654  3         899999999999999998754332221 12234567999999


Q ss_pred             CCCCceeccccCCCC
Q 019326          317 SSTKSFKRPQIGDSA  331 (343)
Q Consensus       317 s~~~~~~~~~~~~~~  331 (343)
                      +|++.+++.+..++.
T Consensus       314 s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGT  328 (342)
T ss_dssp             CSSEEEEEEECSSSS
T ss_pred             CCCCCEEEEEeCCCC
Confidence            999999999998875

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-35  Score=242.42  Aligned_cols=244  Identities=18%  Similarity=0.262  Sum_probs=196.1

Q ss_pred             EEeEEecCCC-CCeEEEEec----CceEEEeeCCCeEEEEEcCCCeee--------eEeccCCCCCeEEEEEeCCCCCCC
Q 019326           33 TQLFSYPAHL-SPITTVAVS----GTAAASGGTDDTIHLYDLSTSSSL--------GAIHHHESSSVTSLAFYTPQNLSV   99 (343)
Q Consensus        33 ~~~~~~~~h~-~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~~~   99 (343)
                      .....+.+|. .+|++++|+    +.+|++|+.||+|++||+..++..        ..+..| ..+|.+++|++++    
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~~~----  127 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-AGPISDISWDFEG----  127 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-SSCEEEEEECTTS----
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccc-cCcEEEEEECCCC----
Confidence            3445666774 689999996    579999999999999999765432        234456 7899999999998    


Q ss_pred             CceEEEeeC--CCeEEEEECCCcceeeeeeeccccEEEEEEecCCCE-EEEEeCCCeEEEEEccCCceeEEEE----cCC
Q 019326          100 PRNLFSTSA--DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL-ALTVGRDDCLAMVNLVRGRRSFYHK----IGK  172 (343)
Q Consensus       100 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~----~~~  172 (343)
                       +++++++.  ++.+.+|+.++++++..+.+|...|.+++|+|++.+ +++++.|+.+++||....+......    +..
T Consensus       128 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  206 (325)
T d1pgua1         128 -RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS  206 (325)
T ss_dssp             -SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTC
T ss_pred             -CccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCC
Confidence             67776654  678999999999999999999999999999998865 7789999999999998877554443    235


Q ss_pred             cceEEEEeCC-CCEEEEE-eCCcEEEEEcccceeEEEec-CCcc----eEEeeecCCCeEEEEeCCCcEEEEECCCCcee
Q 019326          173 EASLIKFDGS-GEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKR----ILCAAPGENGVLFTGGEDRSITAWDTNSGKVA  245 (343)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~----i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  245 (343)
                      .+.+++|+|+ +.+++++ .|+.|++||+++++.+..+. |..+    +.++.+.++.+|++++.|+.|+|||+++++++
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            6899999996 5777877 89999999999999998887 4444    45666667889999999999999999999999


Q ss_pred             EEecccccc--cEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          246 YCIEDAHSA--RVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       246 ~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      ..+. .|..  .+..+++.+.+..        +|++++.||.|++||+
T Consensus       287 ~~~~-~~~~~~~~~~~~~~~~~~~--------~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         287 QKWT-LDKQQLGNQQVGVVATGNG--------RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEE-CCTTCGGGCEEEEEEEETT--------EEEEEETTSCEEEEET
T ss_pred             EEEE-ecCCcccCeEEEEEECCCC--------EEEEEECCCEEEEEEC
Confidence            8876 4443  3444444433221        8999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-34  Score=232.68  Aligned_cols=258  Identities=17%  Similarity=0.180  Sum_probs=199.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe-cCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCee---ee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY-PAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSS---LG   76 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~   76 (343)
                      .|++|+.||.|++||+.+       +     +....+ .+|..+|++++|+ ...+++++.|+.+++|+......   ..
T Consensus        26 ~l~s~s~Dg~v~vWd~~~-------~-----~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~   93 (299)
T d1nr0a2          26 TLFSADAEGHINSWDIST-------G-----ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA   93 (299)
T ss_dssp             EEEEEETTSCEEEEETTT-------C-----CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSC
T ss_pred             EEEEEcCCCeEEEEECCC-------C-----cEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccc
Confidence            488999999999999976       2     233333 4799999999999 55677888899999999875432   12


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAM  156 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~  156 (343)
                      ....+ ...+.+++|++++     +.+++ +.++.+.+|+...  .....  ....+.+++|+|+++++++++.|+.|++
T Consensus        94 ~~~~~-~~~~~~~~~s~~g-----~~~~~-~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          94 VANKL-SSQPLGLAVSADG-----DIAVA-ACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             CEEEC-SSCEEEEEECTTS-----SCEEE-EESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccccc-ccccccccccccc-----ccccc-ccccccccccccc--ccccc--cccccccccccccccccccccccccccc
Confidence            22344 6789999999998     55554 5567899999643  22222  3456788999999999999999999999


Q ss_pred             EEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec----CCcceEEeeec-CCCeEEEE
Q 019326          157 VNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD----GKKRILCAAPG-ENGVLFTG  228 (343)
Q Consensus       157 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~-~~~~l~~~  228 (343)
                      ||+++++...  ...+...+.+++|+|++++++++ .++.+++||+.++.......    |..+|.+++|+ ++.+|++|
T Consensus       163 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEE
Confidence            9998876543  44556789999999999999999 89999999999876654433    67899999998 46799999


Q ss_pred             eCCCcEEEEECCCCcee--EEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          229 GEDRSITAWDTNSGKVA--YCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       229 ~~dg~i~i~d~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      +.||.|++||++++...  ......+...+.++.+. ++.         +|++++.||+|++||+.
T Consensus       243 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~---------~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NET---------TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETT---------EEEEEETTSCEEEEECC
T ss_pred             cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCC---------EEEEEeCCCEEEEEecc
Confidence            99999999999876533  33331344567777554 444         89999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-34  Score=238.03  Aligned_cols=244  Identities=16%  Similarity=0.134  Sum_probs=206.1

Q ss_pred             eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC
Q 019326           73 SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD  152 (343)
Q Consensus        73 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~  152 (343)
                      +..+++++| .+.|++++|+|++     ++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++.++++++.|+
T Consensus        46 ~~~~tL~GH-~~~I~~l~~s~~~-----~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  119 (340)
T d1tbga_          46 RTRRTLRGH-LAKIYAMHWGTDS-----RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN  119 (340)
T ss_dssp             CEEEEECCC-SSCEEEEEECTTS-----SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred             eeeEEECCC-CCCEEEEEECCCC-----CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccc
Confidence            456778999 9999999999998     8999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEccCCcee----EEE------------------------------------------EcCCcceEEEEeCCCCEE
Q 019326          153 CLAMVNLVRGRRS----FYH------------------------------------------KIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       153 ~i~~wd~~~~~~~----~~~------------------------------------------~~~~~~~~~~~~~~~~~~  186 (343)
                      .+.+|+.......    ...                                          .....+....+.+.+..+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            9999997543211    000                                          011234566778888888


Q ss_pred             EEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEec-ccccccEEEEEEE
Q 019326          187 FMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVL  262 (343)
Q Consensus       187 ~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~  262 (343)
                      +++ .++.+++||+++++.+..+. |..+|.+++|++ +++|++|+.||.|++||++....+..+. ..|...|.+++|+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence            888 89999999999999999887 788999999984 6799999999999999999988877663 2567789999999


Q ss_pred             ecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          263 TKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       263 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      +++.         +|++|+.||.|++||+.++......    ..+...|++++|+|++.+++.+..|+.++.+
T Consensus       280 ~~~~---------~l~~g~~dg~i~iwd~~~~~~~~~~----~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         280 KSGR---------LLLAGYDDFNCNVWDALKADRAGVL----AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SSSC---------EEEEEETTSCEEEEETTTCCEEEEE----CCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCCC---------EEEEEECCCEEEEEECCCCcEEEEE----cCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            9887         9999999999999999986432211    1245679999999999999999999887654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=234.09  Aligned_cols=280  Identities=20%  Similarity=0.256  Sum_probs=222.6

Q ss_pred             eEEeEEecCCCCCe-EEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           32 LTQLFSYPAHLSPI-TTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        32 ~~~~~~~~~h~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      +++...++||.+.| .|++|+|++|+||+.||+|++||+.+++++..+.+| ...|.+++|+|+       +|++|+.|+
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~~~~-------~l~s~s~D~   77 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDN-------IIISGSTDR   77 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETT-------EEEEEETTS
T ss_pred             CCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-CCCEEEEEeCCC-------ccccceecc
Confidence            45667788999987 467788999999999999999999999999999999 999999999863       799999999


Q ss_pred             eEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-
Q 019326          111 FVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-  189 (343)
Q Consensus       111 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  189 (343)
                      .+++|+............+...+......+  ..+..+..|+.+.+|+..+++................. ....++.+ 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  154 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGA  154 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEE
T ss_pred             cccccccccccceecccccceeEeeeeccc--ccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeec
Confidence            999999988777776666666666665554  47888999999999999999877766655555444444 44455555 


Q ss_pred             eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          190 TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       190 ~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      .++.+++||.+..+.+..+. |...+..+.+ ++.++++|+.||.|++||++.++.+..+. +|...+.++.++++    
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~----  228 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELKDN----  228 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEETT----
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccccC-CCCEEEEEeCCCeEEEeecccceeeeEec-ccccceeEEecCCC----
Confidence            99999999999999888887 5666666666 67899999999999999999999999998 99999998877653    


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcccc
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEEKA  338 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~~~  338 (343)
                             +|++++.||.|++||+........... ...+...+.+++++  +.+++.+..|+.++.++..
T Consensus       229 -------~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         229 -------ILVSGNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             -------EEEEEETTSCEEEEETTTCCEEEEECS-TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             -------EEEEEcCCCEEEEEecccccccccccc-cceeeeceeecccC--CCeeEEEcCCCEEEEEECC
Confidence                   999999999999999987643222211 11223446666654  4577788888877666543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=229.30  Aligned_cols=252  Identities=16%  Similarity=0.230  Sum_probs=203.5

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      .||+|+.||.|+|||+.+            .+++..+++|.++|++++|++++|++|+.|+.|++|++..+........+
T Consensus        27 ~l~sgs~Dg~i~vWd~~~------------~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~   94 (293)
T d1p22a2          27 KIVSGLRDNTIKIWDKNT------------LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH   94 (293)
T ss_dssp             EEEEEESSSCEEEEESSS------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             EEEEEeCCCeEEEEECCC------------CcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccccccc
Confidence            589999999999999987            45677889999999999999999999999999999999998887777655


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcce---eeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVL---LTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVN  158 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd  158 (343)
                       .....  .+.+..     ..++++..++.+.+|+......   ...+..|...+..+.+.+.  .+++++.|+.+++||
T Consensus        95 -~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          95 -CEAVL--HLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWN  164 (293)
T ss_dssp             -CSCEE--EEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEE
T ss_pred             -ccccc--cccccc-----cceeecccccceeEeeccccccccccccccccccccccceeccc--ccccccCCCceeeec
Confidence             33333  333344     5899999999999999976543   3445567788888877654  788999999999999


Q ss_pred             ccCCceeEEEEcC-CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEE
Q 019326          159 LVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSIT  235 (343)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~  235 (343)
                      +++++.+...... ..+..+.+  ++..++++ .|+.+++||+++.+.+.... +...+..+.. ++.+|++|+.||.|+
T Consensus       165 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~  241 (293)
T d1p22a2         165 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIK  241 (293)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEE
T ss_pred             CCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccc-cceEEEEEcCCCEEE
Confidence            9999877665433 34444444  56778888 89999999999999988887 4455555444 678999999999999


Q ss_pred             EEECCC---------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEe
Q 019326          236 AWDTNS---------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWD  290 (343)
Q Consensus       236 i~d~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  290 (343)
                      +||+.+         ...+..+. +|...|++++|++  .         +|+|+|.||+|+|||
T Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~d~--~---------~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         242 VWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQFDE--F---------QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEECS--S---------CEEECCSSSEEEEEC
T ss_pred             EEECCCCccccccCCceeeEEec-CCCCCEEEEEEcC--C---------EEEEEecCCEEEEeC
Confidence            999743         34677787 9999999999853  3         899999999999998

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=227.38  Aligned_cols=277  Identities=19%  Similarity=0.303  Sum_probs=216.4

Q ss_pred             eEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           32 LTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      .+.+.....|...|+|++|++++|+||+.||+|++||+.+++++..+.+| ...|++++|.  +     ++|++|+.|+.
T Consensus         5 ~~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~v~~~--~-----~~l~s~s~D~~   76 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQYD--E-----RVIITGSSDST   76 (293)
T ss_dssp             CCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEECC--S-----SEEEEEETTSC
T ss_pred             EEEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCEeeeecc--c-----ceeeccccccc
Confidence            44455566899999999999999999999999999999999999999999 9999999874  4     68999999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE--c--CCcceEEEEeCCCCEEE
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK--I--GKEASLIKFDGSGEKFF  187 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~  187 (343)
                      |++|++..+........+....  ..+.+....++++..++.+.+|+...........  .  ...+..+.+  ....++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~  152 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV  152 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred             cccccccccccccccccccccc--ccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccc
Confidence            9999999887776666444433  3455566789999999999999998776433222  2  233444444  455666


Q ss_pred             EE-eCCcEEEEEcccceeEEEec-CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecC
Q 019326          188 MV-TEEKVGIHQAEDAKLLCELD-GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKN  265 (343)
Q Consensus       188 ~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~  265 (343)
                      ++ .|+.+++||.++++.+..+. +...+..+.+ ++.++++++.||.|++||+++.+.+..+. +|...+..+  .++.
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~--~~~~  228 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCI--RFDN  228 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEE--ECCS
T ss_pred             cccCCCceeeecCCCCcEEEEEcccccccccccC-CCCeEEEecCCCEEEEEecccceeeeeec-ccceeeeec--cccc
Confidence            66 89999999999999988887 5667777777 46789999999999999999999999888 888888764  3444


Q ss_pred             CCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCC----cccc-cccccceeEEEcCCCCceeccccCCCCCCCc
Q 019326          266 DGGSTAENPYLVASASSDGVICVWDVRMAIKEKPL----PLAE-AKTNSRLTCLAGSSTKSFKRPQIGDSAPKGE  335 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~-~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~  335 (343)
                      .         +|++++.||.|++||+.........    .+.. ..+...|++++++  +.+++.+..|+.++.+
T Consensus       229 ~---------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         229 K---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             S---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEE
T ss_pred             e---------EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEe
Confidence            4         9999999999999999765322211    1111 2345679999984  5678889888877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=227.94  Aligned_cols=277  Identities=16%  Similarity=0.119  Sum_probs=215.0

Q ss_pred             eEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           32 LTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        32 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      .+++++++||.++|++|+|+.  |+||+.||+|++||+.++.     ..| ...|.++.++++.      .+++++.|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h-~~~V~~~~~~~~~------~~~s~s~D~~   68 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-----QDH-SNLIVSLDNSKAQ------EYSSISWDDT   68 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-----CCC-CSCEEEEECCSTT------CCEEEETTTE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-----CCC-CCCEEEEEecCCC------eEEEEeeccc
Confidence            467889999999999999976  9999999999999987643     467 8899999998765      7899999999


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-e
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  190 (343)
                      +++|++...+       ....+..+++++++..+++ +.++.+.+|+..+++..........+  .++++++..++++ .
T Consensus        69 v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~  138 (287)
T d1pgua2          69 LKVNGITKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLE  138 (287)
T ss_dssp             EEETTEEEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEET
T ss_pred             cccccccccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccccee--eeeeccCcceeeecc
Confidence            9999975432       3345677888888766665 45667899999999887776665544  4566777887777 4


Q ss_pred             -CCcEEEEEcccceeEEEec--CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          191 -EEKVGIHQAEDAKLLCELD--GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       191 -~~~i~~~d~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                       ++.+++|++...+....+.  +..++++++|++ +.+|++|+.||.|++||+.+++.......+|..+|.+++|+|.+.
T Consensus       139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccc
Confidence             4579999998777666654  678899999994 579999999999999999998877654448999999999998764


Q ss_pred             C-CCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          267 G-GSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       267 ~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      . .....++.+|++|+.|++|++||++++.  ..... ...+...|++++|++++. ++.+..|+.++.++
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~-~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~  285 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWN  285 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTT--CCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCC--eEEEE-eCCCCCCeEEEEECCCCE-EEEEECCCeEEEEE
Confidence            1 1223456699999999999999998643  11111 123456799999999876 55666788776554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-33  Score=229.92  Aligned_cols=283  Identities=17%  Similarity=0.127  Sum_probs=210.3

Q ss_pred             CCeEEEEec--CceEEEeeCCC-eEEEEEcCCC--eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           43 SPITTVAVS--GTAAASGGTDD-TIHLYDLSTS--SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      ..+++++|+  ++.|+.++.+. .|+.|+....  ..+..+.+|+...|++++|+|..+   +.+|++|+.||+|++||+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~---g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG---SQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT---CCEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCC---CCEEEEEeCCCCEEEeee
Confidence            356788998  78888876544 3566765443  446677787567899999998531   268999999999999999


Q ss_pred             CCcceee--------eeeeccccEEEEEEecCCCEEEEEeC--CCeEEEEEccCCceeEEEE-cCCcceEEEEeCCCCE-
Q 019326          118 DPFVLLT--------SVKVHKKGVNDLAVHHSGKLALTVGR--DDCLAMVNLVRGRRSFYHK-IGKEASLIKFDGSGEK-  185 (343)
Q Consensus       118 ~~~~~~~--------~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-  185 (343)
                      ..++...        .+..|.++|.+++|+++++++++++.  ++.+.+|+..+++.+.... +...+.+++|+|++.. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccce
Confidence            6654332        23457789999999999999888765  6789999999988776654 4578999999999876 


Q ss_pred             EEEE-eCCcEEEEEcccceeEEEec----CCcceEEeeecC--CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEE
Q 019326          186 FFMV-TEEKVGIHQAEDAKLLCELD----GKKRILCAAPGE--NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~~~~~~~~~----~~~~i~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                      ++++ .|+.+++||.+..+....+.    +...|.+++|++  +.++++++.||.|++||+++++.+..+. +|..++.+
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~  253 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQG  253 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCS
T ss_pred             EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-cccccccc
Confidence            4455 79999999999888776654    567799999985  4689999999999999999999999998 88888877


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccCCCCCCCcc
Q 019326          259 IVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIGDSAPKGEE  336 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~~~~~~  336 (343)
                      +.|+...      +++++|++++.|+.|+|||+++++.................++.+.+++ +++++..|+.++.++
T Consensus       254 ~~~s~~~------~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         254 GIFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE  324 (325)
T ss_dssp             CEEEEEE------SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ceeeeec------cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCEEEEEE
Confidence            7776321      1223999999999999999998753332222211111222334444433 567778788776543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-33  Score=230.14  Aligned_cols=279  Identities=9%  Similarity=0.032  Sum_probs=209.6

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE---eccCCCCCeEEEEEeCCCCCCCCceEEEee
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA---IHHHESSSVTSLAFYTPQNLSVPRNLFSTS  107 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~  107 (343)
                      +.+...++|++.|++|+|+  +++||+|+.||+|++||++++.....   ...| ..+|.+++|+|++    +.+|++|+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h-~~~V~~v~f~~~~----~~~l~sg~   76 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY-KHPLLCCNFIDNT----DLQIYVGT   76 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC-SSCEEEEEEEESS----SEEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCC-CCCEEEEEEeCCC----CCEEEEcc
Confidence            3455667999999999998  89999999999999999987644332   2357 8999999999876    26899999


Q ss_pred             CCCeEEEEECCCcceeeeeeeccc-cEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------CCcceEEEE
Q 019326          108 ADGFVSIFDADPFVLLTSVKVHKK-GVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------GKEASLIKF  179 (343)
Q Consensus       108 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~~~~~~  179 (343)
                      .||.|++|+............+.. ......+.++...+++++.++.+++||++.+........       ........+
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM  156 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee
Confidence            999999999988776666654444 444556677788999999999999999986553322221       133456778


Q ss_pred             eCCCCEEEEE-eCCcEEEEEcccceeEEEe----cCCcceEEeeec--CCCeEEEEeCCCcEEEEECCCCcee------E
Q 019326          180 DGSGEKFFMV-TEEKVGIHQAEDAKLLCEL----DGKKRILCAAPG--ENGVLFTGGEDRSITAWDTNSGKVA------Y  246 (343)
Q Consensus       180 ~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~----~~~~~i~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~------~  246 (343)
                      .+.+..++++ .++.+++|+++..+.....    .......+..+.  ++..+++++.||.+.+|+.......      .
T Consensus       157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            8888888888 8999999999876543322    244445555544  4568999999999999998643211      1


Q ss_pred             Ee--------cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          247 CI--------EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       247 ~~--------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      .+        ...|...|++++|+|++.         +|+||+.||.|++||++++++.     ..+........+++++
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~---------~lasg~~Dg~v~vWD~~~~~~l-----~~~~~~~~~~~~~~s~  302 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKI-----KNFAKFNEDSVVKIAC  302 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEE-----EECCCCSSSEEEEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCcc---------EEEEECCCCEEEEEECCCCcEE-----EEecCCCCCEEEEEEe
Confidence            11        025677899999999987         9999999999999999987532     2333334566788888


Q ss_pred             CCceeccccCCC
Q 019326          319 TKSFKRPQIGDS  330 (343)
Q Consensus       319 ~~~~~~~~~~~~  330 (343)
                      ++.+++.+.+++
T Consensus       303 ~~~~l~~a~sdd  314 (342)
T d1yfqa_         303 SDNILCLATSDD  314 (342)
T ss_dssp             CSSEEEEEEECT
T ss_pred             CCCEEEEEEcCC
Confidence            888888887776

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-32  Score=221.60  Aligned_cols=244  Identities=18%  Similarity=0.159  Sum_probs=197.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCCeeeeEeccC
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHH   81 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~   81 (343)
                      |++|+.||.|++||+.+            .     ..+|...|.++++. +..+++++.|+++++|++...+       .
T Consensus        24 l~sgs~Dg~v~~Wd~~~------------~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-------~   79 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSS------------M-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-------F   79 (287)
T ss_dssp             TEEEETTSCEEETTTTE------------E-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-------C
T ss_pred             EEEEeCCCeEEEEECCC------------C-----CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc-------c
Confidence            79999999999999865            1     24799999999999 8889999999999999976432       2


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCC-eEEEEEcc
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDD-CLAMVNLV  160 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~i~~wd~~  160 (343)
                       ...+.++.+.+++      .++..+.++.+.+|+..+++.+..+..+ ..+  .++++++..+++++.++ .+++|++.
T Consensus        80 -~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          80 -GSQPKVASANNDG------FTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             -SSCEEEEEECSSS------EEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             -ccceeeeeeccCC------ceEEEeecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeecc
Confidence             3567788898887      4555566778999999998888887643 333  45667777888887765 79999987


Q ss_pred             CCceeEEEE--cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEe--cCCcceEEeeecC-----------CCe
Q 019326          161 RGRRSFYHK--IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCEL--DGKKRILCAAPGE-----------NGV  224 (343)
Q Consensus       161 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~--~~~~~i~~~~~~~-----------~~~  224 (343)
                      ..+......  +...+.+++|+|++.+++++ .++.+++||+.+++.....  .|..+|.+++|++           +.+
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred             ccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCe
Confidence            665544433  34678999999999999999 8999999999998876543  2788899999863           458


Q ss_pred             EEEEeCCCcEEEEECCCCc-eeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEec
Q 019326          225 LFTGGEDRSITAWDTNSGK-VAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDV  291 (343)
Q Consensus       225 l~~~~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  291 (343)
                      +++|+.|+.|++||++++. .+..+. +|...|++++|++++          .|+|++.||.|++|++
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~~~~~-~h~~~V~~v~~~~~~----------~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPS----------TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETT----------EEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCCeEEEEeC-CCCCCeEEEEECCCC----------EEEEEECCCeEEEEEE
Confidence            9999999999999997744 555555 999999999999875          7999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-32  Score=231.62  Aligned_cols=280  Identities=15%  Similarity=0.083  Sum_probs=199.0

Q ss_pred             EeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCee------eeEeccCCCCCeEEEEEe---CCCCCCCCceEE
Q 019326           34 QLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSS------LGAIHHHESSSVTSLAFY---TPQNLSVPRNLF  104 (343)
Q Consensus        34 ~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~l~~~---~~~~~~~~~~l~  104 (343)
                      .....++|.+.|.++++++++++|++.|++|++||..+.+.      ......| ...+..+...   +... ....+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDA-FELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTT-EEEEEEE
T ss_pred             eeecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeec-cCCceEeeeEeeeccCC-CCCcEEE
Confidence            34556799999999999999999999999999999876532      1222233 3433333221   1110 0114678


Q ss_pred             EeeCCCeEEEEECCCcceeeeee----------eccccEEEEEEecC-----CCEEEEEeCCCeEEEEEccCCce-----
Q 019326          105 STSADGFVSIFDADPFVLLTSVK----------VHKKGVNDLAVHHS-----GKLALTVGRDDCLAMVNLVRGRR-----  164 (343)
Q Consensus       105 s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~i~~~~~-----~~~l~~~~~d~~i~~wd~~~~~~-----  164 (343)
                      +++.||.|++|++........+.          .+...+..++|.++     +.++++++.||.+++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            99999999999975433222211          23456778888775     46899999999999999853210     


Q ss_pred             ---------eEE-E----EcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-------CCcceEEeeecC-
Q 019326          165 ---------SFY-H----KIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-------GKKRILCAAPGE-  221 (343)
Q Consensus       165 ---------~~~-~----~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-------~~~~i~~~~~~~-  221 (343)
                               ... .    .....+.+++|+|++ +++++ .|+.|++||+.+++.+..+.       |..+|.+++|++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                     000 0    112447889999987 77778 89999999999998877654       678899999994 


Q ss_pred             CCeEEEEeCCCc---EEEEECCCCceeEEec------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcE
Q 019326          222 NGVLFTGGEDRS---ITAWDTNSGKVAYCIE------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVI  286 (343)
Q Consensus       222 ~~~l~~~~~dg~---i~i~d~~~~~~~~~~~------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  286 (343)
                      +++|++|+.|++   |++||+.+++.+..+.            .+|...|++++|+|+++         +|+|+|.|++|
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~---------~l~S~s~D~~v  313 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TLCSAGWDGKL  313 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EEEEEETTSEE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC---------eeEEECCCCEE
Confidence            679999998874   9999999998887764            27999999999999887         99999999999


Q ss_pred             EEEeccCccccCCCcccccccccceeEEEcCCCCceecc
Q 019326          287 CVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      +|||++++.......-+..........+++++++..++.
T Consensus       314 ~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             EEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEE
Confidence            999999885433221111111122234667777766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-31  Score=223.95  Aligned_cols=256  Identities=14%  Similarity=0.182  Sum_probs=187.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEe------c---CceEEEeeCCCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAV------S---GTAAASGGTDDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~---~~~l~s~~~dg~i~iwd~~~~   72 (343)
                      .|++|+.|+.|++||.......      .+.........|...+..+..      +   ..++++++.||.|++|++...
T Consensus        26 ~l~S~S~D~~iriWd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~   99 (393)
T d1sq9a_          26 FTVSCSGDGYLKVWDNKLLDNE------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE   99 (393)
T ss_dssp             EEEEEETTSEEEEEESBCCTTC------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred             EEEEEECCCeEEEEECCCCCCC------cccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCC
Confidence            4799999999999997653211      112222233345555443332      2   357889999999999998654


Q ss_pred             eeeeEe----------ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc------------------eee
Q 019326           73 SSLGAI----------HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV------------------LLT  124 (343)
Q Consensus        73 ~~~~~~----------~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------~~~  124 (343)
                      .....+          ..+ ...+..++|.+........++++++.||++++|++....                  ...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (393)
T d1sq9a_         100 DETKKVIFEKLDLLDSDMK-KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE  178 (393)
T ss_dssp             TTTCCEEEEEECCSCTTGG-GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             CceeeeeccccceeeeccC-CCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceeccccee
Confidence            322111          123 456888888877543334789999999999999974211                  011


Q ss_pred             eeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEE-------cCCcceEEEEeCCCCEEEEE-eCC---c
Q 019326          125 SVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHK-------IGKEASLIKFDGSGEKFFMV-TEE---K  193 (343)
Q Consensus       125 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~---~  193 (343)
                      ....+...+.+++|+|++ +|++|+.|++|++||+++++.+....       +...|.+++|+|++++|+++ .|+   .
T Consensus       179 ~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcce
Confidence            112244568899999987 89999999999999999988765544       34679999999999999999 665   4


