Citrus Sinensis ID: 019341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccHHHHHHHHHcccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEccccEEEccccHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHccccHHHHHHEEcccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
mssstkkkrpkpksnsssssssssssswswmteppqslfpskqDLLRLITVVAIASSVALTCNYLANflnstskpfcdsnllldspqsptdscepcpsngechqgklecfhgyrkhgklcvedgdinetaGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFeldnpvylytkkrTMETVGRYLEsrtnsygmkelkcpellaehykplscrihqwvSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENalmsksvngecepwVVASRLRdhlllpkerkdpviwkkvfflcpftrpsfnlGFIIFYGLKYP
Flexible Loop (DISEMBL)
mssstkkkrpkpksnssssssssssssWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRylesrtnsygmKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHlllpkerkdpviWKKVFFLcpftrpsfnLGFIIFYGLKYP
Low Complexity Region (SEG)
MssstkkkrpkpksnsssssssssssswsWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPvcsllvgcllllWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Disordered region (IsUnstruct)
******************************************QDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLL*******************CHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLK**
Disordered Region (DISOPRED)
**************************************FPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHEL**IFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEE*************PWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Disordered Region (DISEMBL)
**********************************PQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDS***************ECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Disordered Region (DISPRO)
*********************************PPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVFFLCPFTRPSFNLGFIIFYGLKYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255575726	373	conserved hypothetical protein [Ricinus	0.891	0.817	0.616	1e-113
224138028	382	predicted protein [Populus trichocarpa]	0.906	0.811	0.626	1e-110
225427312	383	PREDICTED: uncharacterized protein LOC10	0.909	0.812	0.575	7e-99
356495558	377	PREDICTED: uncharacterized protein LOC10	0.850	0.771	0.596	1e-97
356540585	381	PREDICTED: uncharacterized protein LOC10	0.862	0.774	0.590	2e-97
357482303	374	hypothetical protein MTR_5g014010 [Medic	0.818	0.748	0.574	2e-93
449461577	404	PREDICTED: uncharacterized protein LOC10	0.918	0.777	0.548	2e-92
240256408	387	uncharacterized protein [Arabidopsis tha	0.909	0.803	0.506	3e-81
297794583	389	hypothetical protein ARALYDRAFT_494322 [	0.874	0.768	0.471	1e-71
449510808	280	PREDICTED: uncharacterized LOC101208017,	0.780	0.953	0.516	1e-70

>gi|255575726|ref|XP_002528762.1| conserved hypothetical protein [Ricinus communis] gi|223531765|gb|EEF33584.1| conserved hypothetical protein [Ricinus communis]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/318 (61%), Positives = 243/318 (76%), Gaps = 13/318 (4%)

Query: 1   MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVAL 60
           MSSS+  KR KP        + S SSS + +T PP +LFPSK++ +RLI V+AIASSVA 
Sbjct: 1   MSSSSTNKRRKP--------NLSPSSSPTLLTGPPNNLFPSKEEFVRLIAVLAIASSVAF 52

Query: 61  TCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLC 120
           TCN +A ++N ++KPFCDSN       S ++ C PCP NGEC QGKLEC  GYRKH  +C
Sbjct: 53  TCNLIATYINPSTKPFCDSNT-----DSFSEFCVPCPENGECTQGKLECAEGYRKHRNIC 107

Query: 121 VEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDN 180
           +EDGDINE A +LS WVEN LC AYAQ+LCDG G+IW ++NDIW DL+GH+LM+ F+ DN
Sbjct: 108 IEDGDINERAKKLSEWVENHLCEAYAQYLCDGIGTIWFQDNDIWYDLDGHQLMENFQPDN 167

Query: 181 PVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVP 240
             Y+Y K++ ME + R LE RTNS+G KELKCP+L+AEHYKP +CR  QW+S HA +I  
Sbjct: 168 ATYIYAKRKAMEMIVRLLEIRTNSHGNKELKCPDLVAEHYKPFTCRFRQWISNHAFVIAS 227

Query: 241 VCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLR 300
           +CSL+VG +LLL K+ RR Y + R EELYHQVCE+LEENALMSK  NGEC+ WVVAS+LR
Sbjct: 228 LCSLVVGAVLLLRKLQRRWYLSARGEELYHQVCEVLEENALMSKQSNGECDSWVVASQLR 287

Query: 301 DHLLLPKERKDPVIWKKV 318
           DHLLLPKERKDPV+WK+V
Sbjct: 288 DHLLLPKERKDPVLWKRV 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138028|ref|XP_002326500.1| predicted protein [Populus trichocarpa] gi|222833822|gb|EEE72299.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/316 (62%), Positives = 244/316 (77%), Gaps = 6/316 (1%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           SST K+RPK   +SSSS   + SS      EPP +LFPSKQ+ LRLI V+AIASSVALTC
Sbjct: 2   SSTPKRRPKRDLSSSSSHPYTISSK----IEPPHNLFPSKQEFLRLIAVLAIASSVALTC 57

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           N++AN+++ ++KPFCD++L   S  S ++SCEPCP NGEC+QGKLEC  GYRKH   C+E
Sbjct: 58  NFIANYIDHSTKPFCDTSLD--SSDSLSNSCEPCPRNGECNQGKLECARGYRKHRNTCIE 115

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGD+ E A +L   VEN LC AYA FLC GTG +WV+E+DI NDL+GH+L++ +  DNPV
Sbjct: 116 DGDVYERAKKLLEGVENHLCEAYADFLCYGTGIMWVQEDDILNDLDGHQLLENYSSDNPV 175

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
           Y+YTK + MET+   L++RTN  G KE KCP+LL EHYKP +C + QW+S HAL+IVPVC
Sbjct: 176 YVYTKMKAMETISEELQTRTNPNGKKEFKCPDLLVEHYKPFTCHLRQWISEHALVIVPVC 235

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDH 302
           +L+VG   L+WK+ RR Y + R EELYHQVC+ILEE ALMSK VN ECEPWVVASRLRDH
Sbjct: 236 ALVVGFAFLVWKIRRRWYLSTRGEELYHQVCDILEERALMSKRVNAECEPWVVASRLRDH 295

Query: 303 LLLPKERKDPVIWKKV 318
           LL PKERKD V+WKKV
Sbjct: 296 LLSPKERKDFVLWKKV 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427312|ref|XP_002282079.1| PREDICTED: uncharacterized protein LOC100243743 [Vitis vinifera] gi|297742158|emb|CBI33945.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 182/316 (57%), Positives = 245/316 (77%), Gaps = 5/316 (1%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           +ST +KRPKP  +S S+ S SSSSS + + EPP++ FPSK +L +L+ V+AIA+SVA  C
Sbjct: 2   ASTPRKRPKP--HSKSTHSPSSSSSLNALMEPPENFFPSKPELFKLLAVIAIATSVAALC 59

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           NY+   L+  SKPFCD+N   DS   P+D CEPCPSN EC+QG +EC  GYRKHGKLC+E
Sbjct: 60  NYVVTILSRHSKPFCDTNA--DSQYLPSDLCEPCPSNAECYQGMMECVRGYRKHGKLCIE 117

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGDINETA +L+  +E  +C  YAQFLC GTGS+WV+E+++WND++  ++M+   L+N +
Sbjct: 118 DGDINETAKKLANRIETHVCEGYAQFLC-GTGSVWVQEDEVWNDVDELKMMENLGLENAI 176

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
            ++TK+R ME +   LE++ N  G+KELKCP LLAEHYKP SCR+ QW+S HAL+++P+C
Sbjct: 177 DMHTKQRAMEMIDGLLETKINHRGIKELKCPNLLAEHYKPFSCRVQQWISNHALVLMPIC 236

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDH 302
            LLVG +LLL ++ +RR  + R EELY+Q+C+ILEENA+M+K  +GE EPWVV S LRDH
Sbjct: 237 GLLVGSILLLRRIRQRRNLSARAEELYNQICDILEENAMMTKGGDGEGEPWVVVSWLRDH 296

Query: 303 LLLPKERKDPVIWKKV 318
           LLLPKERKDP++W+KV
Sbjct: 297 LLLPKERKDPLLWRKV 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495558|ref|XP_003516643.1| PREDICTED: uncharacterized protein LOC100779650 [Glycine max]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/302 (59%), Positives = 228/302 (75%), Gaps = 11/302 (3%)

Query: 19  SSSSSSSSSWSWM-TEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFC 77
           S+S+S S S+S M  EPPQ+L PSK D  RL+ VVA+AS VA TCN    FL + SKPFC
Sbjct: 12  SNSNSESCSFSLMGREPPQNLLPSKHDFPRLVLVVALASLVAWTCN----FLFTPSKPFC 67

Query: 78  DSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWV 137
           D NL   SP   +D CEPCPSNGEC+ GKL+C  GY++HG LCVEDGDINE+A +L   V
Sbjct: 68  DPNL--HSPDYFSDICEPCPSNGECNDGKLKCLQGYQRHGNLCVEDGDINESARKLLERV 125

Query: 138 ENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRY 197
           E+ LC  YAQFLC GTG+IWV E+D+WN  E    +K+   DN +Y YTK++  ET+G+ 
Sbjct: 126 EHHLCEEYAQFLCTGTGTIWVREDDLWNYFEPVGNVKV---DNALYKYTKQKAFETMGKL 182

Query: 198 LESRTNS-YGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVH 256
           L++R NS +GMKE KCP+ LAEHYK  +C I QW+S H L+++P+C++LVGC  L W V 
Sbjct: 183 LDTRLNSSHGMKEFKCPDQLAEHYKSYACCIRQWISQHILVVLPICAMLVGCTALFWSVR 242

Query: 257 RRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWK 316
           ++   + R+EELY++VCEILEENAL SKS NGECEPWVV+SRLRDHLLLP+ERK+P++WK
Sbjct: 243 QKLCMSRRIEELYNKVCEILEENALTSKSANGECEPWVVSSRLRDHLLLPRERKNPLLWK 302

Query: 317 KV 318
           KV
Sbjct: 303 KV 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540585|ref|XP_003538768.1| PREDICTED: uncharacterized protein LOC100784375 [Glycine max]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/303 (59%), Positives = 226/303 (74%), Gaps = 8/303 (2%)

Query: 19  SSSSSSSSSWSWMT-EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPF 76
           S+S+S   S S M  EPPQ+L PSK D  RL+ V+A+AS VA TCN+L  +  +  SKPF
Sbjct: 12  SNSNSEGCSLSLMGREPPQNLLPSKHDFPRLVLVIALASLVAWTCNFLFTSLFHPPSKPF 71

Query: 77  CDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRW 136
           CD+NL   SP    D C+PCPSNGEC+ GKLEC  GY++HG LC EDGDINE+A +L   
Sbjct: 72  CDTNL--HSPDYFLDICQPCPSNGECNDGKLECHQGYQRHGNLCAEDGDINESARKLLER 129

Query: 137 VENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGR 196
           VE+ LC  YAQFLC GTG IWV E+D+WN  E    +K+   DN +Y YTK+R +ET+G+
Sbjct: 130 VEHHLCEKYAQFLCTGTGIIWVHEDDLWNYFEPVGNVKV---DNALYNYTKQRAVETMGK 186