Q ss_pred             EEEEEcccceeEEEec--------------CCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEE-
Q 019326          194 VGIHQAEDAKLLCELD--------------GKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVK-  257 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~--------------~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~-  257 (343)
                      +++||+++++.+..+.              |...|++++|+ ++++|++|+.|++|++||+++++++.++. +|...|. 
T Consensus       258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-gH~~~v~~  336 (393)
T d1sq9a_         258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEI  336 (393)
T ss_dssp             EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSS
T ss_pred             eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-CcCCcccC
Confidence            8999999998887763              67889999999 46799999999999999999999999998 9987775 


Q ss_pred             ---EEEEEecCC
Q 019326          258 ---GIVVLTKND  266 (343)
Q Consensus       258 ---~~~~~~~~~  266 (343)
                         .+++.+++.
T Consensus       337 ~~~~~~~~~~~~  348 (393)
T d1sq9a_         337 EEDILAVDEHGD  348 (393)
T ss_dssp             GGGCCCBCTTSC
T ss_pred             CccEEEECCCCC
Confidence               355555554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-29  Score=207.90  Aligned_cols=267  Identities=13%  Similarity=0.083  Sum_probs=195.8

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec---CceEEEeeCCCeEEEEEcCCCeeeeEe
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAI   78 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~   78 (343)
                      .||+|+.||+|+|||+...       ..  ........+|.++|++++|+   +.+|++|+.||.|++|+..........
T Consensus        25 ~L~s~s~Dg~v~iwd~~~~-------~~--~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          25 LLLITSWDGSLTVYKFDIQ-------AK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             EEEEEETTSEEEEEEEETT-------TT--EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             EEEEEECCCeEEEEEccCC-------Cc--ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence            4899999999999999862       11  12223334699999999997   458999999999999999988777777


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee----c--cccEEEEEEecCCCEEEEEeCCC
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV----H--KKGVNDLAVHHSGKLALTVGRDD  152 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~--~~~v~~i~~~~~~~~l~~~~~d~  152 (343)
                      ..+.........+.++.     ..+++++.++++++||++..........    +  ......+.+.+.+..+++++.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  170 (342)
T d1yfqa_          96 TNNEANLGICRICKYGD-----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS  170 (342)
T ss_dssp             BSCCCCSCEEEEEEETT-----TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTT
T ss_pred             ccccccccccccccccc-----ccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCC
Confidence            66634444555555555     6999999999999999865443333321    1  22445567788888999999999


Q ss_pred             eEEEEEccCCceeEEE----EcCCcceEEEEe-CCCCEEEEE-eCCcEEEEEcccceeEE---------E-------ecC
Q 019326          153 CLAMVNLVRGRRSFYH----KIGKEASLIKFD-GSGEKFFMV-TEEKVGIHQAEDAKLLC---------E-------LDG  210 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~d~~~~~~~~---------~-------~~~  210 (343)
                      .|++||++..+.....    ..........+. .++..++++ .++.+.+|+........         .       ..+
T Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T d1yfqa_         171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             cEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc
Confidence            9999999877643222    122344444544 456677777 89999999876532111         1       114


Q ss_pred             CcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEE
Q 019326          211 KKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVW  289 (343)
Q Consensus       211 ~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  289 (343)
                      ...+++++|++ +++|++|+.||.|++||+++++.+..+...|  .+..+++++++.         ++++++.|+.+++|
T Consensus       251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~---------~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDN---------ILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSS---------EEEEEEECTHHHHC
T ss_pred             cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCC---------EEEEEEcCCcEEEe
Confidence            56789999995 6799999999999999999999999887334  445567777776         99999999998888


Q ss_pred             eccC
Q 019326          290 DVRM  293 (343)
Q Consensus       290 d~~~  293 (343)
                      ....
T Consensus       320 ~~~~  323 (342)
T d1yfqa_         320 AAID  323 (342)
T ss_dssp             SSSC
T ss_pred             eeeC
Confidence            7643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.97  E-value=3.2e-26  Score=186.61  Aligned_cols=265  Identities=17%  Similarity=0.161  Sum_probs=214.4

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeEec
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGAIH   79 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~   79 (343)
                      .|+++.|+.|.+||+.+            .+.+.+++. ...+..++|+  |++| ++++.++.|++||+.+++.+..+.
T Consensus         5 yV~~~~~~~v~v~D~~t------------~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS------------NKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP   71 (301)
T ss_dssp             EEEETTTTEEEEEETTT------------TEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCEEEEEECCC------------CeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee
Confidence            56788999999999987            234444443 3457889998  6766 567789999999999999999998


Q ss_pred             cCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEE-EEeCCCeEEEEE
Q 019326           80 HHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLAL-TVGRDDCLAMVN  158 (343)
Q Consensus        80 ~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~i~~wd  158 (343)
                      .+  ..+..+.|++++.    ..++++..++.+.+|+..+++....+.. .....+++|+|++..++ ++..++.+.+|+
T Consensus        72 ~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~  144 (301)
T d1l0qa2          72 AG--SSPQGVAVSPDGK----QVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVIN  144 (301)
T ss_dssp             CS--SSEEEEEECTTSS----EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cc--ccccccccccccc----cccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeee
Confidence            77  5678999999982    4556677788999999999888888874 45678899999998765 555688999999


Q ss_pred             ccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEe---CCC
Q 019326          159 LVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGG---EDR  232 (343)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~---~dg  232 (343)
                      ..+............+..+.++|++..++++  ..+.+.+++....+....+.....+..+.++ +++.++.+.   .++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         145 TVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             ccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceee
Confidence            9999988888888889999999999988888  4567888888888888888877778888887 455554443   357


Q ss_pred             cEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE-EEEcCCCcEEEEeccCccccC
Q 019326          233 SITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV-ASASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       233 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~  298 (343)
                      .|++||..+++.+..+.  +...+.+++|+|+++         +| ++++.|+.|++||+++++...
T Consensus       225 ~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~---------~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIP--VGPDPAGIAVTPDGK---------KVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             EEEEEETTTTEEEEEEE--CCSSEEEEEECTTSS---------EEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCC---------EEEEEECCCCeEEEEECCCCeEEE
Confidence            89999999999988887  456789999999887         65 688889999999999886443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.5e-28  Score=203.39  Aligned_cols=258  Identities=10%  Similarity=0.049  Sum_probs=199.0

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCC--eEEEEEcCCCeeeeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDD--TIHLYDLSTSSSLGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg--~i~iwd~~~~~~~~~~   78 (343)
                      +++.+.+|.|++||+..       +.      ...+ +|...|.+++|+  |+.|++++.+.  .|++||.++++.. .+
T Consensus        17 ~~a~~~~g~v~v~d~~~-------~~------~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3          17 LIAFVSRGQAFIQDVSG-------TY------VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             CEEEEETTEEEEECTTS-------SB------EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             EEEEEECCeEEEEECCC-------Cc------EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee
Confidence            34455678999999875       21      1222 699999999999  77888766553  7999999987654 56


Q ss_pred             ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe---------
Q 019326           79 HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG---------  149 (343)
Q Consensus        79 ~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---------  149 (343)
                      ..| ...|.+++|+|++     ++|++++.++.+++|+..+++....+..|...+.+++|+|+|++|+.+.         
T Consensus        82 ~~~-~~~v~~~~~spdg-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          82 EEN-LGNVFAMGVDRNG-----KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             CCC-CCSEEEEEECTTS-----SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             eCC-CceEEeeeecccc-----cccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence            667 8999999999999     8999999999999999999999999999999999999999999998654         


Q ss_pred             -CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeE-------EEec-----------
Q 019326          150 -RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLL-------CELD-----------  209 (343)
Q Consensus       150 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~-------~~~~-----------  209 (343)
                       .++.+++||+.+++..........+..+.|+|+++.|+.+ .++.+.+|+.......       ..+.           
T Consensus       156 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL  235 (360)
T ss_dssp             CCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred             ccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceE
Confidence             3567999999998877666677788899999999999988 7888888876432211       1000           


Q ss_pred             --------------------------CCcceEEeeecCC--------------CeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          210 --------------------------GKKRILCAAPGEN--------------GVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       210 --------------------------~~~~i~~~~~~~~--------------~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                                                .......+...++              .++++++.++.|++||+.+++..    
T Consensus       236 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----  311 (360)
T d1k32a3         236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----  311 (360)
T ss_dssp             CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----
T ss_pred             CCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----
Confidence                                      0011112221111              13455667889999999887642    


Q ss_pred             ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          250 DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       250 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                       .|...|.+++|+|++.         +|++++.||.|++||++++.
T Consensus       312 -~~~~~v~~~~~SpDG~---------~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         312 -EVKNNLTDLRLSADRK---------TVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             -EEEEEEEEEEECTTSC---------EEEEEETTSCEEEEESSCTT
T ss_pred             -EecCCcCEEEECCCCC---------EEEEEECCCeEEEEECCCCC
Confidence             3556789999999887         99999999999999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=8e-27  Score=199.93  Aligned_cols=292  Identities=14%  Similarity=0.013  Sum_probs=208.9

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeE--e
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGA--I   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~--~   78 (343)
                      +|+++.||.|++||+.+            .+.+.+++.|. .+..++|+  |++|++++.|+.|++||+.+++....  +
T Consensus        35 ~V~~~~dg~v~vwD~~t------------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDS------------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  101 (426)
T ss_dssp             EEEETTTTEEEEEETTT------------CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCC------------CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence            57888999999999987            45566677664 58999999  99999999999999999998875432  2


Q ss_pred             c---cCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeecccc-----------EEEEEEecCCC
Q 019326           79 H---HHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHKKG-----------VNDLAVHHSGK  143 (343)
Q Consensus        79 ~---~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~i~~~~~~~  143 (343)
                      .   .| ...+.+++|+|++     +++ +++..++.+.+||..+++++..+..|...           ...+.+++++.
T Consensus       102 ~~~~~~-~~~~~s~~~spDG-----~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2         102 KIGIEA-RSVESSKFKGYED-----RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             ECCSEE-EEEEECCSTTCTT-----TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             eCCCCC-cceEEeeeecCCC-----CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence            2   34 4556677788888     565 55568999999999998888777655443           44555666665


Q ss_pred             EEEEEeC-CCeEEEEEccCCce--eEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC---cceE
Q 019326          144 LALTVGR-DDCLAMVNLVRGRR--SFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK---KRIL  215 (343)
Q Consensus       144 ~l~~~~~-d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~---~~i~  215 (343)
                      .++.... .+.+.+++......  .........+..+.++|++++++++  .+..+.+++..+++........   .+..
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             EEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             EEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence            5544433 35566666555442  3344556778889999999998888  6778999999999988777621   1112


Q ss_pred             Eeeec-C-CC--eEEEEeCCCcEEEEECCC-------CceeEEecccccccEEEEEEEecCCCCCCCCCCeEEE------
Q 019326          216 CAAPG-E-NG--VLFTGGEDRSITAWDTNS-------GKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVA------  278 (343)
Q Consensus       216 ~~~~~-~-~~--~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~------  278 (343)
                      ...+. + ..  ..++.+.|+.+.+|+...       ++....+. +|...+..++++|++.         +|+      
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~~sPdg~---------~l~v~~~~~  325 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSS---------HLYVDTTFN  325 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEECCTTCS---------EEEECCTTC
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEEcCCCCc---------eEEEeecCC
Confidence            22222 2 22  223445678888887654       46778888 9999999999999987         888      


Q ss_pred             -EEcCCCcEEEEeccCccccCCC-ccc----ccccccceeEEEcCCCCcee
Q 019326          279 -SASSDGVICVWDVRMAIKEKPL-PLA----EAKTNSRLTCLAGSSTKSFK  323 (343)
Q Consensus       279 -s~~~dg~i~vwd~~~~~~~~~~-~~~----~~~~~~~i~~~~~s~~~~~~  323 (343)
                       +++.|++|+|||+.+++..... +..    ......++..++|||||+++
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             CCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence             4566899999999987533221 111    11334569999999999866

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.2e-26  Score=192.35  Aligned_cols=271  Identities=14%  Similarity=0.080  Sum_probs=200.8

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC--eEEEEECCCcceeeeeeec
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG--FVSIFDADPFVLLTSVKVH  129 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  129 (343)
                      |+++|+++ +|.|++||+.++..++.  .| ...|.+++|+|++     ++|++++.+.  .|++||.++++. ..+..|
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~~~~~~--~~-~~~v~~~~~spDg-----~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~   84 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGTYVLKV--PE-PLRIRYVRRGGDT-----KVAFIHGTREGDFLGIYDYRTGKA-EKFEEN   84 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEEC--SC-CSCEEEEEECSSS-----EEEEEEEETTEEEEEEEETTTCCE-EECCCC
T ss_pred             CCEEEEEE-CCeEEEEECCCCcEEEc--cC-CCCEEEEEECCCC-----CEEEEEEcCCCCEEEEEECCCCcE-EEeeCC
Confidence            78888876 57999999998876653  56 8899999999999     7887766553  799999988664 456679


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE-e----------CCcEEEE
Q 019326          130 KKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-T----------EEKVGIH  197 (343)
Q Consensus       130 ~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----------~~~i~~~  197 (343)
                      ...|.+++|+|++++|++++.++.+++|++.+++....... ...+..++|+|++++++.+ .          ++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999999999999999999999987766554 4667889999999999876 2          3358899


Q ss_pred             EcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCce-------eEEecccccc---------------
Q 019326          198 QAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKV-------AYCIEDAHSA---------------  254 (343)
Q Consensus       198 d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~h~~---------------  254 (343)
                      +..+++......+...+..+.++ +++.|++++.++.+.+||......       +..+. .|..               
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~  243 (360)
T d1k32a3         165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP-LIPGSPNPTKLVPRSMTSE  243 (360)
T ss_dssp             ETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEE-SSTTCCCGGGCCCGGGSCC
T ss_pred             ccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEe-cccCccccceECCCcCccc
Confidence            99999888777788888888898 567999999999999998754321       11111 1111               


Q ss_pred             ---------------------cEEEEEEEecCC----CCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCccccccccc
Q 019326          255 ---------------------RVKGIVVLTKND----GGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNS  309 (343)
Q Consensus       255 ---------------------~v~~~~~~~~~~----~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  309 (343)
                                           ....+...+.+.    ....++...++++++.++.|++||+.+++.        ..+.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~  315 (360)
T d1k32a3         244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--------TEVKN  315 (360)
T ss_dssp             CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--------EEEEE
T ss_pred             ccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE--------EEecC
Confidence                                 111222111110    000011222456667789999999987531        12234


Q ss_pred             ceeEEEcCCCCceeccccCCCCCCCccccCcc
Q 019326          310 RLTCLAGSSTKSFKRPQIGDSAPKGEEKASME  341 (343)
Q Consensus       310 ~i~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  341 (343)
                      .|.+++||||+++++.+..|+.++..+.++.|
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            58999999999999999999988877655433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=2.7e-24  Score=175.07  Aligned_cols=259  Identities=14%  Similarity=0.114  Sum_probs=207.6

Q ss_pred             EEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeeccccEE
Q 019326           56 ASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHKKGVN  134 (343)
Q Consensus        56 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  134 (343)
                      ++++.|++|.+||+++++.+..+...  ..+..++|+|++     ++| ++++.++.|++||+.+++.+..+..+. .+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG-----~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~   77 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDG-----TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS-----SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCC-----CEEEEEECCCCEEEEEECCCCceeeeeeccc-ccc
Confidence            45678999999999999999998765  567899999999     665 577789999999999999999988665 468


Q ss_pred             EEEEecCCCEEE-EEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCC
Q 019326          135 DLAVHHSGKLAL-TVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGK  211 (343)
Q Consensus       135 ~i~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~  211 (343)
                      .++|++++..++ ++..++.+.+|+..+++..........+..+.++|++..++..  .+..+.+|+..+.+....+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence            899999997655 4556789999999999988888888889999999999988776  6788999999999999999888


Q ss_pred             cceEEeeecC-CCeEEEEe-CCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc---CCCcE
Q 019326          212 KRILCAAPGE-NGVLFTGG-EDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS---SDGVI  286 (343)
Q Consensus       212 ~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~i  286 (343)
                      ..+..+.+++ +..+++++ .++.+.+|+....+....+.  +...+..+++++++.         .++.++   .++.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~---------~~~v~~~~~~~~~v  226 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGT---------KAYVTNVDKYFNTV  226 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSS---------EEEEEEECSSCCEE
T ss_pred             CCceEEEeeccccceeeecccccccccccccceeeeeccc--ccCCcceeecccccc---------ccccccccceeeee
Confidence            8888888884 45555555 45678888888777776666  556678889988877         555443   45789


Q ss_pred             EEEeccCccccCCCcccccccccceeEEEcCCCCcee-ccccCCCCCCCcccc
Q 019326          287 CVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFK-RPQIGDSAPKGEEKA  338 (343)
Q Consensus       287 ~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~-~~~~~~~~~~~~~~~  338 (343)
                      ++||+.+++.     +..+.....+.+++++||++++ +.+..++.+..++..
T Consensus       227 ~v~D~~t~~~-----~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         227 SMIDTGTNKI-----TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEETTTTEE-----EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeecCCCeE-----EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            9999998753     2334455678999999999976 566777777666544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=4.3e-25  Score=188.87  Aligned_cols=296  Identities=13%  Similarity=-0.007  Sum_probs=202.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCee--eeEe
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSS--LGAI   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~   78 (343)
                      +++.+.+|.|.|||..+            .+.+..+..| ..+..++|+  |+++++++.||.|++||+.+++.  ...+
T Consensus        35 ~v~~~d~g~v~v~D~~t------------~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          35 SVTLRDAGQIALIDGST------------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             EEEETTTTEEEEEETTT------------CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             EEEEcCCCEEEEEECCC------------CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEE
Confidence            58899999999999987            4556666666 469999999  89999999999999999988763  3333


Q ss_pred             c---cCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeec-----------cccEEEEEEecCCC
Q 019326           79 H---HHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVH-----------KKGVNDLAVHHSGK  143 (343)
Q Consensus        79 ~---~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~  143 (343)
                      .   .| ...+.+..|+|++     ++| +++..+++|++||..+++++..+..|           ......+.++|++.
T Consensus       102 ~~~~~~-~~~~~s~~~SpDG-----~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         102 KIGSEA-RSIETSKMEGWED-----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             ECCSEE-EEEEECCSTTCTT-----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ecCCCC-CCeEEecccCCCC-----CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence            3   33 4556666778888     554 78888999999999999988877643           34567789999987


Q ss_pred             EE-EEEeCCCeEEEEEccCCceeE--EEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecC------Cc
Q 019326          144 LA-LTVGRDDCLAMVNLVRGRRSF--YHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDG------KK  212 (343)
Q Consensus       144 ~l-~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~------~~  212 (343)
                      .+ ++...++.|.+||..+.+...  .......+..++++|++++++++  .++.+.++|..+++....+..      ..
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~  255 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG  255 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccC
Confidence            65 556668999999998877543  44556778899999999988888  677899999999888877652      23


Q ss_pred             ceEEeeecCCC-eEEEE-eCCCcEEEEECCCCc-------eeEEecccccccEEEEEEEecCC---------------CC
Q 019326          213 RILCAAPGENG-VLFTG-GEDRSITAWDTNSGK-------VAYCIEDAHSARVKGIVVLTKND---------------GG  268 (343)
Q Consensus       213 ~i~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~---------------~~  268 (343)
                      ........... ...+. ..++.|.+|+..+..       ....+. .+......++.+|+..               ..
T Consensus       256 ~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~-~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s  334 (432)
T d1qksa2         256 RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP-ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  334 (432)
T ss_dssp             TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             cccceecCCCCceecccccCCceEEecccccccccccccEEEEEEE-cCCCCeEEEEecCCccceeecccCCCCCCeeeE
Confidence            33333443333 23332 237788888765432       222222 1111111111111000               00


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceecc
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~  325 (343)
                      ...+|++.+++++.|+.+++|++.++.     .+.  .+..++.+++|||||+++..
T Consensus       335 v~vpDg~~la~~s~d~~~k~w~~~~~~-----~l~--~~~~~v~~~~fS~DG~~v~~  384 (432)
T d1qksa2         335 VAVFDIKAMTGDGSDPEFKTLPIAEWA-----GIT--EGQPRVVQGEFNKDGTEVWF  384 (432)
T ss_dssp             EEEEEGGGCCCSSSCCCEEEECHHHHH-----TCC--SSCCEEEEEEECTTSSEEEE
T ss_pred             EEEEechhhcccccCCceEeccccccc-----ccC--CCCCcEEEeEECCCCCEEEE
Confidence            001333488889999999999886652     111  34456899999999987733

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=8.6e-25  Score=180.80  Aligned_cols=263  Identities=14%  Similarity=0.066  Sum_probs=194.7

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEec--CCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYP--AHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      |++++.|+.|++||+.+            .+.+..++  .+...+.+++|+  |+++ ++++.++.|.+||+.+++.+..
T Consensus         4 ~vt~~~d~~v~v~D~~s------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~   71 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEK------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR   71 (337)
T ss_dssp             EEEEETTTEEEEEETTT------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCEEEEEECCC------------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            78999999999999987            23444443  345567899998  6776 5677899999999999999888


Q ss_pred             eccCC----CCCeEEEEEeCCCCCCCCceEEEeeC------------CCeEEEEECCCcceeeeeeeccccEEEEEEecC
Q 019326           78 IHHHE----SSSVTSLAFYTPQNLSVPRNLFSTSA------------DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHS  141 (343)
Q Consensus        78 ~~~~~----~~~v~~l~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~  141 (343)
                      +..+.    ...+..++|+|++     ++++++..            +..+.+||..+++....+.. ...+..++|+|+
T Consensus        72 ~~~~~~~~~~~~~~~v~~s~dg-----~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~d  145 (337)
T d1pbyb_          72 IDLSTPEERVKSLFGAALSPDG-----KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD  145 (337)
T ss_dssp             EECCBTTEEEECTTCEEECTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT
T ss_pred             EecCCCcccccceeeEEEcCCC-----cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCC
Confidence            76551    1234578999999     67777653            57899999999888888774 456788999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEE------------------------EEE-eCCcEEE
Q 019326          142 GKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKF------------------------FMV-TEEKVGI  196 (343)
Q Consensus       142 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~-~~~~i~~  196 (343)
                      ++++++++.+  +.+||..+++...............+.+++..+                        ... .++.+.+
T Consensus       146 g~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         146 GSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             SSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            9999988754  778999998877666554332222222222211                        111 2345888


Q ss_pred             EEcccceeEEEe--cCCcceEEeeecCC-CeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          197 HQAEDAKLLCEL--DGKKRILCAAPGEN-GVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       197 ~d~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                      |+..++......  .+...+..+.+++. .+++.+  ++.|++||+.+++.+..+.  +...+.+++|+|++.       
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~-------  292 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGS-------  292 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSC-------
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCC-------
Confidence            888887655432  25566777777754 455444  5899999999999999887  677889999999988       


Q ss_pred             CeEEEEEcCCCcEEEEeccCccccC
Q 019326          274 PYLVASASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~~~~~  298 (343)
                        +|++++.|+.|+|||+++.+...
T Consensus       293 --~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         293 --TVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             --EEEEESBSSEEEEEETTTCCEEE
T ss_pred             --EEEEEeCCCcEEEEECCCCcEEE
Confidence              99999999999999999875443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=9.1e-24  Score=174.55  Aligned_cols=267  Identities=10%  Similarity=0.005  Sum_probs=204.4

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCC-CCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceeeeeeecc
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHE-SSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLTSVKVHK  130 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~  130 (343)
                      +++++++.|++|++||+++++.+..+..+. ...+.+++|+|++     +++ ++++.++.|.+||+.+++.+..+..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg-----~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-----RIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS-----SEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC-----CEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            589999999999999999999999886542 3567899999998     665 567789999999999999988887654


Q ss_pred             c-----cEEEEEEecCCCEEEEEe------------CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCc
Q 019326          131 K-----GVNDLAVHHSGKLALTVG------------RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEK  193 (343)
Q Consensus       131 ~-----~v~~i~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (343)
                      .     .+..++|+|++++++++.            .+..+.+||..+++..........+..++++|++++++++. +.
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~  155 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RD  155 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SS
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CC
Confidence            3     445789999999988876            36788999999999888888888899999999999998873 45


Q ss_pred             EEEEEcccceeEEEecCCcceEE-------eeec------------------CCCeEEEEeCCCcEEEEECCCCceeEEe
Q 019326          194 VGIHQAEDAKLLCELDGKKRILC-------AAPG------------------ENGVLFTGGEDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~~~~~i~~-------~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~  248 (343)
                      +.+||..+++....+........       ..+.                  +......+..++.+.+||..++......
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            78899999988877753211100       0000                  1111222334556999999988866544


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ...+...+..+.+++++.         +++.+  ++.|++||+.++..     +........+.+++++||+++++.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~---------~~~~~--~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~s~dG~~l~v~~~  299 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNAS-----IKRVPLPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             EEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEE-----EEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred             ecCCCcceEEEEecccce---------EEEEc--cccEEEEECCCCcE-----EEEEcCCCCEEEEEECCCCCEEEEEeC
Confidence            336777888888888876         76665  58999999998753     333445667899999999999999988


Q ss_pred             CCCCCCccccCcc
Q 019326          329 DSAPKGEEKASME  341 (343)
Q Consensus       329 ~~~~~~~~~~~~~  341 (343)
                      ++.+..++....|
T Consensus       300 ~~~i~v~D~~t~~  312 (337)
T d1pbyb_         300 LGDLAAYDAETLE  312 (337)
T ss_dssp             SSEEEEEETTTCC
T ss_pred             CCcEEEEECCCCc
Confidence            8877777665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=7.6e-23  Score=169.58  Aligned_cols=265  Identities=12%  Similarity=0.016  Sum_probs=191.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEec-CCCCCeEEEEec--CceE-EEeeCCCeEEEEEcCCCeeeeE
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYP-AHLSPITTVAVS--GTAA-ASGGTDDTIHLYDLSTSSSLGA   77 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~   77 (343)
                      .|++++.++.|.+||+.+            .+.+.+++ .|...+.+++|+  |+++ +++..++.|++||+.+++.+..
T Consensus        10 ~l~~~~~~~~v~v~D~~t------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_          10 YMIVTNYPNNLHVVDVAS------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             EEEEEETTTEEEEEETTT------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCEEEEEECCC------------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            378999999999999987            34455554 355678899998  6665 5666889999999999998887


Q ss_pred             eccCC-----CCCeEEEEEeCCCCCCCCceEEEee------------CCCeEEEEECCCcceeeeeeecc--ccEEEEEE
Q 019326           78 IHHHE-----SSSVTSLAFYTPQNLSVPRNLFSTS------------ADGFVSIFDADPFVLLTSVKVHK--KGVNDLAV  138 (343)
Q Consensus        78 ~~~~~-----~~~v~~l~~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~  138 (343)
                      +....     ...+..++|+|++     +++++++            .++.+.+|+..+++....+..+.  ..+..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG-----~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDG-----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  152 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTS-----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             ecccccccccCCceEEEEEecCC-----CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe
Confidence            75431     1235678999999     6776664            46789999998877666554432  35566677


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE---------------------------eC
Q 019326          139 HHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV---------------------------TE  191 (343)
Q Consensus       139 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~  191 (343)
                      ++++..++++   +.+.+|++.+++.............+.++|++..++..                           ..
T Consensus       153 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (346)
T d1jmxb_         153 ADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  229 (346)
T ss_dssp             CTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             cCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence            7777665543   45899999998887776655555445555544433222                           34


Q ss_pred             CcEEEEEcccceeEEEe--cCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCC
Q 019326          192 EKVGIHQAEDAKLLCEL--DGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGG  268 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~--~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  268 (343)
                      ..+.+|+..++......  .+...+..+.++ ++.+++... ++.|.+||..+++.+..+.  +...+.+++|+|++.  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~--  304 (346)
T d1jmxb_         230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGD--  304 (346)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSS--
T ss_pred             ceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCC--
Confidence            45677777776655443  256667777766 455665554 4679999999999998887  556799999999988  


Q ss_pred             CCCCCCeEEEEEcCCCcEEEEeccCccccC
Q 019326          269 STAENPYLVASASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       269 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  298 (343)
                             +|++++.||.|++||+++.+...
T Consensus       305 -------~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         305 -------KLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             -------CEEEESBSSEEEEEETTTTEEEE
T ss_pred             -------EEEEEeCCCcEEEEECccCCEEE
Confidence                   99999999999999999876443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=2.2e-22  Score=166.74  Aligned_cols=271  Identities=9%  Similarity=0.006  Sum_probs=199.1

Q ss_pred             EEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceE-EEeeCCCeEEEEECCCcceee
Q 019326           48 VAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNL-FSTSADGFVSIFDADPFVLLT  124 (343)
Q Consensus        48 l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~  124 (343)
                      ++|+  +++|++++.+++|.+||+.+++.+..+..++...+.+++|+|++     +++ +++..++.|.+||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG-----~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-----RTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-----SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCC-----CEEEEEECCCCcEEEEeCccCeeee
Confidence            3565  78999999999999999999999998874325678899999998     555 666789999999999998887


Q ss_pred             eeeecc------ccEEEEEEecCCCEEEEEe------------CCCeEEEEEccCCceeE---EEEcCCcceEEEEeCCC
Q 019326          125 SVKVHK------KGVNDLAVHHSGKLALTVG------------RDDCLAMVNLVRGRRSF---YHKIGKEASLIKFDGSG  183 (343)
Q Consensus       125 ~~~~~~------~~v~~i~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~  183 (343)
                      .+....      ..+..++|+|+|+++++++            .++.+.+||..+++...   ....+..+..+.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            775332      2456799999999888775            47789999998876432   33344556667777777


Q ss_pred             CEEEEEeCCcEEEEEcccceeEEEecCCcceEEeeec---------------------------CCCeEEEEeCCCcEEE
Q 019326          184 EKFFMVTEEKVGIHQAEDAKLLCELDGKKRILCAAPG---------------------------ENGVLFTGGEDRSITA  236 (343)
Q Consensus       184 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~---------------------------~~~~l~~~~~dg~i~i  236 (343)
                      ..++.  +..+.+|+..+++....+........+.++                           ....++++..++.+.+
T Consensus       157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         157 SLYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             CEEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EEEEe--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            65543  466899999998888877633222222221                           1123334455667889


Q ss_pred             EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEc
Q 019326          237 WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAG  316 (343)
Q Consensus       237 ~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~  316 (343)
                      ||..++.........|...+..+.+++++.         +++... ++.|.+||+.+++     .+........+.++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~v~v~d~~~~~-----~~~~~~~~~~~~~va~  299 (346)
T d1jmxb_         235 VDLKTGKTHTQEFADLTELYFTGLRSPKDP---------NQIYGV-LNRLAKYDLKQRK-----LIKAANLDHTYYCVAF  299 (346)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECSSCT---------TEEEEE-ESEEEEEETTTTE-----EEEEEECSSCCCEEEE
T ss_pred             EECCCCceEEEEeecccceeEEEEEeCCCC---------EEEEec-CCeEEEEECCCCc-----EEEEEcCCCCEEEEEE
Confidence            999988876655447888899999988876         566555 4689999999875     3333444567999999


Q ss_pred             CCCCceeccccCCCCCCCccccCc
Q 019326          317 SSTKSFKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       317 s~~~~~~~~~~~~~~~~~~~~~~~  340 (343)
                      +||+++++.+..++.+..++....
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cCCCCEEEEEeCCCcEEEEECccC
Confidence            999999999988888777766544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.2e-20  Score=159.38  Aligned_cols=225  Identities=14%  Similarity=0.068  Sum_probs=167.7

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee--eee---ee
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL--TSV---KV  128 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~---~~  128 (343)
                      ++++.+.||+|.+||..+++.+..+..+  ..+..++|+|++     +++++++.|++|++||+.+++..  ..+   ..
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG-----~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCC-----CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            3588999999999999999999999887  469999999999     89999999999999999876632  233   34


Q ss_pred             ccccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCceeEEEEc------------CCcceEEEEeCCCCEEEEE--eCCc
Q 019326          129 HKKGVNDLAVHHSGKLA-LTVGRDDCLAMVNLVRGRRSFYHKI------------GKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      |.+.+.+.+|+|||++| ++++.++.|++||..+++.+.....            ......+.++|++..++.+  .++.
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence            66677777888999876 6788899999999999987765442            2345568899999988766  6889


Q ss_pred             EEEEEcccceeE--EEecCCcceEEeeecC-CCeEEEEe-CCCcEEEEECCCCceeEEeccc----ccccEEEEEEEecC
Q 019326          194 VGIHQAEDAKLL--CELDGKKRILCAAPGE-NGVLFTGG-EDRSITAWDTNSGKVAYCIEDA----HSARVKGIVVLTKN  265 (343)
Q Consensus       194 i~~~d~~~~~~~--~~~~~~~~i~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----h~~~v~~~~~~~~~  265 (343)
                      +.+|+..+.+..  ..+.+...+..+.+++ ++++++++ .++.+.++|..+++.+..+..+    |........+...+
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            999999887644  4556677788999985 56555554 5678999999998887776521    22333333332222


Q ss_pred             CCCCCCCCCeEEEEEc-CCCcEEEEeccCc
Q 019326          266 DGGSTAENPYLVASAS-SDGVICVWDVRMA  294 (343)
Q Consensus       266 ~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~  294 (343)
                      .         ..++.. .|+.|.+|+....
T Consensus       267 ~---------~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         267 P---------VWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             E---------EEEEEBSSSSEEEEEECCTT
T ss_pred             c---------eecccccCCceEEecccccc
Confidence            1         333332 4778888876643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.1e-20  Score=161.29  Aligned_cols=260  Identities=10%  Similarity=0.030  Sum_probs=183.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeee-----e
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSV-----K  127 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~  127 (343)
                      -++++.+.||.|++||+.+++.+..+..+  ..+..++|+|++     +++++++.|++|++||+.+++.....     .
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDG-----k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASG-----RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTS-----CEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCC-----CEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            35677889999999999999999999987  469999999999     89999999999999999888754332     2


Q ss_pred             eccccEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeEEEEc------------CCcceEEEEeCCCCEEEEE--eCC
Q 019326          128 VHKKGVNDLAVHHSGKLALTV-GRDDCLAMVNLVRGRRSFYHKI------------GKEASLIKFDGSGEKFFMV--TEE  192 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~~  192 (343)
                      +|...+.+++|+|||++++++ ..++.+.+||..++........            ......+..++++..++..  ..+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            566677788889999987554 5789999999999887655432            2334557778888877776  456


Q ss_pred             cEEEEEcccce--eEEEecCCcceEEeeecC-CCeEEEE-eCCCcEEEEECCCCceeEEeccc-ccccEEEEEEEecCCC
Q 019326          193 KVGIHQAEDAK--LLCELDGKKRILCAAPGE-NGVLFTG-GEDRSITAWDTNSGKVAYCIEDA-HSARVKGIVVLTKNDG  267 (343)
Q Consensus       193 ~i~~~d~~~~~--~~~~~~~~~~i~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~  267 (343)
                      .+.+++.....  .+..+.+...+..+.+++ +++++++ ..+..+.+++..+++.+.....+ +..+...+.+......
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            66666666554  334455777888899984 4555544 56778999999999888776621 2223334444444321


Q ss_pred             CCCCCCCeEEEEEcCCCcEEEEeccCccccCC--Cccccc-ccccceeEEEcCCCCceecc
Q 019326          268 GSTAENPYLVASASSDGVICVWDVRMAIKEKP--LPLAEA-KTNSRLTCLAGSSTKSFKRP  325 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~~~~  325 (343)
                            ....++.+.|+.+.+|+.........  ...... .+...+..++++|++++++.
T Consensus       266 ------~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         266 ------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             ------EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             ------ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence                  01334556789999998876421110  011111 23456899999999999884

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-18  Score=142.88  Aligned_cols=287  Identities=12%  Similarity=0.101  Sum_probs=189.5

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee-CCCeEEEEEcCCCeeeeEe-
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG-TDDTIHLYDLSTSSSLGAI-   78 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~-   78 (343)
                      +++++.|+.|++|++..       ...  .+.+..+ .|.+.+..|+|+  |++|++++ .|+.|++|++........+ 
T Consensus         7 ~v~~~~~~~I~v~~~~~-------~~~--l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~   76 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNH-------EGA--LTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA   76 (333)
T ss_dssp             EEEEGGGTEEEEEEECT-------TSC--EEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEECCCCCcEEEEEEcC-------CCC--eEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe
Confidence            57888999999999976       222  2333333 477899999999  78885554 5899999999866433222 


Q ss_pred             --ccCCCCCeEEEEEeCCCCCCCCceEEEeeC-CCeEEEEECCCcceeee--eeeccccEEEEEEecCCCEEEEEeC-CC
Q 019326           79 --HHHESSSVTSLAFYTPQNLSVPRNLFSTSA-DGFVSIFDADPFVLLTS--VKVHKKGVNDLAVHHSGKLALTVGR-DD  152 (343)
Q Consensus        79 --~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~-d~  152 (343)
                        ..+ ...+..++|+|++     ++|++++. ++.|.+|+.........  ...+...+.++.++|+++++++++. +.
T Consensus        77 ~~~~~-~~~p~~l~~spDg-----~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~  150 (333)
T d1ri6a_          77 AESAL-PGSLTHISTDHQG-----QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD  150 (333)
T ss_dssp             EEEEC-SSCCSEEEECTTS-----SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             eeccc-CCCceEEEEcCCC-----CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence              223 4567789999999     77887775 77899998866544333  3345667888999999998887775 56


Q ss_pred             eEEEEEccCCceeEEE-------EcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccce----eEEEec-------CCc
Q 019326          153 CLAMVNLVRGRRSFYH-------KIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAK----LLCELD-------GKK  212 (343)
Q Consensus       153 ~i~~wd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~----~~~~~~-------~~~  212 (343)
                      .+.+|+..........       .....+..++|++++..++..  ..+...+++.....    ......       ...
T Consensus       151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence            7999998776533221       123456789999999988777  56677787764322    111221       223


Q ss_pred             ceEEeeec-CCC-eEEEEeCCCcEEEEECCCCceeEEec--ccccccEEEEEEEecCCCCCCCCCCeEEEEEc-CCCcEE
Q 019326          213 RILCAAPG-ENG-VLFTGGEDRSITAWDTNSGKVAYCIE--DAHSARVKGIVVLTKNDGGSTAENPYLVASAS-SDGVIC  287 (343)
Q Consensus       213 ~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~  287 (343)
                      ....+.++ +++ .++++..++.+.+|++........+.  ..+...+.+++|+|+++         +|++++ .++.|+
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk---------~l~va~~~~~~v~  301 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK---------YLIAAGQKSHHIS  301 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS---------EEEEECTTTCEEE
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC---------EEEEEECCCCeEE
Confidence            45556666 444 45556678899999987654443332  12445678899999887         776664 568999


Q ss_pred             EEeccC--ccccCCCcccccccccceeEEEcC
Q 019326          288 VWDVRM--AIKEKPLPLAEAKTNSRLTCLAGS  317 (343)
Q Consensus       288 vwd~~~--~~~~~~~~~~~~~~~~~i~~~~~s  317 (343)
                      +|+++.  +..   ..+..+..+....|++++
T Consensus       302 v~~id~~tG~l---~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         302 VYEIVGEQGLL---HEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             EEEEETTTTEE---EEEEEEECSSSCCEEEEE
T ss_pred             EEEEECCCCcE---EEEEeccCCCCCcEEEEE
Confidence            997653  321   123344444445555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.8e-18  Score=140.24  Aligned_cols=266  Identities=9%  Similarity=0.084  Sum_probs=176.6

Q ss_pred             eEEEeeCCCeEEEEEcCCCeeeeEe--ccCCCCCeEEEEEeCCCCCCCCceEEE-eeCCCeEEEEECCCcceeeeee---
Q 019326           54 AAASGGTDDTIHLYDLSTSSSLGAI--HHHESSSVTSLAFYTPQNLSVPRNLFS-TSADGFVSIFDADPFVLLTSVK---  127 (343)
Q Consensus        54 ~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~---  127 (343)
                      .+++++.|++|++|++++...+..+  ..+ ...+..|+|+|++     ++|++ +..|+.|++|++........+.   
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~-~~~v~~la~spDG-----~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDV-PGQVQPMVVSPDK-----RYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSCCCCEEECTTS-----SEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcC-CCCEeEEEEeCCC-----CEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            3577789999999999765433333  245 6889999999999     67754 4558999999997655443332   


Q ss_pred             eccccEEEEEEecCCCEEEEEeC-CCeEEEEEccCCceeEEE---EcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccc
Q 019326          128 VHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLVRGRRSFYH---KIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAED  201 (343)
Q Consensus       128 ~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~  201 (343)
                      .+...+..++|+|+|++|++++. ++.+.+|+..........   .....+..+.++|++++++.+  .+..+.+|+...
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            23446778999999999998875 678999998776644333   234567889999999998888  667799999876


Q ss_pred             ceeEEEe-------cCCcceEEeeecC-CCeEE-EEeCCCcEEEEECCCCc----eeEEec---c--cccccEEEEEEEe
Q 019326          202 AKLLCEL-------DGKKRILCAAPGE-NGVLF-TGGEDRSITAWDTNSGK----VAYCIE---D--AHSARVKGIVVLT  263 (343)
Q Consensus       202 ~~~~~~~-------~~~~~i~~~~~~~-~~~l~-~~~~dg~i~i~d~~~~~----~~~~~~---~--~h~~~v~~~~~~~  263 (343)
                      .......       ........+.+++ +..++ +....+...+|+.....    ....+.   .  ........+++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            4332211       1344567788874 34444 44566778888865432    111221   0  1234566777887


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCCCceeccccC-CCCCCC
Q 019326          264 KNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKSFKRPQIG-DSAPKG  334 (343)
Q Consensus       264 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~-~~~~~~  334 (343)
                      ++.        ..++++..++.+.+|++....... ...........+..++|+|||++++.... ++.+..
T Consensus       240 d~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         240 DGR--------HLYACDRTASLITVFSVSEDGSVL-SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             TSS--------EEEEEETTTTEEEEEEECTTSCCE-EEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             ccC--------ceeeecccCCeEEEEEEcCCCCEE-EEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            776        245566778899999997653211 11122233456788999999998765543 444443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=3.2e-17  Score=137.06  Aligned_cols=256  Identities=13%  Similarity=0.015  Sum_probs=176.4

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEee----------CCCeEEEEEcCCCeee
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGG----------TDDTIHLYDLSTSSSL   75 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~----------~dg~i~iwd~~~~~~~   75 (343)
                      ..+.|++||..+            .+.+.++..+..+  .++|+  |.+|++++          .++.|.+||..+++.+
T Consensus        45 ~~~~v~v~D~~t------------g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~  110 (373)
T d2madh_          45 AIIQQWVLDAGS------------GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI  110 (373)
T ss_pred             CCceEEEEECCC------------CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE
Confidence            346788898776            3344455555544  67888  88888764          4678999999999998


Q ss_pred             eEeccCCCCCe-------EEEEEeCCCCCCCCceEEEe--eCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCE-E
Q 019326           76 GAIHHHESSSV-------TSLAFYTPQNLSVPRNLFST--SADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKL-A  145 (343)
Q Consensus        76 ~~~~~~~~~~v-------~~l~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l  145 (343)
                      ..+..+ ....       ..+.|++++     +.++..  ..++.+.+|+....+....    .....++.++|+++. +
T Consensus       111 ~~~~~~-~~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~  180 (373)
T d2madh_         111 ADIELP-DAPRFDVGPYSWMNANTPNN-----ADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTF  180 (373)
T ss_pred             EEEecC-CcceeEeccCCCcEEEEeCC-----CcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEE
Confidence            888766 3333       446778887     444433  4456788888877654433    334567889999864 5


Q ss_pred             EEEeCCCeEEEEEccCCceeEEEEcC-------CcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEec---C-----
Q 019326          146 LTVGRDDCLAMVNLVRGRRSFYHKIG-------KEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELD---G-----  210 (343)
Q Consensus       146 ~~~~~d~~i~~wd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~-----  210 (343)
                      ++.+.|+.+.+|+...+.........       .......+.+++..++...++.+.+|+...........   .     
T Consensus       181 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  260 (373)
T d2madh_         181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEE
Confidence            67889999999999887765443321       12234556666666666688889998887765332221   0     


Q ss_pred             -----CcceEEeee-----------cCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCC
Q 019326          211 -----KKRILCAAP-----------GENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENP  274 (343)
Q Consensus       211 -----~~~i~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  274 (343)
                           ......+.+           .++..++....++.+.+||..+++.+..+.  +...+.+++|+|+++..      
T Consensus       261 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~------  332 (373)
T d2madh_         261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPD------  332 (373)
T ss_pred             eeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECCCCCEE------
Confidence                 011111222           234455667778899999999999999887  77789999999987621      


Q ss_pred             eEEEEEcCCCcEEEEeccCccc
Q 019326          275 YLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       275 ~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                       ++++++.|+.|++||+.+++.
T Consensus       333 -l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         333 -LYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             -EEEEeCCCCeEEEEECCCCCE
Confidence             356889999999999999863

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=3.8e-17  Score=136.56  Aligned_cols=286  Identities=10%  Similarity=0.021  Sum_probs=197.1

Q ss_pred             cCCCCCeEEEEec--CceEEEe-----eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----
Q 019326           39 PAHLSPITTVAVS--GTAAASG-----GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----  107 (343)
Q Consensus        39 ~~h~~~v~~l~~~--~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----  107 (343)
                      ..+.+++.+++++  +..++..     +..+.|.+||..+++.+..+..+ ..  ..++|+|++     ++|++++    
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~--~~~a~SpDG-----~~l~va~~~~~   88 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FL--PNPVAAHSG-----SEFALASTSFS   88 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CC--ccEEEcCCC-----CEEEEEeecCC
Confidence            4688899999998  7776653     23467999999999999988766 33  379999999     7777764    


Q ss_pred             ------CCCeEEEEECCCcceeeeeeeccccE-------EEEEEecCCCEEEEEe--CCCeEEEEEccCCceeEEEEcCC
Q 019326          108 ------ADGFVSIFDADPFVLLTSVKVHKKGV-------NDLAVHHSGKLALTVG--RDDCLAMVNLVRGRRSFYHKIGK  172 (343)
Q Consensus       108 ------~dg~i~iwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~  172 (343)
                            .++.|.+||..+++.+..+..+....       ..+.|+++++.++...  .++.+.+|+....+....   ..
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~  165 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL---LS  165 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE---ec
Confidence                  46789999999999988887665433       4578888887665554  456788888877654333   23


Q ss_pred             cceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecC-------CcceEEeeecCCCeEEEEeCCCcEEEEECCCCc
Q 019326          173 EASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDG-------KKRILCAAPGENGVLFTGGEDRSITAWDTNSGK  243 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~-------~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  243 (343)
                      .+.++.++|+++.++++  .++.+.+|+...++.......       ........+.++..++..+.++.+.+|+..++.
T Consensus       166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            45678899999876544  899999999998877765541       122334445556667777889999999988765


Q ss_pred             eeEEec-ccccc----------cEEEEEEEecCCCC-CCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccce
Q 019326          244 VAYCIE-DAHSA----------RVKGIVVLTKNDGG-STAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRL  311 (343)
Q Consensus       244 ~~~~~~-~~h~~----------~v~~~~~~~~~~~~-~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i  311 (343)
                      ...... ..+..          ....+++++++... ....++..+++...++.+.+||+.+++.     +........+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-----~~~~~~~~~~  320 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-----SSQISLGHDV  320 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-----EEEecCCCCe
Confidence            332211 02222          22334444444310 0112233566777788999999998753     3344555678


Q ss_pred             eEEEcCCCCc--eeccccCCCCCCCccccCc
Q 019326          312 TCLAGSSTKS--FKRPQIGDSAPKGEEKASM  340 (343)
Q Consensus       312 ~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~  340 (343)
                      ..++|+||++  +.+.+..++.+..++....
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            9999999988  4467888888877766543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.5e-16  Score=131.81  Aligned_cols=257  Identities=11%  Similarity=0.014  Sum_probs=166.5

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEe----------eCCCeEEEEEcCCCee
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASG----------GTDDTIHLYDLSTSSS   74 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~----------~~dg~i~iwd~~~~~~   74 (343)
                      ..++.|++||..+            .+.+.++..+..+  .++|+  |++|++.          ..|+.|++||..+++.
T Consensus        25 ~~~~~v~v~D~~t------------g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~   90 (355)
T d2bbkh_          25 AAVTQQFVIDGEA------------GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP   90 (355)
T ss_dssp             CSSEEEEEEETTT------------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCcCeEEEEECCC------------CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE
Confidence            3456799999887            2344455545444  68888  7777754          4478999999999998


Q ss_pred             eeEeccCC------CCCeEEEEEeCCCCCCCCceEEEee--CCCeEEEEECCCcceeeeeeeccc-------cEEEEEEe
Q 019326           75 LGAIHHHE------SSSVTSLAFYTPQNLSVPRNLFSTS--ADGFVSIFDADPFVLLTSVKVHKK-------GVNDLAVH  139 (343)
Q Consensus        75 ~~~~~~~~------~~~v~~l~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~  139 (343)
                      +..+..+.      ......++|++++     ++++.+.  .+..+.+|+..+++.+..+..+..       ....+.++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          91 TADIELPDAPRFLVGTYPWMTSLTPDG-----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             EEEEEETTCCCCCBSCCGGGEEECTTS-----SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             EEEEecCCcceeecCCCCceEEEecCC-----CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            88775431      1233568999999     6666554  467899999999988887765432       22234455


Q ss_pred             cCCCEEEEEe-CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE--ec-CC---
Q 019326          140 HSGKLALTVG-RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE--LD-GK---  211 (343)
Q Consensus       140 ~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~--~~-~~---  211 (343)
                      +++..++... .++.+.+++......    .....+....+.+++..++.+ .++.+.+|++..++....  .. +.   
T Consensus       166 ~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             CCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence            5554443322 233344444333221    111234446677788887777 889999999987654321  11 10   


Q ss_pred             -------cceEEeeec-CCCeEEEEeCC----------CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCC
Q 019326          212 -------KRILCAAPG-ENGVLFTGGED----------RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAEN  273 (343)
Q Consensus       212 -------~~i~~~~~~-~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  273 (343)
                             .....+.++ ++..++....+          ..|.+||..+++.+..+.  +...+.+++|+|+++..     
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~-----  314 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPL-----  314 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCE-----
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeE-----
Confidence                   112234444 34444443322          469999999999998887  55678999999987521     


Q ss_pred             CeEEEEEcCCCcEEEEeccCcc
Q 019326          274 PYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       274 ~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                        ++++++.|+.|++||+++++
T Consensus       315 --l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         315 --LYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             --EEEEETTTTEEEEEETTTCC
T ss_pred             --EEEEECCCCEEEEEECCCCC
Confidence              46778889999999999885

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=1.3e-16  Score=132.32  Aligned_cols=261  Identities=13%  Similarity=0.081  Sum_probs=173.6

Q ss_pred             CceEEEe-----eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe----------eCCCeEEEEE
Q 019326           52 GTAAASG-----GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST----------SADGFVSIFD  116 (343)
Q Consensus        52 ~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~----------~~dg~i~iwd  116 (343)
                      +..+++.     ..++.|.+||..+++.+..+..+ ..  ..++|+|++     ++|++.          ..|+.|++||
T Consensus        13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~--~~~a~SpDg-----~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_          13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FL--PNPVVADDG-----SFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SS--CEEEECTTS-----SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CC--CceEEcCCC-----CEEEEEeCCCccccccCCCCEEEEEE
Confidence            5555543     34567999999999999988766 33  379999999     667654          3478999999


Q ss_pred             CCCcceeeeeeeccc-------cEEEEEEecCCCEEEEEe--CCCeEEEEEccCCceeEEEEcCCc--------ceEEEE
Q 019326          117 ADPFVLLTSVKVHKK-------GVNDLAVHHSGKLALTVG--RDDCLAMVNLVRGRRSFYHKIGKE--------ASLIKF  179 (343)
Q Consensus       117 ~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~  179 (343)
                      ..+++.+..+..+..       ....++|+|++++++.+.  .+..+.+|+..+++.+.....+..        ...+.+
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            999998888765432       235688999999887765  467899999999987766554432        334566


Q ss_pred             eCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEE--eccccc-
Q 019326          180 DGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYC--IEDAHS-  253 (343)
Q Consensus       180 ~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~h~-  253 (343)
                      ++++..++..  .++.+.+++.......    +...+....+. ++..++.++.++.+++|++..++....  .. .+. 
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~  239 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE-ALTE  239 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCT----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE-SSCH
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccce----ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccC-Cccc
Confidence            7777766655  4445555554433221    22223333444 567888889999999999987754221  11 121 


Q ss_pred             ---------ccEEEEEEEecCCCCCCCCCCeEEEEEcCC----------CcEEEEeccCccccCCCcccccccccceeEE
Q 019326          254 ---------ARVKGIVVLTKNDGGSTAENPYLVASASSD----------GVICVWDVRMAIKEKPLPLAEAKTNSRLTCL  314 (343)
Q Consensus       254 ---------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~  314 (343)
                               .....+++++++.         .++....+          ..|.+||..+++.     +........+.++
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~---------~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-----~~~~~~~~~~~~~  305 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALD---------RIYLLVDQRDEWRHKTASRFVVVLDAKTGER-----LAKFEMGHEIDSI  305 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTT---------EEEEEEEECCTTCTTSCEEEEEEEETTTCCE-----EEEEEEEEEECEE
T ss_pred             ceEeeeeeccceEEEEEeCCCC---------eEEEEeccCCceeecCCCCeEEEEeCCCCcE-----EEEecCCCCEEEE
Confidence                     1223466666665         55554433          3699999998742     3334445668999


Q ss_pred             EcCCCCc--eeccccCCCCCCCccccC
Q 019326          315 AGSSTKS--FKRPQIGDSAPKGEEKAS  339 (343)
Q Consensus       315 ~~s~~~~--~~~~~~~~~~~~~~~~~~  339 (343)
                      +++||++  +.+.+..++.+..++.+.
T Consensus       306 a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         306 NVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            9999987  445666677666665443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.67  E-value=1.9e-16  Score=131.87  Aligned_cols=304  Identities=9%  Similarity=0.043  Sum_probs=195.3

Q ss_pred             eEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEe-------------------------cCCCCCeEEEEe--cCceE
Q 019326            3 LIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSY-------------------------PAHLSPITTVAV--SGTAA   55 (343)
Q Consensus         3 l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~h~~~v~~l~~--~~~~l   55 (343)
                      +++|+.+|.|++|++.+       ++.+...+++..                         ..|.........  +|++|
T Consensus        14 f~Sgg~sG~V~V~dlpS-------~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS-------MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             EEECBTTCCEEEEEETT-------TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCC-------CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            67899999999999976       333333222211                         113333333333  37777


Q ss_pred             EEe-eCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC-----------------eEEEEEC
Q 019326           56 ASG-GTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG-----------------FVSIFDA  117 (343)
Q Consensus        56 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----------------~i~iwd~  117 (343)
                      ++. ..+++|.++|+++++....+.-.....+..++|+|+++.   .+++..+.+.                 .+..+|.
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t---~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT---NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC---CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE---EEEEeccCCcccccCcccccccccccceEEeecC
Confidence            554 578899999999999888765432678999999999831   1444433332                 2355888


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeCC-CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEEeCCcEEE
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD-DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMVTEEKVGI  196 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  196 (343)
                      .+++...++... +....++|+|+|+++++.+.+ ..+..++..+.+.............+.+.|+|+++..+.++.+.+
T Consensus       164 ~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vv  242 (441)
T d1qnia2         164 ETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV  242 (441)
T ss_dssp             TTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred             ccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEE
Confidence            888877777644 456889999999999888765 334444544444433333333334455678888877667778888


Q ss_pred             EEcccceeEEEecCCcceEEeeec-CCCeE-EEEeCCCcEEEEECCCCcee--------EEec--ccccccEEEEEEEec
Q 019326          197 HQAEDAKLLCELDGKKRILCAAPG-ENGVL-FTGGEDRSITAWDTNSGKVA--------YCIE--DAHSARVKGIVVLTK  264 (343)
Q Consensus       197 ~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~--------~~~~--~~h~~~v~~~~~~~~  264 (343)
                      ++....+.+..++-......+.++ +++++ +++..+++|.+||+.+....        ..+.  ..........+|.+.
T Consensus       243 d~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~  322 (441)
T d1qnia2         243 DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR  322 (441)
T ss_dssp             ECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred             EcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC
Confidence            877777888888755556677777 45655 56778999999998653211        0000  011222344566665