Query: 197 YLESRTNS-YGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKV 255
            LE+R NS +GMKE KCP+ LAEHYKP +C I QW+S H L+++P+C++LVGC  L W V
Sbjct: 187 LLETRLNSSHGMKEFKCPDQLAEHYKPYTCCIRQWISQHILVVLPICAMLVGCTALCWNV 246

Query: 256 HRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIW 315
            ++   + RVEELY +VCEILE+NAL SKS NGECEPWVVASRLRDHLLLP+ERK+P++W
Sbjct: 247 RQKLSMSRRVEELYDKVCEILEDNALTSKSANGECEPWVVASRLRDHLLLPRERKNPLLW 306

Query: 316 KKV 318
           KK+
Sbjct: 307 KKL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482303|ref|XP_003611437.1| hypothetical protein MTR_5g014010 [Medicago truncatula] gi|355512772|gb|AES94395.1| hypothetical protein MTR_5g014010 [Medicago truncatula]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 165/287 (57%), Positives = 218/287 (75%), Gaps = 7/287 (2%)

Query: 33  EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPFCDSNLLLDSPQSPTD 91
           EPP +L PSK +  +L+ V+ +AS VA + N L  +FL+ ++KPFCD+N L +    P D
Sbjct: 22  EPPPNLLPSKHEFPKLLLVLTVASLVAWSSNLLFTSFLHPSTKPFCDTNSLHN--HFP-D 78

Query: 92  SCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCD 151
           SCEPCPSNGEC+ GKLEC  GY+KHG LCVEDGDIN++A +++  VE  LC  YAQFLC 
Sbjct: 79  SCEPCPSNGECNDGKLECLRGYQKHGNLCVEDGDINDSARKIADTVERHLCGEYAQFLCS 138

Query: 152 GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELK 211
           GTGSIWV ++D+WN +E  E +K     N +Y YTK++  + + + LE R  ++GMKE K
Sbjct: 139 GTGSIWVHDDDLWNYIEPVENVK---EGNALYNYTKQKAFDMMDKLLEMRLTTHGMKEFK 195

Query: 212 CPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQ 271
           CP+ L E YKP +CR+ QW++ H L+++P+C++LVGC++L W V R+   + RVEELY++
Sbjct: 196 CPDSLVEQYKPYACRLRQWITQHILVVLPICAMLVGCMILFWNVRRKLRVSRRVEELYNK 255

Query: 272 VCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKV 318
           VCEILEENAL SKSVNGECEPWVVASRLRDHLLLP+ERKDP++WKKV
Sbjct: 256 VCEILEENALTSKSVNGECEPWVVASRLRDHLLLPRERKDPLLWKKV 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461577|ref|XP_004148518.1| PREDICTED: uncharacterized protein LOC101208017 [Cucumis sativus]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/328 (54%), Positives = 229/328 (69%), Gaps = 14/328 (4%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSW-----------MTEPPQSLFPSKQDLLRLITV 51
           SST KKR K K N +S   S S S               + EPP+  FPSK DL  LITV
Sbjct: 2   SSTPKKRTKVKRNPNSDVGSGSGSGVDSSVSSSSLLLKSIKEPPRDFFPSKDDLAALITV 61

Query: 52  VAIASSVALTCNYLANFLNSTSK-PFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECF 110
           + IA  V ++CN+  + L+S    PFCD++   DS    +D CEPCP +GEC  GKLEC 
Sbjct: 62  LIIACFVFVSCNFFVSRLSSRHPIPFCDTDA--DSSDFISDVCEPCPRHGECRDGKLECL 119

Query: 111 HGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGH 170
           HGYRKHG+LC+EDG INE   +LS W+E+ LC A A+FLCDG G +WV+ENDIW+DL+G 
Sbjct: 120 HGYRKHGRLCIEDGVINEAVNKLSEWLESHLCEANAKFLCDGIGIVWVKENDIWDDLDGK 179

Query: 171 ELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQW 230
           EL++    DN   +Y K + +ET+G  L++R NS G+KELKCP+LLAE YKP +CRI  W
Sbjct: 180 ELVESIGSDNTTLMYAKSKALETIGGLLQTRQNSLGIKELKCPDLLAESYKPFTCRIRHW 239

Query: 231 VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGEC 290
           V  HA +++PV  LLVGC  LLWK++RR+Y   R E+LY+QVCEILEENAL S   +G+C
Sbjct: 240 VLQHAFVVLPVFLLLVGCTWLLWKLYRRQYLTNRAEDLYNQVCEILEENALTSTRNSGQC 299

Query: 291 EPWVVASRLRDHLLLPKERKDPVIWKKV 318
           E WVVASRLRDHLLLP+ER++P++WKKV
Sbjct: 300 ESWVVASRLRDHLLLPRERRNPLLWKKV 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256408|ref|NP_199468.5| uncharacterized protein [Arabidopsis thaliana] gi|332008015|gb|AED95398.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 215/318 (67%), Gaps = 7/318 (2%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSS-WSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           S  +KRPK ++ +  +  SSSSSS    M EPPQSLFPSK +   L+ V+ +A +VA TC
Sbjct: 3   SIPRKRPKSETRTGRTPKSSSSSSPIRSMLEPPQSLFPSKGEFFTLLKVLLVACAVAFTC 62

Query: 63  NYLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCV 121
           N+L+  L+S  SK FCDSN   +   S  D CEPCP NGEC+QGKL+C  GY+    LCV
Sbjct: 63  NFLSKSLSSNPSKSFCDSN--FNPIDSDLDICEPCPINGECYQGKLQCNLGYKNQRNLCV 120