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccCcc----ccCCCccc-------ccccccceeEEEcCCCCceeccc
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRMAI----KEKPLPLA-------EAKTNSRLTCLAGSSTKSFKRPQ  326 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~-------~~~~~~~i~~~~~s~~~~~~~~~  326 (343)
                      +.         .+.+...|..|..|++....    .....++.       ...+...+.+.+++|||+|++++
T Consensus       323 g~---------~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         323 GN---------AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             SE---------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred             ce---------EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence            54         88888999999999986331    01111111       12344457778899999999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=3.4e-14  Score=118.25  Aligned_cols=246  Identities=9%  Similarity=-0.017  Sum_probs=154.2

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEe----------eCCCeEEEEEcCCCeeeeEeccCC------CCCeEEEEEeCC
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASG----------GTDDTIHLYDLSTSSSLGAIHHHE------SSSVTSLAFYTP   94 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~l~~~~~   94 (343)
                      +.+....++..+  .++|+  |..|++.          ..|+.|++||..+++.+..+..+.      ......++|+|+
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence            334444455554  36676  7777764          347889999999999888775431      122346899999


Q ss_pred             CCCCCCceEEEee-CCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc---
Q 019326           95 QNLSVPRNLFSTS-ADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI---  170 (343)
Q Consensus        95 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---  170 (343)
                      +     ++|+++. .++.+.+||+.+++....+..+.....   +......++..+.||.+.++++...........   
T Consensus       135 G-----k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         135 S-----ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             S-----SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             C-----CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            9     6776665 579999999999998888776544321   112234666777788888888765543322211   


Q ss_pred             ----CCcceEEEEeCCCCEEEEEeCCcEEEEEcccceeEEEecC-------------CcceEEeeec-CCCeEEEEe-CC
Q 019326          171 ----GKEASLIKFDGSGEKFFMVTEEKVGIHQAEDAKLLCELDG-------------KKRILCAAPG-ENGVLFTGG-ED  231 (343)
Q Consensus       171 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~~~i~~~~~~-~~~~l~~~~-~d  231 (343)
                          ...+....+.+++..+.. ..+.+.+++............             ......++++ +++.++... .+
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccceeecccccCcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence                122334555555543332 455566666655443322210             0111123343 334443332 11


Q ss_pred             --------CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccC
Q 019326          232 --------RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK  298 (343)
Q Consensus       232 --------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  298 (343)
                              ..|.+||..+++.+..+.  +...+.+++|+|+++..       +++++..|+.|++||..+++...
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~-------ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASD-------NYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCE-------EEEEETTTTEEEEEESSSCEEEE
T ss_pred             CceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEE-------EEEEeCCCCeEEEEECCCCCEEE
Confidence                    358999999999988887  56788999999987521       45778889999999999986443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=6.6e-13  Score=114.10  Aligned_cols=129  Identities=9%  Similarity=-0.007  Sum_probs=96.1

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeC---------CCeEEEEEcCCCeeee
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGT---------DDTIHLYDLSTSSSLG   76 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~---------dg~i~iwd~~~~~~~~   76 (343)
                      .++.|.+||+.+       ++......-..+..|...|.++.|+  +++|+.++.         ++.+.+||+.+++. .
T Consensus        34 ~~~~~~~~~~~t-------~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~  105 (470)
T d2bgra1          34 QENNILVFNAEY-------GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-I  105 (470)
T ss_dssp             SSSCEEEEETTT-------CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-C
T ss_pred             cCCcEEEEECCC-------CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-c
Confidence            578899999988       4333333334556778899999999  888887743         57789999998874 4


Q ss_pred             EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeec------------------cccEEEEEE
Q 019326           77 AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVH------------------KKGVNDLAV  138 (343)
Q Consensus        77 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~  138 (343)
                      .+..+ ...+....|+|++     +.++.. .++.+++|+..+++..+....+                  .+....+.|
T Consensus       106 ~l~~~-~~~~~~~~~SPDG-----~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         106 TEERI-PNNTQWVTWSPVG-----HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             CSSCC-CTTEEEEEECSST-----TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             ccccC-CccccccccccCc-----ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            56667 7889999999999     677774 5678999999887765443221                  123456789


Q ss_pred             ecCCCEEEEEeCC
Q 019326          139 HHSGKLALTVGRD  151 (343)
Q Consensus       139 ~~~~~~l~~~~~d  151 (343)
                      +|||++|+....|
T Consensus       179 SPDGk~ia~~~~d  191 (470)
T d2bgra1         179 SPNGTFLAYAQFN  191 (470)
T ss_dssp             CTTSSEEEEEEEE
T ss_pred             CCCCCccceeEec
Confidence            9999999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=5e-13  Score=111.09  Aligned_cols=256  Identities=11%  Similarity=0.035  Sum_probs=157.0

Q ss_pred             eeCCC--eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee----------CCCeEEEEECCCcceeee
Q 019326           58 GGTDD--TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS----------ADGFVSIFDADPFVLLTS  125 (343)
Q Consensus        58 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~  125 (343)
                      ...++  .|.+||..+++.+..+..+ ...  .++|+|++     +.|++.+          .|+.|.+||..+++++..
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~-~~~--~~a~spDg-----~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~  111 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGA-FLS--LAVAGHSG-----SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEEC-TTC--EEEECTTS-----SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCC-CCC--cceECCCC-----CEEEEEcccCccccccccCCeEEEEECCCCcEeee
Confidence            34444  4667799999999988877 443  58999999     6777654          477899999999999888


Q ss_pred             eeeccc-------cEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEE
Q 019326          126 VKVHKK-------GVNDLAVHHSGKLALTVG-RDDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGI  196 (343)
Q Consensus       126 ~~~~~~-------~v~~i~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~  196 (343)
                      +..+..       ....++|+|||++++++. .++.+.+||+.+++.......+.......  .....++.. .|+.+.+
T Consensus       112 i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP--GAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE--EETTEEECCCCTTSCEE
T ss_pred             ecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc--CCCceEEEEcCCCCEEE
Confidence            875432       234689999999888776 57999999999998877776654332111  112223333 6677777


Q ss_pred             EEcccceeEEEec-------CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEec-ccc----------cccEEE
Q 019326          197 HQAEDAKLLCELD-------GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE-DAH----------SARVKG  258 (343)
Q Consensus       197 ~d~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~h----------~~~v~~  258 (343)
                      ++...........       +...+....+......+ ....+.+++++...+....... ..+          ......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  268 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV-WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE-ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             EEecCCceeeeeeecccccccccceeecccccCcEEE-EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCcee
Confidence            7665443322221       22223334444333322 2335567777766554332211 011          112234


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcCC---------CcEEEEeccCccccCCCcccccccccceeEEEcCCCCc-e-ecccc
Q 019326          259 IVVLTKNDGGSTAENPYLVASASSD---------GVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSSTKS-F-KRPQI  327 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~-~~~~~  327 (343)
                      +++++++.         .++....+         ..|.+||..+++..     ........+..+++++|++ + .+...
T Consensus       269 ~a~~~~~~---------~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         269 VAKLKNTD---------GIMILTVEHSRSCLAAAENTSSVTASVGQTS-----GPISNGHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             EEEETTTT---------EEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----ECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred             EEEcCCCC---------EEEEEecCCCceeecCCceEEEEECCCCcEe-----EEecCCCceeEEEECCCCCEEEEEEeC
Confidence            66777665         44433211         35889999987533     3334455688999999986 3 45566


Q ss_pred             CCCCCCCcccc
Q 019326          328 GDSAPKGEEKA  338 (343)
Q Consensus       328 ~~~~~~~~~~~  338 (343)
                      .++.+..++..
T Consensus       335 ~~~~v~v~D~~  345 (368)
T d1mdah_         335 GTEVLDIYDAA  345 (368)
T ss_dssp             TTTEEEEEESS
T ss_pred             CCCeEEEEECC
Confidence            67766666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=1.7e-13  Score=114.01  Aligned_cols=222  Identities=10%  Similarity=0.019  Sum_probs=155.5

Q ss_pred             EEEeeCCCeEEEEEcCCCeeeeEecc------------------------------CCCCCeEEEEEeCCCCCCCCceEE
Q 019326           55 AASGGTDDTIHLYDLSTSSSLGAIHH------------------------------HESSSVTSLAFYTPQNLSVPRNLF  104 (343)
Q Consensus        55 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~v~~l~~~~~~~~~~~~~l~  104 (343)
                      +++++.+|.|++|++.+++.+..+.-                              | ........+.|+|     ++|+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~h-hP~~s~t~gtpDG-----r~lf   87 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCH-HPHISMTDGRYDG-----KYLF   87 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBC-CCEEEEETTEEEE-----EEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCccc-CCCcceecccCCC-----CEEE
Confidence            67889999999999999988777632                              1 1234445567888     6775


Q ss_pred             Ee-eCCCeEEEEECCCcceeeeeee-ccccEEEEEEecCCC--EEEEEeCCC-----------------eEEEEEccCCc
Q 019326          105 ST-SADGFVSIFDADPFVLLTSVKV-HKKGVNDLAVHHSGK--LALTVGRDD-----------------CLAMVNLVRGR  163 (343)
Q Consensus       105 s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~--~l~~~~~d~-----------------~i~~wd~~~~~  163 (343)
                      +. ..++.|.++|+++++....+.- +...+..++|+|+++  +++..+.+.                 .+..+|..+.+
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence            55 4688999999999998887763 456889999999997  444444332                 23568888888


Q ss_pred             eeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECC
Q 019326          164 RSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~  240 (343)
                      .......+..+..+.++|+|+++++.  ....+..++..+.+....+........+.+. +++++.. +.++.+.+++..
T Consensus       168 v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~  246 (441)
T d1qnia2         168 VAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRG  246 (441)
T ss_dssp             EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSS
T ss_pred             eeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEccc
Confidence            88888888889999999999998887  3334444454444433332211111111222 4555544 446788888877


Q ss_pred             CCceeEEecccccccEEEEEEEecCCCCCCCCCCeEE-EEEcCCCcEEEEeccCc
Q 019326          241 SGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLV-ASASSDGVICVWDVRMA  294 (343)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~  294 (343)
                      ..+.+..++ .. .....+.++|++.         ++ +++..|++|.|||+.+.
T Consensus       247 ~~~v~~~IP-vg-ksPhGv~vSPDGk---------yl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         247 ESEFTRYIP-VP-KNPHGLNTSPDGK---------YFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             SCSSEEEEC-CB-SSCCCEEECTTSC---------EEEEECTTSSBEEEEEGGGH
T ss_pred             CCceEEEEe-CC-CCccCceECCCCC---------EEEEeCCcCCcEEEEEeehh
Confidence            777888887 44 3457899999987         55 56788999999999864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.30  E-value=3.1e-08  Score=79.75  Aligned_cols=227  Identities=10%  Similarity=0.012  Sum_probs=146.1

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeC--
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA--  108 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~--  108 (343)
                      .+...+......+..++|+  |++.++-...+.|..|+.++++....+... ......+++.+++     +++++...  
T Consensus        30 ~p~~~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-~~~p~gla~~~dG-----~l~va~~~~~  103 (319)
T d2dg1a1          30 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDG-----RLFVCYLGDF  103 (319)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTS-----CEEEEECTTS
T ss_pred             CCcEEeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCC-CCCeeEEEECCCC-----CEEEEecCCC
Confidence            3333433344556789998  777777778899999998877666555555 5678999999998     56665432  


Q ss_pred             --CCeEEEEECCCcceeeeeee--ccccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCceeEEEEcCCcceEEE
Q 019326          109 --DGFVSIFDADPFVLLTSVKV--HKKGVNDLAVHHSGKLALTVGR------DDCLAMVNLVRGRRSFYHKIGKEASLIK  178 (343)
Q Consensus       109 --dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~  178 (343)
                        .+.+...+..+.........  -......+++.++|++.++...      .+.+..++...+........-...+.++
T Consensus       104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         104 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA  183 (319)
T ss_dssp             SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeee
Confidence              23455555555443333321  1235788999999987666432      2335555544433332233334567899


Q ss_pred             EeCCCCEEEEE--eCCcEEEEEcccc-eeEE--------EecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE
Q 019326          179 FDGSGEKFFMV--TEEKVGIHQAEDA-KLLC--------ELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY  246 (343)
Q Consensus       179 ~~~~~~~~~~~--~~~~i~~~d~~~~-~~~~--------~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  246 (343)
                      |+|+++.++.+  ..+.|..|++... ....        ..........+++. ++++.++....+.|.+||. .|+.+.
T Consensus       184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             eccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence            99999988777  6788999987532 1111        11122335678886 5666677778899999996 588888


Q ss_pred             Eecc-----cccccEEEEEEEecCC
Q 019326          247 CIED-----AHSARVKGIVVLTKND  266 (343)
Q Consensus       247 ~~~~-----~h~~~v~~~~~~~~~~  266 (343)
                      ++..     ++...++++++.+...
T Consensus       263 ~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         263 QILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             EEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             EEeCCCcCCCcCceeeeEEEeCCCC
Confidence            7752     2334578888877655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=2.2e-10  Score=98.11  Aligned_cols=143  Identities=8%  Similarity=-0.011  Sum_probs=105.3

Q ss_pred             EEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCC----CCCeEEEEEeCCCCCCCCceEEEeeC---------CCe
Q 019326           47 TVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHE----SSSVTSLAFYTPQNLSVPRNLFSTSA---------DGF  111 (343)
Q Consensus        47 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~~~~~l~s~~~---------dg~  111 (343)
                      .+.|.  +++++  ..|+.+.+||+.+++....+..+.    ...|.++.|+|++     ++|+.++.         ++.
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-----~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-----QFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-----SEEEEEEEEEECSSSCEEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-----CEEEEEECCcceeeeccCce
Confidence            35666  44444  347889999999998766554331    4679999999999     78887743         568


Q ss_pred             EEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEc-------------------CC
Q 019326          112 VSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKI-------------------GK  172 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------------------~~  172 (343)
                      +.+||+.+++ +..+..+...+....|+|||+.++.. .++.+.+|+..+++.......                   ..
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            8999999876 45677788899999999999999986 467899999988875433221                   12


Q ss_pred             cceEEEEeCCCCEEEEE-e-CCcEEEEE
Q 019326          173 EASLIKFDGSGEKFFMV-T-EEKVGIHQ  198 (343)
Q Consensus       173 ~~~~~~~~~~~~~~~~~-~-~~~i~~~d  198 (343)
                      ....+.|+|+|+.++.. . +..+..+.
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             CccccEECCCCCccceeEecCCcCceEE
Confidence            24568899999999998 3 34344443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.29  E-value=2.1e-09  Score=86.19  Aligned_cols=236  Identities=11%  Similarity=-0.049  Sum_probs=159.1

Q ss_pred             CeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC
Q 019326           72 SSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD  151 (343)
Q Consensus        72 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d  151 (343)
                      .+.+..+...  ..+..+++.|++     +++++...+++|..|+... + ...+......+.+++|.++|+++++...+
T Consensus        18 ~~v~~~~p~~--~~~e~iAv~pdG-----~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          18 AKIITSFPVN--TFLENLASAPDG-----TIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             EEEEEEECTT--CCEEEEEECTTS-----CEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECT
T ss_pred             ccEEEECCCC--CCcCCEEECCCC-----CEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCC
Confidence            3445555543  468899999999     7888888899998888654 3 33445566789999999999999998888


Q ss_pred             CeEEEEEccCCc--eeEEEE--cCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-----------CCcceE
Q 019326          152 DCLAMVNLVRGR--RSFYHK--IGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-----------GKKRIL  215 (343)
Q Consensus       152 ~~i~~wd~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-----------~~~~i~  215 (343)
                      +.+..++.....  ......  .......+.+.++++++++. .++.+..++...+.......           ......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             ceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence            888888876543  222222  23457789999999887777 77888888887765433222           123355


Q ss_pred             EeeecCCCeEEEEeCCCcEEEEECCCCceeEEec-ccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          216 CAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIE-DAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       216 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      .+.+..+.++++.+..+.|..++........... ........++++.+++.         ++++...++.|..++....
T Consensus       169 gi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~---------l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         169 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN---------LYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC---------EEEECBTTCCEEEECTTCC
T ss_pred             cccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC---------EEEEEcCCCcEEEECCCCC
Confidence            6666666677777888999999887543221111 02334456788888876         8888888899999877643


Q ss_pred             cccCCCcccccc-cccceeEEEc---CCCCceeccccCC
Q 019326          295 IKEKPLPLAEAK-TNSRLTCLAG---SSTKSFKRPQIGD  329 (343)
Q Consensus       295 ~~~~~~~~~~~~-~~~~i~~~~~---s~~~~~~~~~~~~  329 (343)
                      .    ..+.... .-...++++|   ++|++.+......
T Consensus       240 ~----~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 T----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             E----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             E----EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            1    1111111 2234788999   6677766554433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=3.7e-08  Score=79.07  Aligned_cols=236  Identities=10%  Similarity=0.047  Sum_probs=150.4

Q ss_pred             CeEEEEec--CceEEEeeC-------CCeEEEEEcCCCeeeeEeccC---CCCCeEEEEEeCCCCCCCCceEEEeeCCCe
Q 019326           44 PITTVAVS--GTAAASGGT-------DDTIHLYDLSTSSSLGAIHHH---ESSSVTSLAFYTPQNLSVPRNLFSTSADGF  111 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~  111 (343)
                      ....++|+  |++.++...       +|+|..||..+++........   ....-..++|.+++     +.++++...+.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-----~~l~vad~~~~   93 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-----NQLFVADMRLG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-----SEEEEEETTTE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-----CEEEEEECCCe
Confidence            45667887  665554322       467899998877654333221   02346789999998     67777777778


Q ss_pred             EEEEECCCcceeeeeeecc----ccEEEEEEecCCCEEEEEeC---------------CCeEEEEEccCCceeEEEEcCC
Q 019326          112 VSIFDADPFVLLTSVKVHK----KGVNDLAVHHSGKLALTVGR---------------DDCLAMVNLVRGRRSFYHKIGK  172 (343)
Q Consensus       112 i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~~~l~~~~~---------------d~~i~~wd~~~~~~~~~~~~~~  172 (343)
                      |..++.+............    ...+.+++.++|++.++-..               .|.|..++. .++.......-.
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~  172 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQ  172 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEES
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcc
Confidence            8888987643222111111    13578999999988776432               234444443 233333333334


Q ss_pred             cceEEEEeCCCC----EEEEE--eCCcEEEEEcccceeEE------Eec--CCcceEEeeec-CCCeEEEEeCCCcEEEE
Q 019326          173 EASLIKFDGSGE----KFFMV--TEEKVGIHQAEDAKLLC------ELD--GKKRILCAAPG-ENGVLFTGGEDRSITAW  237 (343)
Q Consensus       173 ~~~~~~~~~~~~----~~~~~--~~~~i~~~d~~~~~~~~------~~~--~~~~i~~~~~~-~~~~l~~~~~dg~i~i~  237 (343)
                      ..+.++|+|++.    .++++  ..+.|..|++.....+.      .+.  .......+++. ++++.++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            457789988765    45555  67788888876432221      222  22335677886 55666666678999999


Q ss_pred             ECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       238 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      |...++....+. .....+++++|.++++        .++++.+.+|+|...++...
T Consensus       253 dp~~g~~~~~i~-~p~~~~t~~afg~d~~--------~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         253 GPDGGQPKMRIR-CPFEKPSNLHFKPQTK--------TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CTTCBSCSEEEE-CSSSCEEEEEECTTSS--------EEEEEETTTTEEEEEECSSC
T ss_pred             eCCCCEEEEEEE-CCCCCEEEEEEeCCCC--------EEEEEECCCCcEEEEECCCC
Confidence            999888777776 5567789999987654        16677788888887777643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=7e-09  Score=81.09  Aligned_cols=234  Identities=10%  Similarity=0.025  Sum_probs=147.4

Q ss_pred             CCeEEEEec--CceEEE-eeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC
Q 019326           43 SPITTVAVS--GTAAAS-GGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP  119 (343)
Q Consensus        43 ~~v~~l~~~--~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  119 (343)
                      ..-..|+++  |+..++ .+..+.+..++............. ......+++.+++     +++++....+.+++++..+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g-----~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAG-----TVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTC-----CEEEEETTTEEEEECTTCS
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCC-----CEEEeeeeeceeeeeeecc
Confidence            445788998  665444 455677777766544322222222 2456788999988     6666666666666665555


Q ss_pred             cceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEE-EcCCcceEEEEeCCCCEEEEE-eCCcEEEE
Q 019326          120 FVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYH-KIGKEASLIKFDGSGEKFFMV-TEEKVGIH  197 (343)
Q Consensus       120 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~  197 (343)
                      ...+.... .......+++.++++++++-..+..+..++.......... .....+..++++++++.+++. .++.+..+
T Consensus        88 ~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          88 NQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             ceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence            44443333 2345789999999988887777777877776554322211 122456789999999977776 78889999


Q ss_pred             EcccceeEEEe-cCCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCe
Q 019326          198 QAEDAKLLCEL-DGKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPY  275 (343)
Q Consensus       198 d~~~~~~~~~~-~~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  275 (343)
                      +.......... ..-.....+++.+ ++++++....+.|..++..... ...+....-....+|++.+++.         
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~---------  236 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRT---------  236 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCC---------
T ss_pred             ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCC---------
Confidence            87755433322 3445567888874 4566666667888888876443 3333313335678999988776         


Q ss_pred             EEEEEcCCCcEEEEeccC
Q 019326          276 LVASASSDGVICVWDVRM  293 (343)
Q Consensus       276 ~l~s~~~dg~i~vwd~~~  293 (343)
                      ++++-..+++|+.++...
T Consensus       237 l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         237 VYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EEEEEGGGTEEEEECCCG
T ss_pred             EEEEECCCCEEEEEeCCC
Confidence            777767777676655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=2.3e-09  Score=83.93  Aligned_cols=231  Identities=10%  Similarity=0.005  Sum_probs=145.4

Q ss_pred             CCeEEEEEeCCCCCCCCceEEE-eeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFS-TSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRG  162 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~  162 (343)
                      .....+++.+++     +.+++ .+..+.+..++............-......++++++++.+++....+.+++++-.+.
T Consensus        14 ~~P~~vavd~dG-----~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAG-----NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTC-----CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCC-----CEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            456899999998     55554 445677777766543222221111234577899999988877777777776665555


Q ss_pred             ceeEEEEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEE-ecCCcceEEeeec-CCCeEEEEeCCCcEEEEEC
Q 019326          163 RRSFYHKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCE-LDGKKRILCAAPG-ENGVLFTGGEDRSITAWDT  239 (343)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~-~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~  239 (343)
                      ...........+..++++++++++++- ....+..++......... .........+++. .++++++...++.|..+|.
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            444333333567889999999877766 666677776654332221 1223345667776 4566777777888999998


Q ss_pred             CCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCCC
Q 019326          240 NSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSST  319 (343)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  319 (343)
                      ...... .+.........+|++.+++.         ++++....+.|..++.....    ..+.....-.....|+++++
T Consensus       169 ~~~~~~-~~~~~~~~~p~gi~~d~~g~---------l~vsd~~~~~i~~~~~~~~~----~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         169 ESNNQV-VLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             TTCCEE-ECCCSSCCSEEEEEECTTCC---------EEEEETTTTEEEEECTTCSC----CEECCCCSCCCEEEEEECTT
T ss_pred             ccceee-eeeccccCCCccceeeeeee---------eeeeecCCCEEEEEeCCCCe----EEEEccCCCCCeEEEEEeCC
Confidence            754433 33324556678999988776         88888888888888776532    11111122235788999999


Q ss_pred             CceeccccCCCCCC
Q 019326          320 KSFKRPQIGDSAPK  333 (343)
Q Consensus       320 ~~~~~~~~~~~~~~  333 (343)
                      +.+.++.....++.
T Consensus       235 g~l~vad~~~~rI~  248 (260)
T d1rwia_         235 RTVYVADRGNDRVV  248 (260)
T ss_dssp             CCEEEEEGGGTEEE
T ss_pred             CCEEEEECCCCEEE
Confidence            88887766655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=8.2e-08  Score=78.79  Aligned_cols=270  Identities=10%  Similarity=0.090  Sum_probs=156.4

Q ss_pred             eeEEecc--CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCC-eeee
Q 019326            2 SLIAGSY--EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTS-SSLG   76 (343)
Q Consensus         2 ~l~~g~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~   76 (343)
                      .|++|++  .+.|+++.+...      ...++....... ....++..|+|+  ++.|++... +.+..|.+... ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~------~~~l~~~~~~~~-~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~   75 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDE------KLTCKLIKRTEI-PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVH   75 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETT------TTEEEEEEEEEC-CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCC------CCeEEEeeeeec-cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEE
Confidence            3788875  668988888762      112222222222 245556779998  777777654 56788877643 2222


Q ss_pred             Ee-ccCCCCCeEEEEEeCCCCCCCCce--EEEeeC-CCeEEEEECCC-c------------ceeeee----eeccccEEE
Q 019326           77 AI-HHHESSSVTSLAFYTPQNLSVPRN--LFSTSA-DGFVSIFDADP-F------------VLLTSV----KVHKKGVND  135 (343)
Q Consensus        77 ~~-~~~~~~~v~~l~~~~~~~~~~~~~--l~s~~~-dg~i~iwd~~~-~------------~~~~~~----~~~~~~v~~  135 (343)
                      .. ... ......+.+++++     +.  ++++.. .+.|..+.+.. +            +.-...    +.....+.+
T Consensus        76 ~~~~~~-~~~p~~v~~~~~~-----~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~  149 (365)
T d1jofa_          76 EASHPI-GGHPRANDADTNT-----RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG  149 (365)
T ss_dssp             EEEEEC-CSSGGGGCTTSCC-----EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred             EeeecC-CCCcEEEEECCCC-----CEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceE
Confidence            21 112 3445567778887     43  333322 35555554321 1            110001    011234789


Q ss_pred             EEEecCCCEEEEEeC-CCeEEEEEccCCceeE-EE--E---cCCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEE
Q 019326          136 LAVHHSGKLALTVGR-DDCLAMVNLVRGRRSF-YH--K---IGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLC  206 (343)
Q Consensus       136 i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~-~~--~---~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~  206 (343)
                      +.|+|+|++++++.. ...|.+|+......+. ..  .   ....+..+.|+|+++++++.  .++.|.+|+....+...
T Consensus       150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence            999999998888765 4578888765433222 11  1   13567889999999998777  68899999987654221


Q ss_pred             --E---ec---------------CCcceEEeeec-CCCeEEEEeC------CCcEEEEECCCCceeEEec-----ccccc
Q 019326          207 --E---LD---------------GKKRILCAAPG-ENGVLFTGGE------DRSITAWDTNSGKVAYCIE-----DAHSA  254 (343)
Q Consensus       207 --~---~~---------------~~~~i~~~~~~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~-----~~h~~  254 (343)
                        .   ..               .......+.++ ++++|+++..      .+.|..|++.....+....     .....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~  309 (365)
T d1jofa_         230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG  309 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred             EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCC
Confidence              1   11               11234566777 4667766532      2337778776543222211     02334


Q ss_pred             cEEEEEEEe-cCCCCCCCCCCeEEEEE-cCCCcEEEEeccCc
Q 019326          255 RVKGIVVLT-KNDGGSTAENPYLVASA-SSDGVICVWDVRMA  294 (343)
Q Consensus       255 ~v~~~~~~~-~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~  294 (343)
                      ...+++++| +++         +|+.+ ..++.|.+|+++..
T Consensus       310 ~p~~i~~~p~~G~---------~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         310 HSNAVSPCPWSDE---------WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TCCCEEECTTCTT---------EEEEECSSSCEEEEEEEETT
T ss_pred             CccEEEecCCCCC---------EEEEEeCCCCeEEEEEEeCC
Confidence            567788887 444         66555 57799999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.6e-07  Score=73.33  Aligned_cols=231  Identities=11%  Similarity=0.025  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---eEEEEECCCcceeeeeeeccccEEEEEEe
Q 019326           63 TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---FVSIFDADPFVLLTSVKVHKKGVNDLAVH  139 (343)
Q Consensus        63 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~  139 (343)
                      .|.+-|.+..... .+... ...+..-+|+|+|     +.|+......   .+.+.+...+.. ..+..+........|+
T Consensus        20 ~l~i~d~dG~~~~-~l~~~-~~~~~sP~wSPDG-----k~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRS-PQPLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEE-SSCEEEEEECTTS-----SEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEEC
T ss_pred             EEEEEcCCCCCcE-EEecC-CCceeeeEECCCC-----CEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceec
Confidence            5777787644444 44334 4778899999999     6777554432   466667666543 3444567788899999


Q ss_pred             cCCCEEEEEeC-CCeE--EEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCC--cEEEEEcccceeEEEecCCc
Q 019326          140 HSGKLALTVGR-DDCL--AMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEE--KVGIHQAEDAKLLCELDGKK  212 (343)
Q Consensus       140 ~~~~~l~~~~~-d~~i--~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~  212 (343)
                      |+++.++.... ++..  ..+.....................+++++..++..  .++  .+...++.............
T Consensus        92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  171 (269)
T d2hqsa1          92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS  171 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred             CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccc
Confidence            99988877654 3333  33333333332233333444456677777766655  333  45666666665544444556


Q ss_pred             ceEEeeec-CCCeEEEE-eCCCcEEE--EECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcC---CCc
Q 019326          213 RILCAAPG-ENGVLFTG-GEDRSITA--WDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASS---DGV  285 (343)
Q Consensus       213 ~i~~~~~~-~~~~l~~~-~~dg~i~i--~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~  285 (343)
                      ......++ ++..++.. ...+...+  .+...+.  ..+. .+........|+|+++         .|+-.+.   ...
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-~~~~~~~~p~~SPDG~---------~i~f~s~~~~~~~  239 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVL-SSTFLDETPSLAPNGT---------MVIYSSSQGMGSV  239 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEEC-CCSSSCEEEEECTTSS---------EEEEEEEETTEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeeccccc--ceEe-ecCccccceEECCCCC---------EEEEEEcCCCCcE
Confidence            66666777 45555544 44444444  4544443  2333 3555667778988887         7764443   346


Q ss_pred             EEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          286 ICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       286 i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      |.++++......   .+.  ...+.+...+|||
T Consensus       240 l~~~~~dg~~~~---~lt--~~~g~~~~p~WSP  267 (269)
T d2hqsa1         240 LNLVSTDGRFKA---RLP--ATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEETTSCCEE---ECC--CSSSEEEEEEECC
T ss_pred             EEEEECCCCCEE---EEe--CCCCcEEeEEeCC
Confidence            888999875322   111  2234567778887

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=3.5e-07  Score=71.98  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=155.3

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccC-----CCCCeEEEEEeCCCCCCCCceEEE-eeCCCeEEEE
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHH-----ESSSVTSLAFYTPQNLSVPRNLFS-TSADGFVSIF  115 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iw  115 (343)
                      ....|+++  ++.+++-...+.|++||.+ ++.+..+...     .......+++.++..    ..+++ .+.++.|..+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG----DIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT----EEEEEECGGGCEEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccccc----ccceeccCCccccccc
Confidence            46788987  6777766677889999966 6666666321     012345566665541    34443 3445677777


Q ss_pred             ECCCcceeeeee-eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEE-e
Q 019326          116 DADPFVLLTSVK-VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMV-T  190 (343)
Q Consensus       116 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~  190 (343)
                      +.. ++....+. ........+++.+++.++++....+.+.+++.. ++.+......   .....+++.++++.+++. .
T Consensus        99 ~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~  176 (279)
T d1q7fa_          99 NQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  176 (279)
T ss_dssp             CTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             ccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc
Confidence            764 45555543 233467889999999988888888888888854 4444443322   446778899998877777 7


Q ss_pred             CCcEEEEEcccceeEEEecC---CcceEEeeecC-CCeEEEEeC-CCcEEEEECCCCceeEEecc-cccccEEEEEEEec
Q 019326          191 EEKVGIHQAEDAKLLCELDG---KKRILCAAPGE-NGVLFTGGE-DRSITAWDTNSGKVAYCIED-AHSARVKGIVVLTK  264 (343)
Q Consensus       191 ~~~i~~~d~~~~~~~~~~~~---~~~i~~~~~~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~~~  264 (343)
                      .+.|.+|+.. ++.+.++..   ......+++.+ ++++++-.. ++.|.+|+. +|+.+..+.. ........|++.++
T Consensus       177 ~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         177 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            8899999864 566666653   33467888874 455555433 457999985 5887777651 22346789999888


Q ss_pred             CCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          265 NDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       265 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      +.          |+.++.+.+|++|.....
T Consensus       255 G~----------l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         255 GS----------VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TE----------EEEEETTTEEEEEECSCC
T ss_pred             Cc----------EEEEeCCCeEEEEEeeee
Confidence            73          555567899999999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=2.1e-07  Score=73.26  Aligned_cols=191  Identities=15%  Similarity=0.152  Sum_probs=133.1

Q ss_pred             eEEEEec---CceEEE-eeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCc
Q 019326           45 ITTVAVS---GTAAAS-GGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPF  120 (343)
Q Consensus        45 v~~l~~~---~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  120 (343)
                      -..+++.   +..+++ .+.++.|..++.. ++....+..........+++.+++     .++++....+.+.+++... 
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G-----~i~v~~~~~~~~~~~~~~g-  144 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKG-----RIIVVECKVMRVIIFDQNG-  144 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTS-----CEEEEETTTTEEEEECTTS-
T ss_pred             cccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCC-----cEEEEeeccceeeEeccCC-
Confidence            3445543   444443 3445677777764 666666654325677899999888     6777777778888888654 


Q ss_pred             ceeeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC---CcceEEEEeCCCCEEEEE-e-CCc
Q 019326          121 VLLTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG---KEASLIKFDGSGEKFFMV-T-EEK  193 (343)
Q Consensus       121 ~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~-~~~  193 (343)
                      +.+..+.  .+......+++.++++.+++....+.|++||.. ++.+......   ..+..++++++++.+++- . +..
T Consensus       145 ~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~  223 (279)
T d1q7fa_         145 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN  223 (279)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             ceeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcE
Confidence            5555553  244577889999999988888889999999964 5555444332   346789999999977665 3 446


Q ss_pred             EEEEEcccceeEEEec---CCcceEEeeecCCCeEEEEeCCCcEEEEECCCCce
Q 019326          194 VGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKV  244 (343)
Q Consensus       194 i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  244 (343)
                      |.+|+ .+++.+..+.   .......+++.++..|++++.+..|++|...+..+
T Consensus       224 v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         224 LTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred             EEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeecC
Confidence            88888 4677776665   22356778887666677777899999999876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=1.8e-07  Score=74.53  Aligned_cols=219  Identities=10%  Similarity=-0.005  Sum_probs=142.6

Q ss_pred             EEeEEecCCCCCeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC
Q 019326           33 TQLFSYPAHLSPITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG  110 (343)
Q Consensus        33 ~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg  110 (343)
                      +.+..+.. ...+..+++.  |+++++...+++|..|+... + ...+... ...+.+++|.+++     +++++...++
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~-~~~~~gla~~~dG-----~l~v~~~~~~   89 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATV-EGKVSGLAFTSNG-----DLVATGWNAD   89 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEEC-SSEEEEEEECTTS-----CEEEEEECTT
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcC-CCCcceEEEcCCC-----CeEEEecCCc
Confidence            34455543 2368889998  88888888899998888663 3 2334444 5789999999999     7888888888


Q ss_pred             eEEEEECCCcce-eeeee--eccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-----------CcceE
Q 019326          111 FVSIFDADPFVL-LTSVK--VHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-----------KEASL  176 (343)
Q Consensus       111 ~i~iwd~~~~~~-~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----------~~~~~  176 (343)
                      .+..|+...... ...+.  ........+++.++++++++.+.++.+..+|...+.........           ..+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            888888744322 22222  13346889999999999998888999999998876533322211           12334


Q ss_pred             EEEeCCCCEEEEE--eCCcEEEEEcccceeEE---EecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeE--Ee
Q 019326          177 IKFDGSGEKFFMV--TEEKVGIHQAEDAKLLC---ELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAY--CI  248 (343)
Q Consensus       177 ~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~---~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--~~  248 (343)
                      +.++  +..++.+  ..+.+..++........   .+........++++ ++++.++...++.|..++.. ++...  ..
T Consensus       170 i~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~  246 (302)
T d2p4oa1         170 LKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  246 (302)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             cccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEec
Confidence            5554  4455555  67788888776543222   11223334567776 45666677778999999876 44332  23


Q ss_pred             cccccccEEEEEEEec
Q 019326          249 EDAHSARVKGIVVLTK  264 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~  264 (343)
                      . ..-...++++|...
T Consensus       247 ~-~~~~~pt~vafg~~  261 (302)
T d2p4oa1         247 E-QGVIGSTAVAFGQT  261 (302)
T ss_dssp             G-GTCTTEEEEEECCS
T ss_pred             C-CCCCCceEEEEcCC
Confidence            3 23356789999643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.03  E-value=1.8e-06  Score=68.27  Aligned_cols=206  Identities=15%  Similarity=0.071  Sum_probs=136.9

Q ss_pred             EEEec---CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee
Q 019326           47 TVAVS---GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL  123 (343)
Q Consensus        47 ~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  123 (343)
                      +..|+   +.+..+=-..+.|..||.++++.. .+..  ...+.++++.+++     .++ .++.+ .+..+|..+++..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~--~~~~~~i~~~~dg-----~l~-va~~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDS-----KQL-IASDD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETT-----EEE-EEETT-EEEEEETTTCCEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC--CCCcEEEEEecCC-----CEE-EEEeC-ccEEeecccceee
Confidence            44565   445555556788999999887643 3433  3678899999888     444 45555 5889999887644


Q ss_pred             eeeee----ccccEEEEEEecCCCEEEEEeC----CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE--eCCc
Q 019326          124 TSVKV----HKKGVNDLAVHHSGKLALTVGR----DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV--TEEK  193 (343)
Q Consensus       124 ~~~~~----~~~~v~~i~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  193 (343)
                      .....    ....++.+.+.|+|++.++...    .+.-.+|.+..++.......-...+.++++++++.++.+  ..+.
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~  171 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  171 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce
Confidence            33221    1236889999999987766542    234567777777655444444567789999999988777  5778


Q ss_pred             EEEEEcccc------eeE--EEec-CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEe
Q 019326          194 VGIHQAEDA------KLL--CELD-GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLT  263 (343)
Q Consensus       194 i~~~d~~~~------~~~--~~~~-~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~  263 (343)
                      |..|++...      +..  .... .......+++.. +++.++.-..+.|..||. .++.+..+. .....+++++|-.
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~-lP~~~~T~~~FGG  249 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIG  249 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEES
T ss_pred             eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEec-CCCCceEEEEEeC
Confidence            888876421      111  1111 344567788864 455555556788999996 588888887 4456789999974


Q ss_pred             c
Q 019326          264 K  264 (343)
Q Consensus       264 ~  264 (343)
                      .
T Consensus       250 ~  250 (295)
T d2ghsa1         250 P  250 (295)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=3e-06  Score=65.62  Aligned_cols=219  Identities=11%  Similarity=0.047  Sum_probs=142.0

Q ss_pred             CCCCeEEEEec--CceEE-EeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEEC
Q 019326           41 HLSPITTVAVS--GTAAA-SGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDA  117 (343)
Q Consensus        41 h~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~  117 (343)
                      +...+.+|+|+  .+.++ +-..++.|+..+++.......+... ...+..+++...+.    ++.++-...+.|.+.++
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-~~~p~~iAvD~~~~----~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGR----TIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTT----EEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec-cccccEEEEeccCC----eEEEeccCCCEEEEEec
Confidence            34457888988  45444 4456788999898766555445444 46788999986551    44456566789999999


Q ss_pred             CCcceeeeeeeccccEEEEEEecCCCEEEEEeCC---CeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE--eC
Q 019326          118 DPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD---DCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV--TE  191 (343)
Q Consensus       118 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~  191 (343)
                      +.......+......+..++++|...+++.....   ..|.--++............ ..+..+++++.++.++.+  ..
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~  188 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence            7654433333334578899999977666654332   23444455444333322222 456789999988888777  56


Q ss_pred             CcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEec
Q 019326          192 EKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTK  264 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~  264 (343)
                      +.|...++........+........+++..+.+.++-...+.|...|..+++.+..+.........++++.+.
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            7888888876655444443334467777555555666677889999999898877665234445566766554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=7.7e-07  Score=72.85  Aligned_cols=264  Identities=8%  Similarity=0.019  Sum_probs=143.9

Q ss_pred             EEEeeC--CCeEEEEE--cCCCee--eeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee-
Q 019326           55 AASGGT--DDTIHLYD--LSTSSS--LGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK-  127 (343)
Q Consensus        55 l~s~~~--dg~i~iwd--~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  127 (343)
                      |+.|+.  .+.|..+.  .++++.  +..........+.-|+|++++     +.|+++.. +.+..|.+.....+.... 
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~-----~~ly~~~~-~~~~~~~i~~~~~~~~~~~   78 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-----KNIYGAAM-KKWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-----SEEEEEEB-TEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC-----CEEEEEeC-CcEEEEEEeCCCCeEEEee
Confidence            555643  55675554  444443  222221114567789999999     67777654 567777764322222221 


Q ss_pred             -eccccEEEEEEecCCCEEEEEe---CCCeEEEEEccCCc------------ee----EEE--EcCCcceEEEEeCCCCE
Q 019326          128 -VHKKGVNDLAVHHSGKLALTVG---RDDCLAMVNLVRGR------------RS----FYH--KIGKEASLIKFDGSGEK  185 (343)
Q Consensus       128 -~~~~~v~~i~~~~~~~~l~~~~---~d~~i~~wd~~~~~------------~~----~~~--~~~~~~~~~~~~~~~~~  185 (343)
                       ........++++++++.++...   ..+.+..+.+....            ..    ...  .....+..+.|+|++++
T Consensus        79 ~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE
Confidence             1223445677888887433322   23555554432211            00    000  11234678999999999


Q ss_pred             EEEE--eCCcEEEEEcccc-eeE--EEe---cCCcceEEeeecC-CCeE-EEEeCCCcEEEEECCCCceeEEec------
Q 019326          186 FFMV--TEEKVGIHQAEDA-KLL--CEL---DGKKRILCAAPGE-NGVL-FTGGEDRSITAWDTNSGKVAYCIE------  249 (343)
Q Consensus       186 ~~~~--~~~~i~~~d~~~~-~~~--~~~---~~~~~i~~~~~~~-~~~l-~~~~~dg~i~i~d~~~~~~~~~~~------  249 (343)
                      ++++  ....|.+|+.... ...  ...   ........+.|++ ++++ ++...++.|.+|++..++......      
T Consensus       159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~  238 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence            9888  4667888876543 222  111   1345678899984 4555 445568899999987654322111      


Q ss_pred             ------------ccccccEEEEEEEecCCCCCCCCCCeEEEEEcC------CCcEEEEeccCccccC-CCccc-cccccc
Q 019326          250 ------------DAHSARVKGIVVLTKNDGGSTAENPYLVASASS------DGVICVWDVRMAIKEK-PLPLA-EAKTNS  309 (343)
Q Consensus       250 ------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~-~~~~~-~~~~~~  309 (343)
                                  ..+......+.++|+++         +|+++..      .+.|..|++....... ...+. ....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~---------~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~  309 (365)
T d1jofa_         239 IPPGIPDRDPETGKGLYRADVCALTFSGK---------YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG  309 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred             ccccccccccccccccCCccceEECCCCC---------EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCC
Confidence                        01122456788888877         7776632      2337777776532111 00111 112234


Q ss_pred             ceeEEEcCC-CCceeccc-cCCCCCC
Q 019326          310 RLTCLAGSS-TKSFKRPQ-IGDSAPK  333 (343)
Q Consensus       310 ~i~~~~~s~-~~~~~~~~-~~~~~~~  333 (343)
                      ...+++++| +++++++. ..++.+.
T Consensus       310 ~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         310 HSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccEEEecCCCCCEEEEEeCCCCeEE
Confidence            567799997 78866554 4444333

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.94  E-value=2.5e-06  Score=68.35  Aligned_cols=230  Identities=10%  Similarity=0.006  Sum_probs=142.6

Q ss_pred             CCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC----CCeEEEEE
Q 019326           83 SSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR----DDCLAMVN  158 (343)
Q Consensus        83 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----d~~i~~wd  158 (343)
                      ...+..++|.+++     +++++-...+.|..|+.++.+....+.........++++++|+++++...    .+.+...+
T Consensus        39 ~~~lEG~~~D~~G-----~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          39 GLQLEGLNFDRQG-----QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCCEEEEEECTTS-----CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             CcCcEeCEECCCC-----CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            4556789999988     67777778899999998887666655555667889999999988776543    33455555


Q ss_pred             ccCCceeEEEEc---CCcceEEEEeCCCCEEEEEeC-------CcEEEEEcccceeEEEecCCcceEEeeecC-CCeE-E
Q 019326          159 LVRGRRSFYHKI---GKEASLIKFDGSGEKFFMVTE-------EKVGIHQAEDAKLLCELDGKKRILCAAPGE-NGVL-F  226 (343)
Q Consensus       159 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~  226 (343)
                      ............   ...+..+++.++|++.++...       +.+..++............-...+.+++++ ++.| +
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence            555544333322   234667899999987776522       224444443333222222333456788884 5544 5


Q ss_pred             EEeCCCcEEEEECCCC-ceeEEe------cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCC
Q 019326          227 TGGEDRSITAWDTNSG-KVAYCI------EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKP  299 (343)
Q Consensus       227 ~~~~dg~i~i~d~~~~-~~~~~~------~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  299 (343)
                      +-+..+.|..||+... ......      ..........|++..++.         +.++....+.|.+||.. ++....
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~---------l~Va~~~~g~V~~~~p~-G~~l~~  263 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN---------LYVAMYGQGRVLVFNKR-GYPIGQ  263 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC---------EEEEEETTTEEEEECTT-SCEEEE
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC---------EEEEEcCCCEEEEECCC-CcEEEE
Confidence            5567889999998643 211111      101123356788887776         88888889999999964 432222


Q ss_pred             Cccc--ccccccceeEEEcCCCCceecccc
Q 019326          300 LPLA--EAKTNSRLTCLAGSSTKSFKRPQI  327 (343)
Q Consensus       300 ~~~~--~~~~~~~i~~~~~s~~~~~~~~~~  327 (343)
                      +.+.  .......++|+++.+++..++...
T Consensus       264 i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         264 ILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            2221  112233578999988766554433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.94  E-value=1.5e-06  Score=69.41  Aligned_cols=190  Identities=11%  Similarity=0.052  Sum_probs=123.3

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCCeeeeEeccCCC---CCeEEEEEeCCCCCCCCceEEEeeC----------
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTSSSLGAIHHHES---SSVTSLAFYTPQNLSVPRNLFSTSA----------  108 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~l~~~~~~~~~~~~~l~s~~~----------  108 (343)
                      .-..++|+  ++.++++...+.|...+.+.............   ...+.+++.+++     ++.++-..          
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-----~lyvtd~~~~~~~~~~~~  146 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-----NLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-----CEEEEECBCBCTTSCCCB
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-----CEEEecCccCcccccccc
Confidence            35678888  67788877777788889875543221111101   135779999998     55555321          


Q ss_pred             -----CCeEEEEECCCcceeeeeeeccccEEEEEEecCCC-----EEEEEeCCCeEEEEEccCCceeEEE----EcC---
Q 019326          109 -----DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGK-----LALTVGRDDCLAMVNLVRGRRSFYH----KIG---  171 (343)
Q Consensus       109 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~l~~~~~d~~i~~wd~~~~~~~~~~----~~~---  171 (343)
                           .|.|..++.+. +... +...-...+.++|+|++.     ++++-+..+.|..||+.....+...    ...   
T Consensus       147 ~~~~~~G~v~~~~~dg-~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         147 SMQEKFGSIYCFTTDG-QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTTS-CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             eeccCCceEEEEeecC-ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence                 23455555432 3322 222333457899998764     4555567889999988654433211    111   


Q ss_pred             -CcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEecC-CcceEEeeecCC-C-eEEEEeCCCcEEEEECC
Q 019326          172 -KEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELDG-KKRILCAAPGEN-G-VLFTGGEDRSITAWDTN  240 (343)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~-~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~  240 (343)
                       .....+++..+|+.+++. ..+.|.+||...++....+.. ....++++|.++ + ++++.+.+|.|..+++.
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence             234569999999987777 788999999988887776663 456788999753 3 55667778889888864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.1e-05  Score=62.49  Aligned_cols=214  Identities=11%  Similarity=0.040  Sum_probs=127.9

Q ss_pred             CCCCCeEEEEec--CceEEEeeCCC---eEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCCeEE
Q 019326           40 AHLSPITTVAVS--GTAAASGGTDD---TIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADGFVS  113 (343)
Q Consensus        40 ~h~~~v~~l~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~  113 (343)
                      .+...+.+-+|+  |+.||-.....   .+.+.+..++... .+..+ ........|+|++     +.++... .++...
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~spdg-----~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF-PRHNGAPAFSPDG-----SKLAFALSKTGSLN  108 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC-SSCEEEEEECTTS-----SEEEEEECTTSSCE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeee-ecccccceecCCC-----CeeeEeeecCCccc
Confidence            346678899999  88888654432   4666676665544 33344 5788899999999     5555443 344333


Q ss_pred             EEE--CCCcceeeeeeeccccEEEEEEecCCCEEEEE-eCCC--eEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          114 IFD--ADPFVLLTSVKVHKKGVNDLAVHHSGKLALTV-GRDD--CLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       114 iwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      ++.  ....... .............+++++..++.. ..++  .|...++..+................++|+++.++.
T Consensus       109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         109 LYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             eeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEE
Confidence            333  2222222 222233444555677776554444 3444  456666666654444444455667899999999888


Q ss_pred             E--eCCcEEE--EEcccceeEEEecCCcceEEeeec-CCCeEEEEeC---CCcEEEEECCCCceeEEecccccccEEEEE
Q 019326          189 V--TEEKVGI--HQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGE---DRSITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       189 ~--~~~~i~~--~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      .  ..+...+  ++...+. ...+..........|+ +++.|+-.+.   ...|+++++..+. ...+. .....+...+
T Consensus       188 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt-~~~g~~~~p~  264 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-ATDGQVKFPA  264 (269)
T ss_dssp             EEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-CSSSEEEEEE
T ss_pred             EeecCCceeeeEeeccccc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEe-CCCCcEEeEE
Confidence            7  3444444  4444443 3444455566677888 4565553332   3468899998655 45565 5667778888


Q ss_pred             EEec
Q 019326          261 VLTK  264 (343)
Q Consensus       261 ~~~~  264 (343)
                      |+|-
T Consensus       265 WSP~  268 (269)
T d2hqsa1         265 WSPY  268 (269)
T ss_dssp             ECCC
T ss_pred             eCCC
Confidence            8873

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.80  E-value=1.5e-05  Score=69.24  Aligned_cols=235  Identities=13%  Similarity=0.080  Sum_probs=142.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEE-EEecCceEEEeeC------CCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITT-VAVSGTAAASGGT------DDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~~~------dg~i~iwd~~~~~~   74 (343)
                      +++.++.|+.|.-.|.++       ++........... ....+++ -.+.++.++.|..      .|.|+-+|..+|+.
T Consensus       123 ~v~~~t~dg~l~Alda~t-------G~~~w~~~~~d~~-~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAET-------GETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEEEeCCCCeEeecccc-------Cceeccccccccc-cccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE
Confidence            478888899998888877       3332211111000 0111111 1122666777654      48999999999999


Q ss_pred             eeEeccCC------------------------------------CCC-eEEEEEeCCCCCCCCceEEEeeC---------
Q 019326           75 LGAIHHHE------------------------------------SSS-VTSLAFYTPQNLSVPRNLFSTSA---------  108 (343)
Q Consensus        75 ~~~~~~~~------------------------------------~~~-v~~l~~~~~~~~~~~~~l~s~~~---------  108 (343)
                      +..+....                                    ... -..+++.+..     .++..+..         
T Consensus       195 ~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-----~lvy~~tg~~~p~~~~~  269 (596)
T d1w6sa_         195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-----NLIYFGTGNPAPWNETM  269 (596)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-----TEEEEECCCCSCSCGGG
T ss_pred             EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCC-----Ceeeccccccccccccc
Confidence            98864320                                    011 1223444444     34444432         


Q ss_pred             -------CCeEEEEECCCcceeeeeeeccc---------cEEEEEE-ecCC---CEEEEEeCCCeEEEEEccCCceeEEE
Q 019326          109 -------DGFVSIFDADPFVLLTSVKVHKK---------GVNDLAV-HHSG---KLALTVGRDDCLAMVNLVRGRRSFYH  168 (343)
Q Consensus       109 -------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~i~~-~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~  168 (343)
                             ...|...|+++++.+..++....         ...-+.. ..++   ..++....+|.+.++|..+++.+...
T Consensus       270 r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         270 RPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             SCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence                   24577889999998887764211         1111221 2233   46778889999999999999877544


Q ss_pred             EcCCc----------------------------------------ceEEEEeCCCCEEEEE-e-----------------
Q 019326          169 KIGKE----------------------------------------ASLIKFDGSGEKFFMV-T-----------------  190 (343)
Q Consensus       169 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~-~-----------------  190 (343)
                      .....                                        -...+++|+...++.. .                 
T Consensus       350 ~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~  429 (596)
T d1w6sa_         350 KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQ  429 (596)
T ss_dssp             ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccc
Confidence            32110                                        0124566665555443 1                 


Q ss_pred             ----------------------CCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEE
Q 019326          191 ----------------------EEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYC  247 (343)
Q Consensus       191 ----------------------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  247 (343)
                                            .+.+.-||+.+++.+.+.....+...-.++ .+++++.|+.||.++.+|.++|+.+.+
T Consensus       430 ~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~  509 (596)
T d1w6sa_         430 FFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (596)
T ss_dssp             CCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE
Confidence                                  135777888888887776644333322222 577888999999999999999999998


Q ss_pred             ec
Q 019326          248 IE  249 (343)
Q Consensus       248 ~~  249 (343)
                      +.
T Consensus       510 ~~  511 (596)
T d1w6sa_         510 FK  511 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.79  E-value=3.5e-06  Score=72.97  Aligned_cols=252  Identities=12%  Similarity=0.054  Sum_probs=149.4

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEE-EecCceEEEee------CCCeEEEEEcCCCee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTV-AVSGTAAASGG------TDDTIHLYDLSTSSS   74 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~l~s~~------~dg~i~iwd~~~~~~   74 (343)
                      +|+.++.|+.|...|.++       ++......+.... ....+++- ...++.++.+.      .+|.|+-+|+.+|+.
T Consensus       117 ~i~~~~~~g~l~alda~t-------G~~~w~~~~~~~~-~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKT-------GKINWEVEVCDPK-VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEECCCGG-GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             eEEEEeCCCcEEeeehhh-------hhhhccccccccc-cccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE
Confidence            577888999988888887       3332222111110 11111111 11245555555      378899999999999


Q ss_pred             eeEeccCC------------------------------------CCCe-EEEEEeCCCCCCCCceEEEeeC---------
Q 019326           75 LGAIHHHE------------------------------------SSSV-TSLAFYTPQNLSVPRNLFSTSA---------  108 (343)
Q Consensus        75 ~~~~~~~~------------------------------------~~~v-~~l~~~~~~~~~~~~~l~s~~~---------  108 (343)
                      +..+....                                    ...+ ...++.+..     ..++.+..         
T Consensus       189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~-----g~~y~~tg~~~p~~~~~  263 (571)
T d2ad6a1         189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-----NLFYYGSGNPAPWNETM  263 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-----TEEEEECCCCSCSCGGG
T ss_pred             EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc-----CeeeeecccccCccccc
Confidence            88764320                                    0111 123444544     34443333         


Q ss_pred             -------CCeEEEEECCCcceeeeeeeccc---------cEEEEEEecCCC---EEEEEeCCCeEEEEEccCCceeEEEE
Q 019326          109 -------DGFVSIFDADPFVLLTSVKVHKK---------GVNDLAVHHSGK---LALTVGRDDCLAMVNLVRGRRSFYHK  169 (343)
Q Consensus       109 -------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~  169 (343)
                             ...+...|.++++.+..++....         .........+++   .++.++.+|.+.+.|..+++.+....
T Consensus       264 r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~  343 (571)
T d2ad6a1         264 RPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             SCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeec
Confidence                   34678889999998888774322         112222233442   56788899999999999998764432