Query: 122 EDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNP 181
           EDG+INE+  +L  + E ++C +YA   C GTG+IWV END+W +L  +  +    LD  
Sbjct: 121 EDGEINESTKKLVGYFERKVCESYAHNECYGTGTIWVPENDVWTELRSNSFLS--NLDES 178

Query: 182 VYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPV 241
            Y + K + +E V   LE RTNS G+ ELKCPE +A+ YKPL+CR+HQW+  H LII   
Sbjct: 179 AYNFLKGKAVEGVTELLEKRTNSNGIDELKCPESVAKSYKPLTCRLHQWILRHILIISSS 238

Query: 242 CSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSV-NGECEPWVVASRLR 300
           C++LVG  +L  ++ R++ F+ RVEELY QVC+ LEENA+ S S     CEPWV+AS LR
Sbjct: 239 CAMLVGSAMLRRRIQRKQCFSRRVEELYDQVCDFLEENAVASNSAETSNCEPWVIASWLR 298

Query: 301 DHLLLPKERKDPVIWKKV 318
           D+LLLP+ER+DP++W KV
Sbjct: 299 DYLLLPRERRDPLLWTKV 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794583|ref|XP_002865176.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata] gi|297311011|gb|EFH41435.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/320 (47%), Positives = 199/320 (62%), Gaps = 21/320 (6%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCN 63
           S  +KRPK ++ +   +  SSSS    M EPPQS FPSK++  RL+ V+ +A  VA TCN
Sbjct: 3   SIPRKRPKSETRTPKRNPKSSSSPIRSMLEPPQSFFPSKEEFFRLLKVLLVACVVAFTCN 62

Query: 64  YLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           +LA  L+S  +K FCDSN   DS +S  D CEPCP NGEC QGKL+C  GY+K   LCVE
Sbjct: 63  FLAKSLSSNPTKSFCDSNY--DSIESDLDFCEPCPINGECCQGKLKCNLGYKKQRNLCVE 120

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DG+INE+  +L  + E ++C AYA   C GTG+IWV END+W +L  +  +    LD   
Sbjct: 121 DGEINESTKKLVGYFERKVCEAYAHNECYGTGAIWVPENDVWEELRSNSFLN--NLDESA 178

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMK--ELKCPELLAEHYKPLSCRIHQWVSTHALIIVP 240
           Y + K + +E V   LE RTNS G K   L  P                 +  H   +V 
Sbjct: 179 YNFLKGKAVEAVTELLEKRTNSNGRKLQTLDLPH------------ASMALEAHLNYLVR 226

Query: 241 VCS-LLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSVN-GECEPWVVASR 298
           +C+ +LVG  +L  K+ R+RYF+ RVEELY QVC+ LEENA+ S S +   CEPWV+AS 
Sbjct: 227 MCNGILVGSAILRRKIQRKRYFSRRVEELYDQVCDFLEENAVASNSADTSNCEPWVIASW 286

Query: 299 LRDHLLLPKERKDPVIWKKV 318
           LRD+LLLP+ER+DP++W KV
Sbjct: 287 LRDYLLLPRERRDPLLWTKV 306

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510808|ref|XP_004163763.1| PREDICTED: uncharacterized LOC101208017, partial [Cucumis sativus]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/281 (51%), Positives = 187/281 (66%), Gaps = 14/281 (4%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSW-----------MTEPPQSLFPSKQDLLRLITV 51
           SST KKR K K N +S   S S S               + EPP+  FPSK DL  LITV
Sbjct: 2   SSTPKKRTKVKRNPNSDVGSGSGSGVDSSVSSSSLLLKSIKEPPRDFFPSKDDLAALITV 61

Query: 52  VAIASSVALTCNYLANFLNSTSK-PFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECF 110
           + IA  V ++CN+  + L+S    PFCD++   DS    +D CEPCP +GEC  GKLEC 
Sbjct: 62  LIIACFVFVSCNFFVSRLSSRHPIPFCDTDA--DSSDFISDVCEPCPRHGECRDGKLECL 119

Query: 111 HGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGH 170
           HGYRKHG+LC+EDG INE   +LS W+E+ LC A A+FLCDG G +WV+ENDIW+DL+G 
Sbjct: 120 HGYRKHGRLCIEDGVINEAVNKLSEWLESHLCEANAKFLCDGIGIVWVKENDIWDDLDGK 179

Query: 171 ELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQW 230
           EL++    DN   +Y K + +ET+G  L++R NS G+KELKCP+LLAE YKP +CRI  W
Sbjct: 180 ELVESIGSDNTTLMYAKSKALETIGGLLQTRQNSLGIKELKCPDLLAESYKPFTCRIRHW 239

Query: 231 VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQ 271
           V  HA +++PV  LLVGC  LLWK++RR+Y   R E+LY+Q
Sbjct: 240 VLQHAFVVLPVFLLLVGCTWLLWKLYRRQYLTNRAEDLYNQ 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2142310	387	AT5G46560 "AT5G46560" [Arabido	0.827	0.731	0.501	5e-76

TAIR|locus:2142310 AT5G46560 "AT5G46560" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 146/291 (50%), Positives = 192/291 (65%)

Query:    31 MTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNST-SKPFCDSNLLLDSP-QS 88
             M EPPQSLFPSK +   L+ V+ +A +VA TCN+L+  L+S  SK FCDSN    +P  S
Sbjct:    31 MLEPPQSLFPSKGEFFTLLKVLLVACAVAFTCNFLSKSLSSNPSKSFCDSNF---NPIDS 87

Query:    89 PTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQF 148
               D CEPCP NGEC+QGKL+C  GY+    LCVEDG+INE+  +L  + E ++C +YA  
Sbjct:    88 DLDICEPCPINGECYQGKLQCNLGYKNQRNLCVEDGEINESTKKLVGYFERKVCESYAHN 147