Q ss_pred             cCC----------------------------------------cceEEEEeCCCCEEEEE-eC-----------------
Q 019326          170 IGK----------------------------------------EASLIKFDGSGEKFFMV-TE-----------------  191 (343)
Q Consensus       170 ~~~----------------------------------------~~~~~~~~~~~~~~~~~-~~-----------------  191 (343)
                      ...                                        .-...+++|+...+++. .+                 
T Consensus       344 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~  423 (571)
T d2ad6a1         344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF  423 (571)
T ss_dssp             SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             cCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcc
Confidence            210                                        00125667776666543 21                 


Q ss_pred             --------------------CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecc
Q 019326          192 --------------------EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED  250 (343)
Q Consensus       192 --------------------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  250 (343)
                                          +.+.-+|+.+++.+.+.....+..+-... .++++++|+.||.++.+|.++|+.+.++..
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence                                35777888888888777644332221122 577888999999999999999999998873


Q ss_pred             cccccEEEEEEEecCC
Q 019326          251 AHSARVKGIVVLTKND  266 (343)
Q Consensus       251 ~h~~~v~~~~~~~~~~  266 (343)
                      +....-.-+.+..+++
T Consensus       504 ~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         504 PSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             SSCCCSCCEEEEETTE
T ss_pred             CCCceecceEEEECCE
Confidence            3222222244555554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.66  E-value=2.9e-05  Score=66.94  Aligned_cols=234  Identities=14%  Similarity=0.143  Sum_probs=142.6

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCC--eEE-EEecCceEEEeeC------CCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSP--ITT-VAVSGTAAASGGT------DDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~-l~~~~~~l~s~~~------dg~i~iwd~~~~   72 (343)
                      +++.++.++.|.-.|..+       ++......   ...+...  ++. -.+....++.+..      .|.|.-+|.++|
T Consensus       119 ~v~~~~~~g~l~Alda~t-------G~~~w~~~---~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG  188 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKT-------GKAIWSQQ---TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG  188 (560)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEE---CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             eEEEEeCCCEEEEEECCC-------CcEEeccC---ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCc
Confidence            477888889888888777       33222111   1111111  110 0111444555432      377999999999


Q ss_pred             eeeeEeccCC-----------------------------CCCe-EEEEEeCCCCCCCCceEEEeeC--------------
Q 019326           73 SSLGAIHHHE-----------------------------SSSV-TSLAFYTPQNLSVPRNLFSTSA--------------  108 (343)
Q Consensus        73 ~~~~~~~~~~-----------------------------~~~v-~~l~~~~~~~~~~~~~l~s~~~--------------  108 (343)
                      +.+..+..-.                             ...+ ..+++.+..     .+++.+..              
T Consensus       189 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~-----~l~y~~tgn~~~~~~~~~~~~~  263 (560)
T d1kv9a2         189 KLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-----DLLYVGTGNGSPWNREVRSPGG  263 (560)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-----TEEEEECCCEESSCHHHHSTTC
T ss_pred             eEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccccc-----CeeeecCCCCcccccccccccC
Confidence            9998875310                             0111 123445544     33333221              


Q ss_pred             -----CCeEEEEECCCcceeeeeeeccccE---------EEEEEecCC---CEEEEEeCCCeEEEEEccCCceeEEEEcC
Q 019326          109 -----DGFVSIFDADPFVLLTSVKVHKKGV---------NDLAVHHSG---KLALTVGRDDCLAMVNLVRGRRSFYHKIG  171 (343)
Q Consensus       109 -----dg~i~iwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  171 (343)
                           ...|...|+++++.+..++.....+         .-.....++   ..++.+..+|.+.++|..+++.+......
T Consensus       264 g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~  343 (560)
T d1kv9a2         264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (560)
T ss_dssp             CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             CccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccc
Confidence                 2457778889998887776432211         112222233   46777888999999999999877554332


Q ss_pred             Cc-------------------------------------ceEEEEeCCCCEEEEE-e-----------------------
Q 019326          172 KE-------------------------------------ASLIKFDGSGEKFFMV-T-----------------------  190 (343)
Q Consensus       172 ~~-------------------------------------~~~~~~~~~~~~~~~~-~-----------------------  190 (343)
                      ..                                     -...+++|+...+++. .                       
T Consensus       344 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~  423 (560)
T d1kv9a2         344 KVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAA  423 (560)
T ss_dssp             CCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSS
T ss_pred             ccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccccccccc
Confidence            10                                     0135677777766654 2                       


Q ss_pred             -------------CCcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecc
Q 019326          191 -------------EEKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIED  250 (343)
Q Consensus       191 -------------~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  250 (343)
                                   .+.+.-+|+.+++.+.++....+...-.+. .++++++|+.||.++.+|.++|+.+.++..
T Consensus       424 ~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         424 GFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence                         145778899999999888754443322222 577889999999999999999999998873

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.1e-05  Score=66.22  Aligned_cols=297  Identities=7%  Similarity=-0.057  Sum_probs=157.0

Q ss_pred             ccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEEEe---------eCCCeEEEEEcCCCeee
Q 019326            7 SYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAASG---------GTDDTIHLYDLSTSSSL   75 (343)
Q Consensus         7 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~---------~~dg~i~iwd~~~~~~~   75 (343)
                      ..+|.|.+||+.+       ++...+.....+  ..-.+....|+  +++++..         +..+.+.++|+.++...
T Consensus        34 ~~~g~i~~~~~~~-------~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~  104 (465)
T d1xfda1          34 EQKGTVRLWNVET-------NTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ  104 (465)
T ss_dssp             CSSSCEEEBCGGG-------CCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred             eCCCcEEEEECCC-------CCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee
Confidence            4578899999887       222111111111  22345566676  6776654         33578899999987654


Q ss_pred             eEe--ccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeee-cccc-----------------EEE
Q 019326           76 GAI--HHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKV-HKKG-----------------VND  135 (343)
Q Consensus        76 ~~~--~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~-----------------v~~  135 (343)
                      ...  ... ...+....|+|++     +.++-.. ++.|.+.+..++..++.... ..+.                 -..
T Consensus       105 ~l~~~~~~-~~~l~~~~wSPDG-----~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a  177 (465)
T d1xfda1         105 SLDPPEVS-NAKLQYAGWGPKG-----QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA  177 (465)
T ss_dssp             ECCCTTCC-SCCCSBCCBCSST-----TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred             eccCccCC-ccccceeeeccCC-----ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence            332  222 3556678999999     6666654 56788888876655443321 1111                 146


Q ss_pred             EEEecCCCEEEEEeCC-Ce---------------------------------EEEEEccCCceeEEEEcC-------Ccc
Q 019326          136 LAVHHSGKLALTVGRD-DC---------------------------------LAMVNLVRGRRSFYHKIG-------KEA  174 (343)
Q Consensus       136 i~~~~~~~~l~~~~~d-~~---------------------------------i~~wd~~~~~~~~~~~~~-------~~~  174 (343)
                      +-|+|||++|+....| ..                                 +.++|+..+.........       .-+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            7799999999886532 22                                 334444333221111100       114


Q ss_pred             eEEEEeCCCCEEEEEeC-----CcEEEEEcccceeEEEec--CCcce----EEeeec-CCCe--EE-EEeCCC--cEEEE
Q 019326          175 SLIKFDGSGEKFFMVTE-----EKVGIHQAEDAKLLCELD--GKKRI----LCAAPG-ENGV--LF-TGGEDR--SITAW  237 (343)
Q Consensus       175 ~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~--~~~~i----~~~~~~-~~~~--l~-~~~~dg--~i~i~  237 (343)
                      ..+.|+++++.++...+     ..+.++|..+++....+.  ....|    ....|+ +++.  ++ ....+|  .++.+
T Consensus       258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred             eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence            56889999886666522     247778888887665543  22211    122344 3332  22 222232  34443


Q ss_pred             ECC------CCceeEEecccccccEEEE-EEEecCCCCCCCCCCeEEEEEcCCC--cEEEEeccCccccCCCccc-cccc
Q 019326          238 DTN------SGKVAYCIEDAHSARVKGI-VVLTKNDGGSTAENPYLVASASSDG--VICVWDVRMAIKEKPLPLA-EAKT  307 (343)
Q Consensus       238 d~~------~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~  307 (343)
                      ++.      .+..+..+. ...-.|..+ .+...+.        ...+++..++  .-++|.+.-........+. ....
T Consensus       338 ~~~~~~~~~~~~~~~~LT-~G~w~V~~i~~~d~~~~--------~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~  408 (465)
T d1xfda1         338 TVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGN--------KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE  408 (465)
T ss_dssp             EEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTT--------EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred             EeccccccCCCceeEEec-cCCceEEEEEEEcCCCC--------EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC
Confidence            321      233344444 233445555 4665554        1344555442  4456665432111111111 1223


Q ss_pred             ccceeEEEcCCCCceeccccC
Q 019326          308 NSRLTCLAGSSTKSFKRPQIG  328 (343)
Q Consensus       308 ~~~i~~~~~s~~~~~~~~~~~  328 (343)
                      ......+.+||++++.+....
T Consensus       409 ~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         409 NCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             SCCCCEEEECTTSSEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEee
Confidence            345778999999999874443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.58  E-value=9.2e-05  Score=59.77  Aligned_cols=221  Identities=11%  Similarity=0.098  Sum_probs=139.4

Q ss_pred             CceEEEee-CCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------------------CeE
Q 019326           52 GTAAASGG-TDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------------------GFV  112 (343)
Q Consensus        52 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------------------g~i  112 (343)
                      |++|+... .+.+|-+-|+++.+..+.+.-.....+..++..++.+   ..+++.++.+                  +.+
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~---T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR---SNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB---CSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCC---eEEEEccCccccccCCCCccccchhhcceEE
Confidence            56666554 6888999999999886655433256778777765432   1577776663                  236


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCC--------------------------------------CeE
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRD--------------------------------------DCL  154 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------------------------------------~~i  154 (343)
                      .++|.++++...++.. .+....++++++|+++++.+.+                                      +.+
T Consensus       176 t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            7889998888777764 3456679999999999887743                                      112


Q ss_pred             EEEEccCC---ceeEEEEcCCcceEEEEeCCCCEEEEE--eCCcEEEEEccccee------------EEEecCCcceEEe
Q 019326          155 AMVNLVRG---RRSFYHKIGKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKL------------LCELDGKKRILCA  217 (343)
Q Consensus       155 ~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~------------~~~~~~~~~i~~~  217 (343)
                      .+.|.+..   ..+.....+..+..+.++|+|++++++  -+..+.++|++....            ..+....-....-
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            44444321   233345566777889999999999999  799999999975321            1222223334455


Q ss_pred             eecCCCeE-EEEeCCCcEEEEECCCC----------ceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEc
Q 019326          218 APGENGVL-FTGGEDRSITAWDTNSG----------KVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASAS  281 (343)
Q Consensus       218 ~~~~~~~l-~~~~~dg~i~i~d~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  281 (343)
                      +|++.... .+---|..|.-|++...          ..+..+. -|-.+ -.+. .+.+.  ...++|++|++..
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~-v~y~~-gh~~-~~~g~--t~~~dgk~l~~~n  404 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQP-GHLK-TVMGE--TLDATNDWLVCLS  404 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCE-EEEE-ETTTT--STTCCSSEEEEEE
T ss_pred             ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccc-cccCC-CCCc-cCcCC--cCCCCCCEEEEec
Confidence            66644444 44457999999998432          3344444 33222 2222 22222  2367777888875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-05  Score=66.69  Aligned_cols=143  Identities=12%  Similarity=0.056  Sum_probs=93.4

Q ss_pred             Eec-CceEEEeeCCCeEEEEEcCCCeeeeEeccC--CCCCeEEEEEeCCCCCCCCceEEEee---------CCCeEEEEE
Q 019326           49 AVS-GTAAASGGTDDTIHLYDLSTSSSLGAIHHH--ESSSVTSLAFYTPQNLSVPRNLFSTS---------ADGFVSIFD  116 (343)
Q Consensus        49 ~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~~~l~s~~---------~dg~i~iwd  116 (343)
                      .|. +..++.-..+|.|.+||+.+++....+...  ....+....|+|++     ++++...         ..+.+.++|
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-----~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-----EYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-----SEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC-----CeEEEEEcccceeEeeccccEEEEE
Confidence            455 333344456788999999988764444332  13467788899999     6666553         357889999


Q ss_pred             CCCcceeeee--eeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcC-------------------Ccce
Q 019326          117 ADPFVLLTSV--KVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIG-------------------KEAS  175 (343)
Q Consensus       117 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-------------------~~~~  175 (343)
                      +.+++.....  ......+....|+|+|+.++-.. ++.|.+.+...+........+                   ..-.
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccc
Confidence            9886643322  22234556688999999888765 567888888766544333221                   1124


Q ss_pred             EEEEeCCCCEEEEE--eCCcEEEE
Q 019326          176 LIKFDGSGEKFFMV--TEEKVGIH  197 (343)
Q Consensus       176 ~~~~~~~~~~~~~~--~~~~i~~~  197 (343)
                      .+-|+|+|++|+..  .+..+..+
T Consensus       177 a~~WSPDgk~iaf~~~D~s~V~~~  200 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAINDSRVPIM  200 (465)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEE
T ss_pred             eEEECCCCCeEEEEEeccccccee
Confidence            67899999999987  44444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.46  E-value=0.00013  Score=62.90  Aligned_cols=234  Identities=11%  Similarity=0.122  Sum_probs=138.1

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEE---EecCceEEEeeC------CCeEEEEEcCCC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTV---AVSGTAAASGGT------DDTIHLYDLSTS   72 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---~~~~~~l~s~~~------dg~i~iwd~~~~   72 (343)
                      +++.++.|+.+...|..+       ++..-....  ..+....+...   .+.++.++.++.      .|.|+.+|..+|
T Consensus       130 ~v~~~t~~g~l~alda~t-------G~~~W~~~~--~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG  200 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAAT-------GKEVWHQNT--FEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG  200 (573)
T ss_dssp             EEEEECTTSEEEEEETTT-------CCEEEEEET--TTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             cEEEEecccceeeecccc-------ccceecccC--ccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCc
Confidence            466788888888888776       332211111  01111111110   111555665543      478999999999


Q ss_pred             eeeeEeccCC---C---------------------------CCe-EEEEEeCCCCCCCCceEEEeeC-------------
Q 019326           73 SSLGAIHHHE---S---------------------------SSV-TSLAFYTPQNLSVPRNLFSTSA-------------  108 (343)
Q Consensus        73 ~~~~~~~~~~---~---------------------------~~v-~~l~~~~~~~~~~~~~l~s~~~-------------  108 (343)
                      +.+..+....   .                           ..+ ...++.+..     ..++.+..             
T Consensus       201 ~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~-----g~~~~~~g~~~~~~~~~~~~~  275 (573)
T d1kb0a2         201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-----NTMYVGTGNGSPWSHKVRSPK  275 (573)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-----TEEEEECCCEESSCHHHHSTT
T ss_pred             cceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhh-----CeeeeccCCCccccccccccc
Confidence            9998874320   0                           111 123444444     23332221             


Q ss_pred             ------CCeEEEEECCCcceeeeeeeccc---------cEEEEEEecCC---CEEEEEeCCCeEEEEEccCCceeEEEEc
Q 019326          109 ------DGFVSIFDADPFVLLTSVKVHKK---------GVNDLAVHHSG---KLALTVGRDDCLAMVNLVRGRRSFYHKI  170 (343)
Q Consensus       109 ------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~  170 (343)
                            ...|...|.++++....++....         +........++   ..++.++.+|.+.++|..+++.+.....
T Consensus       276 ~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~  355 (573)
T d1kb0a2         276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF  355 (573)
T ss_dssp             CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             cccccccceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccc
Confidence                  12466677788877766653211         11222222233   4677888899999999999987755432


Q ss_pred             CC------------------------------------cceEEEEeCCCCEEEEE-eC----------------------
Q 019326          171 GK------------------------------------EASLIKFDGSGEKFFMV-TE----------------------  191 (343)
Q Consensus       171 ~~------------------------------------~~~~~~~~~~~~~~~~~-~~----------------------  191 (343)
                      ..                                    .-..++++|+...+++. .+                      
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (573)
T d1kb0a2         356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ  435 (573)
T ss_dssp             SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred             cccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccc
Confidence            10                                    00124677776666653 21                      


Q ss_pred             ---------------------CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEec
Q 019326          192 ---------------------EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIE  249 (343)
Q Consensus       192 ---------------------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  249 (343)
                                           +.+.-+|+.+++.+.+.+...+...-... .++++++|+.||.++.||.++|+.+.++.
T Consensus       436 ~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence                                 24777888899988887744433221122 67889999999999999999999999887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=0.00016  Score=56.69  Aligned_cols=213  Identities=11%  Similarity=0.014  Sum_probs=137.1

Q ss_pred             EEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeE
Q 019326           87 TSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSF  166 (343)
Q Consensus        87 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  166 (343)
                      -+-.|.+..+    .++++=-..+.|.-||.++++. ..+. ....+.++++.+++.++++ +.+ .+..+|..+++...
T Consensus        21 Egp~wd~~~~----~l~wvDi~~~~I~r~d~~~g~~-~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          21 EGPTFDPASG----TAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEETTTT----EEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             eCCeEECCCC----EEEEEECCCCEEEEEECCCCeE-EEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeE
Confidence            3456776551    4555555678899999988653 3333 3557889999999876665 444 69999999888655


Q ss_pred             EEEcC-----CcceEEEEeCCCCEEEEE-e----CCcEEEEEcccceeEEEecCCcceEEeeecC-CC-eEEEEeCCCcE
Q 019326          167 YHKIG-----KEASLIKFDGSGEKFFMV-T----EEKVGIHQAEDAKLLCELDGKKRILCAAPGE-NG-VLFTGGEDRSI  234 (343)
Q Consensus       167 ~~~~~-----~~~~~~~~~~~~~~~~~~-~----~~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i  234 (343)
                      .....     ..++.+.+.|+|++.++. .    .+.-.+|.+..++...........+.+++++ ++ ++++-+..+.|
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeeccccee
Confidence            44332     236678999999987776 2    2355677777776665555444566788874 34 55666778899


Q ss_pred             EEEECCCC------ce--eEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccc
Q 019326          235 TAWDTNSG------KV--AYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAK  306 (343)
Q Consensus       235 ~i~d~~~~------~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  306 (343)
                      ..|++...      +.  ...+. +......++++..++.         +.++.-..+.|..||.. ++.     +..+.
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~~Gn---------lWva~~~~g~V~~~dp~-G~~-----~~~i~  236 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDTD-GNH-----IARYE  236 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECTT-CCE-----EEEEE
T ss_pred             eEeeecccccccccceEEEeccC-cccccccceEEcCCCC---------EEeeeeCCCceEEecCC-CcE-----eeEec
Confidence            99987421      11  12222 3445678888877775         66666667889999965 322     22222


Q ss_pred             cc-cceeEEEcC-CCCcee
Q 019326          307 TN-SRLTCLAGS-STKSFK  323 (343)
Q Consensus       307 ~~-~~i~~~~~s-~~~~~~  323 (343)
                      .. .++++++|- ++.+.+
T Consensus       237 lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         237 VPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             CSCSBEEEEEEESTTSCEE
T ss_pred             CCCCceEEEEEeCCCCCEE
Confidence            22 358888885 454433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=0.00017  Score=55.78  Aligned_cols=220  Identities=12%  Similarity=0.038  Sum_probs=119.7

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEee-CCC-----eEEEEECCCcceeee
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTS-ADG-----FVSIFDADPFVLLTS  125 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~-~dg-----~i~iwd~~~~~~~~~  125 (343)
                      |+.++-.+ +|.|.+.|+.+++.. .+..+ ...+...+|+|++     +.|+... .++     .|.+++..+++....
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~-~~~~~~p~~SPDG-----~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTR-KIVSN-LGVINNARFFPDG-----RKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEE-EEECS-SSEEEEEEECTTS-----SEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEE-EEecC-CCcccCEEECCCC-----CEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            56665443 467888899987765 45445 5788999999999     6666443 222     477778777665433


Q ss_pred             eee------ccccEEEEEEecCCCEEEEEeCC------CeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEEE-e-C
Q 019326          126 VKV------HKKGVNDLAVHHSGKLALTVGRD------DCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFMV-T-E  191 (343)
Q Consensus       126 ~~~------~~~~v~~i~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  191 (343)
                      ...      .........|+|+++.|+.....      ..+...+...+...  .......... +.+++..++.. . .
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV--PLNLGPATHI-LFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE--ECCSCSCSEE-EEETTEEEEEESCSC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE--EecCCcccee-eecCCCeEEEeeccc
Confidence            211      12345678899999988875432      23455555544322  1112222223 33333333332 1 1


Q ss_pred             -----------CcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeCC--CcEEEEECCCCceeEEecccccccEEE
Q 019326          192 -----------EKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGED--RSITAWDTNSGKVAYCIEDAHSARVKG  258 (343)
Q Consensus       192 -----------~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~  258 (343)
                                 ...........................+.++..+.....+  ..|.++|+.+++ ...+.......+  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~lt~~~~~~~--  237 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKD-LRKHTSFTDYYP--  237 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCS-CEECCCCCSSCE--
T ss_pred             cceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCc-eEEeecCCCccc--
Confidence                       1122222233333333333444444444444444444433  357788887655 344441222333  


Q ss_pred             EEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcc
Q 019326          259 IVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAI  295 (343)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  295 (343)
                      ..|+|++.         .|+.. .++.|+++|+.+++
T Consensus       238 ~~~SpDG~---------~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         238 RHLNTDGR---------RILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EEEEESSS---------CEEEE-ETTEEEEECTTTCC
T ss_pred             ccCcCCCC---------EEEEE-eCCEEEEEECCCCC
Confidence            35788887         55543 36789999998874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.40  E-value=0.00038  Score=59.91  Aligned_cols=155  Identities=12%  Similarity=0.032  Sum_probs=96.0

Q ss_pred             EEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCC---CCCeEEEEEeCCCCCCCCceEEEee------CCCeEEEEEC
Q 019326           47 TVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHE---SSSVTSLAFYTPQNLSVPRNLFSTS------ADGFVSIFDA  117 (343)
Q Consensus        47 ~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~~~~~l~s~~------~dg~i~iwd~  117 (343)
                      .+++.+..++.++.||.+.-.|.++|+.+.......   ...++.--....+      .++.+.      ..|.|+-+|+
T Consensus       110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~------~vivg~~~~~~~~~G~v~a~D~  183 (571)
T d2ad6a1         110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD------TVLMGCSGAELGVRGAVNAFDL  183 (571)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT------EEEEECBCGGGTCCCEEEEEET
T ss_pred             cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC------eEEEeeccccccccCcEEEEEC
Confidence            356666778888999999999999999887664320   1112211111123      445544      3678999999


Q ss_pred             CCcceeeeeeecc-------------------------------------ccE-EEEEEecCCCEEEEEeC---------
Q 019326          118 DPFVLLTSVKVHK-------------------------------------KGV-NDLAVHHSGKLALTVGR---------  150 (343)
Q Consensus       118 ~~~~~~~~~~~~~-------------------------------------~~v-~~i~~~~~~~~l~~~~~---------  150 (343)
                      .+++.+..+....                                     ..+ ...++.+....++.+..         
T Consensus       184 ~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~  263 (571)
T d2ad6a1         184 KTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETM  263 (571)
T ss_dssp             TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred             CCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccc
Confidence            9999988765321                                     111 23455666665555544         


Q ss_pred             -------CCeEEEEEccCCceeEEEEcC----------CcceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEE
Q 019326          151 -------DDCLAMVNLVRGRRSFYHKIG----------KEASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       151 -------d~~i~~wd~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~  207 (343)
                             ...+...|.++++........          .......+..+++   .++.. .++.+.++|..+++.+..
T Consensus       264 r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         264 RPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             SCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence                   356888899999987765532          1222233333443   23333 788999999999887653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.32  E-value=0.00068  Score=58.18  Aligned_cols=271  Identities=14%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcce-eeEEeEE-ecCC----CCCeEEEEecCceEEEeeCCCeEEEEEcCCCeee
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTL-TLTQLFS-YPAH----LSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSL   75 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~~-~~~h----~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~   75 (343)
                      .|++++.++.|.-.|..+       ++.+ ++.+... ....    ...-..++..+..++.+..++.|.-.|..+++.+
T Consensus        68 ~vyv~t~~~~v~AlDa~t-------G~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~  140 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAAS-------GKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI  140 (560)
T ss_dssp             EEEEEEGGGEEEEEETTT-------CCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEeCCC-------CCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEE
Confidence            366777888888888877       3222 1110000 0000    0111123333667888999999999999999999


Q ss_pred             eEeccCCCCCeEEEE---EeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeec-----------------
Q 019326           76 GAIHHHESSSVTSLA---FYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVH-----------------  129 (343)
Q Consensus        76 ~~~~~~~~~~v~~l~---~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~-----------------  129 (343)
                      ..+.......-..+.   ..-++      .++.+..      .|.|.-+|.++++.+..+..-                 
T Consensus       141 w~~~~~~~~~~~~~~~~p~v~~~------~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  214 (560)
T d1kv9a2         141 WSQQTTDPAKPYSITGAPRVVKG------KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (560)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             eccCccCcccceeeeeeeeeecC------cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence            887643111111111   01122      4455443      367999999999998887521                 


Q ss_pred             -------------cccE-EEEEEecCCCEEEEEeC-------------------CCeEEEEEccCCceeEEEEcC-C---
Q 019326          130 -------------KKGV-NDLAVHHSGKLALTVGR-------------------DDCLAMVNLVRGRRSFYHKIG-K---  172 (343)
Q Consensus       130 -------------~~~v-~~i~~~~~~~~l~~~~~-------------------d~~i~~wd~~~~~~~~~~~~~-~---  172 (343)
                                   ...+ ..+++.+...+++.+..                   ...|...|+++++........ +   
T Consensus       215 ~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~w  294 (560)
T d1kv9a2         215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (560)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccc
Confidence                         0111 12455666655554331                   245777788999877655431 1   


Q ss_pred             ------cceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEecCCc--ce--------------------------
Q 019326          173 ------EASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCELDGKK--RI--------------------------  214 (343)
Q Consensus       173 ------~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--~i--------------------------  214 (343)
                            ....+.+..+++   .++.. .++.+.++|..+++++...+...  ..                          
T Consensus       295 d~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  374 (560)
T d1kv9a2         295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW  374 (560)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred             cccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeee
Confidence                  122223333333   23333 78889999999998876543100  00                          


Q ss_pred             ---------EEeeecC-CCeEEEEe------------------------------------CCCcEEEEECCCCceeEEe
Q 019326          215 ---------LCAAPGE-NGVLFTGG------------------------------------EDRSITAWDTNSGKVAYCI  248 (343)
Q Consensus       215 ---------~~~~~~~-~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~  248 (343)
                               ...++++ .++++...                                    ..|.|.-||+.+++.+.+.
T Consensus       375 p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~  454 (560)
T d1kv9a2         375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV  454 (560)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred             eccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeec
Confidence                     0111221 12232221                                    1256888999999998887


Q ss_pred             cccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccc
Q 019326          249 EDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIK  296 (343)
Q Consensus       249 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  296 (343)
                      +  ...+..+=.+...+.         ++++|+.||.++-+|.++++.
T Consensus       455 ~--~~~~~~gg~l~Tagg---------lVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         455 P--YPTHWNGGTLSTAGN---------LVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             E--ESSSCCCCEEEETTT---------EEEEECTTSEEEEEETTTCCE
T ss_pred             c--CCCCCCCceeEECCC---------EEEEECCCCcEEEEECCCCcE
Confidence            7  333333222333343         888999999999999999863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=0.00037  Score=53.63  Aligned_cols=233  Identities=13%  Similarity=0.033  Sum_probs=141.9