Query:   149 LCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMK 208
              C GTG+IWV END+W +L  +  +    LD   Y + K + +E V   LE RTNS G+ 
Sbjct:   148 ECYGTGTIWVPENDVWTELRSNSFLS--NLDESAYNFLKGKAVEGVTELLEKRTNSNGID 205

Query:   209 ELKCPELLAEHYKPLSCRIHQWVSTHALIIVPXXXXXXXXXXXXWKVHRRRYFAIRVEEL 268
             ELKCPE +A+ YKPL+CR+HQW+  H LII               ++ R++ F+ RVEEL
Sbjct:   206 ELKCPESVAKSYKPLTCRLHQWILRHILIISSSCAMLVGSAMLRRRIQRKQCFSRRVEEL 265

Query:   269 YHQVCEILEENALMSKSVN-GECEPWVVASRLRDHLLLPKERKDPVIWKKV 318
             Y QVC+ LEENA+ S S     CEPWV+AS LRD+LLLP+ER+DP++W KV
Sbjct:   266 YDQVCDFLEENAVASNSAETSNCEPWVIASWLRDYLLLPRERRDPLLWTKV 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      342       302   0.00097  115 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  269 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.52u 0.25s 24.77t   Elapsed:  00:00:01
  Total cpu time:  24.52u 0.25s 24.77t   Elapsed:  00:00:01
  Start:  Sat May 11 10:45:02 2013   End:  Sat May 11 10:45:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290149 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam09402	326	pfam09402, MSC, Man1-Src1p-C-terminal domain	4e-19
pfam05501	122	pfam05501, DUF755, Domain of unknown function (DUF	0.004

>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain

 Score = 86.4 bits (214), Expect = 4e-19
 Identities = 56/302 (18%), Positives = 99/302 (32%), Gaps = 70/302 (23%)

Query: 67  NFLNSTSKPFCDSNLLLDS-------PQSPTDSCEPCPSNGECHQG-KLECFHGYRK--- 115
                 +  FC S     S        +     C PCP N  C+ G KL+C  G++    
Sbjct: 14  YREQKIAVGFCGSGAPTYSLALTPSFLERLKPQCIPCPPNAICYPGLKLKCEPGFKLKPH 73

Query: 116 -------HGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLC-DGTGSIWVEENDIWNDL 167
                      C+ D +  E    L       L +  A+  C +   S  + EN+++   
Sbjct: 74  PLSLLGLIPPKCIPDTEKEELVSELVDKALEELRKRNAKHECGEDDLSPGISENELYE-- 131

Query: 168 EGHELMKIFELDNPVYLYTKKRTMETVGRY-----------LESRTNSYGMKELKCPELL 216
                           L  KK        +            E+       + +      
Sbjct: 132 ---------------LLSEKKSPWINEEEFEDLWKAAIKELKENPEVVIRPEPILSKNGD 176

Query: 217 AEH------------YKPLSCRI----HQWVSTHALIIVPVCSLLVGCLLL--LWKVHRR 258
                          Y PLSCR       ++  + L+++ +  LL+    +    K  R 
Sbjct: 177 GSTETQKTLRSSSLAYLPLSCRFRRFVRLFLKRYRLLLLGLIILLLVVFYIRYRIKKKRE 236

Query: 259 RYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKE--RKDPVIWK 316
                +VEEL  ++ + L++    S   +   EP++   +LRD LL  +   ++   +W+
Sbjct: 237 E--KAQVEELVKKIIDKLKQQKEASDE-DTSEEPYLPIPQLRDDLLRDEHRLKRRNRLWE 293

Query: 317 KV 318
           KV
Sbjct: 294 KV 295

MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands. Length = 326

>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755)

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 2   SSSTKKKRPKPKSNSSSSSSSSSSSSWS 29
           SS + KK    K   SSSSSSSSSSS S
Sbjct: 89  SSRSAKKISAKKRRRSSSSSSSSSSSSS 116

This family is predominated by ORFs from Circoviridae. The function of this family remains to be determined. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PF09402	334	MSC: Man1-Src1p-C-terminal domain; InterPro: IPR01	100.0
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.04
PF01683	52	EB: EB module; InterPro: IPR006149 The EB domain h	83.18

>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2)

Probab=100.00  E-value=1.3e-49  Score=386.01  Aligned_cols=248  Identities=27%  Similarity=0.411  Sum_probs=54.1

Q ss_pred             CCCCCCCCCCCCCCCC--------------CCCCCCCccCCCCceecCC-ceecCCCceec-----------CCccccCc
Q 019341           71 STSKPFCDSNLLLDSP--------------QSPTDSCEPCPSNGECHQG-KLECFHGYRKH-----------GKLCVEDG  124 (342)
Q Consensus        71 ~~~~pfCds~~~~~~~--------------~~~~~~C~PCP~ha~C~~g-~l~C~~gfvl~-----------~p~CvpD~  124 (342)
                      +-..+|||++.  .+.              +..+|+|+|||+||+|++| ++.|++||+++           +++|++|+
T Consensus        18 ~~~vgyC~~~~--~~~~~~~~~~~~~~~~~~~~~P~C~pCP~~a~C~~~~~~~C~~~y~~~~~~l~~~g~~p~~~Ci~D~   95 (334)
T PF09402_consen   18 KIAVGYCGTES--PSPSFADDDISVPDWLLENFKPSCEPCPEHAICYPGLKLECEPGYVLKPSPLSLFGLIPPPKCIPDT   95 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccH
Confidence            35899999996  233              3467899999999999999 78999999999           99999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhccccc---CCCCcccchhhHHhhhhhhhhhhhhccChhhHHHHHHHHHHHHHhhhhhc
Q 019341          125 DINETAGRLSRWVENRLCRAYAQFLCD---GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESR  201 (342)
Q Consensus       125 ek~~~~k~v~~~i~~~Lr~rra~~eCG---~~~s~~v~e~dl~~~l~e~~~ke~~~ls~~~f~~l~~~Ale~i~~~le~~  201 (342)
                      ++++.+++|++++.++||+++|+++||   ...+..++++|+.+.+.++..   ..+++++|+++|+.|+.++.+.-+..
T Consensus        96 ~k~~~i~~l~~~~~~~Lr~~~a~~~Cg~~~~~~~~~ls~~el~~~~~~~~~---~~~~~~efe~l~~~a~~~L~~~~ei~  172 (334)
T PF09402_consen   96 EKEEKIEELAKKILDELRERNAQYECGDSEDDESPGLSEEELKDILSSKKS---PWISDEEFEELWSAALQELKKNPEII  172 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcHHHHHHHHHhccC---ccccHHHHHHHHHHHHHHHHhCCcEE
Confidence            999999999999999999999999999   444778999999999887542   36899999999999999885443222


Q ss_pred             cc------------CCCceeeecchhhhccccCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019341          202 TN------------SYGMKELKCPELLAEHYKPLSCRIHQW----VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRV  265 (342)
Q Consensus       202 ~~------------sn~~~~~k~~~~~s~a~lpl~C~~r~~----I~~~~l~I~~~~~lilg~~~~~~~~~~rr~~~~Rv  265 (342)
                      ..            ..+...+.+   ++++++||+|++++.    +.+|++.++++++++++++|+++++++++.++++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~s---~s~~~lpl~C~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v  249 (334)
T PF09402_consen  173 IRDDIINSHSSDDSNEKDKYFRS---SSLPYLPLKCRLRRQIRQFISRYRLIILGVLILLLLIKYIRYRYRKRREEKARV  249 (334)
T ss_dssp             ----------------------------------------------------------------------STHHHHHTTT
T ss_pred             EecccccccccccccCCcEEEEe---eCCCccccEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22            112223332   479999999977655    56888888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhhhcCCCCCCCCeeecccccccccCCC-CCC-ChhhhHHHHhhccCCCC
Q 019341          266 EELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPK-ERK-DPVIWKKVFFLCPFTRP  327 (342)
Q Consensus       266 ~eLV~~vld~L~~~al~~~~~~~~~eP~I~~~qLRD~lL~~~-~rk-r~~LWkkV~kvVE~~~~  327 (342)
                      ++||++|+++|++|+.. ...+...+|||++.||||+||.+. ..+ +++||++|+++||+|+.
T Consensus       250 ~~lv~~ii~~L~~~~~~-~~~~~~~~p~v~~~qLRD~ll~~~~~~~~~~~lW~~v~~~ve~ns~  312 (334)
T PF09402_consen  250 EELVKKIIDRLQDQARA-SDPNSSPEPYVSISQLRDDLLPPEHRLKRRNRLWKKVVKKVEENSN  312 (334)
T ss_dssp             TTTHHHHHHHHHHHHHH-HTTSS-S-S-B-HHHHHHTT--STTGGG-GHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHhhh-hccCCCCCCCccHHHHHHHhCCcccCHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999998873 334467799999999999999993 333 79999999999999764

Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.04  E-value=0.01  Score=40.80  Aligned_cols=28  Identities=43%  Similarity=1.067  Sum_probs=20.5

Q ss_pred             ccCCCCceecC---Cc--eecCCCceecCCccc
Q 019341           94 EPCPSNGECHQ---GK--LECFHGYRKHGKLCV  121 (342)
Q Consensus        94 ~PCP~ha~C~~---g~--l~C~~gfvl~~p~Cv  121 (342)
                      ++||+||.|++   |+  -+|..||++.+.+|+
T Consensus         5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~~~C~   37 (37)
T PF12946_consen    5 TKCPANAGCFRYDDGSEECRCLLGYKKVGGKCV   37 (37)
T ss_dssp             S---TTEEEEEETTSEEEEEE-TTEEEETTEEE
T ss_pred             ccCCCCcccEEcCCCCEEEEeeCCccccCCCcC
Confidence            58999999997   53  399999999998886

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function

Probab=83.18  E-value=1.8  Score=30.94  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=23.6

Q ss_pred             CCCccCCCCceecCCceecCCCceecCCcc
Q 019341           91 DSCEPCPSNGECHQGKLECFHGYRKHGKLC  120 (342)
Q Consensus        91 ~~C~PCP~ha~C~~g~l~C~~gfvl~~p~C  120 (342)
                      .+|+   .++.|.+|.-.|.+||+..+.+|
T Consensus        26 ~qC~---~~s~C~~g~C~C~~g~~~~~~~C   52 (52)
T PF01683_consen   26 EQCI---GGSVCVNGRCQCPPGYVEVGGRC   52 (52)
T ss_pred             CCCC---CcCEEcCCEeECCCCCEecCCCC
Confidence            4565   99999999999999999988776

It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
2ch0_A	133	Inner nuclear membrane protein MAN1; winged helix	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens} Length = 133

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 10/67 (14%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 254 KVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKERKDPV 313
           +  +      ++ ++  ++ ++L  +    +  N + +P++    +RD L+ P +RK   
Sbjct: 6   RWTKEEEETRQMYDMVVKIIDVLRSHNEACQE-NKDLQPYMPIPHVRDSLIQPHDRKKMK 64

Query: 314 -IWKKVF 319
            +W +  
Sbjct: 65  KVWDRAV 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 50/374 (13%), Positives = 108/374 (28%), Gaps = 125/374 (33%)