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec--CceEE-EeeCCCeEEEEEcCCCe----eeeEeccC
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS--GTAAA-SGGTDDTIHLYDLSTSS----SLGAIHHH   81 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~----~~~~~~~~   81 (343)
                      ...|+..++...       .   ...+  + .....+.+++|+  .+.|+ +=...+.|..-+++...    ....+...
T Consensus         9 ~~~I~~~~l~~~-------~---~~~~--~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           9 RHEVRKMTLDRS-------E---YTSL--I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (266)
T ss_dssp             BSSEEEEETTSC-------C---CEEE--E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             CCeEEEEECCCC-------c---ceee--e-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            346888887651       1   1222  1 244567789997  45544 43456677776665321    11222222


Q ss_pred             CCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEe--CCCeEEEEEc
Q 019326           82 ESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVG--RDDCLAMVNL  159 (343)
Q Consensus        82 ~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~i~~wd~  159 (343)
                       ...+..|++.+.+.    ++.++-...+.|.+.+++.......+.........++++|...+|+...  ..+.|.-.++
T Consensus        76 -~~~p~glAvD~~~~----~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          76 -IQAPDGLAVDWIHS----NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             -CSCCCEEEEETTTT----EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             -CCCcceEEEeeccc----eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence             45677888876651    4555656678999999987665555555556789999999665555543  3456777777


Q ss_pred             cCCceeEEEEc-CCcceEEEEeCCCCEEEEE--eCCcEEEEEcccceeEEEec---CCcceEEeeecCCCeEEEEeCCCc
Q 019326          160 VRGRRSFYHKI-GKEASLIKFDGSGEKFFMV--TEEKVGIHQAEDAKLLCELD---GKKRILCAAPGENGVLFTGGEDRS  233 (343)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~---~~~~i~~~~~~~~~~l~~~~~dg~  233 (343)
                      ........... -..+..+++++.++.++.+  ..+.|...++..........   .......+++..+.+.++-..++.
T Consensus       151 dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~  230 (266)
T d1ijqa1         151 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA  230 (266)
T ss_dssp             TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred             CCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCe
Confidence            65544333332 2557889999988888777  56788888886544332222   223456777765555556567788


Q ss_pred             EEEEECCCCceeEEecccccccEEEEE
Q 019326          234 ITAWDTNSGKVAYCIEDAHSARVKGIV  260 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~v~~~~  260 (343)
                      |...+..+++....+. .....+.++.
T Consensus       231 I~~~~~~~g~~~~~~~-~~~~~p~~i~  256 (266)
T d1ijqa1         231 IFSANRLTGSDVNLLA-ENLLSPEDMV  256 (266)
T ss_dssp             EEEEETTTCCCCEEEE-CSCSCCCCEE
T ss_pred             EEEEECCCCcceEEEE-cCCCCceEEE
Confidence            8888888877666655 3333334443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.15  E-value=0.0017  Score=55.80  Aligned_cols=189  Identities=8%  Similarity=0.068  Sum_probs=107.2

Q ss_pred             eeEEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecC-------C---CCCe-EEEEecCceEEEeeCCCeEEEEEcC
Q 019326            2 SLIAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPA-------H---LSPI-TTVAVSGTAAASGGTDDTIHLYDLS   70 (343)
Q Consensus         2 ~l~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-------h---~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~   70 (343)
                      .|++++.++.|.-+|.++       ++.     +.++..       +   ...+ ..+++....++.++.|+.+.-.|.+
T Consensus        79 ~vyv~t~~~~v~AlDa~T-------G~~-----~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~  146 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRT-------GNR-----IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAA  146 (573)
T ss_dssp             EEEEECGGGCEEEEETTT-------TEE-----EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCeEEEEeCCC-------CCe-----EEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccc
Confidence            366778888888888877       322     222110       0   0111 1234446677888889999999999


Q ss_pred             CCeeeeEeccC--CCCCeE--EEEEeCCCCCCCCceEEEeeC------CCeEEEEECCCcceeeeeeecc----------
Q 019326           71 TSSSLGAIHHH--ESSSVT--SLAFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVLLTSVKVHK----------  130 (343)
Q Consensus        71 ~~~~~~~~~~~--~~~~v~--~l~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~----------  130 (343)
                      +|+.+......  ....+.  .--....      ..+++++.      .|.|+.+|.++++.+..+....          
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~~------~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~  220 (573)
T d1kb0a2         147 TGKEVWHQNTFEGQKGSLTITGAPRVFK------GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDE  220 (573)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEET------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             cccceecccCccCCcceEEeecceEEEe------ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcc
Confidence            99988766432  011111  1001112      25555543      4689999999999988764211          


Q ss_pred             ---------------------ccE-EEEEEecCCCEEEEEeC-------------------CCeEEEEEccCCceeEEEE
Q 019326          131 ---------------------KGV-NDLAVHHSGKLALTVGR-------------------DDCLAMVNLVRGRRSFYHK  169 (343)
Q Consensus       131 ---------------------~~v-~~i~~~~~~~~l~~~~~-------------------d~~i~~wd~~~~~~~~~~~  169 (343)
                                           ..+ ...++.+....++....                   ...|...|+++++......
T Consensus       221 ~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q  300 (573)
T d1kb0a2         221 SMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ  300 (573)
T ss_dssp             HHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             cccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeeccc
Confidence                                 111 12455565555544331                   2346677888887765544


Q ss_pred             cC----------CcceEEEEeCCCC---EEEEE-eCCcEEEEEcccceeEEEe
Q 019326          170 IG----------KEASLIKFDGSGE---KFFMV-TEEKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       170 ~~----------~~~~~~~~~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~~  208 (343)
                      ..          .+........++.   .++.+ .++.+.++|..+++.+...
T Consensus       301 ~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~  353 (573)
T d1kb0a2         301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (573)
T ss_dssp             SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             ccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccc
Confidence            31          1122223333332   23333 7888999999999877644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=0.0022  Score=55.22  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CcEEEEEcccceeEEEecCCcceEEeeec-CCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCC
Q 019326          192 EKVGIHQAEDAKLLCELDGKKRILCAAPG-ENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKND  266 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~  266 (343)
                      +.+.-+|+.+++.+.+.....++..-... .++++++|+.||.++.+|.++|+.+.+++......-.-+.+..++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            45777888999988888754444322222 6778889999999999999999999988732222112245555553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.02  E-value=0.003  Score=54.44  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=92.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCC---CCCeEEE-EEeCCCCCCCCceEEEeeC------CCeEEEEECCCcce
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHE---SSSVTSL-AFYTPQNLSVPRNLFSTSA------DGFVSIFDADPFVL  122 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~l-~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~  122 (343)
                      .+++.++.|+.|.-.|.++++.+..+....   ...++.- .+. +      ..++.+..      .|.|+-+|..+++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~------~~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K------DKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T------TEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-C------CeEEEeeccccccccCceEEEECCCCcE
Confidence            468889999999999999999998875320   1111111 111 2      35666643      48999999999999


Q ss_pred             eeeeeecc-------------------------------------c-cEEEEEEecCCCEEEEEeC--------------
Q 019326          123 LTSVKVHK-------------------------------------K-GVNDLAVHHSGKLALTVGR--------------  150 (343)
Q Consensus       123 ~~~~~~~~-------------------------------------~-~v~~i~~~~~~~~l~~~~~--------------  150 (343)
                      +.++....                                     . .-..+++.+...+++.+..              
T Consensus       195 ~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n  274 (596)
T d1w6sa_         195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN  274 (596)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccc
Confidence            88765211                                     0 1123455666666655543              


Q ss_pred             --CCeEEEEEccCCceeEEEEcC-C---------cceEEEE-eCCCC---EEEEE-eCCcEEEEEcccceeEEE
Q 019326          151 --DDCLAMVNLVRGRRSFYHKIG-K---------EASLIKF-DGSGE---KFFMV-TEEKVGIHQAEDAKLLCE  207 (343)
Q Consensus       151 --d~~i~~wd~~~~~~~~~~~~~-~---------~~~~~~~-~~~~~---~~~~~-~~~~i~~~d~~~~~~~~~  207 (343)
                        ...+...|+++++....+... +         .+..+.. ..+++   .++.. .++.+.++|..+++++..
T Consensus       275 ~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence              345888899999987765542 1         1222222 23443   34444 678899999998887754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.00  E-value=0.00094  Score=51.38  Aligned_cols=92  Identities=10%  Similarity=-0.029  Sum_probs=63.4

Q ss_pred             EeCC--CCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeC-C-----CeEEEEEccCC
Q 019326           91 FYTP--QNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGR-D-----DCLAMVNLVRG  162 (343)
Q Consensus        91 ~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d-----~~i~~wd~~~~  162 (343)
                      .+|+  |     +.++..+ +|.|.+.|+.+++.. .+..+.+.+...+|+|||+.|+.... +     ..|.+++..++
T Consensus         6 ~sPdi~G-----~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           6 LNPDIHG-----DRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             EEEEEET-----TEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             cCCCCCC-----CEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            4677  7     5555443 457888999887754 55556778899999999998886542 1     24777787777


Q ss_pred             ceeEEEEcC-------CcceEEEEeCCCCEEEEE
Q 019326          163 RRSFYHKIG-------KEASLIKFDGSGEKFFMV  189 (343)
Q Consensus       163 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  189 (343)
                      +........       .......|+|+++.++..
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            654332211       234568899999999887

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=0.0064  Score=46.36  Aligned_cols=213  Identities=13%  Similarity=0.111  Sum_probs=130.5

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCC-cceeeeeeecc-
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADP-FVLLTSVKVHK-  130 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~-  130 (343)
                      +.||.-+ ..++.++|+++.+.++.+.-.  .+|.--.|-.+.      .|+-.+. ..|+-|+++. .++...+..|. 
T Consensus        75 ~IiALra-g~~LQiFnletK~klks~~~~--e~VvfWkWis~~------~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          75 KVIALKA-GKTLQIFNIEMKSKMKAHTMT--DDVTFWKWISLN------TVALVTD-NAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEEECS--SCCCEEEESSSS------EEEEECS-SEEEEEESSSSCCCEEEEECCGG
T ss_pred             cEEEEec-CCeEEEEehhHhhhhceEEcC--CCcEEEEecCCC------EEEEEcC-CceEEEcccCCCCchhhhhhccc
Confidence            3444333 568999999999999888866  577777887665      5655554 4799999943 34666666554 


Q ss_pred             ---ccEEEEEEecCCCEEEEEeC-------CCeEEEEEccCCceeEEEEcCCcceE-EEEeCCC-----CEEEEE----e
Q 019326          131 ---KGVNDLAVHHSGKLALTVGR-------DDCLAMVNLVRGRRSFYHKIGKEASL-IKFDGSG-----EKFFMV----T  190 (343)
Q Consensus       131 ---~~v~~i~~~~~~~~l~~~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~----~  190 (343)
                         ..|.....+++.++++..+-       .|.+.+|..+.+....   ..+...+ ..+-.+|     ..++.+    .
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~---ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---IEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE---ECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc---ccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence               36777888888888776552       3667888876654222   2222222 1111111     133333    2


Q ss_pred             CCcEEEEEcccce---e---EE--Eec-----CCcceEEeeecC-CCeEEEEeCCCcEEEEECCCCceeEEecccccccE
Q 019326          191 EEKVGIHQAEDAK---L---LC--ELD-----GKKRILCAAPGE-NGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARV  256 (343)
Q Consensus       191 ~~~i~~~d~~~~~---~---~~--~~~-----~~~~i~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v  256 (343)
                      .+++.+.++....   .   .+  .+.     ...-..++..++ -+.++.-+.-|.|++||+.++.++..-+ -....|
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR-Is~~~i  300 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETI  300 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee-cCCCce
Confidence            3567777765421   1   11  111     122245566653 5688888999999999999999998877 556666


Q ss_pred             EEEEEEecCCCCCCCCCCeEEEEEcCCCcEEE
Q 019326          257 KGIVVLTKNDGGSTAENPYLVASASSDGVICV  288 (343)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  288 (343)
                      -.-+-.....         =+++...+|.|.-
T Consensus       301 F~~a~~~~~~---------Gi~~VNr~GqVl~  323 (327)
T d1utca2         301 FVTAPHEATA---------GIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEETTTT---------EEEEEETTSEEEE
T ss_pred             EEeccCCCCc---------eEEEECCCCeEEE
Confidence            6444333322         3555556776543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.0064  Score=46.30  Aligned_cols=217  Identities=10%  Similarity=0.061  Sum_probs=131.6

Q ss_pred             CeEEEEEcCCCeee-----eEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEE
Q 019326           62 DTIHLYDLSTSSSL-----GAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDL  136 (343)
Q Consensus        62 g~i~iwd~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i  136 (343)
                      +.|+-.+++.....     ..+..+ ...+..|+|.+..+    ..+++-..++.|+..+++.......+......+.++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~-~~~~~~ld~D~~~~----~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~i   84 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIP-AKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEE-EEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             CeEEEEECCCccccccccccccccC-CCcEEEEEEEeCCC----EEEEEECCCCeEEEEEcccCCcEEEEEeccccccEE
Confidence            56777777543211     123333 34577899988772    344444567889988887655444443333578899


Q ss_pred             EEecCCCEEE-EEeCCCeEEEEEccCCceeEEEEcC-CcceEEEEeCCCCEEEEE--eCCcEEEE--EcccceeEEEec-
Q 019326          137 AVHHSGKLAL-TVGRDDCLAMVNLVRGRRSFYHKIG-KEASLIKFDGSGEKFFMV--TEEKVGIH--QAEDAKLLCELD-  209 (343)
Q Consensus       137 ~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~i~~~--d~~~~~~~~~~~-  209 (343)
                      ++..-+..|. +-...+.|.+.++............ ..+..++++|...+++..  ..+..+++  ++.......... 
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~  164 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee
Confidence            9987665555 5556789999998766543333332 567889999988877766  22333344  444333222222 


Q ss_pred             CCcceEEeeec-CCCeE-EEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          210 GKKRILCAAPG-ENGVL-FTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       210 ~~~~i~~~~~~-~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      .-.....++++ .++.| ++-...+.|...|+........+. +.. ...+|++.. +.         +..+-...+.|.
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~~-~P~~lav~~-~~---------lYwtd~~~~~I~  232 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSYG-KN---------LYYTDWKTNSVI  232 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEET-TE---------EEEEETTTTEEE
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CCC-CcEEEEEEC-CE---------EEEEECCCCEEE
Confidence            33456778876 34445 554567889999987544333333 322 346788763 21         455555678888


Q ss_pred             EEeccCcc
Q 019326          288 VWDVRMAI  295 (343)
Q Consensus       288 vwd~~~~~  295 (343)
                      ..|..++.
T Consensus       233 ~~~~~~g~  240 (263)
T d1npea_         233 AMDLAISK  240 (263)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCc
Confidence            88888764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=0.015  Score=49.87  Aligned_cols=55  Identities=25%  Similarity=0.296  Sum_probs=39.3

Q ss_pred             CcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCcccc
Q 019326          232 RSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKE  297 (343)
Q Consensus       232 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  297 (343)
                      |.|.-+|+.+++.+.+..  ...++.+=.++..+.         ++++|+.||.++-+|.++++..
T Consensus       466 G~l~AiD~~TG~i~W~~~--~~~p~~~g~lstagg---------lVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHK--EHLPLWAGVLATAGN---------LVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEE--ESSCCCSCCEEETTT---------EEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecC--CCCCCccceeEEcCC---------eEEEeCCCCeEEEEECCCCcEe
Confidence            678888999999888877  223332222233333         8888999999999999999733

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.34  E-value=0.025  Score=45.46  Aligned_cols=180  Identities=12%  Similarity=0.151  Sum_probs=111.9

Q ss_pred             EEeccCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec----CceEEEeeCC------------------
Q 019326            4 IAGSYEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS----GTAAASGGTD------------------   61 (343)
Q Consensus         4 ~~g~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~d------------------   61 (343)
                      +.-..++.|.+.|+..          ++...+..++ ....+..++..    ..+++.++.+                  
T Consensus       104 VNDkan~RVAvIdl~~----------fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2         104 MNDKANTRVARVRCDV----------MKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEETTTTEEEEEETTT----------TEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             EEcCCCceEEEEECcc----------eeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            4445677888888776          2333444443 34455666553    4566665553                  


Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCC---------------eEEEEEC---------
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADG---------------FVSIFDA---------  117 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg---------------~i~iwd~---------  117 (343)
                      +.+.+.|.++.+....+.-.  .....+.+++++     +++++.+.+.               .+.+++.         
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dG-----K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVS--GNLDNCDADYEG-----KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEES--SCCCCEEECSSS-----SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             eEEEEEecCCceEEEEeeeC--CChhccccCCCC-----CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence            23667899988888777654  456789999999     7877776531               1333332         


Q ss_pred             --------------CCc---ceeeeeeeccccEEEEEEecCCCEEEEEeC-CCeEEEEEccCCce------------eEE
Q 019326          118 --------------DPF---VLLTSVKVHKKGVNDLAVHHSGKLALTVGR-DDCLAMVNLVRGRR------------SFY  167 (343)
Q Consensus       118 --------------~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~i~~wd~~~~~~------------~~~  167 (343)
                                    +..   ..+..+... .....+.++|||+++++++. +.++.++|+++-..            ...
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                          211   111222222 23456889999998887765 89999999974221            122


Q ss_pred             EEcCCcceEEEEeCCCCEEEEE-eCCcEEEEEcccc
Q 019326          168 HKIGKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDA  202 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~  202 (343)
                      ..+.-.....+|+..|....+. -|..+.-|++...
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            2334445668888888655555 8999999998654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.20  E-value=0.036  Score=44.42  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=67.5

Q ss_pred             CceEEEeeCCC-----------eEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC-CeEEEEEC
Q 019326           52 GTAAASGGTDD-----------TIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD-GFVSIFDA  117 (343)
Q Consensus        52 ~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iwd~  117 (343)
                      ++.++.|+.+.           .+.+||..+++-..  .....+.......++.+++     ++++.|+.+ ..+.+||.
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----QIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----CEEEECSSSTTCEEEEEG
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-----cEEEeecCCCcceeEecC
Confidence            77777777431           37789999875432  2222213334466788888     677777665 58999998


Q ss_pred             CCcceee--eeeeccccEEEEEEecCCCEEEEEeCC------CeEEEEEccCCce
Q 019326          118 DPFVLLT--SVKVHKKGVNDLAVHHSGKLALTVGRD------DCLAMVNLVRGRR  164 (343)
Q Consensus       118 ~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d------~~i~~wd~~~~~~  164 (343)
                      .+..-..  .+... ..-...+..+++++++.++.+      ..+.+||..+.+-
T Consensus       106 ~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         106 SSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             GGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            7644321  11111 122356677889999888753      3588999987753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.18  E-value=0.038  Score=44.31  Aligned_cols=108  Identities=15%  Similarity=0.066  Sum_probs=62.5

Q ss_pred             CceEEEeeCC-CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC------CeEEEEECCCcceee
Q 019326           52 GTAAASGGTD-DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD------GFVSIFDADPFVLLT  124 (343)
Q Consensus        52 ~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~  124 (343)
                      +.+++.|+.+ ..+.+||..+..-...-.......-.+.+..+++     +.++.|+.+      ..+.+||..+.+-..
T Consensus        87 g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-----~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~  161 (387)
T d1k3ia3          87 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-----RVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  161 (387)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-----CEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC-----ceeeeccccccccccceeeeecCCCCceee
Confidence            7777777655 5799999988754332211111223456667777     677877753      368999987643211


Q ss_pred             --eee-------ecc-----ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCce
Q 019326          125 --SVK-------VHK-----KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRR  164 (343)
Q Consensus       125 --~~~-------~~~-----~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~  164 (343)
                        ...       .+.     ..-..+...++++.++.++.++.+..++..+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         162 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence              100       000     0011123345677777777777777777776654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.066  Score=40.54  Aligned_cols=217  Identities=12%  Similarity=0.080  Sum_probs=129.9

Q ss_pred             CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEE-EeeCCCeEEEEECCCcc---eeee-eeeccccEEEE
Q 019326           62 DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLF-STSADGFVSIFDADPFV---LLTS-VKVHKKGVNDL  136 (343)
Q Consensus        62 g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~---~~~~-~~~~~~~v~~i  136 (343)
                      ..|+..++++.+....+. . ...+.++.|.+..     +.|. +=...+.|.-.+++...   .... +......+..+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~-~~~~~~id~d~~~-----~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-N-LRNVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-S-CSSEEEEEEETTT-----TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             CeEEEEECCCCcceeeeC-C-CCceEEEEEEeCC-----CEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceE
Confidence            358888998765544444 3 4678899999877     4444 44456777777664321   1122 22223456788


Q ss_pred             EEecCCCEEEE-EeCCCeEEEEEccCCceeEEEEc-CCcceEEEEeCCCCEEEEE-e--CCcEEEEEcccceeEEEec-C
Q 019326          137 AVHHSGKLALT-VGRDDCLAMVNLVRGRRSFYHKI-GKEASLIKFDGSGEKFFMV-T--EEKVGIHQAEDAKLLCELD-G  210 (343)
Q Consensus       137 ~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~--~~~i~~~d~~~~~~~~~~~-~  210 (343)
                      ++.+.+..|.. -...+.|.+.++........... ...+..++++|...+++.. .  .+.|...++.......... .
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~  162 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc
Confidence            99876554544 45668899999987665443333 3668889999977766666 2  3456666665443333333 3


Q ss_pred             CcceEEeeecC-CC-eEEEEeCCCcEEEEECCCCceeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEE
Q 019326          211 KKRILCAAPGE-NG-VLFTGGEDRSITAWDTNSGKVAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVIC  287 (343)
Q Consensus       211 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  287 (343)
                      -.....++++. ++ +.++-...+.|...++........... .......+|++..+ .         +..+-..++.|.
T Consensus       163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~-~---------ly~td~~~~~I~  232 (266)
T d1ijqa1         163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K---------VFWTDIINEAIF  232 (266)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-E---------EEEEETTTTEEE
T ss_pred             cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECC-E---------EEEEECCCCeEE
Confidence            34567777763 44 445556678899999865433222221 22334667887743 1         555556778888


Q ss_pred             EEeccCcc
Q 019326          288 VWDVRMAI  295 (343)
Q Consensus       288 vwd~~~~~  295 (343)
                      ..+..++.
T Consensus       233 ~~~~~~g~  240 (266)
T d1ijqa1         233 SANRLTGS  240 (266)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            77776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.67  E-value=0.099  Score=41.13  Aligned_cols=186  Identities=13%  Similarity=0.201  Sum_probs=115.0

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEec----CC--CEEEEEe-C-C--CeEEEEEccCCc-eeEEEE
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHH----SG--KLALTVG-R-D--DCLAMVNLVRGR-RSFYHK  169 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~----~~--~~l~~~~-~-d--~~i~~wd~~~~~-~~~~~~  169 (343)
                      .+++.....+-|++||++ |+.++.+.  .+.++.+..-.    ++  .-+++++ + +  .+|.+|.+.... .+....
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            466766777779999996 56666654  35566665442    22  2344444 2 2  368888775322 222211


Q ss_pred             c--------CCcceEEEE--eCC-CCE-EEEE-eCCcEEEEEccc-------ceeEEEecCCcceEEeeecC-CCeEEEE
Q 019326          170 I--------GKEASLIKF--DGS-GEK-FFMV-TEEKVGIHQAED-------AKLLCELDGKKRILCAAPGE-NGVLFTG  228 (343)
Q Consensus       170 ~--------~~~~~~~~~--~~~-~~~-~~~~-~~~~i~~~d~~~-------~~~~~~~~~~~~i~~~~~~~-~~~l~~~  228 (343)
                      .        ...+..+|+  ++. +.. +++. .++.+..|.+..       .+.++.+.....+..+.+.+ .+.|+.+
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEe
Confidence            1        124556666  554 444 3344 788888887632       34666777778888888875 4688888


Q ss_pred             eCCCcEEEEECCC-----CceeEEecc-cccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCc
Q 019326          229 GEDRSITAWDTNS-----GKVAYCIED-AHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMA  294 (343)
Q Consensus       229 ~~dg~i~i~d~~~-----~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  294 (343)
                      -++.-|..++...     +..+..... .....+.+|++.....     .+|++|+|.-.|++..|||....
T Consensus       198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~-----~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD-----GKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG-----GCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC-----CCeEEEEEcCCCCeEEEEecCCC
Confidence            8887776666542     222323321 2456888998876542     24567777778899999999864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.14  E-value=0.21  Score=39.20  Aligned_cols=190  Identities=14%  Similarity=0.202  Sum_probs=114.0

Q ss_pred             ceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeC----CCCCCCCceEEEeeC-C---CeEEEEECCC-ccee
Q 019326           53 TAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYT----PQNLSVPRNLFSTSA-D---GFVSIFDADP-FVLL  123 (343)
Q Consensus        53 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~~~~l~s~~~-d---g~i~iwd~~~-~~~~  123 (343)
                      .+++.....+-|.+||++ |+.+..+.   .+.++.+....    .+.   ...++.++. +   .+|.+|.+.. ...+
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~---~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGK---KVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTE---EEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCc---ceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            456666666669999996 77777664   35666665542    110   023444442 2   3677887742 2223


Q ss_pred             eeeeec-------cccEEEEEE--ecC-CC-EEEEEeCCCeEEEEEccC---C----ceeEEEEcCCcceEEEEeCCCCE
Q 019326          124 TSVKVH-------KKGVNDLAV--HHS-GK-LALTVGRDDCLAMVNLVR---G----RRSFYHKIGKEASLIKFDGSGEK  185 (343)
Q Consensus       124 ~~~~~~-------~~~v~~i~~--~~~-~~-~l~~~~~d~~i~~wd~~~---~----~~~~~~~~~~~~~~~~~~~~~~~  185 (343)
                      ..+...       ...+..+|+  ++. +. ++++...+|.+..|.+..   +    +.+..+..+.++..|.++.....
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS  193 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence            333211       124667776  554 43 567777889999887742   2    24456677888999999999999


Q ss_pred             EEEE-eCCcEEEEEccc-----ceeEEEec---CCcceEEeeec---C-CCeE-EEEeCCCcEEEEECCCC-ceeEEec
Q 019326          186 FFMV-TEEKVGIHQAED-----AKLLCELD---GKKRILCAAPG---E-NGVL-FTGGEDRSITAWDTNSG-KVAYCIE  249 (343)
Q Consensus       186 ~~~~-~~~~i~~~d~~~-----~~~~~~~~---~~~~i~~~~~~---~-~~~l-~~~~~dg~i~i~d~~~~-~~~~~~~  249 (343)
                      |+.+ .+..+..++...     ...+....   ....+..++.-   + ..+| ++.-.+++..+||.... +.+..+.
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            9999 666666665542     12222221   23445555543   2 2344 44456788999998764 5565554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.31  Score=36.77  Aligned_cols=211  Identities=11%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCeeee--EeccCCCCCeEEEEEeCCCCCCCCceEEEeeC---------CCeEEEEECCCccee--eeeee
Q 019326           62 DTIHLYDLSTSSSLG--AIHHHESSSVTSLAFYTPQNLSVPRNLFSTSA---------DGFVSIFDADPFVLL--TSVKV  128 (343)
Q Consensus        62 g~i~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~--~~~~~  128 (343)
                      ..+.+||..+++-..  .+... ...- ++... ++     ..++.|+.         -..+.+||..+.+..  ..+..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~-R~~~-~~~~~-~~-----~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~   90 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVP-RSGL-AGCVV-GG-----LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV   90 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC-CBSC-EEEEE-TT-----EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS
T ss_pred             ceEEEEECCCCeEEECCCCCCc-ccee-EEEEE-CC-----EEEEEeCcccCCCCccccchhhhcccccccccccccccc
Confidence            358899999875332  23222 2222 22222 33     46666663         135678887654322  11111


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCe-----EEEEEccCCceeEEEEcCCc--ceEEEEeCCCCEEEEE-e-----CCcEE
Q 019326          129 HKKGVNDLAVHHSGKLALTVGRDDC-----LAMVNLVRGRRSFYHKIGKE--ASLIKFDGSGEKFFMV-T-----EEKVG  195 (343)
Q Consensus       129 ~~~~v~~i~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-----~~~i~  195 (343)
                      ....-.+.  ..+++.++.++.++.     ...+|..+............  -...... ++..++.+ .     ...+.
T Consensus        91 ~r~~~~~~--~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          91 PRNRIGVG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             CCBTCEEE--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             eecceecc--ccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEE
Confidence            11111111  224555555544332     34466655543222211111  1122222 33333333 2     24467