Query: 30  WMT----EPPQSLFPSKQDLLRLIT-----VVAIASSVALTCNYLANFLNS--TSKPFCD 78
           W+       P+++    Q LL  I          +S++ L  + +   L     SKP+ +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 79  SNLLLDSPQSPT-----DSCEPCPSNGECHQGKLEC-------------FHGYRKHGKLC 120
             L+L + Q+       +               L C             F        + 
Sbjct: 246 CLLVLLNVQNAKAWNAFN---------------LSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 121 VEDGDIN----ETAGRLSRWVENR--------------LCRAYAQFLCDGTGSIWVEEND 162
           ++   +     E    L ++++ R                   A+ + DG  + W    D
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATW----D 345

Query: 163 IWNDLEGHELMKIFE-----LDNPVY--LYTK-----------KRTMETVGRYLESRTNS 204
            W  +   +L  I E     L+   Y  ++ +              +  +   +      
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 205 YGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIR 264
             + +L    L+ +  K  +  I                     + L  KV     +A+ 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPS-------------------IYLELKVKLENEYAL- 445

Query: 265 VEELYHQVCEILEE-NALMSKSVNGECEPWV---VASRLRDHLLLPKERKDPVIWKKVFF 320
                H+   I++  N   +   +    P++     S +  HL   +  +   +++ VF 
Sbjct: 446 -----HR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF- 497

Query: 321 LCPFTRPSFNLGFI 334
                    +  F+
Sbjct: 498 --------LDFRFL 503

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
2ch0_A	133	Inner nuclear membrane protein MAN1; winged helix	99.33
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	92.58
1ob1_C	99	Major merozoite surface protein; immune system, im	91.49
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	89.3

>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-13  Score=117.53  Aligned_cols=79  Identities=13%  Similarity=0.287  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCeeecccccccccCCCCC-CChhhhHHHHhhccCCCCCcccc
Q 019341          254 KVHRRRYFAIRVEELYHQVCEILEENALMSKSVNGECEPWVVASRLRDHLLLPKER-KDPVIWKKVFFLCPFTRPSFNLG  332 (342)
Q Consensus       254 ~~~~rr~~~~Rv~eLV~~vld~L~~~al~~~~~~~~~eP~I~~~qLRD~lL~~~~r-kr~~LWkkV~kvVE~~~~~~~~~  332 (342)
                      ++++++.+.++|.+||++|+|+|++|+..+. .++..+|||+++||||+||.++.| ++++||+||+++||+|+.-.-.|
T Consensus         6 r~~k~~ee~~~v~~LV~~Iid~L~~q~~~~~-e~~~~~p~l~i~hLRD~ll~~~~r~k~~~lW~kAvk~lE~NesRVRte   84 (133)
T 2ch0_A            6 RWTKEEEETRQMYDMVVKIIDVLRSHNEACQ-ENKDLQPYMPIPHVRDSLIQPHDRKKMKKVWDRAVDFLAANESRVRTE   84 (133)
T ss_dssp             CCSTHHHHHTTTTTTHHHHHHHHHHHHHHHT-TSSCSCSCBCHHHHHHTTCCSTTGGGGHHHHHHHHHHHTTTCCCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCceehhhhHhhhcCccchHHHHHHHHHHHHHHHcccchhhhc
Confidence            3455677888999999999999988875432 234568999999999999999544 56999999999999999855444


Q ss_pred             e
Q 019341          333 F  333 (342)
Q Consensus       333 ~  333 (342)
                      .
T Consensus        85 ~   85 (133)
T 2ch0_A           85 T   85 (133)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=92.58  E-value=0.044  Score=43.90  Aligned_cols=33  Identities=21%  Similarity=0.600  Sum_probs=28.7

Q ss_pred             cCCCCceecC---C-ce-ecCCCceecCCccccCchhh
Q 019341           95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDGDIN  127 (342)
Q Consensus        95 PCP~ha~C~~---g-~l-~C~~gfvl~~p~CvpD~ek~  127 (342)
                      .||+||.||.   | .. +|-.||++.+.+||+|++..
T Consensus        11 kcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~   48 (95)
T 1b9w_A           11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMT   48 (95)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCC
T ss_pred             CCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCC
Confidence            7999999997   4 34 99999999999999998653

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=91.49  E-value=0.08  Score=42.88  Aligned_cols=32  Identities=31%  Similarity=0.912  Sum_probs=27.8

Q ss_pred             ccCCCCceecC---Cc-e-ecCCCceecCCccccCch
Q 019341           94 EPCPSNGECHQ---GK-L-ECFHGYRKHGKLCVEDGD  125 (342)
Q Consensus        94 ~PCP~ha~C~~---g~-l-~C~~gfvl~~p~CvpD~e  125 (342)
                      .-||+||.|+.   |. . +|..||...+.+|+++..
T Consensus        10 ~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~   46 (99)
T 1ob1_C           10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPN   46 (99)
T ss_dssp             CCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSC
T ss_pred             CCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCC
Confidence            36999999998   53 4 999999999999999964

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=89.30  E-value=0.15  Score=41.69  Aligned_cols=30  Identities=30%  Similarity=0.783  Sum_probs=26.5

Q ss_pred             cCCCCceecC---C-ce-ecCCCceecCCccccCc
Q 019341           95 PCPSNGECHQ---G-KL-ECFHGYRKHGKLCVEDG  124 (342)
Q Consensus        95 PCP~ha~C~~---g-~l-~C~~gfvl~~p~CvpD~  124 (342)
                      -||+||.|+.   | .. +|-.||...+.+|+++.
T Consensus        17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~N   51 (105)
T 1n1i_A           17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPAS   51 (105)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEECSSSEEECC
T ss_pred             CCCCCCCeEECCCCCEeEEEECCeeccCCEEEECC
Confidence            6999999998   4 34 99999999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	93.49
d1ob1c1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	92.89
d1b9wa1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	91.27
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	85.71
d1wm7a_	29	Neurotoxin bmp01 {Chinese scorpion (Buthus martens	85.69
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	83.5

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.49  E-value=0.015  Score=37.94  Aligned_cols=29  Identities=28%  Similarity=0.843  Sum_probs=25.4

Q ss_pred             cCCCCceecC--Cce--ecCCCceecCCccccC
Q 019341           95 PCPSNGECHQ--GKL--ECFHGYRKHGKLCVED  123 (342)
Q Consensus        95 PCP~ha~C~~--g~l--~C~~gfvl~~p~CvpD  123 (342)
                      .|.+||.|.+  |..  .|.+||.-.+..|+||
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C~~e   40 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE   40 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTEEECSSSEEET
T ss_pred             CCCCCCEeecCCCCeEeECCCCCcCCCCEeeCc
Confidence            6899999998  443  9999999999999986

>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.89  E-value=0.025  Score=37.40  Aligned_cols=30  Identities=33%  Similarity=0.949  Sum_probs=26.4

Q ss_pred             cCCCCceecC---Cc--eecCCCceecCCccccCc
Q 019341           95 PCPSNGECHQ---GK--LECFHGYRKHGKLCVEDG  124 (342)
Q Consensus        95 PCP~ha~C~~---g~--l~C~~gfvl~~p~CvpD~  124 (342)
                      -||+||-|+.   |.  -+|-.||+..+.+|||.+
T Consensus        11 ~~P~NagCfRyldg~EEwrCLL~fKk~~~kCv~~p   45 (45)
T d1ob1c1          11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENP   45 (45)
T ss_dssp             CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECS
T ss_pred             CCCcCcceeEecCCCeeeeeeeeecccCCCcccCC
Confidence            6999999997   42  599999999999999974

>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]

Probab=91.27  E-value=0.04  Score=36.40  Aligned_cols=30  Identities=23%  Similarity=0.614  Sum_probs=26.2

Q ss_pred             cCCCCceecC---Cc--eecCCCceecCCccccCc
Q 019341           95 PCPSNGECHQ---GK--LECFHGYRKHGKLCVEDG  124 (342)
Q Consensus        95 PCP~ha~C~~---g~--l~C~~gfvl~~p~CvpD~  124 (342)
                      -||+||-|+.   |.  -+|-.||+..+.+|||.+
T Consensus        11 ~~P~NAgC~Ry~dg~EEwRClL~fK~~~~~CV~~p   45 (45)
T d1b9wa1          11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAP   45 (45)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECT
T ss_pred             CCCCCcceeEecCCCeeEEEEeeeeccCCEeccCC
Confidence            6999999986   43  599999999999999864

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.19  Score=32.41  Aligned_cols=28  Identities=36%  Similarity=0.997  Sum_probs=22.6

Q ss_pred             ccCCCCceecCC--ce--ecCCCceecCCccccC
Q 019341           94 EPCPSNGECHQG--KL--ECFHGYRKHGKLCVED  123 (342)
Q Consensus        94 ~PCP~ha~C~~g--~l--~C~~gfvl~~p~CvpD  123 (342)
                      .||..+|.|.+.  ..  .|.+||.  ++.|+.|
T Consensus        11 ~pC~n~g~C~n~~g~y~C~C~~G~~--G~~Ce~d   42 (42)
T d2vj3a1          11 NPCEHAGKCINTLGSFECQCLQGYT--GPRCEID   42 (42)
T ss_dssp             CSSSTTCEEEECSSSEEEECCTTEE--STTSCEE
T ss_pred             CCCCCCcEeECCCCCEEeECCCCCc--CCCCcCc
Confidence            399999999994  33  9999996  7788765

>d1wm7a_ g.3.7.2 (A:) Neurotoxin bmp01 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Short-chain scorpion toxins
domain: Neurotoxin bmp01
species: Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]

Probab=85.69  E-value=0.14  Score=30.19  Aligned_cols=21  Identities=24%  Similarity=0.751  Sum_probs=13.3

Q ss_pred             CCccCCCCceecCCceecCCC
Q 019341           92 SCEPCPSNGECHQGKLECFHG  112 (342)
Q Consensus        92 ~C~PCP~ha~C~~g~l~C~~g  112 (342)
                      .|+-||+|--=.+....|+.|
T Consensus         2 ~cedcpehc~tq~arakcdnd   22 (29)
T d1wm7a_           2 TCEDCPEHCATQNARAKCDND   22 (29)
T ss_dssp             CGGGSTTTTTTTTCEEECSSS
T ss_pred             ccccchHHhhhhhhhhhccCC
Confidence            699999994433344455544

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.26  Score=32.07  Aligned_cols=26  Identities=38%  Similarity=0.807  Sum_probs=21.4

Q ss_pred             CCCCceecC--Cce--ecCCCceecCCccc
Q 019341           96 CPSNGECHQ--GKL--ECFHGYRKHGKLCV  121 (342)
Q Consensus        96 CP~ha~C~~--g~l--~C~~gfvl~~p~Cv  121 (342)
                      |+.|++|.+  |..  .|.+||.+.+.+|+
T Consensus        13 ~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~   42 (43)
T d1emoa1          13 VCKHGQCINTDGSYRCECPFGYILAGNECV   42 (43)
T ss_dssp             SCSSSCCCCCSSCCCCCCCTTEEESSSCEE
T ss_pred             CCCCCEeECCCCCeEeECCCCcccCCCccc
Confidence            445899999  543  99999999998886