Q ss_pred             EEEcccceeEEEec--CCcceEEeeecCCCeEEEEeCC-----CcEEEEECCCCceeEEecccccccE-EEEEEEecCCC
Q 019326          196 IHQAEDAKLLCELD--GKKRILCAAPGENGVLFTGGED-----RSITAWDTNSGKVAYCIEDAHSARV-KGIVVLTKNDG  267 (343)
Q Consensus       196 ~~d~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~  267 (343)
                      .||..+.+....-.  ......+.....+.+++.|+.+     .....+|..+.+... +........ .+++.. ++. 
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~r~~~~~~~~-~~~-  244 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGITVH-QGR-  244 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTE-
T ss_pred             EeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeec-ccCccCcccceEEEEE-CCE-
Confidence            78877655433222  1111223333355666666544     346777877654332 220111111 123222 333 


Q ss_pred             CCCCCCCeEEEEEcCCC-----cEEEEeccCc
Q 019326          268 GSTAENPYLVASASSDG-----VICVWDVRMA  294 (343)
Q Consensus       268 ~~~~~~~~~l~s~~~dg-----~i~vwd~~~~  294 (343)
                              +++.|+.++     .|.+||+.+.
T Consensus       245 --------l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         245 --------IYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             --------EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             --------EEEEecCCCCeecceEEEEECCCC
Confidence                    777776554     3778888865

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.57  E-value=0.32  Score=36.90  Aligned_cols=207  Identities=8%  Similarity=0.092  Sum_probs=123.2

Q ss_pred             CCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEec-CceEEEeeCCCeEEEEEcCCC-eeeeEeccCC---C
Q 019326            9 EKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVS-GTAAASGGTDDTIHLYDLSTS-SSLGAIHHHE---S   83 (343)
Q Consensus         9 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~   83 (343)
                      ...+.+||++.            .+.+..+. -..+|.--.|- .+.|+-.+. ..|.-|+++.. .+.+.+..|.   .
T Consensus        82 g~~LQiFnlet------------K~klks~~-~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~  147 (327)
T d1utca2          82 GKTLQIFNIEM------------KSKMKAHT-MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAG  147 (327)
T ss_dssp             TTEEEEEETTT------------TEEEEEEE-CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTT
T ss_pred             CCeEEEEehhH------------hhhhceEE-cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccC
Confidence            45788888876            33333333 24567666776 666666654 56999999643 4555555442   3


Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeC-------CCeEEEEECCCcceeeeeeeccccEEEEEEecCC---CEEEEE---eC
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSA-------DGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG---KLALTV---GR  150 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~---~~  150 (343)
                      ..|..-..+++.     ++++..+-       .|.+.+|..+. +.-+.+++|...-..+.+..+.   ..++.+   ..
T Consensus       148 ~QIInY~~d~~~-----kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         148 CQIINYRTDAKQ-----KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             CEEEEEEECTTS-----CEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ceEEEEEECCCC-----CEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            566666777777     55554332       36788999876 4566777776544444332211   222222   22


Q ss_pred             CCeEEEEEccCCc---ee---EEEE--c-----CCcceEEEEeCCCCEEEEE-eCCcEEEEEcccceeEEEec-CCcceE
Q 019326          151 DDCLAMVNLVRGR---RS---FYHK--I-----GKEASLIKFDGSGEKFFMV-TEEKVGIHQAEDAKLLCELD-GKKRIL  215 (343)
Q Consensus       151 d~~i~~wd~~~~~---~~---~~~~--~-----~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~i~  215 (343)
                      .+.+.+.++....   ..   ....  .     .+-+-.+..++.-..++.. .-|.+.+||++++.++..-+ ...+|.
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            3678888886532   11   1111  1     2345678888877777777 89999999999999988766 445554


Q ss_pred             Eeeec-CCCeEEEEeCCCcEE
Q 019326          216 CAAPG-ENGVLFTGGEDRSIT  235 (343)
Q Consensus       216 ~~~~~-~~~~l~~~~~dg~i~  235 (343)
                      ..+.. ...=+++-..+|.|.
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEE
T ss_pred             EeccCCCCceEEEECCCCeEE
Confidence            44433 223344444666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.17  E-value=0.52  Score=36.83  Aligned_cols=165  Identities=14%  Similarity=0.082  Sum_probs=92.0

Q ss_pred             CCeEEEEEcCCCeeee-Ee--ccCC----CCCeEEEEE--eCCCCCCCCceEEEee---CCCeEEEEECCCcc--e--ee
Q 019326           61 DDTIHLYDLSTSSSLG-AI--HHHE----SSSVTSLAF--YTPQNLSVPRNLFSTS---ADGFVSIFDADPFV--L--LT  124 (343)
Q Consensus        61 dg~i~iwd~~~~~~~~-~~--~~~~----~~~v~~l~~--~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~--~--~~  124 (343)
                      .|.|.++|+++.+... .+  .+..    .-....+..  .+++.    -+|++..   ...+|.+|++....  .  +.
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~----~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~  142 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT----VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  142 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCC----EEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCc----EEEEEEeccCCCceeEEEEEeCCCCeEEEEe
Confidence            4889999987653221 11  1110    012344443  23331    2454443   35678888874322  1  11


Q ss_pred             eeee-ccccEEEEEEecCCCEEEEEeC---------------CCeEEEEEccCCceeEEEEcCCcceEEEEeCCCCEEEE
Q 019326          125 SVKV-HKKGVNDLAVHHSGKLALTVGR---------------DDCLAMVNLVRGRRSFYHKIGKEASLIKFDGSGEKFFM  188 (343)
Q Consensus       125 ~~~~-~~~~v~~i~~~~~~~~l~~~~~---------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (343)
                      ++.. .....+++++..++..++|-..               -+...+|....++.......-...+.++++|+++.+++
T Consensus       143 ~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyV  222 (340)
T d1v04a_         143 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYI  222 (340)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             ecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEE
Confidence            2221 1235789999988888877321               12334455444444333333467889999999999988


Q ss_pred             E--eCCcEEEEEcccceeE---EEecCCcceEEeeec-CCCeEEEEe
Q 019326          189 V--TEEKVGIHQAEDAKLL---CELDGKKRILCAAPG-ENGVLFTGG  229 (343)
Q Consensus       189 ~--~~~~i~~~d~~~~~~~---~~~~~~~~i~~~~~~-~~~~l~~~~  229 (343)
                      +  ..+.|..|++......   ..+.-....-.+.+. .++.++++.
T Consensus       223 a~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         223 AELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            8  7888999998754322   222345556667764 344455544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.69  Score=36.62  Aligned_cols=97  Identities=10%  Similarity=0.033  Sum_probs=65.4

Q ss_pred             CeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCccee
Q 019326           44 PITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLL  123 (343)
Q Consensus        44 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  123 (343)
                      .|..++|+++.|+... ++.+..++...-........- ..++..+.++|..       ++....++.+.++++..++..
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~p~~-------~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEE
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccc-cccccceecCCce-------eEEEecCCCEEEEEeccCccc
Confidence            6899999977766654 456888887765444444444 5678888888754       667777899999999776533


Q ss_pred             eeee-----eccccEEEEEEecCCCEEEEEe
Q 019326          124 TSVK-----VHKKGVNDLAVHHSGKLALTVG  149 (343)
Q Consensus       124 ~~~~-----~~~~~v~~i~~~~~~~~l~~~~  149 (343)
                      ....     .-.+.+.+++|++.+..++++.
T Consensus       159 ~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         159 QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             cccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            2211     1234567777777777776653

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.36  E-value=0.7  Score=34.63  Aligned_cols=221  Identities=14%  Similarity=0.050  Sum_probs=109.0

Q ss_pred             CCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcc
Q 019326           42 LSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFV  121 (343)
Q Consensus        42 ~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  121 (343)
                      ...|..|+-.....+.-. ||.|..|-....-.+..-... ...|..+..-...      .++ - .|+.+..|.....-
T Consensus        25 ~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~-~~~v~~v~~G~~~------~~a-l-~dg~v~~wG~~~~g   94 (273)
T d1jtdb_          25 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT-QSGVDAIAAGNYH------SLA-L-KDGEVIAWGGNEDG   94 (273)
T ss_dssp             SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG-GSCCCEEEECSSE------EEE-E-ETTEEEEEECCTTS
T ss_pred             CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc-cccceEEecCCCc------eee-e-eeeeeeccCCCcce
Confidence            345888877644444444 899999976654333222222 3456666543221      233 2 48999999864321


Q ss_pred             eeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE-EEcCCcceEEEEeCCCCEEEEEeCCcEEEEEcc
Q 019326          122 LLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY-HKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAE  200 (343)
Q Consensus       122 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  200 (343)
                      ....-......+..++....  ..+. -.|+.+..|.-........ ......+..++  .....++...++.+..|-..
T Consensus        95 q~~~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~g~~~~~G~~  169 (273)
T d1jtdb_          95 QTTVPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALD--GGVYTALAVKNGGVIAWGDN  169 (273)
T ss_dssp             TTCCCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEE--ECSSEEEEEETTEEEEEECC
T ss_pred             eeccccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEe--ccceeeeeecccceeEeecc
Confidence            11111111223444444433  2222 2478888887443221111 11112233322  22333444477888888654


Q ss_pred             ccee-EEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE
Q 019326          201 DAKL-LCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS  279 (343)
Q Consensus       201 ~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  279 (343)
                      .... .........|..++......++.  .||.|+.|=....-.+..-. .....|..|+.....          .++.
T Consensus       170 ~~g~~~~~~~~~~~v~~Is~G~~h~~~l--~dG~v~~WG~n~~Gql~~~~-~~~~~v~~I~~G~~~----------~~~l  236 (273)
T d1jtdb_         170 YFGQTTVPAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWY----------SLAL  236 (273)
T ss_dssp             TTSTTSCCGGGSSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSC----------EEEE
T ss_pred             cCCcccccccccCCccceeccceeeEEE--ecCcEEEcCCCCCCccCCCc-cCCCCcEEEEeCcce----------EEEE
Confidence            3221 12222445677777644333333  37999999653321111111 233456666543332          3443


Q ss_pred             EcCCCcEEEEecc
Q 019326          280 ASSDGVICVWDVR  292 (343)
Q Consensus       280 ~~~dg~i~vwd~~  292 (343)
                        .||.|..|=-.
T Consensus       237 --~~g~v~~WG~~  247 (273)
T d1jtdb_         237 --KNGKVIAWGSS  247 (273)
T ss_dssp             --ETTEEEEESTT
T ss_pred             --ECCEEEEECCC
Confidence              38999999544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.79  Score=34.33  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             CCEEEEEeCC-----CeEEEEEccCCceeEEEEcCC--cceEEEEeCCCCEEEEE-eC-----CcEEEEEcccceeEEEe
Q 019326          142 GKLALTVGRD-----DCLAMVNLVRGRRSFYHKIGK--EASLIKFDGSGEKFFMV-TE-----EKVGIHQAEDAKLLCEL  208 (343)
Q Consensus       142 ~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-----~~i~~~d~~~~~~~~~~  208 (343)
                      +..++.++.+     ..+..||..+.+.........  ........ .+..++.+ .+     .....+|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeeccc
Confidence            3455555442     446778877665332222211  11222222 23333333 22     34566776665443322


Q ss_pred             cCCc--ceEEeeecCCCeEEEEeCCC-----cEEEEECCCCc
Q 019326          209 DGKK--RILCAAPGENGVLFTGGEDR-----SITAWDTNSGK  243 (343)
Q Consensus       209 ~~~~--~i~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  243 (343)
                      ....  .-.+++..++++++.|+.++     .|.+||+.+.+
T Consensus       228 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2111  11233333677777776544     37889988653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=1.1  Score=35.36  Aligned_cols=172  Identities=9%  Similarity=0.030  Sum_probs=96.5

Q ss_pred             CeEEEEec--CceEEEeeCCCeEEEEEcCCC---------eeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCCCeE
Q 019326           44 PITTVAVS--GTAAASGGTDDTIHLYDLSTS---------SSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSADGFV  112 (343)
Q Consensus        44 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i  112 (343)
                      ...-++.+  ..+++.|+.++ ++|-.++.-         ......+.. -..|..++|+.+       .|+.. .++.+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~d-------~l~v~-~~~~l  107 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHGD-------QVLVS-TRNAL  107 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEETT-------EEEEE-ESSEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeCC-------EEEEE-eCCCE
Confidence            45556666  45677777765 667664311         001111112 246889999744       34443 45568


Q ss_pred             EEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEE------EEcCCcceEEEEeCCCCEE
Q 019326          113 SIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFY------HKIGKEASLIKFDGSGEKF  186 (343)
Q Consensus       113 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  186 (343)
                      ..++...-...........++..+.++|.  .++....++.+.++++..++....      ........+++|++.+.++
T Consensus       108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         108 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            88887664444444444567888888875  567777889999999988764322      2234556777777777777


Q ss_pred             EEEeCCcEEEE-EcccceeEEE-ecCCcceEEeeecCCCeEEE
Q 019326          187 FMVTEEKVGIH-QAEDAKLLCE-LDGKKRILCAAPGENGVLFT  227 (343)
Q Consensus       187 ~~~~~~~i~~~-d~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~  227 (343)
                      +++.++...+. ++.....+.. ......+.++.|-....+++
T Consensus       186 v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         186 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             EEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEE
Confidence            66633322211 1111000000 01345678888875554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.94  E-value=1.5  Score=33.98  Aligned_cols=57  Identities=12%  Similarity=0.122  Sum_probs=34.6

Q ss_pred             ccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccCCCcccccccccceeEEEcCC
Q 019326          252 HSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEKPLPLAEAKTNSRLTCLAGSS  318 (343)
Q Consensus       252 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  318 (343)
                      .-...++|+++++++        .++++-+..++|++|++.......  ...........-.+.+.+
T Consensus       204 ~l~~pNGI~~s~d~~--------~lyVa~t~~~~i~~y~~~~~~~l~--~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         204 GFDFANGINISPDGK--------YVYIAELLAHKIHVYEKHANWTLT--PLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             EESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSCEE--EEEEEECSSEEEEEEECT
T ss_pred             CCCccceeEECCCCC--------EEEEEeCCCCeEEEEEeCCCcccc--eEEEecCCCCCCccEEec
Confidence            345678999998876        255666778899999997542211  112223334455566543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.77  E-value=2.4  Score=31.54  Aligned_cols=204  Identities=12%  Similarity=0.025  Sum_probs=95.3

Q ss_pred             cCCeEEEEEeecCCCCCCCCcceeeEEeEEecCCCCCeEEEEecCceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeE
Q 019326            8 YEKFIWGYKLKPSNHYSSDQKTLTLTQLFSYPAHLSPITTVAVSGTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVT   87 (343)
Q Consensus         8 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~   87 (343)
                      .||.|+.|-.......   +         .-......|..++.-....+. -.||.+..|.....-........ ...+.
T Consensus        42 ~dG~v~~wG~N~~GQl---G---------~~~~~~~~v~~v~~G~~~~~a-l~dg~v~~wG~~~~gq~~~~~~~-~~~~~  107 (273)
T d1jtdb_          42 KGGKVLGWGANLNGQL---T---------MPAATQSGVDAIAAGNYHSLA-LKDGEVIAWGGNEDGQTTVPAEA-RSGVD  107 (273)
T ss_dssp             ETTEEEEEECCTTSTT---S---------CCGGGGSCCCEEEECSSEEEE-EETTEEEEEECCTTSTTCCCGGG-GSSCC
T ss_pred             ECCEEEEEeCCCCCce---e---------eeecccccceEEecCCCceee-eeeeeeeccCCCcceeecccccc-cccee
Confidence            3788888876542110   0         001122345555544332222 24899999976432222111111 23455


Q ss_pred             EEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCCCEEEEEeCCCeEEEEEccCCcee-E
Q 019326           88 SLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRS-F  166 (343)
Q Consensus        88 ~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~  166 (343)
                      .++.....       .+. -.|+.+..|.................|..++-.  ...+ ....++.++.|-....... .
T Consensus       108 ~i~~~~~~-------~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~~~~~g~~~~~G~~~~g~~~~  176 (273)
T d1jtdb_         108 AIAAGAWA-------SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTA-LAVKNGGVIAWGDNYFGQTTV  176 (273)
T ss_dssp             EEEEETTE-------EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEE-EEEETTEEEEEECCTTSTTSC
T ss_pred             EEeeeccc-------ccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceee-eeecccceeEeecccCCcccc
Confidence            55544332       222 358999999754322211111122344444432  1222 3334788888865433221 1


Q ss_pred             EEEcCCcceEEEEeCCCCEEEEEeCCcEEEEEccc-ceeEEEecCCcceEEeeecCCCeEEEEeCCCcEEEEECC
Q 019326          167 YHKIGKEASLIKFDGSGEKFFMVTEEKVGIHQAED-AKLLCELDGKKRILCAAPGENGVLFTGGEDRSITAWDTN  240 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~  240 (343)
                      .......+..++.  .....+...|+.++.|=... ++.-........|..++......++.  .||.|..|-..
T Consensus       177 ~~~~~~~v~~Is~--G~~h~~~l~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         177 PAEAQSGVDDVAG--GIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             CGGGSSSEEEEEE--CSSEEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--ETTEEEEESTT
T ss_pred             cccccCCccceec--cceeeEEEecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcceEEEE--ECCEEEEECCC
Confidence            1122334444443  33343333688888885432 22111112223455666544444443  48999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.02  E-value=4  Score=32.98  Aligned_cols=103  Identities=9%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEeeCCCeEEEEECCCcceeeeee--------eccccEEEEEEecC---CCEEEEEeC--
Q 019326           84 SSVTSLAFYTPQNLSVPRNLFSTSADGFVSIFDADPFVLLTSVK--------VHKKGVNDLAVHHS---GKLALTVGR--  150 (343)
Q Consensus        84 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~i~~~~~---~~~l~~~~~--  150 (343)
                      ...++|+|.|++     ++|++--..|.|++++..+++......        .-......|+|+|+   ..++.....  
T Consensus        27 ~~P~~la~~pdg-----~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~  101 (450)
T d1crua_          27 NKPHALLWGPDN-----QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (450)
T ss_dssp             SSEEEEEECTTS-----CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCceEEEEeCCC-----eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecC
Confidence            567899999999     566655457999999887765332221        11246789999995   234433211  


Q ss_pred             -----C----C--eEEEEEccCCcee------EEEE----cCCcceEEEEeCCCCEEEEEeC
Q 019326          151 -----D----D--CLAMVNLVRGRRS------FYHK----IGKEASLIKFDGSGEKFFMVTE  191 (343)
Q Consensus       151 -----d----~--~i~~wd~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~  191 (343)
                           +    +  .+..+........      ....    ..+....+.|.|++.++++..|
T Consensus       102 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                 1    1  1333333322211      1111    1255678999999987777643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.27  E-value=4.4  Score=32.40  Aligned_cols=232  Identities=14%  Similarity=0.054  Sum_probs=113.8

Q ss_pred             EEEec--CceEEE-eeCC----CeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEeeCC----------
Q 019326           47 TVAVS--GTAAAS-GGTD----DTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFSTSAD----------  109 (343)
Q Consensus        47 ~l~~~--~~~l~s-~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~~~d----------  109 (343)
                      ..+++  +++++. -+.+    -.|+++|+.+++.+......  .....+.|.+++     +.|+-...+          
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~-----~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDG-----KGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTS-----SEEEEEECCCCSSCCSSSC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCC-----CEEEEEEeccccCcccccc
Confidence            34444  666553 2233    46999999999876533222  223568899998     555543322          


Q ss_pred             ------CeEEEEECCCccee--eeeeecc--ccEEEEEEecCCCEEEEEeC---CCe--EEEEEccCCce--------eE
Q 019326          110 ------GFVSIFDADPFVLL--TSVKVHK--KGVNDLAVHHSGKLALTVGR---DDC--LAMVNLVRGRR--------SF  166 (343)
Q Consensus       110 ------g~i~iwd~~~~~~~--~~~~~~~--~~v~~i~~~~~~~~l~~~~~---d~~--i~~wd~~~~~~--------~~  166 (343)
                            ..|..+.+.+...-  ..+....  ..+..+..++++++++....   +..  +.+.|+.....        ..
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  25777777654322  2233222  34667778889988764432   223  44555543221        11


Q ss_pred             EEEcCCcceEEEEeCCCCEEEEE----eCCcEEEEEccccee---EEEec-CCcceEE--eeecCCCeEEEE-eCCC--c
Q 019326          167 YHKIGKEASLIKFDGSGEKFFMV----TEEKVGIHQAEDAKL---LCELD-GKKRILC--AAPGENGVLFTG-GEDR--S  233 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~---~~~~~-~~~~i~~--~~~~~~~~l~~~-~~dg--~  233 (343)
                      .............+.++.+++..    .++.+...++.....   ...+. +...+..  +.+ .+++|+.. ..++  .
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~-~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEE
T ss_pred             eecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEE-ECCEEEEEEEcCCEeE
Confidence            11111111112222223333333    134555566554322   12233 3333332  333 44455444 4554  4


Q ss_pred             EEEEECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEE-EcC--CCcEEEEeccCcc
Q 019326          234 ITAWDTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVAS-ASS--DGVICVWDVRMAI  295 (343)
Q Consensus       234 i~i~d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s-~~~--dg~i~vwd~~~~~  295 (343)
                      |++++..+++...... .....|..+...+...        .+.++ .|.  =.++.-+|+.++.
T Consensus       361 l~v~~~~~~~~~~~~~-~~~~sv~~~~~~~~~~--------~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         361 LQLHDLATGALLKIFP-LEVGSVVGYSGQKKDT--------EIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTTCCEEEEEC-CCSSEEEEEECCTTCS--------EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCcEEEecC-CCCceEeeccCCCCCC--------EEEEEEcCCCCCCeEEEEECCCCC
Confidence            8889998877655444 3344454443222221        13333 222  2567778887763

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.13  E-value=3.3  Score=29.51  Aligned_cols=212  Identities=12%  Similarity=0.101  Sum_probs=111.9

Q ss_pred             CceEEEeeCCCeEEEEEcCCCeeeeEeccCCCCCeEEEEEeCCCCCCCCceEEEe------eCCCeEEEEECCCcceeee
Q 019326           52 GTAAASGGTDDTIHLYDLSTSSSLGAIHHHESSSVTSLAFYTPQNLSVPRNLFST------SADGFVSIFDADPFVLLTS  125 (343)
Q Consensus        52 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~s~------~~dg~i~iwd~~~~~~~~~  125 (343)
                      .+.++++...|.+.++-+..++.+..-+    .+|.... .|..++   .++.-+      -.-..|++-++...-....
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk----ePI~~~~-~Pk~~l---dfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR----EPINSVL-DPHYGV---GRVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS----SCCSEEC-EECTTB---SEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec----ccccCcC-CCccCc---ceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            4577888888999999888776554322    3333221 222211   111111      1112344444432111222


Q ss_pred             eeecc-ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeEEEEcCCc----------ceEEE-EeCCCCEEEEE--eC
Q 019326          126 VKVHK-KGVNDLAVHHSGKLALTVGRDDCLAMVNLVRGRRSFYHKIGKE----------ASLIK-FDGSGEKFFMV--TE  191 (343)
Q Consensus       126 ~~~~~-~~v~~i~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~--~~  191 (343)
                      +.... -.|.+++.. +.+..++|+......+|-++.|+.......+..          +..+. +.+..+-++++  ..
T Consensus        98 i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1          98 LEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             CTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             ecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEeccc
Confidence            22222 345555554 346788888888899999988876554444322          22222 23333334444  35


Q ss_pred             CcEEEEEcccceeEEEecCCcceEEeeecCCCeEEEEeC----CCcEEEEECCCCceeEE-ec-----ccccccEEEEEE
Q 019326          192 EKVGIHQAEDAKLLCELDGKKRILCAAPGENGVLFTGGE----DRSITAWDTNSGKVAYC-IE-----DAHSARVKGIVV  261 (343)
Q Consensus       192 ~~i~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~-~~-----~~h~~~v~~~~~  261 (343)
                      |.+++++.          .++.++......++.++++-+    ..-| -+|+++++.-.. ++     ......|+-+-+
T Consensus       177 G~lri~tp----------keGS~~~ay~~~gnKV~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         177 GGLRVFDS----------GEGSFSSASISPGMKVTAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEEECC----------SSEEEEEEEECTTSCEEEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             CCEEEecC----------CCCcccceeEccCceeeeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeee
Confidence            55555554          344555555556665544432    2223 458876653221 11     112234555667


Q ss_pred             EecCCCCCCCCCCeEEEEEcCCCcEEEEecc
Q 019326          262 LTKNDGGSTAENPYLVASASSDGVICVWDVR  292 (343)
Q Consensus       262 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  292 (343)
                      .|++.         +++.+-.||.-++|.-.
T Consensus       246 ~Pdd~---------L~iiakrdG~s~lF~nG  267 (313)
T d2hu7a1         246 LPDGR---------LAVVARREGRSAVFIDG  267 (313)
T ss_dssp             CTTSC---------EEEEEEETTEEEEEETT
T ss_pred             CCCCc---------EEEEEecCCchheeecc
Confidence            77776         77899999999999654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.99  E-value=5  Score=28.55  Aligned_cols=211  Identities=16%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             ceEEEeeCCCeEEEEECCCcceeeeeeeccccEEEEEEecCC--CEEEEE------eCCCeEEEEEccCCceeEEEEcCC
Q 019326          101 RNLFSTSADGFVSIFDADPFVLLTSVKVHKKGVNDLAVHHSG--KLALTV------GRDDCLAMVNLVRGRRSFYHKIGK  172 (343)
Q Consensus       101 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~------~~d~~i~~wd~~~~~~~~~~~~~~  172 (343)
                      ++++.+...|.+.++-+..++.+.--+   .+|.... .|..  .++..+      -.-..|.+-++...-.-.....+.
T Consensus        27 ~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          27 KLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             cEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            588888899999999887766544322   2322211 1111  111111      111234444443222223333345


Q ss_pred             cceEEEEeCCCCE-EEEE-eCCcEEEEEcccceeEE--EecCCcceE--------Eeeec-CC-CeEEEEeC-CCcEEEE
Q 019326          173 EASLIKFDGSGEK-FFMV-TEEKVGIHQAEDAKLLC--ELDGKKRIL--------CAAPG-EN-GVLFTGGE-DRSITAW  237 (343)
Q Consensus       173 ~~~~~~~~~~~~~-~~~~-~~~~i~~~d~~~~~~~~--~~~~~~~i~--------~~~~~-~~-~~l~~~~~-dg~i~i~  237 (343)
                      ++..+....+++. .+++ +.+...+|-++.++..+  .++.-+-|+        .+.+- .+ .-++++.. .|.++++
T Consensus       103 ~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         103 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             eEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            5666666555554 4444 78888888888877544  333333333        33332 11 23444544 7777777


Q ss_pred             ECCCCceeEEecccccccEEEEEEEecCCCCCCCCCCeEEEEEcCCCcEEEEeccCccccC-CCccccc--ccccceeEE
Q 019326          238 DTNSGKVAYCIEDAHSARVKGIVVLTKNDGGSTAENPYLVASASSDGVICVWDVRMAIKEK-PLPLAEA--KTNSRLTCL  314 (343)
Q Consensus       238 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~--~~~~~i~~~  314 (343)
                      +...|..-.... .....|.+ .+-                +.++.--| -+|+++++-+. ..|-..+  ...-.|+.+
T Consensus       183 tpkeGS~~~ay~-~~gnKV~s-dyE----------------t~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~  243 (313)
T d2hu7a1         183 DSGEGSFSSASI-SPGMKVTA-GLE----------------TAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWL  243 (313)
T ss_dssp             CCSSEEEEEEEE-CTTSCEEE-EEE----------------ESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEE
T ss_pred             cCCCCcccceeE-ccCceeee-ccC----------------CCCceEEE-EEecccCceeeeecCcccceeecceEEEee
Confidence            776665433332 22233311 111                11111122 23565442111 1121111  112347788


Q ss_pred             EcCCCCceeccccCCCCCCC
Q 019326          315 AGSSTKSFKRPQIGDSAPKG  334 (343)
Q Consensus       315 ~~s~~~~~~~~~~~~~~~~~  334 (343)
                      -+.|++++++.+-.+++...
T Consensus       244 ~Y~Pdd~L~iiakrdG~s~l  263 (313)
T d2hu7a1         244 GYLPDGRLAVVARREGRSAV  263 (313)
T ss_dssp             EECTTSCEEEEEEETTEEEE
T ss_pred             eeCCCCcEEEEEecCCchhe
Confidence            89999999777777765443